AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024778.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024778.01.T01 MTR_5g016320 96.667 600 20 0 1 600 1 600 0.0 1201
MsG0580024778.01.T01 MTR_0035s0150 77.741 602 118 4 1 600 1 588 0.0 959
MsG0580024778.01.T01 MTR_8g467000 63.481 586 203 3 24 600 18 601 0.0 788
MsG0580024778.01.T01 MTR_2g081860 60.199 603 225 4 12 600 2 603 0.0 760
MsG0580024778.01.T01 MTR_4g045903 60.757 581 221 4 23 600 32 608 0.0 752
MsG0580024778.01.T01 MTR_1g088765 53.425 584 262 5 23 596 13 596 0.0 635
MsG0580024778.01.T01 MTR_1g088765 53.319 452 203 4 153 596 1 452 4.54e-171 494
MsG0580024778.01.T01 MTR_7g117110 39.587 581 340 6 15 591 5 578 8.80e-146 434
MsG0580024778.01.T01 MTR_8g027970 38.554 581 340 6 15 590 5 573 1.06e-142 426
MsG0580024778.01.T01 MTR_8g027920 37.629 582 344 8 15 590 5 573 1.05e-141 423
MsG0580024778.01.T01 MTR_8g027965 37.500 576 343 6 20 590 10 573 3.91e-138 414
MsG0580024778.01.T01 MTR_8g027955 37.457 582 345 8 15 590 12 580 2.35e-137 412
MsG0580024778.01.T01 MTR_0102s0060 33.275 574 366 5 22 583 20 588 1.51e-118 364
MsG0580024778.01.T01 MTR_7g117110 38.035 397 244 2 15 410 5 400 1.90e-88 280
MsG0580024778.01.T01 MTR_7g094190 30.783 575 366 13 24 579 8 569 5.95e-80 263
MsG0580024778.01.T01 MTR_8g037720 36.086 327 177 6 269 591 136 434 9.14e-66 221
MsG0580024778.01.T01 MTR_8g037720 42.424 99 54 1 25 120 3 101 2.74e-16 82.0
MsG0580024778.01.T01 MTR_7g094190 31.696 448 280 10 145 579 35 469 6.16e-65 221
MsG0580024778.01.T01 MTR_1g047730 37.638 271 143 5 327 591 111 361 1.67e-58 200
MsG0580024778.01.T01 MTR_7g094330 30.466 279 152 7 145 418 35 276 5.00e-31 122
MsG0580024778.01.T01 MTR_3g023280 51.376 109 52 1 489 596 19 127 8.99e-28 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024778.01.T01 AT2G14960 74.959 603 134 4 1 600 1 589 0.0 942
MsG0580024778.01.T01 AT2G23170 75.372 605 134 6 1 600 1 595 0.0 931
MsG0580024778.01.T01 AT4G37390 74.257 606 147 4 1 600 1 603 0.0 926
MsG0580024778.01.T01 AT1G59500 69.934 602 174 4 1 600 1 597 0.0 853
MsG0580024778.01.T01 AT5G54510 64.094 596 202 5 14 600 16 608 0.0 801
MsG0580024778.01.T01 AT4G27260 64.034 595 204 4 14 600 16 608 0.0 801
MsG0580024778.01.T01 AT1G28130 53.488 602 260 7 14 596 4 604 0.0 662
MsG0580024778.01.T01 AT2G47750 50.000 584 277 8 21 596 9 585 0.0 590
MsG0580024778.01.T01 AT1G23160 47.945 584 285 6 13 588 5 577 0.0 561
MsG0580024778.01.T01 AT5G13320 46.573 569 288 4 27 588 30 589 0.0 546
MsG0580024778.01.T01 AT5G13320 46.573 569 288 4 27 588 15 574 0.0 545
MsG0580024778.01.T01 AT5G13320 46.573 569 288 4 27 588 15 574 0.0 545
MsG0580024778.01.T01 AT5G13370 46.620 577 300 6 23 594 13 586 0.0 536
MsG0580024778.01.T01 AT5G13360 46.296 594 305 6 7 594 78 663 0.0 530
MsG0580024778.01.T01 AT5G13360 46.886 578 296 5 23 594 13 585 0.0 529
MsG0580024778.01.T01 AT5G13360 46.886 578 296 5 23 594 13 585 0.0 529
MsG0580024778.01.T01 AT1G28130 55.315 461 189 5 153 596 1 461 0.0 521
MsG0580024778.01.T01 AT5G13380 46.274 577 299 5 24 594 44 615 5.82e-178 518
MsG0580024778.01.T01 AT1G48660 44.041 579 311 5 19 592 2 572 1.54e-176 513
MsG0580024778.01.T01 AT1G48660 44.194 577 310 5 19 592 2 569 2.13e-175 509
MsG0580024778.01.T01 AT5G13350 44.483 580 308 7 23 594 13 586 9.38e-175 508
MsG0580024778.01.T01 AT5G13350 44.483 580 308 7 23 594 13 586 9.38e-175 508
MsG0580024778.01.T01 AT5G51470 43.915 567 306 4 25 588 14 571 1.45e-168 492
MsG0580024778.01.T01 AT1G48670 41.053 570 273 6 27 592 11 521 1.88e-148 439
MsG0580024778.01.T01 AT2G46370 38.937 583 338 8 15 591 5 575 5.84e-141 421
MsG0580024778.01.T01 AT2G46370 38.937 583 338 8 15 591 5 575 5.84e-141 421
MsG0580024778.01.T01 AT2G46370 38.937 583 338 8 15 591 16 586 6.41e-141 422
MsG0580024778.01.T01 AT5G51470 42.916 487 267 3 105 588 3 481 5.02e-139 414
MsG0580024778.01.T01 AT1G48670 46.635 416 212 3 180 592 2 410 4.99e-132 393
MsG0580024778.01.T01 AT2G46370 38.386 508 297 6 88 591 1 496 4.14e-123 373
MsG0580024778.01.T01 AT4G03400 33.105 583 369 7 17 583 5 582 1.49e-118 364
MsG0580024778.01.T01 AT4G03400 33.105 583 369 7 17 583 5 582 1.49e-118 364
MsG0580024778.01.T01 AT1G48690 39.378 193 113 2 19 211 2 190 7.37e-39 141

Find 126 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATCCGGTTTAAGTATTT+TGG 0.152591 5:+9578731 None:intergenic
TTGAACTGAGTCAGTGTTTA+TGG 0.165358 5:+9579711 None:intergenic
GCTTCATCTGAATGTTATTT+TGG 0.191327 5:-9578534 MsG0580024778.01.T01:CDS
AAATGCTTCTGAATTGTTAA+AGG 0.206551 5:-9578169 MsG0580024778.01.T01:CDS
CTGGACATTATGTTATCTAT+TGG 0.236480 5:-9578092 MsG0580024778.01.T01:CDS
CTTATAATCACAACTTATTC+AGG 0.253897 5:-9578339 MsG0580024778.01.T01:CDS
ATCCTTCAACGACGTCGTTC+TGG 0.258570 5:+9577760 None:intergenic
TTAGGTTCCTTCAGCTCAAC+TGG 0.281934 5:-9578830 MsG0580024778.01.T01:CDS
CAACAGATATGTTCCTGATT+TGG 0.286352 5:-9579126 MsG0580024778.01.T01:intron
GAGTCAAGAAGTTCCATTAT+AGG 0.293990 5:+9577829 None:intergenic
TGTTGAATCTGAAATCCTTT+TGG 0.297924 5:-9579797 MsG0580024778.01.T01:CDS
TGGACATTATGTTATCTATT+GGG 0.303558 5:-9578091 MsG0580024778.01.T01:CDS
TGTAACAAAATTAGCGAGTT+CGG 0.326262 5:+9578710 None:intergenic
CCGGGCTTCTCCGAGCCATT+AGG 0.338420 5:-9578848 MsG0580024778.01.T01:CDS
TTTGTGTTAGGCCAGATTCT+TGG 0.342221 5:+9578651 None:intergenic
GGACTTGTTAACACATTGTA+AGG 0.342995 5:+9578978 None:intergenic
GTAACCCATGTTTGGCATAA+TGG 0.346043 5:+9578467 None:intergenic
GACATGCACTGTTTGATAGA+AGG 0.351174 5:+9578753 None:intergenic
GTAACAAAATTAGCGAGTTC+GGG 0.351298 5:+9578711 None:intergenic
TTGTGTTAGGCCAGATTCTT+GGG 0.352673 5:+9578652 None:intergenic
CGTGAGTTTCACTCCTATAA+TGG 0.353049 5:-9577842 MsG0580024778.01.T01:CDS
GAGTCACGTGAGAGGGTTAT+AGG 0.358227 5:+9578414 None:intergenic
GAATCAATGTTGTTTGGTTA+TGG 0.360826 5:-9578022 MsG0580024778.01.T01:CDS
AAGAATGTTCAGGAGACAAT+TGG 0.367565 5:-9578686 MsG0580024778.01.T01:CDS
TTTGTTACAAAAGAATGTTC+AGG 0.371323 5:-9578696 MsG0580024778.01.T01:CDS
TTGAAACGGTTTGGACTTAA+CGG 0.372336 5:-9579640 MsG0580024778.01.T01:CDS
TTCACCACACGTATCTCTAA+TGG 0.376428 5:+9577943 None:intergenic
TGGCACGTTTGAGGAACTAA+TGG 0.378498 5:-9577917 MsG0580024778.01.T01:CDS
GCTGATACAAAATCCATTCC+TGG 0.383064 5:-9578111 MsG0580024778.01.T01:CDS
AATTCAAAGTAACCCATGTT+TGG 0.385809 5:+9578459 None:intergenic
GAACTTCATGGCGCATGATT+AGG 0.390929 5:+9578895 None:intergenic
TTAGTCCTTCTCTACCTCAT+TGG 0.392898 5:-9577786 MsG0580024778.01.T01:CDS
GGGTTCCTGTTTCAATGTCA+TGG 0.396046 5:+9578796 None:intergenic
AAATGAAGCTATCCTTTGTC+TGG 0.396144 5:-9578955 MsG0580024778.01.T01:CDS
ACTTCATTAGGTTCTGTCAT+TGG 0.400294 5:+9578498 None:intergenic
CTCCGACTCGAAGAACTTCA+TGG 0.400753 5:+9578883 None:intergenic
ACTGAGTACTTGAAACGGTT+TGG 0.400987 5:-9579649 MsG0580024778.01.T01:CDS
CGCCTCACAAATTTGAATTG+AGG 0.403765 5:+9578258 None:intergenic
ATAGGTGATAACGGCGACTT+TGG 0.405359 5:+9579591 None:intergenic
GCATACATTGTACATGGCTT+TGG 0.406768 5:+9578555 None:intergenic
AGAGTAGCTGATAATTCAAT+TGG 0.409619 5:-9577967 MsG0580024778.01.T01:CDS
TGAATTGAGGATCGGAGTTA+TGG 0.415966 5:+9578271 None:intergenic
ACCTCAAGATACTTTGTGTT+AGG 0.417991 5:+9578639 None:intergenic
CATGTCCAAAATACTTAAAC+CGG 0.418636 5:-9578736 MsG0580024778.01.T01:CDS
TAGGTTCTGTCATTGGCTTA+AGG 0.419185 5:+9578505 None:intergenic
TCAGCAAGGTCTACTAGCTT+TGG 0.421816 5:+9578387 None:intergenic
TTGTAGTAAGCTGTTAGAAC+TGG 0.422702 5:+9579032 None:intergenic
AGACAAAGGATAGCTTCATT+TGG 0.426976 5:+9578957 None:intergenic
ATGGTGTAAGACACTTCATT+AGG 0.427282 5:+9578486 None:intergenic
GCCTACTATTCATCAAGAAA+TGG 0.427538 5:-9579320 MsG0580024778.01.T01:CDS
AACGTATAATCCCAAGAATC+TGG 0.429037 5:-9578662 MsG0580024778.01.T01:CDS
TCCATTTCTTGATGAATAGT+AGG 0.437851 5:+9579319 None:intergenic
TATCTTGAGGTTATTGTCAC+TGG 0.443122 5:-9578627 MsG0580024778.01.T01:CDS
ATGTATACTCAGATGCTTTG+TGG 0.445009 5:-9578918 MsG0580024778.01.T01:CDS
AGTGTTGAATCAATGTTGTT+TGG 0.445864 5:-9578028 MsG0580024778.01.T01:CDS
TGATTCAACACTTCTTCTGT+TGG 0.447138 5:+9578039 None:intergenic
TTAGTCCATGACATTGAAAC+AGG 0.449357 5:-9578801 MsG0580024778.01.T01:CDS
TTAGCAATGCGTTGAATGTC+AGG 0.450086 5:+9579556 None:intergenic
CTGGTCAGAAACTCTGAGAT+TGG 0.451558 5:+9579502 None:intergenic
TTCAACACTTCTTCTGTTGG+AGG 0.453608 5:+9578042 None:intergenic
AAATTAGCGAGTTCGGGATC+CGG 0.454702 5:+9578717 None:intergenic
GACCTTGCTGATGTTGAAAT+CGG 0.457109 5:-9578375 MsG0580024778.01.T01:CDS
ATTTCAGATTCAACAGCCAT+TGG 0.466156 5:+9579805 None:intergenic
CTCCAGAACGACGTCGTTGA+AGG 0.467415 5:-9577762 None:intergenic
CTTTGGATTTGAAAGTTTCA+CGG 0.476580 5:+9579608 None:intergenic
AGAATGTTCAGGAGACAATT+GGG 0.479539 5:-9578685 MsG0580024778.01.T01:CDS
AACACATTGTAAGGGTCAAA+TGG 0.480939 5:+9578987 None:intergenic
GGTGATATTCTTCAAGTCAC+AGG 0.486432 5:-9578297 MsG0580024778.01.T01:CDS
GGTTATTGTCACTGGTGCTA+TGG 0.489560 5:-9578619 MsG0580024778.01.T01:CDS
TAATGGAACTTCTTGACTCT+AGG 0.502283 5:-9577825 MsG0580024778.01.T01:CDS
GTCAGGTGAAAGATCTTCAT+AGG 0.502586 5:+9579573 None:intergenic
TGCAGTTCAGGAACATCAGC+TGG 0.503724 5:-9579358 MsG0580024778.01.T01:intron
GGTTACCACTGTAATAATCA+AGG 0.506382 5:+9578580 None:intergenic
CGTGTTGTTGAGTATCGATT+CGG 0.508782 5:-9578229 MsG0580024778.01.T01:CDS
GGTCTTTGCCGTTACAGAGT+TGG 0.511203 5:-9578318 MsG0580024778.01.T01:CDS
TTAATCAGTATAAAGTTCCT+AGG 0.514790 5:-9577867 MsG0580024778.01.T01:CDS
CAGAAGAAGGTGGTTCCAAA+AGG 0.514827 5:+9579782 None:intergenic
GCAAGGTCTACTAGCTTTGG+AGG 0.517582 5:+9578390 None:intergenic
CACAAATTTGAATTGAGGAT+CGG 0.520573 5:+9578263 None:intergenic
TTCGGATAAAACAGACGAAT+CGG 0.522401 5:-9578211 MsG0580024778.01.T01:CDS
AATGGAACTTCTTGACTCTA+GGG 0.522711 5:-9577824 MsG0580024778.01.T01:CDS
TTTGAAAGTTTCACGGTCAG+TGG 0.533276 5:+9579615 None:intergenic
CCTAATGGCTCGGAGAAGCC+CGG 0.537712 5:+9578848 None:intergenic
GTTGAGCTGAAGGAACCTAA+TGG 0.538471 5:+9578833 None:intergenic
TATGTTCCTGATTTGGACAA+AGG 0.547413 5:-9579119 MsG0580024778.01.T01:CDS
GATAACATAATGTCCAGGAA+TGG 0.549039 5:+9578098 None:intergenic
ACAACTTACTGGTTCATCAC+TGG 0.553006 5:+9579265 None:intergenic
CAGAAACTGAGTACTTGAAA+CGG 0.555445 5:-9579654 MsG0580024778.01.T01:CDS
TTCTTCTGTTGGAGGATCAG+AGG 0.557607 5:+9578050 None:intergenic
GATGAAGCATACATTGTACA+TGG 0.560482 5:+9578549 None:intergenic
TAGGTTCCTTCAGCTCAACT+GGG 0.562924 5:-9578829 MsG0580024778.01.T01:CDS
AAGATCTTCATAGGTGATAA+CGG 0.566927 5:+9579582 None:intergenic
CAATCTCAGAGTTTCTGACC+AGG 0.571947 5:-9579501 MsG0580024778.01.T01:intron
ATTCAGCCCAGTTGAGCTGA+AGG 0.574788 5:+9578823 None:intergenic
GACATTCAACGCATTGCTAA+CGG 0.575369 5:-9579553 MsG0580024778.01.T01:CDS
GGACGTGCCACTAACCCACT+TGG 0.582325 5:+9579053 None:intergenic
CAATAGATAACATAATGTCC+AGG 0.583043 5:+9578093 None:intergenic
TGGAGGTGAGTCACGTGAGA+GGG 0.584345 5:+9578407 None:intergenic
AAACTCTGAGATTGGATGAG+AGG 0.584597 5:+9579510 None:intergenic
CGCCATGAAGTTCTTCGAGT+CGG 0.584929 5:-9578885 MsG0580024778.01.T01:CDS
ACATTGTACATGGCTTTGGT+AGG 0.586212 5:+9578559 None:intergenic
GGAGTCCAATGAGGTAGAGA+AGG 0.586779 5:+9577781 None:intergenic
CCTACCCTTGATTATTACAG+TGG 0.588702 5:-9578585 MsG0580024778.01.T01:CDS
TTACACCATTATGCCAAACA+TGG 0.590839 5:-9578472 MsG0580024778.01.T01:CDS
GACTTGTTAACACATTGTAA+GGG 0.591653 5:+9578979 None:intergenic
TTGAATTCTGTTTATAGACA+AGG 0.592330 5:-9577991 MsG0580024778.01.T01:CDS
CGTCGTTCTGGAGTCCAATG+AGG 0.593147 5:+9577772 None:intergenic
GGAACTTCTTGACTCTAGGG+TGG 0.594581 5:-9577821 MsG0580024778.01.T01:CDS
GGTTCATCACTGGCATGAGT+AGG 0.600133 5:+9579275 None:intergenic
GCTGAAGGAACCTAATGGCT+CGG 0.602143 5:+9578838 None:intergenic
ATCCTCAATTCAAATTTGTG+AGG 0.604210 5:-9578260 MsG0580024778.01.T01:CDS
TACCGATTTCAACATCAGCA+AGG 0.605061 5:+9578373 None:intergenic
TACACCATTATGCCAAACAT+GGG 0.605854 5:-9578471 MsG0580024778.01.T01:CDS
ATTGGATGAGAGGACAAGAT+CGG 0.606719 5:+9579520 None:intergenic
GAATATCACCAACTCTGTAA+CGG 0.607477 5:+9578310 None:intergenic
GCCTAACACAAAGTATCTTG+AGG 0.610993 5:-9578640 MsG0580024778.01.T01:CDS
GTTACCACTGTAATAATCAA+GGG 0.613578 5:+9578581 None:intergenic
TTGGAGGTGAGTCACGTGAG+AGG 0.626134 5:+9578406 None:intergenic
CCACTGTAATAATCAAGGGT+AGG 0.627514 5:+9578585 None:intergenic
TTTGAAATGAATCCAGACAA+AGG 0.634217 5:+9578943 None:intergenic
GGAGTGAAACTCACGCACCT+AGG 0.634419 5:+9577850 None:intergenic
ATGGATTATGCAATATCGCG+TGG 0.656625 5:-9577898 MsG0580024778.01.T01:CDS
TGAAGTTCTTCGAGTCGGAG+CGG 0.662649 5:-9578880 MsG0580024778.01.T01:CDS
ATAGGTGATGAATCATCATG+TGG 0.689225 5:+9578432 None:intergenic
GGCTGTACAATAACTGACGA+CGG 0.700187 5:+9579296 None:intergenic
TGGACCATTAGAGATACGTG+TGG 0.736597 5:-9577947 MsG0580024778.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGTTTGTTAATTAATTA+CGG - Chr5:9578403-9578422 MsG0580024778.01.T01:CDS 10.0%
!! TATTCATTACAATAAACTCA+CGG + Chr5:9578352-9578371 None:intergenic 20.0%
!! TTAATTACGGTTTCTTAATT+TGG - Chr5:9578416-9578435 MsG0580024778.01.T01:CDS 20.0%
! AAATGCTTCTGAATTGTTAA+AGG - Chr5:9579398-9579417 MsG0580024778.01.T01:intron 25.0%
! ATTCATTACAATAAACTCAC+GGG + Chr5:9578351-9578370 None:intergenic 25.0%
! CTTATAATCACAACTTATTC+AGG - Chr5:9579228-9579247 MsG0580024778.01.T01:intron 25.0%
! TATATTGATGAATATGAACC+TGG + Chr5:9578087-9578106 None:intergenic 25.0%
! TGGACATTATGTTATCTATT+GGG - Chr5:9579476-9579495 MsG0580024778.01.T01:intron 25.0%
! TTAATCAGTATAAAGTTCCT+AGG - Chr5:9579700-9579719 MsG0580024778.01.T01:CDS 25.0%
! TTGAATTCTGTTTATAGACA+AGG - Chr5:9579576-9579595 MsG0580024778.01.T01:CDS 25.0%
! TTTGTTACAAAAGAATGTTC+AGG - Chr5:9578871-9578890 MsG0580024778.01.T01:CDS 25.0%
AAGATCTTCATAGGTGATAA+CGG + Chr5:9577988-9578007 None:intergenic 30.0%
AATTCAAAGTAACCCATGTT+TGG + Chr5:9579111-9579130 None:intergenic 30.0%
AGAGTAGCTGATAATTCAAT+TGG - Chr5:9579600-9579619 MsG0580024778.01.T01:CDS 30.0%
ATCCTCAATTCAAATTTGTG+AGG - Chr5:9579307-9579326 MsG0580024778.01.T01:CDS 30.0%
CAATAGATAACATAATGTCC+AGG + Chr5:9579477-9579496 None:intergenic 30.0%
CACAAATTTGAATTGAGGAT+CGG + Chr5:9579307-9579326 None:intergenic 30.0%
CATGTCCAAAATACTTAAAC+CGG - Chr5:9578831-9578850 MsG0580024778.01.T01:CDS 30.0%
CTGGACATTATGTTATCTAT+TGG - Chr5:9579475-9579494 MsG0580024778.01.T01:intron 30.0%
CTTTGGATTTGAAAGTTTCA+CGG + Chr5:9577962-9577981 None:intergenic 30.0%
GTTACCACTGTAATAATCAA+GGG + Chr5:9578989-9579008 None:intergenic 30.0%
TCCATTTCTTGATGAATAGT+AGG + Chr5:9578251-9578270 None:intergenic 30.0%
TGTAACAAAATTAGCGAGTT+CGG + Chr5:9578860-9578879 None:intergenic 30.0%
TTACAACAGAAACAACTTAC+TGG + Chr5:9578316-9578335 None:intergenic 30.0%
! AGTGTTGAATCAATGTTGTT+TGG - Chr5:9579539-9579558 MsG0580024778.01.T01:CDS 30.0%
! ATAGAAGGATCAGTGATTTT+TGG + Chr5:9578802-9578821 None:intergenic 30.0%
! GAATCAATGTTGTTTGGTTA+TGG - Chr5:9579545-9579564 MsG0580024778.01.T01:CDS 30.0%
! TAGAAGGATCAGTGATTTTT+GGG + Chr5:9578801-9578820 None:intergenic 30.0%
! TTTGAAATGAATCCAGACAA+AGG + Chr5:9578627-9578646 None:intergenic 30.0%
!! GACTTGTTAACACATTGTAA+GGG + Chr5:9578591-9578610 None:intergenic 30.0%
!! GCTTCATCTGAATGTTATTT+TGG - Chr5:9579033-9579052 MsG0580024778.01.T01:CDS 30.0%
!! TGTTGAATCTGAAATCCTTT+TGG - Chr5:9577770-9577789 MsG0580024778.01.T01:CDS 30.0%
!!! ATCAGTGATTTTTGGGTTTA+GGG + Chr5:9578794-9578813 None:intergenic 30.0%
AAATGAAGCTATCCTTTGTC+TGG - Chr5:9578612-9578631 MsG0580024778.01.T01:CDS 35.0%
AACACATTGTAAGGGTCAAA+TGG + Chr5:9578583-9578602 None:intergenic 35.0%
AACGTATAATCCCAAGAATC+TGG - Chr5:9578905-9578924 MsG0580024778.01.T01:CDS 35.0%
AAGAATGTTCAGGAGACAAT+TGG - Chr5:9578881-9578900 MsG0580024778.01.T01:CDS 35.0%
AATGGAACTTCTTGACTCTA+GGG - Chr5:9579743-9579762 MsG0580024778.01.T01:CDS 35.0%
ACCTCAAGATACTTTGTGTT+AGG + Chr5:9578931-9578950 None:intergenic 35.0%
ACTTCATTAGGTTCTGTCAT+TGG + Chr5:9579072-9579091 None:intergenic 35.0%
AGAATGTTCAGGAGACAATT+GGG - Chr5:9578882-9578901 MsG0580024778.01.T01:CDS 35.0%
AGACAAAGGATAGCTTCATT+TGG + Chr5:9578613-9578632 None:intergenic 35.0%
ATAGGTGATGAATCATCATG+TGG + Chr5:9579138-9579157 None:intergenic 35.0%
ATGGTGTAAGACACTTCATT+AGG + Chr5:9579084-9579103 None:intergenic 35.0%
ATGTATACTCAGATGCTTTG+TGG - Chr5:9578649-9578668 MsG0580024778.01.T01:CDS 35.0%
CAACAGATATGTTCCTGATT+TGG - Chr5:9578441-9578460 MsG0580024778.01.T01:CDS 35.0%
CAGAAACAAAAACTCCAAGT+GGG - Chr5:9578500-9578519 MsG0580024778.01.T01:CDS 35.0%
CAGAAACTGAGTACTTGAAA+CGG - Chr5:9577913-9577932 MsG0580024778.01.T01:CDS 35.0%
GAATATCACCAACTCTGTAA+CGG + Chr5:9579260-9579279 None:intergenic 35.0%
GAGTCAAGAAGTTCCATTAT+AGG + Chr5:9579741-9579760 None:intergenic 35.0%
GATAACATAATGTCCAGGAA+TGG + Chr5:9579472-9579491 None:intergenic 35.0%
GATGAAGCATACATTGTACA+TGG + Chr5:9579021-9579040 None:intergenic 35.0%
GCCTACTATTCATCAAGAAA+TGG - Chr5:9578247-9578266 MsG0580024778.01.T01:CDS 35.0%
GGTTACCACTGTAATAATCA+AGG + Chr5:9578990-9579009 None:intergenic 35.0%
GTAACAAAATTAGCGAGTTC+GGG + Chr5:9578859-9578878 None:intergenic 35.0%
GTGAATGAAAATTGCAGTTC+AGG - Chr5:9578197-9578216 MsG0580024778.01.T01:CDS 35.0%
TAATGGAACTTCTTGACTCT+AGG - Chr5:9579742-9579761 MsG0580024778.01.T01:CDS 35.0%
TACACCATTATGCCAAACAT+GGG - Chr5:9579096-9579115 MsG0580024778.01.T01:CDS 35.0%
TATCTTGAGGTTATTGTCAC+TGG - Chr5:9578940-9578959 MsG0580024778.01.T01:CDS 35.0%
TGATTCAACACTTCTTCTGT+TGG + Chr5:9579531-9579550 None:intergenic 35.0%
TTACACCATTATGCCAAACA+TGG - Chr5:9579095-9579114 MsG0580024778.01.T01:CDS 35.0%
TTAGTCCATGACATTGAAAC+AGG - Chr5:9578766-9578785 MsG0580024778.01.T01:CDS 35.0%
TTCGGATAAAACAGACGAAT+CGG - Chr5:9579356-9579375 MsG0580024778.01.T01:CDS 35.0%
TTGAACTGAGTCAGTGTTTA+TGG + Chr5:9577859-9577878 None:intergenic 35.0%
TTGTAGTAAGCTGTTAGAAC+TGG + Chr5:9578538-9578557 None:intergenic 35.0%
! CTCTTTTCATCAACAGAAGA+AGG + Chr5:9577801-9577820 None:intergenic 35.0%
! TTGAAACGGTTTGGACTTAA+CGG - Chr5:9577927-9577946 MsG0580024778.01.T01:CDS 35.0%
! TTTTCATCAACAGAAGAAGG+TGG + Chr5:9577798-9577817 None:intergenic 35.0%
!! GGACTTGTTAACACATTGTA+AGG + Chr5:9578592-9578611 None:intergenic 35.0%
!! TATGTTCCTGATTTGGACAA+AGG - Chr5:9578448-9578467 MsG0580024778.01.T01:CDS 35.0%
!!! GATCAGTGATTTTTGGGTTT+AGG + Chr5:9578795-9578814 None:intergenic 35.0%
ACTGAGTACTTGAAACGGTT+TGG - Chr5:9577918-9577937 MsG0580024778.01.T01:CDS 40.0%
ATTGGATGAGAGGACAAGAT+CGG + Chr5:9578050-9578069 None:intergenic 40.0%
CCACTGTAATAATCAAGGGT+AGG + Chr5:9578985-9579004 None:intergenic 40.0%
CCTACCCTTGATTATTACAG+TGG - Chr5:9578982-9579001 MsG0580024778.01.T01:CDS 40.0%
CGCCTCACAAATTTGAATTG+AGG + Chr5:9579312-9579331 None:intergenic 40.0%
CGTGAGTTTCACTCCTATAA+TGG - Chr5:9579725-9579744 MsG0580024778.01.T01:CDS 40.0%
GACATGCACTGTTTGATAGA+AGG + Chr5:9578817-9578836 None:intergenic 40.0%
GACATTCAACGCATTGCTAA+CGG - Chr5:9578014-9578033 MsG0580024778.01.T01:CDS 40.0%
GACCTTGCTGATGTTGAAAT+CGG - Chr5:9579192-9579211 MsG0580024778.01.T01:intron 40.0%
GAGATACGTGTGGTGAAAAA+TGG - Chr5:9579630-9579649 MsG0580024778.01.T01:CDS 40.0%
GCAGAAACAAAAACTCCAAG+TGG - Chr5:9578499-9578518 MsG0580024778.01.T01:CDS 40.0%
GCATACATTGTACATGGCTT+TGG + Chr5:9579015-9579034 None:intergenic 40.0%
GCTGATACAAAATCCATTCC+TGG - Chr5:9579456-9579475 MsG0580024778.01.T01:intron 40.0%
GGTGATATTCTTCAAGTCAC+AGG - Chr5:9579270-9579289 MsG0580024778.01.T01:intron 40.0%
GTAACCCATGTTTGGCATAA+TGG + Chr5:9579103-9579122 None:intergenic 40.0%
GTCAGGTGAAAGATCTTCAT+AGG + Chr5:9577997-9578016 None:intergenic 40.0%
TGAATTGAGGATCGGAGTTA+TGG + Chr5:9579299-9579318 None:intergenic 40.0%
TTAGCAATGCGTTGAATGTC+AGG + Chr5:9578014-9578033 None:intergenic 40.0%
TTAGTCCTTCTCTACCTCAT+TGG - Chr5:9579781-9579800 MsG0580024778.01.T01:CDS 40.0%
TTCAACACTTCTTCTGTTGG+AGG + Chr5:9579528-9579547 None:intergenic 40.0%
TTCACCACACGTATCTCTAA+TGG + Chr5:9579627-9579646 None:intergenic 40.0%
TTGTGTTAGGCCAGATTCTT+GGG + Chr5:9578918-9578937 None:intergenic 40.0%
TTTGAAAGTTTCACGGTCAG+TGG + Chr5:9577955-9577974 None:intergenic 40.0%
TTTGTGTTAGGCCAGATTCT+TGG + Chr5:9578919-9578938 None:intergenic 40.0%
! ATGGATTATGCAATATCGCG+TGG - Chr5:9579669-9579688 MsG0580024778.01.T01:CDS 40.0%
! GCCTAACACAAAGTATCTTG+AGG - Chr5:9578927-9578946 MsG0580024778.01.T01:CDS 40.0%
! GCTTTTCCTTTGTCCAAATC+AGG + Chr5:9578457-9578476 None:intergenic 40.0%
! GGGATCCGGTTTAAGTATTT+TGG + Chr5:9578839-9578858 None:intergenic 40.0%
!! AAAAACTCCAAGTGGGTTAG+TGG - Chr5:9578507-9578526 MsG0580024778.01.T01:CDS 40.0%
!! AAACTCTGAGATTGGATGAG+AGG + Chr5:9578060-9578079 None:intergenic 40.0%
!! ACAACTTACTGGTTCATCAC+TGG + Chr5:9578305-9578324 None:intergenic 40.0%
!! ACATTGTACATGGCTTTGGT+AGG + Chr5:9579011-9579030 None:intergenic 40.0%
!! CGTGTTGTTGAGTATCGATT+CGG - Chr5:9579338-9579357 MsG0580024778.01.T01:CDS 40.0%
!! TACCGATTTCAACATCAGCA+AGG + Chr5:9579197-9579216 None:intergenic 40.0%
!! TAGGTTCTGTCATTGGCTTA+AGG + Chr5:9579065-9579084 None:intergenic 40.0%
AAATTAGCGAGTTCGGGATC+CGG + Chr5:9578853-9578872 None:intergenic 45.0%
CAATCTCAGAGTTTCTGACC+AGG - Chr5:9578066-9578085 MsG0580024778.01.T01:CDS 45.0%
CAGAAGAAGGTGGTTCCAAA+AGG + Chr5:9577788-9577807 None:intergenic 45.0%
GAACTTCATGGCGCATGATT+AGG + Chr5:9578675-9578694 None:intergenic 45.0%
GGCTGTACAATAACTGACGA+CGG + Chr5:9578274-9578293 None:intergenic 45.0%
GGGTTCCTGTTTCAATGTCA+TGG + Chr5:9578774-9578793 None:intergenic 45.0%
GGTGAAAAATGGCACGTTTG+AGG - Chr5:9579641-9579660 MsG0580024778.01.T01:CDS 45.0%
GTTGAGCTGAAGGAACCTAA+TGG + Chr5:9578737-9578756 None:intergenic 45.0%
TAGGTTCCTTCAGCTCAACT+GGG - Chr5:9578738-9578757 MsG0580024778.01.T01:CDS 45.0%
TGGACCATTAGAGATACGTG+TGG - Chr5:9579620-9579639 MsG0580024778.01.T01:CDS 45.0%
TGGCACGTTTGAGGAACTAA+TGG - Chr5:9579650-9579669 MsG0580024778.01.T01:CDS 45.0%
TTAGGTTCCTTCAGCTCAAC+TGG - Chr5:9578737-9578756 MsG0580024778.01.T01:CDS 45.0%
TTCTTCTGTTGGAGGATCAG+AGG + Chr5:9579520-9579539 None:intergenic 45.0%
! GGTTATTGTCACTGGTGCTA+TGG - Chr5:9578948-9578967 MsG0580024778.01.T01:CDS 45.0%
! TCAGCAAGGTCTACTAGCTT+TGG + Chr5:9579183-9579202 None:intergenic 45.0%
!! ATAGGTGATAACGGCGACTT+TGG + Chr5:9577979-9577998 None:intergenic 45.0%
!! CTGGTCAGAAACTCTGAGAT+TGG + Chr5:9578068-9578087 None:intergenic 45.0%
ATTCAGCCCAGTTGAGCTGA+AGG + Chr5:9578747-9578766 None:intergenic 50.0%
CGCCATGAAGTTCTTCGAGT+CGG - Chr5:9578682-9578701 MsG0580024778.01.T01:CDS 50.0%
GAGTCACGTGAGAGGGTTAT+AGG + Chr5:9579156-9579175 None:intergenic 50.0%
GCTGAAGGAACCTAATGGCT+CGG + Chr5:9578732-9578751 None:intergenic 50.0%
GGAGTCCAATGAGGTAGAGA+AGG + Chr5:9579789-9579808 None:intergenic 50.0%
GGTCTTTGCCGTTACAGAGT+TGG - Chr5:9579249-9579268 MsG0580024778.01.T01:intron 50.0%
GGTTCATCACTGGCATGAGT+AGG + Chr5:9578295-9578314 None:intergenic 50.0%
TGAAGTTCTTCGAGTCGGAG+CGG - Chr5:9578687-9578706 MsG0580024778.01.T01:CDS 50.0%
TGCAGTTCAGGAACATCAGC+TGG - Chr5:9578209-9578228 MsG0580024778.01.T01:CDS 50.0%
! CTCCGACTCGAAGAACTTCA+TGG + Chr5:9578687-9578706 None:intergenic 50.0%
! GGAACTTCTTGACTCTAGGG+TGG - Chr5:9579746-9579765 MsG0580024778.01.T01:CDS 50.0%
!! GCAAGGTCTACTAGCTTTGG+AGG + Chr5:9579180-9579199 None:intergenic 50.0%
GGAGTGAAACTCACGCACCT+AGG + Chr5:9579720-9579739 None:intergenic 55.0%
TGGAGGTGAGTCACGTGAGA+GGG + Chr5:9579163-9579182 None:intergenic 55.0%
TTGGAGGTGAGTCACGTGAG+AGG + Chr5:9579164-9579183 None:intergenic 55.0%
!! CGTCGTTCTGGAGTCCAATG+AGG + Chr5:9579798-9579817 None:intergenic 55.0%
! CCTAATGGCTCGGAGAAGCC+CGG + Chr5:9578722-9578741 None:intergenic 60.0%
! GGACGTGCCACTAACCCACT+TGG + Chr5:9578517-9578536 None:intergenic 60.0%
! GTCGGAGCGGTTTTCGCTTC+CGG - Chr5:9578700-9578719 MsG0580024778.01.T01:CDS 60.0%
! TCGGAGCGGTTTTCGCTTCC+GGG - Chr5:9578701-9578720 MsG0580024778.01.T01:CDS 60.0%
CCGGGCTTCTCCGAGCCATT+AGG - Chr5:9578719-9578738 MsG0580024778.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 9577765 9579824 9577765 ID=MsG0580024778.01;Name=MsG0580024778.01
Chr5 mRNA 9577765 9579824 9577765 ID=MsG0580024778.01.T01;Parent=MsG0580024778.01;Name=MsG0580024778.01.T01;_AED=0.14;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|600
Chr5 exon 9579502 9579824 9579502 ID=MsG0580024778.01.T01:exon:26509;Parent=MsG0580024778.01.T01
Chr5 exon 9579274 9579375 9579274 ID=MsG0580024778.01.T01:exon:26508;Parent=MsG0580024778.01.T01
Chr5 exon 9577765 9579142 9577765 ID=MsG0580024778.01.T01:exon:26507;Parent=MsG0580024778.01.T01
Chr5 CDS 9579502 9579824 9579502 ID=MsG0580024778.01.T01:cds;Parent=MsG0580024778.01.T01
Chr5 CDS 9579274 9579375 9579274 ID=MsG0580024778.01.T01:cds;Parent=MsG0580024778.01.T01
Chr5 CDS 9577765 9579142 9577765 ID=MsG0580024778.01.T01:cds;Parent=MsG0580024778.01.T01
Gene Sequence

>MsG0580024778.01.T01

ATGGCTGTTGAATCTGAAATCCTTTTGGAACCACCTTCTTCTGTTGATGAAAAGAGTCTAAACAATGCTCTTGAATTCATTGAAGAAATGACCATAAACACTGACTCAGTTCAAGAGAGAGTTCTCTCTGAGATTCTTGCACAAAACGCAGAAACTGAGTACTTGAAACGGTTTGGACTTAACGGTGCCACTGACCGTGAAACTTTCAAATCCAAAGTCGCCGTTATCACCTATGAAGATCTTTCACCTGACATTCAACGCATTGCTAACGGTGACACTTCTCCGATCTTGTCCTCTCATCCAATCTCAGAGTTTCTGACCAGTTCAGGAACATCAGCTGGTGAAAGAAAATTGATGCCTACTATTCATCAAGAAATGGACCGTCGTCAGTTATTGTACAGCCTACTCATGCCAGTGATGAACCAATATGTTCCTGATTTGGACAAAGGAAAAGCACTTCACTTTCTTTTCATCAAAGCAGAAACAAAAACTCCAAGTGGGTTAGTGGCACGTCCAGTTCTAACAGCTTACTACAAAAGTGAACAGTTCAAGAAAAGACCATTTGACCCTTACAATGTGTTAACAAGTCCAAATGAAGCTATCCTTTGTCTGGATTCATTTCAAAGCATGTATACTCAGATGCTTTGTGGCCTAATCATGCGCCATGAAGTTCTTCGAGTCGGAGCGGTTTTCGCTTCCGGGCTTCTCCGAGCCATTAGGTTCCTTCAGCTCAACTGGGCTGAATTAGTCCATGACATTGAAACAGGAACCCTAAACCCAAAAATCACTGATCCTTCTATCAAACAGTGCATGTCCAAAATACTTAAACCGGATCCCGAACTCGCTAATTTTGTTACAAAAGAATGTTCAGGAGACAATTGGGAACGTATAATCCCAAGAATCTGGCCTAACACAAAGTATCTTGAGGTTATTGTCACTGGTGCTATGGCTCAGTACATTCCTACCCTTGATTATTACAGTGGTAACCTACCAAAGCCATGTACAATGTATGCTTCATCTGAATGTTATTTTGGTCTTAACCTTAAGCCAATGACAGAACCTAATGAAGTGTCTTACACCATTATGCCAAACATGGGTTACTTTGAATTTTTACCACATGATGATTCATCACCTATAACCCTCTCACGTGACTCACCTCCAAAGCTAGTAGACCTTGCTGATGTTGAAATCGGTAAATCTTATGAGCTTATAATCACAACTTATTCAGGTCTTTGCCGTTACAGAGTTGGTGATATTCTTCAAGTCACAGGATTCCATAACTCCGATCCTCAATTCAAATTTGTGAGGCGAAAGAACGTGTTGTTGAGTATCGATTCGGATAAAACAGACGAATCGGAGCTTCAAAAAGCTATTGAAAATGCTTCTGAATTGTTAAAGGAGTTCAAAACAAGTGTTGTTGAATACACTAGTTTTGCTGATACAAAATCCATTCCTGGACATTATGTTATCTATTGGGAGCTTTTGATGAAAGATTCCTCTGATCCTCCAACAGAAGAAGTGTTGAATCAATGTTGTTTGGTTATGGAAGAGTCTTTGAATTCTGTTTATAGACAAGGAAGAGTAGCTGATAATTCAATTGGACCATTAGAGATACGTGTGGTGAAAAATGGCACGTTTGAGGAACTAATGGATTATGCAATATCGCGTGGTGCAAGCATTAATCAGTATAAAGTTCCTAGGTGCGTGAGTTTCACTCCTATAATGGAACTTCTTGACTCTAGGGTGGTTTCAGTTCATTTTAGTCCTTCTCTACCTCATTGGACTCCAGAACGACGTCGTTGA

Protein sequence

>MsG0580024778.01.T01

MAVESEILLEPPSSVDEKSLNNALEFIEEMTINTDSVQERVLSEILAQNAETEYLKRFGLNGATDRETFKSKVAVITYEDLSPDIQRIANGDTSPILSSHPISEFLTSSGTSAGERKLMPTIHQEMDRRQLLYSLLMPVMNQYVPDLDKGKALHFLFIKAETKTPSGLVARPVLTAYYKSEQFKKRPFDPYNVLTSPNEAILCLDSFQSMYTQMLCGLIMRHEVLRVGAVFASGLLRAIRFLQLNWAELVHDIETGTLNPKITDPSIKQCMSKILKPDPELANFVTKECSGDNWERIIPRIWPNTKYLEVIVTGAMAQYIPTLDYYSGNLPKPCTMYASSECYFGLNLKPMTEPNEVSYTIMPNMGYFEFLPHDDSSPITLSRDSPPKLVDLADVEIGKSYELIITTYSGLCRYRVGDILQVTGFHNSDPQFKFVRRKNVLLSIDSDKTDESELQKAIENASELLKEFKTSVVEYTSFADTKSIPGHYVIYWELLMKDSSDPPTEEVLNQCCLVMEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSVHFSPSLPHWTPERRR*