AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019217.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019217.01.T01 MTR_4g025730 100.000 257 0 0 1 257 253 509 0.0 532
MsG0480019217.01.T01 MTR_4g025690 79.537 259 51 1 1 257 255 513 1.16e-151 433
MsG0480019217.01.T01 MTR_8g104645 65.000 260 88 2 1 257 113 372 5.29e-125 360
MsG0480019217.01.T01 MTR_0458s0030 65.000 260 87 3 1 257 56 314 7.16e-123 352
MsG0480019217.01.T01 MTR_1g088040 65.000 260 87 3 1 257 56 314 7.16e-123 352
MsG0480019217.01.T01 MTR_8g104655 64.615 260 89 2 1 257 282 541 2.73e-122 359
MsG0480019217.01.T01 MTR_1g088020 65.000 260 87 3 1 257 297 555 1.01e-120 355
MsG0480019217.01.T01 MTR_1g054880 64.231 260 89 3 1 257 300 558 4.67e-119 351
MsG0480019217.01.T01 MTR_7g108905 63.672 256 90 2 1 253 297 552 8.35e-119 350
MsG0480019217.01.T01 MTR_4g025670 62.308 260 95 2 1 257 230 489 9.85e-118 345
MsG0480019217.01.T01 MTR_1g088225 64.231 260 87 4 1 257 297 553 2.47e-116 344
MsG0480019217.01.T01 MTR_1g083520 62.738 263 91 3 1 257 267 528 1.05e-115 342
MsG0480019217.01.T01 MTR_7g108890 63.462 260 91 3 1 257 304 562 4.21e-115 341
MsG0480019217.01.T01 MTR_0618s0020 66.960 227 72 2 34 257 2 228 1.76e-113 325
MsG0480019217.01.T01 MTR_7g108900 63.077 260 92 3 1 257 302 560 1.87e-113 337
MsG0480019217.01.T01 MTR_3g033690 62.069 261 95 3 1 257 266 526 1.19e-111 331
MsG0480019217.01.T01 MTR_7g108875 61.923 260 95 3 1 257 306 564 1.82e-111 332
MsG0480019217.01.T01 MTR_8g042910 61.923 260 95 3 1 257 354 612 2.23e-111 333
MsG0480019217.01.T01 MTR_3g008720 61.686 261 96 3 1 257 267 527 2.50e-111 330
MsG0480019217.01.T01 MTR_3g008640 61.686 261 96 3 1 257 267 527 5.94e-111 330
MsG0480019217.01.T01 MTR_3g008700 61.686 261 96 3 1 257 267 527 6.70e-111 329
MsG0480019217.01.T01 MTR_4g087980 60.000 260 101 2 1 257 257 516 8.58e-111 329
MsG0480019217.01.T01 MTR_7g053360 61.686 261 96 3 1 257 267 527 1.63e-110 328
MsG0480019217.01.T01 MTR_3g010770 61.923 260 95 3 1 257 317 575 4.50e-110 329
MsG0480019217.01.T01 MTR_4g035980 61.303 261 97 3 1 257 279 539 1.05e-108 324
MsG0480019217.01.T01 MTR_1g008140 58.846 260 104 2 1 257 348 607 1.49e-108 326
MsG0480019217.01.T01 MTR_8g023310 60.385 260 100 2 1 257 330 589 2.52e-108 325
MsG0480019217.01.T01 MTR_7g112580 58.915 258 98 2 1 257 292 542 1.57e-105 316
MsG0480019217.01.T01 MTR_3g091380 57.692 260 107 2 1 257 338 597 1.73e-105 318
MsG0480019217.01.T01 MTR_2g044880 57.692 260 107 2 1 257 266 525 3.13e-105 315
MsG0480019217.01.T01 MTR_7g050870 59.696 263 99 4 1 257 293 554 1.71e-104 314
MsG0480019217.01.T01 MTR_7g050980 58.935 263 101 4 1 257 294 555 8.41e-104 312
MsG0480019217.01.T01 MTR_8g042900 58.915 258 102 3 1 257 327 581 8.83e-102 308
MsG0480019217.01.T01 MTR_4g124520 55.725 262 110 4 1 257 261 521 4.03e-101 304
MsG0480019217.01.T01 MTR_3g010780 56.977 258 107 3 1 257 320 574 4.79e-101 305
MsG0480019217.01.T01 MTR_8g104580 55.985 259 80 3 1 257 274 500 1.02e-98 297
MsG0480019217.01.T01 MTR_2g044810 54.231 260 115 3 1 257 276 534 3.05e-98 297
MsG0480019217.01.T01 MTR_7g050950 57.034 263 105 5 1 257 293 553 1.11e-97 296
MsG0480019217.01.T01 MTR_2g044810 54.980 251 109 3 10 257 216 465 2.72e-96 290
MsG0480019217.01.T01 MTR_4g087970 52.692 260 120 2 1 257 258 517 2.63e-95 289
MsG0480019217.01.T01 MTR_4g124550 51.737 259 120 4 2 257 337 593 1.56e-87 271
MsG0480019217.01.T01 MTR_8g023150 50.965 259 124 3 1 257 325 582 2.08e-87 271
MsG0480019217.01.T01 MTR_8g093460 49.810 263 117 4 1 251 286 545 5.72e-86 266
MsG0480019217.01.T01 MTR_3g095920 50.558 269 117 4 1 256 298 563 1.20e-85 266
MsG0480019217.01.T01 MTR_1g086210 48.120 266 129 3 1 257 304 569 6.74e-85 264
MsG0480019217.01.T01 MTR_2g044660 48.638 257 128 4 2 257 379 632 4.24e-82 258
MsG0480019217.01.T01 MTR_1g083510 48.276 261 129 3 1 256 323 582 6.58e-80 251
MsG0480019217.01.T01 MTR_1g083470 47.692 260 127 5 1 253 309 566 1.52e-78 248
MsG0480019217.01.T01 MTR_1g083500 47.692 260 127 5 1 253 309 566 1.52e-78 248
MsG0480019217.01.T01 MTR_7g110560 46.743 261 131 5 2 257 292 549 1.80e-76 241
MsG0480019217.01.T01 MTR_1g086190 46.154 260 135 4 1 257 306 563 4.70e-76 241
MsG0480019217.01.T01 MTR_7g112590 46.947 262 132 4 1 256 322 582 4.91e-76 241
MsG0480019217.01.T01 MTR_4g005170 46.538 260 130 5 1 253 314 571 5.46e-76 242
MsG0480019217.01.T01 MTR_7g110490 46.154 260 132 3 1 252 310 569 1.78e-74 237
MsG0480019217.01.T01 MTR_7g110510 46.154 260 132 3 1 252 310 569 1.78e-74 237
MsG0480019217.01.T01 MTR_4g005180 45.769 260 132 5 1 253 296 553 3.18e-74 236
MsG0480019217.01.T01 MTR_1g083490 45.560 259 134 4 1 253 314 571 3.27e-74 236
MsG0480019217.01.T01 MTR_7g110440 43.774 265 141 3 1 257 310 574 4.00e-72 231
MsG0480019217.01.T01 MTR_4g120290 41.221 262 147 4 2 256 310 571 5.10e-69 223
MsG0480019217.01.T01 MTR_4g120280 41.445 263 145 4 2 256 310 571 2.29e-68 221
MsG0480019217.01.T01 MTR_8g088610 43.130 262 136 7 1 254 117 373 6.28e-65 207
MsG0480019217.01.T01 MTR_2g436050 41.985 262 145 4 2 256 302 563 1.72e-64 211
MsG0480019217.01.T01 MTR_0458s0010 45.833 264 94 7 1 257 297 518 7.25e-64 208
MsG0480019217.01.T01 MTR_2g436040 38.846 260 152 4 2 254 284 543 2.00e-63 209
MsG0480019217.01.T01 MTR_7g107180 41.085 258 140 4 2 257 60 307 1.21e-62 199
MsG0480019217.01.T01 MTR_2g105560 41.085 258 138 5 2 257 94 339 1.93e-61 197
MsG0480019217.01.T01 MTR_7g110420 40.072 277 146 4 1 257 310 586 6.77e-60 199
MsG0480019217.01.T01 MTR_5g083620 40.304 263 148 5 1 257 97 356 5.49e-58 188
MsG0480019217.01.T01 MTR_7g110430 37.879 264 124 3 1 257 310 540 9.64e-56 187
MsG0480019217.01.T01 MTR_7g111560 37.079 267 155 6 1 256 291 555 2.22e-53 181
MsG0480019217.01.T01 MTR_6g088810 40.541 259 125 9 2 246 134 377 8.94e-46 157
MsG0480019217.01.T01 MTR_8g102380 39.431 246 129 7 8 246 145 377 2.05e-44 154
MsG0480019217.01.T01 MTR_6g012800 38.326 227 127 5 14 240 82 295 1.42e-43 150
MsG0480019217.01.T01 MTR_6g024165 37.891 256 136 8 2 246 91 334 4.23e-42 147
MsG0480019217.01.T01 MTR_1g086540 36.402 239 134 5 12 246 120 344 4.78e-40 142
MsG0480019217.01.T01 MTR_7g011530 34.632 231 137 4 21 248 87 306 1.54e-38 137
MsG0480019217.01.T01 MTR_6g042660 34.025 241 132 7 1 232 88 310 1.03e-36 132
MsG0480019217.01.T01 MTR_7g092780 33.465 254 148 5 4 246 144 387 1.39e-36 133
MsG0480019217.01.T01 MTR_8g102380 41.053 190 95 5 8 190 145 324 9.47e-35 127
MsG0480019217.01.T01 MTR_5g083590 31.034 261 126 5 1 257 58 268 1.00e-34 125
MsG0480019217.01.T01 MTR_5g095490 35.808 229 127 5 24 246 143 357 1.05e-34 128
MsG0480019217.01.T01 MTR_1g033050 31.783 258 148 6 1 250 69 306 1.34e-33 124
MsG0480019217.01.T01 MTR_6g042690 34.361 227 121 6 3 219 95 303 1.35e-33 124
MsG0480019217.01.T01 MTR_2g039530 35.398 226 133 5 1 223 103 318 4.01e-32 120
MsG0480019217.01.T01 MTR_2g033970 32.806 253 150 6 1 246 107 346 1.42e-31 119
MsG0480019217.01.T01 MTR_5g088300 34.434 212 127 4 38 248 118 318 1.25e-30 116
MsG0480019217.01.T01 MTR_5g012600 32.328 232 139 5 24 249 143 362 4.95e-30 115
MsG0480019217.01.T01 MTR_5g093970 33.992 253 147 7 1 248 94 331 5.22e-30 115
MsG0480019217.01.T01 MTR_4g124740 32.018 228 130 5 24 246 132 339 2.32e-29 113
MsG0480019217.01.T01 MTR_4g051810 35.407 209 122 5 42 248 122 319 2.00e-28 110
MsG0480019217.01.T01 MTR_7g102600 31.274 259 154 5 1 248 150 395 9.86e-28 110
MsG0480019217.01.T01 MTR_5g088290 33.019 212 130 4 38 248 130 330 3.95e-27 107
MsG0480019217.01.T01 MTR_5g088280 32.468 231 139 5 19 248 106 320 8.92e-27 106
MsG0480019217.01.T01 MTR_2g436600 31.102 254 144 8 1 246 106 336 1.60e-26 105
MsG0480019217.01.T01 MTR_4g074290 29.004 231 143 6 24 246 144 361 1.75e-25 103
MsG0480019217.01.T01 MTR_2g073390 27.706 231 146 5 24 246 144 361 1.85e-24 100
MsG0480019217.01.T01 MTR_0009s0350 28.947 228 147 4 24 246 144 361 3.26e-24 100
MsG0480019217.01.T01 MTR_0009s0340 28.947 228 147 4 24 246 144 361 3.26e-24 100
MsG0480019217.01.T01 MTR_8g036225 28.807 243 154 4 14 246 89 322 7.22e-24 98.6
MsG0480019217.01.T01 MTR_0408s0030 37.895 95 52 1 125 219 36 123 2.70e-17 77.0
MsG0480019217.01.T01 MTR_6g025590 40.000 110 58 2 2 103 101 210 2.34e-16 76.3
MsG0480019217.01.T01 MTR_6g024200 34.591 159 83 7 90 246 137 276 4.63e-15 73.6
MsG0480019217.01.T01 MTR_4g130790 30.808 198 108 7 1 188 76 254 6.45e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019217.01.T01 AT2G45220 77.992 259 54 2 1 257 254 511 1.13e-143 412
MsG0480019217.01.T01 AT4G00190 62.646 257 96 0 1 257 218 474 2.26e-115 339
MsG0480019217.01.T01 AT2G47550 64.231 260 89 3 1 257 300 558 1.52e-114 340
MsG0480019217.01.T01 AT4G02330 61.154 260 97 3 1 257 313 571 4.05e-114 339
MsG0480019217.01.T01 AT5G51490 64.885 262 87 4 1 257 275 536 8.18e-114 337
MsG0480019217.01.T01 AT1G02810 61.538 260 96 3 1 257 319 577 6.72e-113 336
MsG0480019217.01.T01 AT1G23200 60.465 258 94 2 1 257 304 554 2.12e-111 332
MsG0480019217.01.T01 AT5G53370 60.769 260 99 2 1 257 326 585 1.03e-109 328
MsG0480019217.01.T01 AT3G60730 58.462 260 105 2 1 257 260 519 1.89e-109 325
MsG0480019217.01.T01 AT5G53370 60.769 260 99 2 1 257 362 621 2.76e-109 328
MsG0480019217.01.T01 AT3G05620 60.853 258 92 3 1 257 292 541 3.49e-108 323
MsG0480019217.01.T01 AT1G53830 59.615 260 102 2 1 257 328 587 1.35e-107 323
MsG0480019217.01.T01 AT3G59010 60.700 257 94 1 1 257 279 528 1.76e-107 321
MsG0480019217.01.T01 AT5G51500 61.832 262 95 3 1 257 279 540 3.33e-107 320
MsG0480019217.01.T01 AT3G49220 60.385 260 100 2 1 257 337 596 3.79e-107 322
MsG0480019217.01.T01 AT3G49220 60.385 260 100 2 1 257 382 641 9.25e-107 322
MsG0480019217.01.T01 AT1G11580 60.000 260 101 2 1 257 298 557 9.30e-107 320
MsG0480019217.01.T01 AT4G02320 56.538 260 110 2 1 257 259 518 1.05e-106 318
MsG0480019217.01.T01 AT3G14310 58.462 260 105 2 1 257 333 592 1.70e-106 320
MsG0480019217.01.T01 AT1G11580 60.000 260 101 2 1 257 319 578 2.47e-106 319
MsG0480019217.01.T01 AT3G10720 57.308 260 107 3 1 257 1 259 2.79e-106 308
MsG0480019217.01.T01 AT3G43270 57.692 260 107 2 1 257 266 525 1.24e-104 313
MsG0480019217.01.T01 AT3G10720 57.308 260 107 3 1 257 357 615 5.88e-103 312
MsG0480019217.01.T01 AT4G02300 55.769 260 112 2 1 257 273 532 9.82e-103 309
MsG0480019217.01.T01 AT4G33220 56.154 260 111 2 1 257 143 402 2.86e-102 303
MsG0480019217.01.T01 AT2G43050 57.752 258 101 2 1 257 266 516 3.59e-102 307
MsG0480019217.01.T01 AT4G33220 56.154 260 111 2 1 257 264 523 2.81e-101 305
MsG0480019217.01.T01 AT5G04970 57.308 260 107 3 1 257 362 620 1.58e-100 306
MsG0480019217.01.T01 AT3G47400 60.305 262 99 3 1 257 333 594 1.66e-100 305
MsG0480019217.01.T01 AT5G04960 53.906 256 115 2 1 255 309 562 1.59e-97 296
MsG0480019217.01.T01 AT3G10710 55.039 258 112 3 1 257 307 561 2.85e-95 290
MsG0480019217.01.T01 AT2G26440 53.077 260 118 3 1 257 289 547 3.30e-93 285
MsG0480019217.01.T01 AT2G26450 52.692 260 117 5 2 257 354 611 8.05e-92 283
MsG0480019217.01.T01 AT3G05610 50.000 260 126 3 1 257 307 565 6.30e-90 280
MsG0480019217.01.T01 AT5G49180 52.549 255 116 4 3 253 313 566 2.24e-89 275
MsG0480019217.01.T01 AT4G33230 53.462 260 115 5 2 257 349 606 4.33e-89 276
MsG0480019217.01.T01 AT5G27870 49.231 260 128 3 1 257 304 562 4.92e-88 276
MsG0480019217.01.T01 AT1G53840 51.779 253 117 3 1 251 332 581 7.79e-87 269
MsG0480019217.01.T01 AT3G06830 49.615 260 126 4 2 257 310 568 4.73e-86 267
MsG0480019217.01.T01 AT5G20860 50.382 262 123 4 2 257 278 538 2.19e-85 264
MsG0480019217.01.T01 AT1G11590 48.249 257 132 1 2 257 268 524 3.90e-84 261
MsG0480019217.01.T01 AT3G27980 47.082 257 135 1 2 257 241 497 6.62e-84 259
MsG0480019217.01.T01 AT4G03930 47.471 257 134 1 2 257 268 524 7.49e-83 257
MsG0480019217.01.T01 AT5G64640 48.669 263 119 4 1 250 343 602 4.02e-81 255
MsG0480019217.01.T01 AT4G15980 49.035 259 127 4 1 255 443 700 4.10e-81 257
MsG0480019217.01.T01 AT4G15980 49.035 259 127 4 1 255 453 710 6.21e-81 257
MsG0480019217.01.T01 AT5G09760 49.416 257 115 5 1 245 293 546 6.29e-79 248
MsG0480019217.01.T01 AT5G09760 49.416 257 115 5 1 245 319 572 9.29e-79 248
MsG0480019217.01.T01 AT3G14300 49.393 247 118 4 4 246 715 958 2.39e-76 249
MsG0480019217.01.T01 AT5G20860 51.327 226 104 3 4 223 252 477 6.70e-75 236
MsG0480019217.01.T01 AT3G62170 42.748 262 142 5 2 257 329 588 2.19e-61 203
MsG0480019217.01.T01 AT2G47030 43.511 262 140 5 2 257 329 588 2.46e-61 203
MsG0480019217.01.T01 AT2G47040 43.130 262 141 5 2 257 336 595 4.19e-59 197
MsG0480019217.01.T01 AT1G11370 48.691 191 95 2 2 189 98 288 5.54e-59 189
MsG0480019217.01.T01 AT5G19730 37.500 256 137 6 2 246 138 381 1.65e-42 149
MsG0480019217.01.T01 AT3G29090 38.191 199 115 2 21 219 88 278 2.61e-40 141
MsG0480019217.01.T01 AT2G36700 33.466 251 152 3 1 246 93 333 7.31e-39 138
MsG0480019217.01.T01 AT1G05310 33.203 256 150 5 2 246 143 388 1.32e-35 131
MsG0480019217.01.T01 AT2G36710 34.286 245 140 7 15 251 159 390 6.20e-35 129
MsG0480019217.01.T01 AT3G17060 31.765 255 150 6 1 246 97 336 1.10e-32 122
MsG0480019217.01.T01 AT2G19150 33.080 263 149 7 2 253 93 339 1.37e-32 122
MsG0480019217.01.T01 AT2G21610 30.973 226 143 4 21 246 125 337 1.16e-31 120
MsG0480019217.01.T01 AT2G21610 30.973 226 143 4 21 246 120 332 1.29e-31 119
MsG0480019217.01.T01 AT5G47500 32.906 234 139 6 19 246 136 357 6.11e-31 118
MsG0480019217.01.T01 AT5G55590 33.333 249 144 6 8 246 142 378 3.83e-30 116
MsG0480019217.01.T01 AT5G18990 34.764 233 130 5 26 246 101 323 5.48e-30 115
MsG0480019217.01.T01 AT3G24130 32.218 239 140 5 26 252 106 334 2.46e-28 110
MsG0480019217.01.T01 AT5G07430 31.278 227 141 4 24 246 140 355 4.27e-28 110
MsG0480019217.01.T01 AT5G26810 34.171 199 116 6 55 248 147 335 1.44e-27 108
MsG0480019217.01.T01 AT1G44980 48.214 112 58 0 2 113 130 241 3.70e-27 105
MsG0480019217.01.T01 AT5G55590 35.233 193 106 4 8 190 142 325 6.77e-27 106
MsG0480019217.01.T01 AT2G47280 31.518 257 148 6 2 246 87 327 2.28e-25 102
MsG0480019217.01.T01 AT2G19150 34.343 198 110 5 2 190 93 279 3.99e-25 100
MsG0480019217.01.T01 AT5G61680 28.509 228 147 4 24 246 142 358 1.87e-22 95.1
MsG0480019217.01.T01 AT5G07420 29.075 227 146 4 24 246 140 355 2.59e-22 94.7
MsG0480019217.01.T01 AT5G07410 26.316 228 152 4 24 246 139 355 7.45e-21 90.5
MsG0480019217.01.T01 AT1G69940 26.316 228 152 4 24 246 139 355 7.45e-21 90.5

Find 123 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTGTTCTATTGTATTT+AGG 0.188538 4:+16320648 MsG0480019217.01.T01:three_prime_UTR
TGTATTACTAGTTAGTTTAT+TGG 0.189679 4:+16320629 MsG0480019217.01.T01:three_prime_UTR
GGGACAGTTGATTTCATCTT+TGG 0.221019 4:+16319964 MsG0480019217.01.T01:CDS
GAATTATAATTCATAATTCT+AGG 0.221921 4:+16320094 MsG0480019217.01.T01:CDS
TGGTTGATTGAAAGCATTAT+TGG 0.239601 4:-16317412 None:intergenic
TACAGAGAATGTAACATCTA+TGG 0.256911 4:+16319943 MsG0480019217.01.T01:CDS
TTGGCTACACCATGATTTAA+TGG 0.264126 4:-16317355 None:intergenic
GAGAAGGGTTTATGAGGTTT+TGG 0.290145 4:-16317205 None:intergenic
CAGGTTCATCTACTTCAAAT+AGG 0.299482 4:+16320307 MsG0480019217.01.T01:CDS
TTCATGAAAACTGTTCTTGA+TGG 0.322264 4:+16320198 MsG0480019217.01.T01:CDS
AAGCTGTACTAAGCCATGTT+TGG 0.344214 4:-16317638 None:intergenic
TACTCACATGGTTGAGGATA+AGG 0.351224 4:-16317381 None:intergenic
CAAGCTGTTGCATTTCGTTC+CGG 0.356258 4:+16319841 MsG0480019217.01.T01:CDS
ACCGTTGGGAATTTCATTGC+CGG 0.366873 4:+16320384 MsG0480019217.01.T01:CDS
GAATATGCTAATACAGGTTC+AGG 0.371500 4:+16320288 MsG0480019217.01.T01:CDS
ATCTTATGAACAATTCAGTA+TGG 0.376273 4:-16320531 None:intergenic
AGCTGTACTAAGCCATGTTT+GGG 0.379379 4:-16317637 None:intergenic
ATTTCATTGCCGGTAATTCA+TGG 0.379520 4:+16320394 MsG0480019217.01.T01:CDS
CATCTTTGTAACTTGGTTGT+TGG 0.388751 4:-16317788 None:intergenic
CTGGACTTTAAGCGTTCCTT+TGG 0.395121 4:+16320445 MsG0480019217.01.T01:exon
GTTTCCTATCCATGAATTAC+CGG 0.395370 4:-16320403 None:intergenic
AACTTAGAGAAGGGTTTATG+AGG 0.395587 4:-16317211 None:intergenic
ACTCACATGGTTGAGGATAA+GGG 0.396273 4:-16317380 None:intergenic
ACAATAGTGGAGAAAAGAAA+TGG 0.403364 4:-16317312 None:intergenic
AGGTTCATCTACTTCAAATA+GGG 0.407994 4:+16320308 MsG0480019217.01.T01:CDS
ATGGTTGAGGATAAGGGGTT+TGG 0.413369 4:-16317374 None:intergenic
TCTTGTGGGCTACGGCACTT+AGG 0.413550 4:-16317522 None:intergenic
CGTCGTTGCTAAGGATGGTT+CGG 0.414368 4:+16317883 MsG0480019217.01.T01:five_prime_UTR
TTGTAACTTGGTTGTTGGTA+AGG 0.414505 4:-16317783 None:intergenic
TTCTAGGGTTTCCGCTCAAT+CGG 0.419321 4:+16320110 MsG0480019217.01.T01:CDS
TTTGCAGCTGCTACTGGTGA+TGG 0.425142 4:+16319766 MsG0480019217.01.T01:intron
GTCGTTGCTAAGGATGGTTC+GGG 0.434190 4:+16317884 MsG0480019217.01.T01:five_prime_UTR
GAATTGTTCATAAGATCAAT+TGG 0.440829 4:+16320538 MsG0480019217.01.T01:three_prime_UTR
TTATTTAAAAGAATTGTTGT+TGG 0.441698 4:+16320727 MsG0480019217.01.T01:three_prime_UTR
AGTTTCACTTGAACTTGCTA+TGG 0.444556 4:+16317458 MsG0480019217.01.T01:five_prime_UTR
AACTTCTTCCGCGGCTTCGA+AGG 0.447444 4:+16317853 MsG0480019217.01.T01:five_prime_UTR
GGCTAATGTCGTCGTTGCTA+AGG 0.459522 4:+16317874 MsG0480019217.01.T01:five_prime_UTR
CTTGTGGGCTACGGCACTTA+GGG 0.460985 4:-16317521 None:intergenic
TATGCTGAATATGCTAATAC+AGG 0.469023 4:+16320282 MsG0480019217.01.T01:CDS
CATTAAGTTCCATTAAATCA+TGG 0.471538 4:+16317346 MsG0480019217.01.T01:five_prime_UTR
CAAGCTTCACCTTTCACCGT+TGG 0.471593 4:+16320369 MsG0480019217.01.T01:CDS
AAGCTTCACCTTTCACCGTT+GGG 0.472202 4:+16320370 MsG0480019217.01.T01:CDS
CTACTTCAAATAGGGTTACA+TGG 0.478202 4:+16320316 MsG0480019217.01.T01:CDS
ATGAAATTCCCAACGGTGAA+AGG 0.479388 4:-16320378 None:intergenic
CAACAACCAAGTTACAAAGA+TGG 0.480845 4:+16317789 MsG0480019217.01.T01:five_prime_UTR
CCCTGCTGGTTGGTTACCAT+GGG 0.482029 4:+16320230 MsG0480019217.01.T01:CDS
TCCTTGCGCGGTAACTGTGA+TGG 0.482943 4:-16320046 None:intergenic
TCGTTCCGGCTCCGATCTAT+CGG 0.484411 4:+16319855 MsG0480019217.01.T01:CDS
AATTATAATTCATAATTCTA+GGG 0.485667 4:+16320095 MsG0480019217.01.T01:CDS
ACAGGCGTGCCATTCACCTC+TGG 0.485673 4:+16320426 MsG0480019217.01.T01:CDS
TGAGTAACCATAAACAATAG+TGG 0.489662 4:-16317325 None:intergenic
GGAAATCCATCTTTGTAACT+TGG 0.499245 4:-16317795 None:intergenic
ATTGCCGGTAATTCATGGAT+AGG 0.500552 4:+16320399 MsG0480019217.01.T01:CDS
TCCCATGGTAACCAACCAGC+AGG 0.502238 4:-16320231 None:intergenic
ACAGAGAATGTAACATCTAT+GGG 0.505050 4:+16319944 MsG0480019217.01.T01:CDS
ACCCTGCTGGTTGGTTACCA+TGG 0.509749 4:+16320229 MsG0480019217.01.T01:CDS
AGGTACGATTTAACAGAACT+AGG 0.510850 4:-16320141 None:intergenic
TAACTAGTAATACATTTGAA+TGG 0.513519 4:-16320620 None:intergenic
GATGCTGCACCAAGTGGTAG+TGG 0.515780 4:+16317935 MsG0480019217.01.T01:five_prime_UTR
TTGAAGAAGTTTCTATCACC+AGG 0.521393 4:-16317831 None:intergenic
ATGTTGGTGGGTGATGGTAT+TGG 0.525394 4:+16318025 MsG0480019217.01.T01:CDS
GGTACGATTTAACAGAACTA+GGG 0.528470 4:-16320140 None:intergenic
TCACCAGGTTTAACCCATGT+TGG 0.531989 4:-16317816 None:intergenic
TCAAATAGGGTTACATGGAA+AGG 0.533882 4:+16320321 MsG0480019217.01.T01:CDS
AAATAATACTCACATGGTTG+AGG 0.534999 4:-16317387 None:intergenic
ATTGGTAAAACCATAATCAC+TGG 0.538242 4:+16318043 MsG0480019217.01.T01:CDS
ATCACATTCAGAAACACTGC+TGG 0.539268 4:+16319805 MsG0480019217.01.T01:CDS
ATGATGAGAAACTTAGAGAA+GGG 0.541566 4:-16317220 None:intergenic
ATCACTGGTAGCAAAAGTGT+TGG 0.542034 4:+16318058 MsG0480019217.01.T01:CDS
CTCACATGGTTGAGGATAAG+GGG 0.542503 4:-16317379 None:intergenic
ACCATCACAGTTACCGCGCA+AGG 0.543990 4:+16320045 MsG0480019217.01.T01:CDS
TTTGTAAAATACCGATAGAT+CGG 0.549087 4:-16319866 None:intergenic
ACAAAGATGGATTTCCAACA+TGG 0.557740 4:+16317802 MsG0480019217.01.T01:five_prime_UTR
AATGTCGTCGTTGCTAAGGA+TGG 0.559942 4:+16317878 MsG0480019217.01.T01:five_prime_UTR
AATGTCATGTTGGTGGGTGA+TGG 0.561648 4:+16318019 MsG0480019217.01.T01:exon
ACTGGTAGCAAAAGTGTTGG+AGG 0.563435 4:+16318061 MsG0480019217.01.T01:CDS
TAAAGCAAAGAATGTCATGT+TGG 0.567010 4:+16318009 MsG0480019217.01.T01:exon
ATTATAAGAGTTGTTACCAA+AGG 0.567706 4:-16317285 None:intergenic
ACCGATCCAAATCAAAACAC+TGG 0.569193 4:+16320072 MsG0480019217.01.T01:CDS
CACAATATGAATCCCAAACA+TGG 0.578929 4:+16317625 MsG0480019217.01.T01:five_prime_UTR
AAATACCGATAGATCGGAGC+CGG 0.582499 4:-16319860 None:intergenic
GCTTAAAGTCCAGAGGTGAA+TGG 0.586097 4:-16320435 None:intergenic
TTTCCAACATGGGTTAAACC+TGG 0.589586 4:+16317813 MsG0480019217.01.T01:five_prime_UTR
GTTACATTATTAGACAACAA+AGG 0.594044 4:-16317723 None:intergenic
AGCAAAGAATGTCATGTTGG+TGG 0.597389 4:+16318012 MsG0480019217.01.T01:exon
TATGATGAGAAACTTAGAGA+AGG 0.598833 4:-16317221 None:intergenic
TATGTGATATATGTGAAGGC+TGG 0.599695 4:+16317962 MsG0480019217.01.T01:five_prime_UTR
GGGCAAGTACACGACGGTGA+AGG 0.602626 4:+16317904 MsG0480019217.01.T01:five_prime_UTR
ATAAATTCACGCGATTCCAA+AGG 0.602880 4:-16320461 None:intergenic
AGTTCTGTTAAATCGTACCT+TGG 0.604307 4:+16320144 MsG0480019217.01.T01:CDS
GCTGGTTGGTTACCATGGGA+TGG 0.604546 4:+16320234 MsG0480019217.01.T01:CDS
CTGCACCAAGTGGTAGTGGA+AGG 0.608150 4:+16317939 MsG0480019217.01.T01:five_prime_UTR
AAAGCAAAATTACCATCCCA+TGG 0.612268 4:-16320246 None:intergenic
CACGACGGTGAAGGCCGCGA+CGG 0.612289 4:+16317913 MsG0480019217.01.T01:five_prime_UTR
ACATTCCGTTCAGCAACCGT+TGG 0.617969 4:+16318094 MsG0480019217.01.T01:CDS
GACATTAGCCTTCGAAGCCG+CGG 0.622925 4:-16317861 None:intergenic
TAACACCTTGTCACTCAACA+AGG 0.624473 4:+16317758 MsG0480019217.01.T01:five_prime_UTR
CAAAGATGGATTTCCAACAT+GGG 0.627787 4:+16317803 MsG0480019217.01.T01:five_prime_UTR
AGGGTTTAAATCCGATTGAG+CGG 0.629087 4:-16320121 None:intergenic
GCAAAGAATGTCATGTTGGT+GGG 0.630792 4:+16318013 MsG0480019217.01.T01:exon
ACTTCTTCAAACTTCTTCCG+CGG 0.632926 4:+16317844 MsG0480019217.01.T01:five_prime_UTR
ACTTACCAACGGTTGCTGAA+CGG 0.633760 4:-16318099 None:intergenic
ACATACCTTCCACTACCACT+TGG 0.638708 4:-16317944 None:intergenic
GGTAGCAAAAGTGTTGGAGG+TGG 0.640198 4:+16318064 MsG0480019217.01.T01:CDS
GTGAAGCACTAGTAAGAACA+TGG 0.641780 4:-16320347 None:intergenic
GAAGAAAATACACATGCACT+TGG 0.644990 4:+16317498 MsG0480019217.01.T01:five_prime_UTR
TTGGTTAAATAATACTCACA+TGG 0.648130 4:-16317393 None:intergenic
TGGATCGGTTCTTCCTTGCG+CGG 0.648642 4:-16320058 None:intergenic
AAGGTATGTGATATATGTGA+AGG 0.653633 4:+16317958 MsG0480019217.01.T01:five_prime_UTR
AGGAACCTTGTTGAGTGACA+AGG 0.656613 4:-16317763 None:intergenic
GCGACGGATGCTGCACCAAG+TGG 0.664715 4:+16317929 MsG0480019217.01.T01:five_prime_UTR
CCCATGGTAACCAACCAGCA+GGG 0.670836 4:-16320230 None:intergenic
ACCGGCAATGAAATTCCCAA+CGG 0.671958 4:-16320385 None:intergenic
TTAATTGAGAACTAATCACA+AGG 0.685708 4:-16320565 None:intergenic
AATTCATGGATAGGAAACAC+AGG 0.687418 4:+16320408 MsG0480019217.01.T01:CDS
AAGGAACGCTTAAAGTCCAG+AGG 0.689657 4:-16320442 None:intergenic
ACTTGGTGCAGCATCCGTCG+CGG 0.690402 4:-16317927 None:intergenic
AGACATAGTTTGTGACACCA+AGG 0.696122 4:-16317698 None:intergenic
AATCGTACCTTGGTAGACCG+TGG 0.701912 4:+16320154 MsG0480019217.01.T01:CDS
TGAATTTATCAGAATCACAG+TGG 0.728182 4:+16320475 MsG0480019217.01.T01:three_prime_UTR
GGTTGCTGAACGGAATGTAG+TGG 0.731392 4:-16318089 None:intergenic
TGGTTCGGGCAAGTACACGA+CGG 0.758627 4:+16317898 MsG0480019217.01.T01:five_prime_UTR
TTTCATCTTTGGAAACGCCG+CGG 0.774990 4:+16319975 MsG0480019217.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATATTTAAATTAA+TGG - Chr4:16318437-16318456 None:intergenic 0.0%
!! AAATAAATAATTATATCAGT+AGG + Chr4:16318704-16318723 MsG0480019217.01.T01:intron 10.0%
!! AAATATAACAAATAACTTAA+AGG - Chr4:16318586-16318605 None:intergenic 10.0%
!! AATAAATAATTATATCAGTA+GGG + Chr4:16318705-16318724 MsG0480019217.01.T01:intron 10.0%
!! AATTATAATTCATAATTCTA+GGG + Chr4:16320095-16320114 MsG0480019217.01.T01:CDS 10.0%
!! TTCTTATTAATCATTAATTA+AGG - Chr4:16319046-16319065 None:intergenic 10.0%
!!! TAACAATACAATTAATTTTT+TGG - Chr4:16320696-16320715 None:intergenic 10.0%
!! AAAAAAATCGGATTTATTTA+TGG - Chr4:16317435-16317454 None:intergenic 15.0%
!! AAAATTAATTTAACTCTAGA+TGG - Chr4:16318522-16318541 None:intergenic 15.0%
!! ATAAATAATTATATCAGTAG+GGG + Chr4:16318706-16318725 MsG0480019217.01.T01:intron 15.0%
!! GAAAGAAAAATAATTTAGTA+CGG + Chr4:16320670-16320689 MsG0480019217.01.T01:three_prime_UTR 15.0%
!! GAATAATTATTTATATCCTT+TGG - Chr4:16318914-16318933 None:intergenic 15.0%
!! GAATTATAATTCATAATTCT+AGG + Chr4:16320094-16320113 MsG0480019217.01.T01:CDS 15.0%
!! TTAAGATAATATATCATAGA+AGG - Chr4:16318984-16319003 None:intergenic 15.0%
!! TTATTTAAAAGAATTGTTGT+TGG + Chr4:16320727-16320746 MsG0480019217.01.T01:three_prime_UTR 15.0%
!! TTCAATTAAATCAATTATTG+TGG - Chr4:16319078-16319097 None:intergenic 15.0%
!! TTTAATTAAAAGAAGAATGT+GGG + Chr4:16319511-16319530 MsG0480019217.01.T01:intron 15.0%
!!! ATTACTTTAAAATCTCTTTA+CGG + Chr4:16318957-16318976 MsG0480019217.01.T01:intron 15.0%
!!! ATTCAATTCATTATGTTTTT+GGG - Chr4:16319114-16319133 None:intergenic 15.0%
!!! TATTCAATTCATTATGTTTT+TGG - Chr4:16319115-16319134 None:intergenic 15.0%
!!! TTTACAAAAAAAAAAAGTGT+TGG + Chr4:16318547-16318566 MsG0480019217.01.T01:intron 15.0%
!! ACACTTTAACTAATTCTTAT+TGG + Chr4:16319412-16319431 MsG0480019217.01.T01:intron 20.0%
!! ATGTAAATGATTCAAATCAT+AGG - Chr4:16319174-16319193 None:intergenic 20.0%
!! CATTAAGGAAAATATAATCT+AGG - Chr4:16319364-16319383 None:intergenic 20.0%
!! CTAGTTTATGATTTAGTTAT+TGG - Chr4:16318286-16318305 None:intergenic 20.0%
!! CTTTAATTAAAAGAAGAATG+TGG + Chr4:16319510-16319529 MsG0480019217.01.T01:intron 20.0%
!! GAAAATTACTTATGAATGAT+AGG + Chr4:16318471-16318490 MsG0480019217.01.T01:intron 20.0%
!! GAATAAGACTATATTAAAGT+GGG - Chr4:16319479-16319498 None:intergenic 20.0%
!! TAACTAGTAATACATTTGAA+TGG - Chr4:16320623-16320642 None:intergenic 20.0%
!! TATGATTTGAATCATTTACA+TGG + Chr4:16319173-16319192 MsG0480019217.01.T01:intron 20.0%
!! TGAATAAGACTATATTAAAG+TGG - Chr4:16319480-16319499 None:intergenic 20.0%
!! TTAATTAAAAGAAGAATGTG+GGG + Chr4:16319512-16319531 MsG0480019217.01.T01:intron 20.0%
!! TTCAACTGATTATTAACTTA+TGG - Chr4:16319555-16319574 None:intergenic 20.0%
!!! AAAATTATTTTAGGGTATGA+TGG - Chr4:16317247-16317266 None:intergenic 20.0%
!!! ACCCTAAAATAATTTTTCAA+TGG + Chr4:16317251-16317270 MsG0480019217.01.T01:five_prime_UTR 20.0%
!!! AGATTTTAAAGTAATCACAA+TGG - Chr4:16318952-16318971 None:intergenic 20.0%
!!! AGCCATTGAAAAATTATTTT+AGG - Chr4:16317256-16317275 None:intergenic 20.0%
!!! AGTGAAACTTTGAAAAAAAT+CGG - Chr4:16317447-16317466 None:intergenic 20.0%
!!! CACATTCTTCTTTTAATTAA+AGG - Chr4:16319512-16319531 None:intergenic 20.0%
!!! GCCATTGAAAAATTATTTTA+GGG - Chr4:16317255-16317274 None:intergenic 20.0%
!!! TGCATAAGATTTTTCAATAA+AGG - Chr4:16318316-16318335 None:intergenic 20.0%
!!! TGTATTACTAGTTAGTTTAT+TGG + Chr4:16320629-16320648 MsG0480019217.01.T01:three_prime_UTR 20.0%
! ACATAATGAATTGAATATCG+TGG + Chr4:16319118-16319137 MsG0480019217.01.T01:intron 25.0%
! ACTTATGAATGATAGGTAAA+CGG + Chr4:16318478-16318497 MsG0480019217.01.T01:intron 25.0%
! ATCATAGGCTAAAACTTTAT+TGG - Chr4:16319159-16319178 None:intergenic 25.0%
! ATCTTATGAACAATTCAGTA+TGG - Chr4:16320534-16320553 None:intergenic 25.0%
! ATTATAAGAGTTGTTACCAA+AGG - Chr4:16317288-16317307 None:intergenic 25.0%
! CATTAAGTTCCATTAAATCA+TGG + Chr4:16317346-16317365 MsG0480019217.01.T01:five_prime_UTR 25.0%
! GAATTGTTCATAAGATCAAT+TGG + Chr4:16320538-16320557 MsG0480019217.01.T01:three_prime_UTR 25.0%
! GTTACATTATTAGACAACAA+AGG - Chr4:16317726-16317745 None:intergenic 25.0%
! TATGTAGCTTTCAAAAATGA+AGG + Chr4:16319209-16319228 MsG0480019217.01.T01:intron 25.0%
! TATTATCTACTTTCTACTCA+AGG - Chr4:16318889-16318908 None:intergenic 25.0%
! TTAATTGAGAACTAATCACA+AGG - Chr4:16320568-16320587 None:intergenic 25.0%
! TTGGTTAAATAATACTCACA+TGG - Chr4:16317396-16317415 None:intergenic 25.0%
! TTTAGTAGTCAAATCTTTAG+AGG + Chr4:16319284-16319303 MsG0480019217.01.T01:intron 25.0%
! TTTGTAAAATACCGATAGAT+CGG - Chr4:16319869-16319888 None:intergenic 25.0%
!! ATTTGCGAACTTTTCTTTAA+GGG - Chr4:16318180-16318199 None:intergenic 25.0%
!! CAGGTAAGAACTTTTTAATA+AGG - Chr4:16318225-16318244 None:intergenic 25.0%
!! CTTTAAGGGATAAACTTTAA+GGG - Chr4:16318166-16318185 None:intergenic 25.0%
!! TATTTGCGAACTTTTCTTTA+AGG - Chr4:16318181-16318200 None:intergenic 25.0%
!! TCTTTAAGGGATAAACTTTA+AGG - Chr4:16318167-16318186 None:intergenic 25.0%
!! TGAATGAACTTTTCTTTTCT+TGG - Chr4:16318254-16318273 None:intergenic 25.0%
!!! AAAAATGGATTTTATGACCT+TGG + Chr4:16317681-16317700 MsG0480019217.01.T01:five_prime_UTR 25.0%
!!! ATAATTCCAGTGTTTTGATT+TGG - Chr4:16320081-16320100 None:intergenic 25.0%
!!! CTGCTTGCTTTTATATAATT+AGG - Chr4:16319008-16319027 None:intergenic 25.0%
AAATAATACTCACATGGTTG+AGG - Chr4:16317390-16317409 None:intergenic 30.0%
AACCTTGAAACATGCAAAAA+TGG + Chr4:16317666-16317685 MsG0480019217.01.T01:five_prime_UTR 30.0%
AAGGGATAAAAAAAGCTGTA+CGG - Chr4:16318148-16318167 None:intergenic 30.0%
AAGGTATGTGATATATGTGA+AGG + Chr4:16317958-16317977 MsG0480019217.01.T01:five_prime_UTR 30.0%
ACAGAGAATGTAACATCTAT+GGG + Chr4:16319944-16319963 MsG0480019217.01.T01:CDS 30.0%
ACTATATATGCGGTTCATTA+AGG - Chr4:16319379-16319398 None:intergenic 30.0%
AGGTTCATCTACTTCAAATA+GGG + Chr4:16320308-16320327 MsG0480019217.01.T01:CDS 30.0%
ATGATGAGAAACTTAGAGAA+GGG - Chr4:16317223-16317242 None:intergenic 30.0%
ATTGGTAAAACCATAATCAC+TGG + Chr4:16318043-16318062 MsG0480019217.01.T01:CDS 30.0%
CACATAGGAAACTATATATG+CGG - Chr4:16319389-16319408 None:intergenic 30.0%
CTTATGAATGATAGGTAAAC+GGG + Chr4:16318479-16318498 MsG0480019217.01.T01:intron 30.0%
CTTTAGATTTGTGTGGTATA+TGG + Chr4:16318832-16318851 MsG0480019217.01.T01:intron 30.0%
GAAAGTAGATAATAGACCAA+AGG + Chr4:16318895-16318914 MsG0480019217.01.T01:intron 30.0%
GGCTTTCTATATGTTATAGT+CGG - Chr4:16319318-16319337 None:intergenic 30.0%
TAAAGCAAAGAATGTCATGT+TGG + Chr4:16318009-16318028 MsG0480019217.01.T01:exon 30.0%
TACAGAGAATGTAACATCTA+TGG + Chr4:16319943-16319962 MsG0480019217.01.T01:CDS 30.0%
TATGATGAGAAACTTAGAGA+AGG - Chr4:16317224-16317243 None:intergenic 30.0%
TATGCTGAATATGCTAATAC+AGG + Chr4:16320282-16320301 MsG0480019217.01.T01:CDS 30.0%
TGAATTTATCAGAATCACAG+TGG + Chr4:16320475-16320494 MsG0480019217.01.T01:three_prime_UTR 30.0%
TGAGAAGCTATGTATAACAA+CGG + Chr4:16318750-16318769 MsG0480019217.01.T01:intron 30.0%
TGAGTAACCATAAACAATAG+TGG - Chr4:16317328-16317347 None:intergenic 30.0%
TGCTTAGAAAGTTAACTAGT+CGG + Chr4:16318343-16318362 MsG0480019217.01.T01:intron 30.0%
TGTTAAGGTTGCATATCTTA+TGG + Chr4:16318786-16318805 MsG0480019217.01.T01:intron 30.0%
TTATGAATGATAGGTAAACG+GGG + Chr4:16318480-16318499 MsG0480019217.01.T01:intron 30.0%
TTCATGAAAACTGTTCTTGA+TGG + Chr4:16320198-16320217 MsG0480019217.01.T01:CDS 30.0%
TTGGCTGTTCTATTGTATTT+AGG + Chr4:16320648-16320667 MsG0480019217.01.T01:three_prime_UTR 30.0%
! AATCTAGGATTGATTCTAGA+GGG - Chr4:16319349-16319368 None:intergenic 30.0%
! ACAATAGTGGAGAAAAGAAA+TGG - Chr4:16317315-16317334 None:intergenic 30.0%
! CTTTTCTCCACTATTGTTTA+TGG + Chr4:16317318-16317337 MsG0480019217.01.T01:five_prime_UTR 30.0%
! TAATCTAGGATTGATTCTAG+AGG - Chr4:16319350-16319369 None:intergenic 30.0%
! TAGTTAAAGTGTTACCACAT+AGG - Chr4:16319404-16319423 None:intergenic 30.0%
! TGCACTTTGTGTATTTTGTT+TGG - Chr4:16317605-16317624 None:intergenic 30.0%
! TTTGGATTGGAATCTACAAT+TGG + Chr4:16319610-16319629 MsG0480019217.01.T01:intron 30.0%
! TTTTACAAATGTAGCTTCGA+AGG + Chr4:16319880-16319899 MsG0480019217.01.T01:CDS 30.0%
!! ATCCATTTTTGCATGTTTCA+AGG - Chr4:16317671-16317690 None:intergenic 30.0%
!! ATTTTGTTTGGCTAAGCTTT+TGG - Chr4:16317593-16317612 None:intergenic 30.0%
!! GTATTGACTTTAGATTTGTG+TGG + Chr4:16318825-16318844 MsG0480019217.01.T01:intron 30.0%
!! GTTCTTGAATATTTTTGCCA+CGG - Chr4:16320174-16320193 None:intergenic 30.0%
!! TGGTTGATTGAAAGCATTAT+TGG - Chr4:16317415-16317434 None:intergenic 30.0%
!! TTACTAGAAGTACTTACCAA+CGG - Chr4:16318113-16318132 None:intergenic 30.0%
!!! AATGGCTTCATTTTTTCCTT+TGG + Chr4:16317269-16317288 MsG0480019217.01.T01:five_prime_UTR 30.0%
AAAGCAAAATTACCATCCCA+TGG - Chr4:16320249-16320268 None:intergenic 35.0%
AACTTAGAGAAGGGTTTATG+AGG - Chr4:16317214-16317233 None:intergenic 35.0%
AAGATATGCAACCTTAACAC+CGG - Chr4:16318785-16318804 None:intergenic 35.0%
AATTCATGGATAGGAAACAC+AGG + Chr4:16320408-16320427 MsG0480019217.01.T01:CDS 35.0%
AGGTACGATTTAACAGAACT+AGG - Chr4:16320144-16320163 None:intergenic 35.0%
AGTTCTGTTAAATCGTACCT+TGG + Chr4:16320144-16320163 MsG0480019217.01.T01:CDS 35.0%
ATAAATTCACGCGATTCCAA+AGG - Chr4:16320464-16320483 None:intergenic 35.0%
ATTGTCTTACGTTTGGCTAT+AGG + Chr4:16319241-16319260 MsG0480019217.01.T01:intron 35.0%
ATTTCATTGCCGGTAATTCA+TGG + Chr4:16320394-16320413 MsG0480019217.01.T01:CDS 35.0%
CAACAACCAAGTTACAAAGA+TGG + Chr4:16317789-16317808 MsG0480019217.01.T01:five_prime_UTR 35.0%
CACAATATGAATCCCAAACA+TGG + Chr4:16317625-16317644 MsG0480019217.01.T01:five_prime_UTR 35.0%
CACATGTATTGTCTTACGTT+TGG + Chr4:16319234-16319253 MsG0480019217.01.T01:intron 35.0%
CAGGTTCATCTACTTCAAAT+AGG + Chr4:16320307-16320326 MsG0480019217.01.T01:CDS 35.0%
CATCTTTGTAACTTGGTTGT+TGG - Chr4:16317791-16317810 None:intergenic 35.0%
CGCATATATAGTTTCCTATG+TGG + Chr4:16319387-16319406 MsG0480019217.01.T01:intron 35.0%
CTACTTCAAATAGGGTTACA+TGG + Chr4:16320316-16320335 MsG0480019217.01.T01:CDS 35.0%
GAAGAAAATACACATGCACT+TGG + Chr4:16317498-16317517 MsG0480019217.01.T01:five_prime_UTR 35.0%
GAATATGCTAATACAGGTTC+AGG + Chr4:16320288-16320307 MsG0480019217.01.T01:CDS 35.0%
GAGTATTAAAAAACCTAGCG+TGG - Chr4:16319733-16319752 None:intergenic 35.0%
GGAAATCCATCTTTGTAACT+TGG - Chr4:16317798-16317817 None:intergenic 35.0%
GGTACGATTTAACAGAACTA+GGG - Chr4:16320143-16320162 None:intergenic 35.0%
GTTTCCTATCCATGAATTAC+CGG - Chr4:16320406-16320425 None:intergenic 35.0%
TACATAGCTTCTCATTCTAG+AGG - Chr4:16318744-16318763 None:intergenic 35.0%
TATGTGATATATGTGAAGGC+TGG + Chr4:16317962-16317981 MsG0480019217.01.T01:five_prime_UTR 35.0%
TATTAAAGTGGGTCCTACAT+TGG - Chr4:16319468-16319487 None:intergenic 35.0%
TCAAATAGGGTTACATGGAA+AGG + Chr4:16320321-16320340 MsG0480019217.01.T01:CDS 35.0%
TTGAAGAAGTTTCTATCACC+AGG - Chr4:16317834-16317853 None:intergenic 35.0%
TTGGCTACACCATGATTTAA+TGG - Chr4:16317358-16317377 None:intergenic 35.0%
TTGTAACTTGGTTGTTGGTA+AGG - Chr4:16317786-16317805 None:intergenic 35.0%
! ACAAAGATGGATTTCCAACA+TGG + Chr4:16317802-16317821 MsG0480019217.01.T01:five_prime_UTR 35.0%
! ACAATTTTGCAAAACTACCG+CGG - Chr4:16319995-16320014 None:intergenic 35.0%
! ACTTTTGCTACCAGTGATTA+TGG - Chr4:16318056-16318075 None:intergenic 35.0%
! ATGGGATGGTAATTTTGCTT+TGG + Chr4:16320248-16320267 MsG0480019217.01.T01:CDS 35.0%
! CAAAGATGGATTTCCAACAT+GGG + Chr4:16317803-16317822 MsG0480019217.01.T01:five_prime_UTR 35.0%
! TTTCTTTTCTTGGTCAAGAC+AGG - Chr4:16318244-16318263 None:intergenic 35.0%
!! AGTTTCACTTGAACTTGCTA+TGG + Chr4:16317458-16317477 MsG0480019217.01.T01:five_prime_UTR 35.0%
!!! TCCAGTGTTTTGATTTGGAT+CGG - Chr4:16320076-16320095 None:intergenic 35.0%
!!! TGTTTTTGGGCTCAATTATG+TGG - Chr4:16319101-16319120 None:intergenic 35.0%
AAGCTGTACTAAGCCATGTT+TGG - Chr4:16317641-16317660 None:intergenic 40.0%
ACCGATCCAAATCAAAACAC+TGG + Chr4:16320072-16320091 MsG0480019217.01.T01:CDS 40.0%
ACTCACATGGTTGAGGATAA+GGG - Chr4:16317383-16317402 None:intergenic 40.0%
ACTTCTTCAAACTTCTTCCG+CGG + Chr4:16317844-16317863 MsG0480019217.01.T01:five_prime_UTR 40.0%
AGCAAAGAATGTCATGTTGG+TGG + Chr4:16318012-16318031 MsG0480019217.01.T01:exon 40.0%
AGCTGTACTAAGCCATGTTT+GGG - Chr4:16317640-16317659 None:intergenic 40.0%
AGGGTTTAAATCCGATTGAG+CGG - Chr4:16320124-16320143 None:intergenic 40.0%
ATCACATTCAGAAACACTGC+TGG + Chr4:16319805-16319824 MsG0480019217.01.T01:CDS 40.0%
ATGAAATTCCCAACGGTGAA+AGG - Chr4:16320381-16320400 None:intergenic 40.0%
ATTGCCGGTAATTCATGGAT+AGG + Chr4:16320399-16320418 MsG0480019217.01.T01:CDS 40.0%
CACAATTCCACATCCAATGT+AGG + Chr4:16319452-16319471 MsG0480019217.01.T01:intron 40.0%
GCAAAGAATGTCATGTTGGT+GGG + Chr4:16318013-16318032 MsG0480019217.01.T01:exon 40.0%
GCTATGGAGAGAGCAAAAAA+AGG + Chr4:16317474-16317493 MsG0480019217.01.T01:five_prime_UTR 40.0%
TAACACCTTGTCACTCAACA+AGG + Chr4:16317758-16317777 MsG0480019217.01.T01:five_prime_UTR 40.0%
TACTCACATGGTTGAGGATA+AGG - Chr4:16317384-16317403 None:intergenic 40.0%
! ACACGTCATGCATTTTGGAT+TGG + Chr4:16319597-16319616 MsG0480019217.01.T01:intron 40.0%
! AGACATAGTTTGTGACACCA+AGG - Chr4:16317701-16317720 None:intergenic 40.0%
! AGTACACACGTCATGCATTT+TGG + Chr4:16319592-16319611 MsG0480019217.01.T01:intron 40.0%
! ATCACTGGTAGCAAAAGTGT+TGG + Chr4:16318058-16318077 MsG0480019217.01.T01:CDS 40.0%
! GAGAAGGGTTTATGAGGTTT+TGG - Chr4:16317208-16317227 None:intergenic 40.0%
! GGGACAGTTGATTTCATCTT+TGG + Chr4:16319964-16319983 MsG0480019217.01.T01:CDS 40.0%
! GTAACTGTGATGGTTTTTGC+AGG - Chr4:16320039-16320058 None:intergenic 40.0%
! GTGAAGCACTAGTAAGAACA+TGG - Chr4:16320350-16320369 None:intergenic 40.0%
! TGATTCTAGAGGGAAAGATG+TGG - Chr4:16319339-16319358 None:intergenic 40.0%
! TTTCCAACATGGGTTAAACC+TGG + Chr4:16317813-16317832 MsG0480019217.01.T01:five_prime_UTR 40.0%
!! GTTTTATTAACCCTGCTGGT+TGG + Chr4:16320220-16320239 MsG0480019217.01.T01:CDS 40.0%
!!! GATGGTTTTATTAACCCTGC+TGG + Chr4:16320216-16320235 MsG0480019217.01.T01:CDS 40.0%
!!! TCTTTTTTTGCAGCTGCTAC+TGG + Chr4:16319760-16319779 MsG0480019217.01.T01:intron 40.0%
AAATACCGATAGATCGGAGC+CGG - Chr4:16319863-16319882 None:intergenic 45.0%
AAGCTTCACCTTTCACCGTT+GGG + Chr4:16320370-16320389 MsG0480019217.01.T01:CDS 45.0%
AAGGAACGCTTAAAGTCCAG+AGG - Chr4:16320445-16320464 None:intergenic 45.0%
AATGTCGTCGTTGCTAAGGA+TGG + Chr4:16317878-16317897 MsG0480019217.01.T01:five_prime_UTR 45.0%
ACATACCTTCCACTACCACT+TGG - Chr4:16317947-16317966 None:intergenic 45.0%
ACCGGCAATGAAATTCCCAA+CGG - Chr4:16320388-16320407 None:intergenic 45.0%
ACCGTTGGGAATTTCATTGC+CGG + Chr4:16320384-16320403 MsG0480019217.01.T01:CDS 45.0%
ACTTACCAACGGTTGCTGAA+CGG - Chr4:16318102-16318121 None:intergenic 45.0%
AGGAACCTTGTTGAGTGACA+AGG - Chr4:16317766-16317785 None:intergenic 45.0%
ATGGTTGAGGATAAGGGGTT+TGG - Chr4:16317377-16317396 None:intergenic 45.0%
CAAGCTGTTGCATTTCGTTC+CGG + Chr4:16319841-16319860 MsG0480019217.01.T01:CDS 45.0%
CCCACAAGAAAAAGCTGCTT+GGG + Chr4:16317536-16317555 MsG0480019217.01.T01:five_prime_UTR 45.0%
CTCACATGGTTGAGGATAAG+GGG - Chr4:16317382-16317401 None:intergenic 45.0%
CTGGACTTTAAGCGTTCCTT+TGG + Chr4:16320445-16320464 MsG0480019217.01.T01:exon 45.0%
GCTTAAAGTCCAGAGGTGAA+TGG - Chr4:16320438-16320457 None:intergenic 45.0%
TCACCAGGTTTAACCCATGT+TGG - Chr4:16317819-16317838 None:intergenic 45.0%
! AATGTCATGTTGGTGGGTGA+TGG + Chr4:16318019-16318038 MsG0480019217.01.T01:exon 45.0%
! ACTGTGATGGTTTTTGCAGG+CGG - Chr4:16320036-16320055 None:intergenic 45.0%
! ATGTTGGTGGGTGATGGTAT+TGG + Chr4:16318025-16318044 MsG0480019217.01.T01:CDS 45.0%
! ATTTTTGCCACGGTCTACCA+AGG - Chr4:16320164-16320183 None:intergenic 45.0%
! TTTCATCTTTGGAAACGCCG+CGG + Chr4:16319975-16319994 MsG0480019217.01.T01:CDS 45.0%
!! ACTGGTAGCAAAAGTGTTGG+AGG + Chr4:16318061-16318080 MsG0480019217.01.T01:CDS 45.0%
!! CAGCTTTTTCTTGTGGGCTA+CGG - Chr4:16317533-16317552 None:intergenic 45.0%
!! CCCAAGCAGCTTTTTCTTGT+GGG - Chr4:16317539-16317558 None:intergenic 45.0%
!! TTCTAGGGTTTCCGCTCAAT+CGG + Chr4:16320110-16320129 MsG0480019217.01.T01:CDS 45.0%
AATCGTACCTTGGTAGACCG+TGG + Chr4:16320154-16320173 MsG0480019217.01.T01:CDS 50.0%
AATTGCTTGTGCTCCACGCT+AGG + Chr4:16319717-16319736 MsG0480019217.01.T01:intron 50.0%
ACATTCCGTTCAGCAACCGT+TGG + Chr4:16318094-16318113 MsG0480019217.01.T01:CDS 50.0%
AGTGGGTCCTACATTGGATG+TGG - Chr4:16319462-16319481 None:intergenic 50.0%
ATAACAACGGTCCTTCTCGC+CGG + Chr4:16318763-16318782 MsG0480019217.01.T01:intron 50.0%
CAAGCTTCACCTTTCACCGT+TGG + Chr4:16320369-16320388 MsG0480019217.01.T01:CDS 50.0%
CGTCGTTGCTAAGGATGGTT+CGG + Chr4:16317883-16317902 MsG0480019217.01.T01:five_prime_UTR 50.0%
GCCCACAAGAAAAAGCTGCT+TGG + Chr4:16317535-16317554 MsG0480019217.01.T01:five_prime_UTR 50.0%
GGCTAATGTCGTCGTTGCTA+AGG + Chr4:16317874-16317893 MsG0480019217.01.T01:five_prime_UTR 50.0%
GGTTGCTGAACGGAATGTAG+TGG - Chr4:16318092-16318111 None:intergenic 50.0%
GTCGTTGCTAAGGATGGTTC+GGG + Chr4:16317884-16317903 MsG0480019217.01.T01:five_prime_UTR 50.0%
TTTGCAGCTGCTACTGGTGA+TGG + Chr4:16319766-16319785 MsG0480019217.01.T01:intron 50.0%
! CTGTGATGGTTTTTGCAGGC+GGG - Chr4:16320035-16320054 None:intergenic 50.0%
!! GCCCAAGCAGCTTTTTCTTG+TGG - Chr4:16317540-16317559 None:intergenic 50.0%
!! GGTAGCAAAAGTGTTGGAGG+TGG + Chr4:16318064-16318083 MsG0480019217.01.T01:CDS 50.0%
AACTTCTTCCGCGGCTTCGA+AGG + Chr4:16317853-16317872 MsG0480019217.01.T01:five_prime_UTR 55.0%
ACCATCACAGTTACCGCGCA+AGG + Chr4:16320045-16320064 MsG0480019217.01.T01:CDS 55.0%
CAACCTTAACACCGGCGAGA+AGG - Chr4:16318777-16318796 None:intergenic 55.0%
CCCATGGTAACCAACCAGCA+GGG - Chr4:16320233-16320252 None:intergenic 55.0%
GATGCTGCACCAAGTGGTAG+TGG + Chr4:16317935-16317954 MsG0480019217.01.T01:five_prime_UTR 55.0%
TCCCATGGTAACCAACCAGC+AGG - Chr4:16320234-16320253 None:intergenic 55.0%
TCCTTGCGCGGTAACTGTGA+TGG - Chr4:16320049-16320068 None:intergenic 55.0%
TCGTTCCGGCTCCGATCTAT+CGG + Chr4:16319855-16319874 MsG0480019217.01.T01:CDS 55.0%
! ACCCTGCTGGTTGGTTACCA+TGG + Chr4:16320229-16320248 MsG0480019217.01.T01:CDS 55.0%
! CCCTGCTGGTTGGTTACCAT+GGG + Chr4:16320230-16320249 MsG0480019217.01.T01:CDS 55.0%
! CTTGTGGGCTACGGCACTTA+GGG - Chr4:16317524-16317543 None:intergenic 55.0%
! GCTGGTTGGTTACCATGGGA+TGG + Chr4:16320234-16320253 MsG0480019217.01.T01:CDS 55.0%
! TCTTGTGGGCTACGGCACTT+AGG - Chr4:16317525-16317544 None:intergenic 55.0%
! TGGATCGGTTCTTCCTTGCG+CGG - Chr4:16320061-16320080 None:intergenic 55.0%
! TGGTTCGGGCAAGTACACGA+CGG + Chr4:16317898-16317917 MsG0480019217.01.T01:five_prime_UTR 55.0%
!! CTGCACCAAGTGGTAGTGGA+AGG + Chr4:16317939-16317958 MsG0480019217.01.T01:five_prime_UTR 55.0%
!! GACATTAGCCTTCGAAGCCG+CGG - Chr4:16317864-16317883 None:intergenic 55.0%
GGGCAAGTACACGACGGTGA+AGG + Chr4:16317904-16317923 MsG0480019217.01.T01:five_prime_UTR 60.0%
! ACAGGCGTGCCATTCACCTC+TGG + Chr4:16320426-16320445 MsG0480019217.01.T01:CDS 60.0%
! GGTCCTTCTCGCCGGTGTTA+AGG + Chr4:16318771-16318790 MsG0480019217.01.T01:intron 60.0%
!! ACTTGGTGCAGCATCCGTCG+CGG - Chr4:16317930-16317949 None:intergenic 60.0%
GCGACGGATGCTGCACCAAG+TGG + Chr4:16317929-16317948 MsG0480019217.01.T01:five_prime_UTR 65.0%
CACGACGGTGAAGGCCGCGA+CGG + Chr4:16317913-16317932 MsG0480019217.01.T01:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 16317192 16320811 16317192 ID=MsG0480019217.01;Name=MsG0480019217.01
Chr4 mRNA 16317192 16320811 16317192 ID=MsG0480019217.01.T01;Parent=MsG0480019217.01;Name=MsG0480019217.01.T01;_AED=0.23;_eAED=0.23;_QI=833|1|1|1|1|1|2|356|257
Chr4 exon 16317192 16318115 16317192 ID=MsG0480019217.01.T01:exon:4330;Parent=MsG0480019217.01.T01
Chr4 exon 16319773 16320811 16319773 ID=MsG0480019217.01.T01:exon:4331;Parent=MsG0480019217.01.T01
Chr4 five_prime_UTR 16317192 16318024 16317192 ID=MsG0480019217.01.T01:five_prime_utr;Parent=MsG0480019217.01.T01
Chr4 CDS 16318025 16318115 16318025 ID=MsG0480019217.01.T01:cds;Parent=MsG0480019217.01.T01
Chr4 CDS 16319773 16320455 16319773 ID=MsG0480019217.01.T01:cds;Parent=MsG0480019217.01.T01
Chr4 three_prime_UTR 16320456 16320811 16320456 ID=MsG0480019217.01.T01:three_prime_utr;Parent=MsG0480019217.01.T01
Gene Sequence

>MsG0480019217.01.T01

ATGTTGGTGGGTGATGGTATTGGTAAAACCATAATCACTGGTAGCAAAAGTGTTGGAGGTGGCACCACTACATTCCGTTCAGCAACCGTTGCTGCTACTGGTGATGGATTTATTGCTCAAGACATCACATTCAGAAACACTGCTGGAGCTGCAAATCATCAAGCTGTTGCATTTCGTTCCGGCTCCGATCTATCGGTATTTTACAAATGTAGCTTCGAAGGTTATCAAGACACACTTTATGTTCACTCAGAGAGACAATTTTACAGAGAATGTAACATCTATGGGACAGTTGATTTCATCTTTGGAAACGCCGCGGTAGTTTTGCAAAATTGTAACATTTTTGCAAGAAACCCGCCTGCAAAAACCATCACAGTTACCGCGCAAGGAAGAACCGATCCAAATCAAAACACTGGAATTATAATTCATAATTCTAGGGTTTCCGCTCAATCGGATTTAAACCCTAGTTCTGTTAAATCGTACCTTGGTAGACCGTGGCAAAAATATTCAAGAACAGTTTTCATGAAAACTGTTCTTGATGGTTTTATTAACCCTGCTGGTTGGTTACCATGGGATGGTAATTTTGCTTTGGATACTTTATATTATGCTGAATATGCTAATACAGGTTCAGGTTCATCTACTTCAAATAGGGTTACATGGAAAGGTTACCATGTTCTTACTAGTGCTTCACAAGCTTCACCTTTCACCGTTGGGAATTTCATTGCCGGTAATTCATGGATAGGAAACACAGGCGTGCCATTCACCTCTGGACTTTAA

Protein sequence

>MsG0480019217.01.T01

MLVGDGIGKTIITGSKSVGGGTTTFRSATVAATGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQNCNIFARNPPAKTITVTAQGRTDPNQNTGIIIHNSRVSAQSDLNPSSVKSYLGRPWQKYSRTVFMKTVLDGFINPAGWLPWDGNFALDTLYYAEYANTGSGSSTSNRVTWKGYHVLTSASQASPFTVGNFIAGNSWIGNTGVPFTSGL*