Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024858.01.T01 | XP_003611823.1 | 81.696 | 224 | 41 | 0 | 1 | 224 | 1 | 224 | 6.90E-129 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024858.01.T01 | O64837 | 32.821 | 195 | 130 | 1 | 30 | 224 | 13 | 206 | 4.16E-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024858.01.T01 | G7K9D8 | 81.696 | 224 | 41 | 0 | 1 | 224 | 1 | 224 | 3.30e-129 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580024858.01 | MsG0780041065.01 | 0.804759 | 1.851528e-49 | 9.626366e-47 |
| MsG0580024858.01 | MsG0880046790.01 | 0.810353 | 1.202507e-50 | 7.232186e-48 |
| MsG0580024858.01 | MsG0880047472.01 | 0.803164 | 3.972173e-49 | 1.982142e-46 |
| MsG0280007815.01 | MsG0580024858.01 | 0.813913 | 2.011480e-51 | 1.330589e-48 |
| MsG0280010233.01 | MsG0580024858.01 | 0.811358 | 7.286773e-51 | 4.500789e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024858.01.T01 | MTR_5g018250 | 81.696 | 224 | 41 | 0 | 1 | 224 | 1 | 224 | 8.36e-133 | 373 |
| MsG0580024858.01.T01 | MTR_5g018110 | 62.944 | 197 | 39 | 4 | 8 | 173 | 288 | 481 | 5.02e-75 | 234 |
| MsG0580024858.01.T01 | MTR_5g018190 | 74.675 | 154 | 33 | 2 | 37 | 187 | 284 | 434 | 6.10e-73 | 228 |
| MsG0580024858.01.T01 | MTR_5g018080 | 77.305 | 141 | 26 | 2 | 36 | 173 | 18 | 155 | 1.86e-70 | 213 |
| MsG0580024858.01.T01 | MTR_8g099060 | 32.632 | 190 | 128 | 0 | 29 | 218 | 70 | 259 | 1.07e-26 | 103 |
| MsG0580024858.01.T01 | MTR_8g028450 | 32.609 | 184 | 124 | 0 | 29 | 212 | 74 | 257 | 3.67e-22 | 91.7 |
| MsG0580024858.01.T01 | MTR_1g099500 | 30.811 | 185 | 128 | 0 | 24 | 208 | 58 | 242 | 6.11e-22 | 90.9 |
| MsG0580024858.01.T01 | MTR_3g449880 | 30.058 | 173 | 121 | 0 | 30 | 202 | 34 | 206 | 2.24e-19 | 83.2 |
| MsG0580024858.01.T01 | MTR_3g449880 | 29.480 | 173 | 122 | 0 | 29 | 201 | 55 | 227 | 2.77e-19 | 83.6 |
| MsG0580024858.01.T01 | MTR_1g107445 | 29.064 | 203 | 135 | 2 | 24 | 224 | 9 | 204 | 3.08e-19 | 82.8 |
| MsG0580024858.01.T01 | MTR_5g090340 | 29.167 | 192 | 124 | 3 | 24 | 208 | 94 | 280 | 2.00e-16 | 76.6 |
| MsG0580024858.01.T01 | MTR_5g090340 | 29.167 | 192 | 124 | 3 | 24 | 208 | 97 | 283 | 2.17e-16 | 76.6 |
| MsG0580024858.01.T01 | MTR_6g012460 | 25.532 | 188 | 137 | 1 | 33 | 220 | 13 | 197 | 3.77e-16 | 74.3 |
| MsG0580024858.01.T01 | MTR_4g014700 | 29.949 | 197 | 122 | 4 | 29 | 217 | 19 | 207 | 5.98e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024858.01.T01 | AT2G23640 | 32.821 | 195 | 130 | 1 | 30 | 224 | 13 | 206 | 4.24e-32 | 116 |
| MsG0580024858.01.T01 | AT5G41600 | 29.293 | 198 | 140 | 0 | 24 | 221 | 59 | 256 | 6.05e-25 | 99.0 |
| MsG0580024858.01.T01 | AT1G64090 | 32.039 | 206 | 134 | 2 | 10 | 212 | 57 | 259 | 2.34e-24 | 97.8 |
| MsG0580024858.01.T01 | AT1G64090 | 33.155 | 187 | 119 | 2 | 29 | 212 | 60 | 243 | 7.01e-24 | 96.3 |
| MsG0580024858.01.T01 | AT3G61560 | 30.270 | 185 | 129 | 0 | 24 | 208 | 59 | 243 | 8.49e-24 | 95.9 |
| MsG0580024858.01.T01 | AT3G61560 | 30.270 | 185 | 129 | 0 | 24 | 208 | 59 | 243 | 8.49e-24 | 95.9 |
| MsG0580024858.01.T01 | AT4G23630 | 29.474 | 190 | 134 | 0 | 29 | 218 | 85 | 274 | 4.66e-23 | 94.4 |
| MsG0580024858.01.T01 | AT4G23630 | 29.474 | 190 | 134 | 0 | 29 | 218 | 85 | 274 | 4.66e-23 | 94.4 |
| MsG0580024858.01.T01 | AT2G46170 | 31.111 | 180 | 124 | 0 | 29 | 208 | 64 | 243 | 8.84e-23 | 93.2 |
| MsG0580024858.01.T01 | AT3G10260 | 27.473 | 182 | 132 | 0 | 29 | 210 | 57 | 238 | 6.51e-22 | 90.9 |
| MsG0580024858.01.T01 | AT3G10260 | 27.473 | 182 | 132 | 0 | 29 | 210 | 57 | 238 | 6.51e-22 | 90.9 |
| MsG0580024858.01.T01 | AT4G11220 | 29.897 | 194 | 128 | 3 | 29 | 218 | 81 | 270 | 9.23e-22 | 90.9 |
| MsG0580024858.01.T01 | AT3G10260 | 27.473 | 182 | 132 | 0 | 29 | 210 | 77 | 258 | 1.15e-21 | 90.5 |
| MsG0580024858.01.T01 | AT3G10915 | 27.273 | 187 | 134 | 2 | 24 | 209 | 57 | 242 | 1.11e-20 | 87.4 |
| MsG0580024858.01.T01 | AT3G10915 | 27.222 | 180 | 129 | 2 | 31 | 209 | 6 | 184 | 1.62e-20 | 85.9 |
| MsG0580024858.01.T01 | AT3G10915 | 27.273 | 187 | 134 | 2 | 24 | 209 | 32 | 217 | 2.02e-20 | 86.3 |
| MsG0580024858.01.T01 | AT3G10915 | 28.108 | 185 | 130 | 3 | 27 | 209 | 2 | 185 | 2.58e-20 | 85.5 |
| MsG0580024858.01.T01 | AT3G18260 | 26.214 | 206 | 147 | 1 | 17 | 217 | 18 | 223 | 3.90e-19 | 82.8 |
| MsG0580024858.01.T01 | AT3G10915 | 27.128 | 188 | 134 | 3 | 24 | 209 | 32 | 218 | 9.16e-19 | 82.0 |
| MsG0580024858.01.T01 | AT3G10915 | 27.222 | 180 | 128 | 3 | 32 | 209 | 62 | 240 | 8.88e-18 | 79.7 |
| MsG0580024858.01.T01 | AT3G19460 | 29.747 | 158 | 111 | 0 | 25 | 182 | 14 | 171 | 1.39e-16 | 75.5 |
| MsG0580024858.01.T01 | AT3G19460 | 29.747 | 158 | 111 | 0 | 25 | 182 | 14 | 171 | 1.39e-16 | 75.5 |
| MsG0580024858.01.T01 | AT3G19460 | 29.747 | 158 | 111 | 0 | 25 | 182 | 14 | 171 | 1.39e-16 | 75.5 |
| MsG0580024858.01.T01 | AT3G61560 | 29.286 | 140 | 99 | 0 | 24 | 163 | 59 | 198 | 1.02e-13 | 67.8 |
| MsG0580024858.01.T01 | AT3G54120 | 25.140 | 179 | 134 | 0 | 19 | 197 | 10 | 188 | 2.47e-13 | 66.6 |
| MsG0580024858.01.T01 | AT2G15280 | 23.000 | 200 | 148 | 2 | 24 | 220 | 5 | 201 | 3.34e-13 | 66.2 |
| MsG0580024858.01.T01 | AT3G19460 | 27.979 | 193 | 103 | 4 | 25 | 182 | 14 | 205 | 1.10e-12 | 65.5 |
| MsG0580024858.01.T01 | AT3G19460 | 27.979 | 193 | 103 | 4 | 25 | 182 | 14 | 205 | 1.10e-12 | 65.5 |
| MsG0580024858.01.T01 | AT3G19460 | 28.108 | 185 | 97 | 4 | 33 | 182 | 6 | 189 | 1.47e-11 | 62.0 |
| MsG0580024858.01.T01 | AT3G19460 | 28.108 | 185 | 97 | 4 | 33 | 182 | 6 | 189 | 1.47e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTATAGGTATATTAAC+TGG | 0.322769 | 5:-10890875 | MsG0580024858.01.T01:intron |
| AACAACAACATGGGTGTTAA+AGG | 0.346323 | 5:-10891734 | MsG0580024858.01.T01:CDS |
| TACCTATATAAATGAATGTT+AGG | 0.353069 | 5:+10890982 | None:intergenic |
| GCCTTTGTTTGTGGGAGTTA+TGG | 0.363326 | 5:-10891048 | MsG0580024858.01.T01:CDS |
| ATCAATAAGGTGGTTGTTCA+TGG | 0.368249 | 5:-10891090 | MsG0580024858.01.T01:CDS |
| CTCCACAAAATTATTGCCAT+TGG | 0.375487 | 5:+10891837 | None:intergenic |
| TTCCTAACATTCATTTATAT+AGG | 0.389068 | 5:-10890984 | MsG0580024858.01.T01:intron |
| TTCCAGCCTCAATAAGTTTG+TGG | 0.428814 | 5:+10891169 | None:intergenic |
| CCGAAAAGTGTAAGCCGTAT+TGG | 0.431594 | 5:+10891637 | None:intergenic |
| GAAGATTGGCCTTTGTTTGT+GGG | 0.432578 | 5:-10891056 | MsG0580024858.01.T01:CDS |
| AATATTCCTCTATTCCAATA+CGG | 0.436222 | 5:-10891651 | MsG0580024858.01.T01:CDS |
| GGGAGTTATGGCTAGGTTGT+TGG | 0.439876 | 5:-10891036 | MsG0580024858.01.T01:CDS |
| ACTAAATAATGAGAAGGAAA+AGG | 0.464585 | 5:-10890720 | MsG0580024858.01.T01:CDS |
| GGAAGATTGGCCTTTGTTTG+TGG | 0.467566 | 5:-10891057 | MsG0580024858.01.T01:CDS |
| TTATGAGATTATAGATGAAA+AGG | 0.468139 | 5:-10890768 | MsG0580024858.01.T01:CDS |
| ACTTCCTCACTCTTATCTCA+TGG | 0.469314 | 5:-10891696 | MsG0580024858.01.T01:CDS |
| TGTAAGCCGTATTGGAATAG+AGG | 0.475870 | 5:+10891645 | None:intergenic |
| GTTGTTCATGGTAAGCATAA+AGG | 0.482394 | 5:-10891078 | MsG0580024858.01.T01:CDS |
| AGGGAACCACAAACTTATTG+AGG | 0.495169 | 5:-10891175 | MsG0580024858.01.T01:CDS |
| AACCACAAACTTATTGAGGC+TGG | 0.498781 | 5:-10891171 | MsG0580024858.01.T01:CDS |
| TGGTAAGCATAAAGGAAGAT+TGG | 0.502868 | 5:-10891070 | MsG0580024858.01.T01:CDS |
| GAATGAGAGGGAGTTGTGAA+AGG | 0.505354 | 5:+10891859 | None:intergenic |
| TAATGAAGGACATAGTACTA+TGG | 0.506809 | 5:-10891795 | MsG0580024858.01.T01:CDS |
| AGAAGAAACAGCTGTGAGAA+TGG | 0.511563 | 5:-10891141 | MsG0580024858.01.T01:CDS |
| AGAGATGCATGGAGTGGCTG+AGG | 0.519179 | 5:-10890808 | MsG0580024858.01.T01:CDS |
| GCTGTTGTTTCGGTAGACAT+TGG | 0.533735 | 5:+10891892 | None:intergenic |
| ATTATTGCCATTGGAATGAG+AGG | 0.537549 | 5:+10891846 | None:intergenic |
| CTCTTACGTAGGAACTTGCA+TGG | 0.539031 | 5:-10891009 | MsG0580024858.01.T01:CDS |
| TTGTTGGTAATCTCTTACGT+AGG | 0.563225 | 5:-10891020 | MsG0580024858.01.T01:CDS |
| ACAACTCCCTCTCATTCCAA+TGG | 0.568739 | 5:-10891853 | MsG0580024858.01.T01:CDS |
| TGTTTGTGGGAGTTATGGCT+AGG | 0.572092 | 5:-10891043 | MsG0580024858.01.T01:CDS |
| TAATTGCGGCAACAACAACA+TGG | 0.572571 | 5:-10891744 | MsG0580024858.01.T01:CDS |
| TAGAATACTAAATAATGAGA+AGG | 0.575654 | 5:-10890726 | MsG0580024858.01.T01:CDS |
| TGGCAAAGACAGTTCGAGCA+TGG | 0.575869 | 5:-10891121 | MsG0580024858.01.T01:CDS |
| TAGTGGCAATGACATAATGA+AGG | 0.580923 | 5:-10891809 | MsG0580024858.01.T01:CDS |
| GCCATAACTCCCACAAACAA+AGG | 0.591002 | 5:+10891047 | None:intergenic |
| GGACAAGATCAAGAGATGCA+TGG | 0.610589 | 5:-10890819 | MsG0580024858.01.T01:CDS |
| AGGACATAGTACTATGGAGG+AGG | 0.612451 | 5:-10891789 | MsG0580024858.01.T01:CDS |
| GAGATGCATGGAGTGGCTGA+GGG | 0.617818 | 5:-10890807 | MsG0580024858.01.T01:CDS |
| AAGTACAAGTATTCTAATTG+CGG | 0.618248 | 5:-10891758 | MsG0580024858.01.T01:CDS |
| TGAAGGACATAGTACTATGG+AGG | 0.648560 | 5:-10891792 | MsG0580024858.01.T01:CDS |
| AGATCAAGAGATGCATGGAG+TGG | 0.668982 | 5:-10890814 | MsG0580024858.01.T01:CDS |
| TGAGCCATGAGATAAGAGTG+AGG | 0.673885 | 5:+10891692 | None:intergenic |
| TTATTGCCATTGGAATGAGA+GGG | 0.685197 | 5:+10891847 | None:intergenic |
| AATTGCGGCAACAACAACAT+GGG | 0.688369 | 5:-10891743 | MsG0580024858.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAACAATTAAAATAAA+TGG | + | Chr5:10891394-10891413 | None:intergenic | 10.0% |
| !!! | ATTTTAATTGTTTGAAATTT+AGG | - | Chr5:10891397-10891416 | MsG0580024858.01.T01:intron | 10.0% |
| !!! | TTTTAATTGTTTGAAATTTA+GGG | - | Chr5:10891398-10891417 | MsG0580024858.01.T01:intron | 10.0% |
| !!! | TTAATTTTGTTTTATGGTAT+AGG | - | Chr5:10891705-10891724 | MsG0580024858.01.T01:CDS | 15.0% |
| !! | ATGGGAAATTTAATAGAAAT+TGG | - | Chr5:10891125-10891144 | MsG0580024858.01.T01:CDS | 20.0% |
| !! | TACCTATATAAATGAATGTT+AGG | + | Chr5:10891613-10891632 | None:intergenic | 20.0% |
| !! | TAGAATACTAAATAATGAGA+AGG | - | Chr5:10891866-10891885 | MsG0580024858.01.T01:CDS | 20.0% |
| !! | TATAAATAAGAGAAAAACCA+AGG | - | Chr5:10891153-10891172 | MsG0580024858.01.T01:CDS | 20.0% |
| !! | TATAACTTATATGAAAAACG+AGG | - | Chr5:10891752-10891771 | MsG0580024858.01.T01:CDS | 20.0% |
| !! | TTAATACAATCAATTCAAGA+GGG | + | Chr5:10891682-10891701 | None:intergenic | 20.0% |
| !! | TTATGAGATTATAGATGAAA+AGG | - | Chr5:10891824-10891843 | MsG0580024858.01.T01:CDS | 20.0% |
| !! | TTCCTAACATTCATTTATAT+AGG | - | Chr5:10891608-10891627 | MsG0580024858.01.T01:intron | 20.0% |
| !! | TTTAATACAATCAATTCAAG+AGG | + | Chr5:10891683-10891702 | None:intergenic | 20.0% |
| !!! | GGTTTTTCTCTTATTTATAA+GGG | + | Chr5:10891152-10891171 | None:intergenic | 20.0% |
| !!! | TCGTTTTTCATATAAGTTAT+AGG | + | Chr5:10891753-10891772 | None:intergenic | 20.0% |
| !!! | TGGTTTTTCTCTTATTTATA+AGG | + | Chr5:10891153-10891172 | None:intergenic | 20.0% |
| ! | AAGTACAAGTATTCTAATTG+CGG | - | Chr5:10890834-10890853 | MsG0580024858.01.T01:CDS | 25.0% |
| ! | AATATTCCTCTATTCCAATA+CGG | - | Chr5:10890941-10890960 | MsG0580024858.01.T01:intron | 25.0% |
| ! | ACTAAATAATGAGAAGGAAA+AGG | - | Chr5:10891872-10891891 | MsG0580024858.01.T01:CDS | 25.0% |
| ! | TAATACAATCAATTCAAGAG+GGG | + | Chr5:10891681-10891700 | None:intergenic | 25.0% |
| ! | TATGGTATAGGTATATTAAC+TGG | - | Chr5:10891717-10891736 | MsG0580024858.01.T01:CDS | 25.0% |
| !! | CATGGATTGAAAAATCAATA+AGG | - | Chr5:10891489-10891508 | MsG0580024858.01.T01:intron | 25.0% |
| !!! | ATGGTACTAAAGTTGATATA+AGG | + | Chr5:10891327-10891346 | None:intergenic | 25.0% |
| AAAAACCAAGGAAATAAGGA+AGG | - | Chr5:10891165-10891184 | MsG0580024858.01.T01:CDS | 30.0% | |
| AGAGAAAAACCAAGGAAATA+AGG | - | Chr5:10891161-10891180 | MsG0580024858.01.T01:CDS | 30.0% | |
| AGATAGTAAAATGAGAGAAG+AGG | + | Chr5:10891222-10891241 | None:intergenic | 30.0% | |
| AGATTCTAGCAACTAGATAA+TGG | + | Chr5:10891036-10891055 | None:intergenic | 30.0% | |
| ATATGCATTAGAAGAAGTAG+AGG | + | Chr5:10891002-10891021 | None:intergenic | 30.0% | |
| GGATTGAAAAATCAATAAGG+TGG | - | Chr5:10891492-10891511 | MsG0580024858.01.T01:intron | 30.0% | |
| TAATGAAGGACATAGTACTA+TGG | - | Chr5:10890797-10890816 | MsG0580024858.01.T01:CDS | 30.0% | |
| ! | ATATTCCTTCCTTATTTCCT+TGG | + | Chr5:10891173-10891192 | None:intergenic | 30.0% |
| ! | TTCCAATGGCAATAATTTTG+TGG | - | Chr5:10890753-10890772 | MsG0580024858.01.T01:CDS | 30.0% |
| !!! | TTTTGTTTCTGCTGTTGTTT+CGG | + | Chr5:10890713-10890732 | None:intergenic | 30.0% |
| AACAACAACATGGGTGTTAA+AGG | - | Chr5:10890858-10890877 | MsG0580024858.01.T01:CDS | 35.0% | |
| ATCAATAAGGTGGTTGTTCA+TGG | - | Chr5:10891502-10891521 | MsG0580024858.01.T01:intron | 35.0% | |
| ATTATTGCCATTGGAATGAG+AGG | + | Chr5:10890749-10890768 | None:intergenic | 35.0% | |
| CTCCACAAAATTATTGCCAT+TGG | + | Chr5:10890758-10890777 | None:intergenic | 35.0% | |
| GTAAAATGAGAGAAGAGGTT+AGG | + | Chr5:10891217-10891236 | None:intergenic | 35.0% | |
| GTCTGTGCTTCATAACTAAT+AGG | + | Chr5:10891061-10891080 | None:intergenic | 35.0% | |
| GTTGTTCATGGTAAGCATAA+AGG | - | Chr5:10891514-10891533 | MsG0580024858.01.T01:intron | 35.0% | |
| TAGTGGCAATGACATAATGA+AGG | - | Chr5:10890783-10890802 | MsG0580024858.01.T01:CDS | 35.0% | |
| TGACACACTATGTGCTAAAT+AGG | - | Chr5:10891358-10891377 | MsG0580024858.01.T01:intron | 35.0% | |
| TGGTAAGCATAAAGGAAGAT+TGG | - | Chr5:10891522-10891541 | MsG0580024858.01.T01:intron | 35.0% | |
| TTATTGCCATTGGAATGAGA+GGG | + | Chr5:10890748-10890767 | None:intergenic | 35.0% | |
| ! | AATTTTGTGGAGCAAGATAG+TGG | - | Chr5:10890766-10890785 | MsG0580024858.01.T01:CDS | 35.0% |
| !! | TTGTTGGTAATCTCTTACGT+AGG | - | Chr5:10891572-10891591 | MsG0580024858.01.T01:intron | 35.0% |
| AACAGCAAACAAGGGCAATA+TGG | - | Chr5:10891106-10891125 | MsG0580024858.01.T01:CDS | 40.0% | |
| AACCACAAACTTATTGAGGC+TGG | - | Chr5:10891421-10891440 | MsG0580024858.01.T01:intron | 40.0% | |
| AATTGCGGCAACAACAACAT+GGG | - | Chr5:10890849-10890868 | MsG0580024858.01.T01:CDS | 40.0% | |
| ACAGCAAACAAGGGCAATAT+GGG | - | Chr5:10891107-10891126 | MsG0580024858.01.T01:CDS | 40.0% | |
| ACTTCCTCACTCTTATCTCA+TGG | - | Chr5:10890896-10890915 | MsG0580024858.01.T01:intron | 40.0% | |
| AGAAGAAACAGCTGTGAGAA+TGG | - | Chr5:10891451-10891470 | MsG0580024858.01.T01:intron | 40.0% | |
| AGGGAACCACAAACTTATTG+AGG | - | Chr5:10891417-10891436 | MsG0580024858.01.T01:intron | 40.0% | |
| ATGAGTCACAACAGCAAACA+AGG | - | Chr5:10891097-10891116 | MsG0580024858.01.T01:CDS | 40.0% | |
| GCATTAGAAGAAGTAGAGGA+AGG | + | Chr5:10890998-10891017 | None:intergenic | 40.0% | |
| TAATTGCGGCAACAACAACA+TGG | - | Chr5:10890848-10890867 | MsG0580024858.01.T01:CDS | 40.0% | |
| TGAAGGACATAGTACTATGG+AGG | - | Chr5:10890800-10890819 | MsG0580024858.01.T01:CDS | 40.0% | |
| TGAGTCACAACAGCAAACAA+GGG | - | Chr5:10891098-10891117 | MsG0580024858.01.T01:CDS | 40.0% | |
| TGTAAGCCGTATTGGAATAG+AGG | + | Chr5:10890950-10890969 | None:intergenic | 40.0% | |
| TTCCAGCCTCAATAAGTTTG+TGG | + | Chr5:10891426-10891445 | None:intergenic | 40.0% | |
| ! | CAATACGGCTTACACTTTTC+GGG | - | Chr5:10890956-10890975 | MsG0580024858.01.T01:intron | 40.0% |
| ! | CCAATACGGCTTACACTTTT+CGG | - | Chr5:10890955-10890974 | MsG0580024858.01.T01:intron | 40.0% |
| !! | GAAGATTGGCCTTTGTTTGT+GGG | - | Chr5:10891536-10891555 | MsG0580024858.01.T01:intron | 40.0% |
| ACAACTCCCTCTCATTCCAA+TGG | - | Chr5:10890739-10890758 | MsG0580024858.01.T01:CDS | 45.0% | |
| AGATCAAGAGATGCATGGAG+TGG | - | Chr5:10891778-10891797 | MsG0580024858.01.T01:CDS | 45.0% | |
| AGGACATAGTACTATGGAGG+AGG | - | Chr5:10890803-10890822 | MsG0580024858.01.T01:CDS | 45.0% | |
| CTCTTACGTAGGAACTTGCA+TGG | - | Chr5:10891583-10891602 | MsG0580024858.01.T01:intron | 45.0% | |
| GAAGAAGTAGAGGAAGGAGA+AGG | + | Chr5:10890992-10891011 | None:intergenic | 45.0% | |
| GAATGAGAGGGAGTTGTGAA+AGG | + | Chr5:10890736-10890755 | None:intergenic | 45.0% | |
| GCCATAACTCCCACAAACAA+AGG | + | Chr5:10891548-10891567 | None:intergenic | 45.0% | |
| GGACAAGATCAAGAGATGCA+TGG | - | Chr5:10891773-10891792 | MsG0580024858.01.T01:CDS | 45.0% | |
| TGAGCCATGAGATAAGAGTG+AGG | + | Chr5:10890903-10890922 | None:intergenic | 45.0% | |
| TGTTTGTGGGAGTTATGGCT+AGG | - | Chr5:10891549-10891568 | MsG0580024858.01.T01:intron | 45.0% | |
| ! | CCGAAAAGTGTAAGCCGTAT+TGG | + | Chr5:10890958-10890977 | None:intergenic | 45.0% |
| ! | GCCTTTGTTTGTGGGAGTTA+TGG | - | Chr5:10891544-10891563 | MsG0580024858.01.T01:intron | 45.0% |
| ! | GTGTGTCAGTGTCGTTGTAA+TGG | + | Chr5:10891346-10891365 | None:intergenic | 45.0% |
| !! | GGAAGATTGGCCTTTGTTTG+TGG | - | Chr5:10891535-10891554 | MsG0580024858.01.T01:intron | 45.0% |
| !!! | TAAATTTTAATTTTGTTTTA+TGG | - | Chr5:10891699-10891718 | MsG0580024858.01.T01:CDS | 5.0% |
| GGGAGTTATGGCTAGGTTGT+TGG | - | Chr5:10891556-10891575 | MsG0580024858.01.T01:intron | 50.0% | |
| TGACTCATTCCAGTCGTGTC+TGG | + | Chr5:10891085-10891104 | None:intergenic | 50.0% | |
| TGGCAAAGACAGTTCGAGCA+TGG | - | Chr5:10891471-10891490 | MsG0580024858.01.T01:intron | 50.0% | |
| AGAGATGCATGGAGTGGCTG+AGG | - | Chr5:10891784-10891803 | MsG0580024858.01.T01:CDS | 55.0% | |
| GAGATGCATGGAGTGGCTGA+GGG | - | Chr5:10891785-10891804 | MsG0580024858.01.T01:CDS | 55.0% | |
| GCACAGACACCAGACACGAC+TGG | - | Chr5:10891073-10891092 | MsG0580024858.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 10890703 | 10891911 | 10890703 | ID=MsG0580024858.01;Name=MsG0580024858.01 |
| Chr5 | mRNA | 10890703 | 10891911 | 10890703 | ID=MsG0580024858.01.T01;Parent=MsG0580024858.01;Name=MsG0580024858.01.T01;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|3|0|224 |
| Chr5 | exon | 10891633 | 10891911 | 10891633 | ID=MsG0580024858.01.T01:exon:19789;Parent=MsG0580024858.01.T01 |
| Chr5 | exon | 10890985 | 10891195 | 10890985 | ID=MsG0580024858.01.T01:exon:19788;Parent=MsG0580024858.01.T01 |
| Chr5 | exon | 10890703 | 10890887 | 10890703 | ID=MsG0580024858.01.T01:exon:19787;Parent=MsG0580024858.01.T01 |
| Chr5 | CDS | 10891633 | 10891911 | 10891633 | ID=MsG0580024858.01.T01:cds;Parent=MsG0580024858.01.T01 |
| Chr5 | CDS | 10890985 | 10891195 | 10890985 | ID=MsG0580024858.01.T01:cds;Parent=MsG0580024858.01.T01 |
| Chr5 | CDS | 10890703 | 10890887 | 10890703 | ID=MsG0580024858.01.T01:cds;Parent=MsG0580024858.01.T01 |
| Gene Sequence |
| Protein sequence |
