AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041065.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041065.01.T01 MTR_7g103490 95.382 563 26 0 1 563 1 563 0.0 1065
MsG0780041065.01.T01 MTR_1g061540 54.265 551 221 11 1 544 1 527 0.0 522
MsG0780041065.01.T01 MTR_1g092540 37.541 610 313 12 5 560 1 596 4.60e-118 362
MsG0780041065.01.T01 MTR_3g091180 36.842 608 303 8 5 554 1 585 5.50e-113 348
MsG0780041065.01.T01 MTR_1g044135 33.919 569 296 15 24 538 38 580 4.59e-86 279
MsG0780041065.01.T01 MTR_1g073890 33.396 536 302 12 24 533 39 545 2.04e-79 261
MsG0780041065.01.T01 MTR_6g461910 33.454 553 301 14 11 555 18 511 3.53e-71 237
MsG0780041065.01.T01 MTR_4g021260 24.812 532 314 12 19 532 9 472 3.60e-42 158
MsG0780041065.01.T01 MTR_0318s0020 30.303 297 161 7 11 282 108 383 5.18e-34 136
MsG0780041065.01.T01 MTR_0318s0020 45.399 163 85 1 386 548 406 564 8.96e-34 135
MsG0780041065.01.T01 MTR_7g063040 31.280 211 138 2 29 233 25 234 5.61e-27 114
MsG0780041065.01.T01 MTR_7g063040 39.161 143 81 2 395 531 335 477 6.89e-22 99.4
MsG0780041065.01.T01 MTR_1g096970 27.907 215 137 3 29 233 51 257 3.43e-16 82.0
MsG0780041065.01.T01 MTR_1g096970 28.662 157 96 2 388 534 263 413 6.24e-13 71.6
MsG0780041065.01.T01 MTR_3g114010 24.783 230 165 3 29 253 122 348 2.48e-15 79.7
MsG0780041065.01.T01 MTR_3g114010 30.986 142 82 2 396 527 343 478 2.49e-11 67.0
MsG0780041065.01.T01 MTR_1g025340 27.230 213 142 4 26 231 124 330 4.83e-15 78.6
MsG0780041065.01.T01 MTR_3g097240 27.895 190 132 3 29 217 141 326 6.05e-14 74.3
MsG0780041065.01.T01 MTR_3g097240 27.895 190 132 3 29 217 141 326 7.80e-14 74.3
MsG0780041065.01.T01 MTR_3g097240 27.895 190 132 3 29 217 141 326 9.63e-14 74.7
MsG0780041065.01.T01 MTR_8g095080 29.651 172 93 4 29 198 150 295 4.21e-11 65.9
MsG0780041065.01.T01 MTR_8g095080 29.651 172 93 4 29 198 150 295 6.77e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041065.01.T01 AT5G04550 37.960 598 315 16 5 553 1 591 2.89e-107 334
MsG0780041065.01.T01 AT5G04550 37.960 598 315 16 5 553 1 591 2.89e-107 334
MsG0780041065.01.T01 AT3G23160 38.942 208 126 1 26 233 40 246 3.95e-41 156
MsG0780041065.01.T01 AT3G23160 46.309 149 77 2 391 538 356 502 5.83e-35 139
MsG0780041065.01.T01 AT5G51670 44.371 151 76 2 386 532 305 451 1.36e-29 122
MsG0780041065.01.T01 AT5G51670 31.696 224 127 3 29 233 37 253 8.43e-28 117
MsG0780041065.01.T01 AT5G51670 44.371 151 76 2 386 532 305 451 1.36e-29 122
MsG0780041065.01.T01 AT5G51670 31.696 224 127 3 29 233 37 253 8.43e-28 117
MsG0780041065.01.T01 AT1G34320 26.887 212 145 3 29 233 155 363 1.09e-17 87.0
MsG0780041065.01.T01 AT1G34320 30.556 144 85 2 396 530 380 517 1.80e-12 70.5
MsG0780041065.01.T01 AT1G34320 26.887 212 145 3 29 233 155 363 1.09e-17 87.0
MsG0780041065.01.T01 AT1G34320 30.556 144 85 2 396 530 380 517 1.80e-12 70.5
MsG0780041065.01.T01 AT1G30755 26.977 215 145 3 29 236 134 343 5.91e-15 77.8
MsG0780041065.01.T01 AT1G30755 26.977 215 145 3 29 236 134 343 5.91e-15 77.8
MsG0780041065.01.T01 AT1G30755 26.977 215 145 3 29 236 134 343 8.63e-15 77.8
MsG0780041065.01.T01 AT1G30755 31.973 147 81 3 396 529 355 495 9.51e-12 68.2
MsG0780041065.01.T01 AT1G30755 26.977 215 145 3 29 236 134 343 8.63e-15 77.8
MsG0780041065.01.T01 AT1G30755 31.973 147 81 3 396 529 355 495 9.51e-12 68.2
MsG0780041065.01.T01 AT1G30755 26.977 215 145 3 29 236 134 343 8.63e-15 77.8
MsG0780041065.01.T01 AT1G30755 31.973 147 81 3 396 529 355 495 9.51e-12 68.2
MsG0780041065.01.T01 AT1G30755 26.977 215 145 3 29 236 134 343 8.87e-15 77.4
MsG0780041065.01.T01 AT5G08660 31.056 161 89 4 396 542 372 524 4.11e-12 69.3
MsG0780041065.01.T01 AT5G08660 29.032 217 132 5 29 233 149 355 3.14e-11 66.6
MsG0780041065.01.T01 AT5G08660 31.056 161 89 4 396 542 372 524 4.11e-12 69.3
MsG0780041065.01.T01 AT5G08660 29.032 217 132 5 29 233 149 355 3.14e-11 66.6
MsG0780041065.01.T01 AT5G08660 31.056 161 89 4 396 542 372 524 4.11e-12 69.3
MsG0780041065.01.T01 AT5G08660 29.032 217 132 5 29 233 149 355 3.14e-11 66.6
MsG0780041065.01.T01 AT5G08660 29.032 217 132 5 29 233 149 355 2.46e-11 66.6

Find 101 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCAGTAGTTGGAATTT+TGG 0.169916 7:-86058888 MsG0780041065.01.T01:CDS
ATCATTCTCAGAAGGATAAA+TGG 0.280192 7:+86058166 None:intergenic
GATCTCAATGGATTCAATTC+AGG 0.289059 7:-86058146 MsG0780041065.01.T01:CDS
TTGTGCTTTCGACCTTTATC+TGG 0.290856 7:+86058047 None:intergenic
CTAAATTATGCCTCAGCAAT+AGG 0.311973 7:-86057821 MsG0780041065.01.T01:CDS
TCTCTCAGAATGCAAACTTA+TGG 0.326871 7:+86057512 None:intergenic
GGTCAGGGTGGGAATATAAA+TGG 0.337433 7:-86058583 MsG0780041065.01.T01:CDS
AAAATCACTATTTACTGTAT+TGG 0.338859 7:-86058312 MsG0780041065.01.T01:CDS
CAAAATTATATTCAGTGGTC+AGG 0.349364 7:-86058599 MsG0780041065.01.T01:CDS
GAGAGGATCATATTTGTGTT+TGG 0.355824 7:-86058290 MsG0780041065.01.T01:CDS
TGATTATGTTGTTCGGTTGC+TGG 0.360079 7:-86058336 MsG0780041065.01.T01:CDS
AGCAAGCAGTTAGGAAATAT+AGG 0.365556 7:-86058014 MsG0780041065.01.T01:CDS
AACTTCAACCGATGCAGTTC+AGG 0.369522 7:+86058440 None:intergenic
AGAACAATTCTTATAGTAGT+TGG 0.371153 7:+86057660 None:intergenic
GCAATGGTTGATCTTCTTGT+AGG 0.386227 7:-86057402 MsG0780041065.01.T01:CDS
GCGCAATCTGTTGCCAGGTT+TGG 0.405753 7:-86058680 MsG0780041065.01.T01:CDS
TGTGGCAGTCTTTGAATGAT+TGG 0.407812 7:-86058826 MsG0780041065.01.T01:CDS
CTGTTGCCAGGTTTGGTAAG+AGG 0.410050 7:-86058673 MsG0780041065.01.T01:CDS
AGAATATATTCTAATTCTGT+TGG 0.410063 7:+86057842 None:intergenic
GATTTGCATAATGAAGAGTT+TGG 0.419408 7:+86057442 None:intergenic
TGTTCAAACCGGTGATAAAC+CGG 0.430823 7:+86058641 None:intergenic
TGCTAGCGCAATCTGTTGCC+AGG 0.432041 7:-86058685 MsG0780041065.01.T01:CDS
TCAGCTTCATTTACTGTTGG+TGG 0.433398 7:-86057792 MsG0780041065.01.T01:CDS
CAAAAGTAGGTACCAGAGAT+AGG 0.439873 7:-86057353 MsG0780041065.01.T01:CDS
TGGTAAGAGGTGCACAGATC+CGG 0.441603 7:-86058660 MsG0780041065.01.T01:CDS
AAAGTTATGATTATGTTGTT+CGG 0.449359 7:-86058343 MsG0780041065.01.T01:CDS
GGATTCAATTCAGGTTCTGT+TGG 0.449530 7:-86058137 MsG0780041065.01.T01:CDS
GCTCTTCATCCACCAGATAA+AGG 0.449587 7:-86058059 MsG0780041065.01.T01:CDS
TGAGGATGATGATTACTTGA+TGG 0.452909 7:-86058744 MsG0780041065.01.T01:CDS
GAAGGTCGCTTGTCAGCGTC+AGG 0.458349 7:-86058402 MsG0780041065.01.T01:CDS
TGAACTCTGTTGGGATCAAA+AGG 0.458505 7:-86058775 MsG0780041065.01.T01:CDS
AGCAAATTCCAACCTATCTC+TGG 0.459744 7:+86057341 None:intergenic
CTCTTGTCAAGTGAAAAGTA+TGG 0.465311 7:+86058107 None:intergenic
GTGGCAGTCTTTGAATGATT+GGG 0.465619 7:-86058825 MsG0780041065.01.T01:CDS
CGTTCTGAAAGCAAGCAGTT+AGG 0.469725 7:-86058023 MsG0780041065.01.T01:CDS
GATTCAATTCAGGTTCTGTT+GGG 0.474157 7:-86058136 MsG0780041065.01.T01:CDS
CCTTCTGAGAATGATCTCAA+TGG 0.478962 7:-86058158 MsG0780041065.01.T01:CDS
ATGGTTCAATTCTTTGTGGC+CGG 0.479349 7:-86058936 MsG0780041065.01.T01:CDS
TTAGATAACAAAGCAGTAGT+TGG 0.479479 7:-86058896 MsG0780041065.01.T01:CDS
TCAGTTTCTTGCTGTAAAGA+TGG 0.482322 7:+86058254 None:intergenic
GAAGAGATAGTGAACTCTGT+TGG 0.482435 7:-86058785 MsG0780041065.01.T01:CDS
CATGCAAATATTAGAATGGT+TGG 0.483389 7:-86057553 MsG0780041065.01.T01:CDS
GAAATCAATGAGAGGTGAAA+TGG 0.483529 7:-86058969 None:intergenic
GCAAGCAGTTAGGAAATATA+GGG 0.487915 7:-86058013 MsG0780041065.01.T01:CDS
AAGAGATAGTGAACTCTGTT+GGG 0.492140 7:-86058784 MsG0780041065.01.T01:CDS
AATGTATTATTGCGCGAGAC+CGG 0.492515 7:+86058917 None:intergenic
GGTCATGGTTCAATTCTTTG+TGG 0.494970 7:-86058940 MsG0780041065.01.T01:CDS
TGCAAACAAAATGTTCAAAC+CGG 0.501747 7:+86058630 None:intergenic
AAGAAACAAGGAACATAAGA+AGG 0.503344 7:-86058081 MsG0780041065.01.T01:CDS
GTTGCTCGAGTTTCAGAAGA+AGG 0.509498 7:-86058420 MsG0780041065.01.T01:CDS
ATTCAGGTTCTGTTGGGAGG+AGG 0.512890 7:-86058130 MsG0780041065.01.T01:CDS
ATTGGGAGGTGTTGAATTTG+AGG 0.514831 7:-86058808 MsG0780041065.01.T01:CDS
GATTGTATTGATCGAGAAGA+TGG 0.515620 7:-86057739 MsG0780041065.01.T01:CDS
TACTCATGCAAATATTAGAA+TGG 0.516099 7:-86057557 MsG0780041065.01.T01:CDS
GATCAAAAGGTTAGTTTCTG+AGG 0.517442 7:-86058762 MsG0780041065.01.T01:CDS
AGTAGGTACCAGAGATAGGT+TGG 0.517648 7:-86057349 MsG0780041065.01.T01:CDS
TGCACACAACTCTGTATGAC+AGG 0.520353 7:+86057954 None:intergenic
ATGAGAGGTGAAATGGTGAA+TGG 0.536892 7:-86058962 MsG0780041065.01.T01:CDS
GCTAGCACTAGATCATTGAA+TGG 0.539179 7:-86057321 MsG0780041065.01.T01:CDS
GCACAGATCCGGTTTATCAC+CGG 0.539458 7:-86058649 MsG0780041065.01.T01:CDS
TGCTTTCGACCTTTATCTGG+TGG 0.542097 7:+86058050 None:intergenic
TTTCTTGCTGTAAAGATGGT+AGG 0.542724 7:+86058258 None:intergenic
TTGGGAGGTGTTGAATTTGA+GGG 0.544404 7:-86058807 MsG0780041065.01.T01:CDS
GCATAATGAAGAGTTTGGAC+TGG 0.546149 7:+86057447 None:intergenic
AAGTCAGCTTCATTTACTGT+TGG 0.558339 7:-86057795 MsG0780041065.01.T01:CDS
TGTGCACCTCTTACCAAACC+TGG 0.567301 7:+86058667 None:intergenic
TACTATAAGAATTGTTCTGA+GGG 0.567896 7:-86057655 MsG0780041065.01.T01:CDS
ACAGACATGCAACTTCTGAA+TGG 0.568805 7:+86057990 None:intergenic
CAATCATATCTGCATAGCGA+AGG 0.569306 7:+86057757 None:intergenic
GTCTTTGTATGAGAAATATG+AGG 0.570652 7:-86057299 MsG0780041065.01.T01:CDS
CAGAGTTGTGTGCAGACAGA+TGG 0.570724 7:-86057945 MsG0780041065.01.T01:CDS
AAAATTATATTCAGTGGTCA+GGG 0.571258 7:-86058598 MsG0780041065.01.T01:CDS
TCAATTCAGGTTCTGTTGGG+AGG 0.571497 7:-86058133 MsG0780041065.01.T01:CDS
TTCGCAAAATTGTGTTGTGG+AGG 0.576084 7:+86058517 None:intergenic
CTACTATAAGAATTGTTCTG+AGG 0.580271 7:-86057656 MsG0780041065.01.T01:CDS
TGAGAGGTGAAATGGTGAAT+GGG 0.582150 7:-86058961 MsG0780041065.01.T01:CDS
ATCTAAGAGACATGTCTCCA+TGG 0.593245 7:-86058370 MsG0780041065.01.T01:CDS
TGCAACATTGATACAAAAGT+AGG 0.594376 7:-86057366 MsG0780041065.01.T01:CDS
TGCAAGGTCTGCATCATGAA+CGG 0.594901 7:+86057596 None:intergenic
CTTGTCAGCGTCAGGAAGTG+AGG 0.596623 7:-86058394 MsG0780041065.01.T01:CDS
AGAGCTTGAAGTACTAGCAG+AGG 0.598702 7:-86058495 MsG0780041065.01.T01:CDS
CTTATGGTGTTGTGTGCAAG+TGG 0.602736 7:+86057528 None:intergenic
CAGTTCAAAATTATATTCAG+TGG 0.604701 7:-86058604 MsG0780041065.01.T01:CDS
CTCTTCGCAAAATTGTGTTG+TGG 0.606789 7:+86058514 None:intergenic
CACTATTTACTGTATTGGAG+AGG 0.606957 7:-86058307 MsG0780041065.01.T01:CDS
TGTTGACAAAATGAAAACAA+TGG 0.608149 7:-86057880 MsG0780041065.01.T01:CDS
CCATTGAGATCATTCTCAGA+AGG 0.610053 7:+86058158 None:intergenic
AAGCGAATCCTGAACTGCAT+CGG 0.613804 7:-86058448 MsG0780041065.01.T01:CDS
TTATATTCAGTGGTCAGGGT+GGG 0.617634 7:-86058594 MsG0780041065.01.T01:CDS
AATCATATCTGCATAGCGAA+GGG 0.622709 7:+86057758 None:intergenic
TGTGTGCAGACAGATGGTTA+TGG 0.626580 7:-86057939 MsG0780041065.01.T01:CDS
CCTTGCAGCAAAATCAAGCT+CGG 0.630460 7:-86057580 MsG0780041065.01.T01:CDS
ATTATATTCAGTGGTCAGGG+TGG 0.634628 7:-86058595 MsG0780041065.01.T01:CDS
TGACAAGAGCAAAAGAAACA+AGG 0.639779 7:-86058093 MsG0780041065.01.T01:CDS
GCAGTCTTTGAATGATTGGG+AGG 0.639881 7:-86058822 MsG0780041065.01.T01:CDS
ATGGTTATGGTGGTTCTATG+AGG 0.644787 7:-86057926 MsG0780041065.01.T01:CDS
GTGCAGACAGATGGTTATGG+TGG 0.648743 7:-86057936 MsG0780041065.01.T01:CDS
GATATAGTGAAATCAATGAG+AGG 0.656452 7:-86058977 None:intergenic
GTGAAATGGTGAATGGGTCA+TGG 0.657622 7:-86058955 MsG0780041065.01.T01:CDS
CTGACTTTAACCTATTGCTG+AGG 0.661782 7:+86057811 None:intergenic
TGTCGAAGATGACTAACTTG+TGG 0.758756 7:-86058844 MsG0780041065.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCACTATTTACTGTAT+TGG - Chr7:86057943-86057962 MsG0780041065.01.T01:CDS 20.0%
!! AAAGTTATGATTATGTTGTT+CGG - Chr7:86057912-86057931 MsG0780041065.01.T01:CDS 20.0%
!! AGAATATATTCTAATTCTGT+TGG + Chr7:86058416-86058435 None:intergenic 20.0%
!! GAAAAAAATGGAAAAATTTG+TGG - Chr7:86057715-86057734 MsG0780041065.01.T01:CDS 20.0%
!!! TAATCATAACTTTTATTCCA+TGG + Chr7:86057905-86057924 None:intergenic 20.0%
! AAAATTATATTCAGTGGTCA+GGG - Chr7:86057657-86057676 MsG0780041065.01.T01:CDS 25.0%
! AGAACAATTCTTATAGTAGT+TGG + Chr7:86058598-86058617 None:intergenic 25.0%
! CAGTTCAAAATTATATTCAG+TGG - Chr7:86057651-86057670 MsG0780041065.01.T01:CDS 25.0%
! GGAATATAAATGGAAAAAGA+TGG - Chr7:86057682-86057701 MsG0780041065.01.T01:CDS 25.0%
! TACTATAAGAATTGTTCTGA+GGG - Chr7:86058600-86058619 MsG0780041065.01.T01:CDS 25.0%
! TACTCATGCAAATATTAGAA+TGG - Chr7:86058698-86058717 MsG0780041065.01.T01:CDS 25.0%
! TGTTGACAAAATGAAAACAA+TGG - Chr7:86058375-86058394 MsG0780041065.01.T01:CDS 25.0%
!! CACTGAATATAATTTTGAAC+TGG + Chr7:86057653-86057672 None:intergenic 25.0%
AAGAAACAAGGAACATAAGA+AGG - Chr7:86058174-86058193 MsG0780041065.01.T01:CDS 30.0%
ATAAATGGAAAAAGATGGAG+AGG - Chr7:86057687-86057706 MsG0780041065.01.T01:CDS 30.0%
ATCATTCTCAGAAGGATAAA+TGG + Chr7:86058092-86058111 None:intergenic 30.0%
CAAAATTATATTCAGTGGTC+AGG - Chr7:86057656-86057675 MsG0780041065.01.T01:CDS 30.0%
CATGCAAATATTAGAATGGT+TGG - Chr7:86058702-86058721 MsG0780041065.01.T01:CDS 30.0%
CTACTATAAGAATTGTTCTG+AGG - Chr7:86058599-86058618 MsG0780041065.01.T01:CDS 30.0%
GATTTGCATAATGAAGAGTT+TGG + Chr7:86058816-86058835 None:intergenic 30.0%
GTCTTTGTATGAGAAATATG+AGG - Chr7:86058956-86058975 MsG0780041065.01.T01:CDS 30.0%
TGCAAACAAAATGTTCAAAC+CGG + Chr7:86057628-86057647 None:intergenic 30.0%
TGCAACATTGATACAAAAGT+AGG - Chr7:86058889-86058908 MsG0780041065.01.T01:CDS 30.0%
TTAGATAACAAAGCAGTAGT+TGG - Chr7:86057359-86057378 MsG0780041065.01.T01:CDS 30.0%
!! ACGGATAAAGATTTGCTTTT+AGG + Chr7:86058643-86058662 None:intergenic 30.0%
!! TTCTGAGAGAAATTTTGAGA+AGG - Chr7:86058756-86058775 MsG0780041065.01.T01:CDS 30.0%
AAGAGATAGTGAACTCTGTT+GGG - Chr7:86057471-86057490 MsG0780041065.01.T01:CDS 35.0%
AAGTCAGCTTCATTTACTGT+TGG - Chr7:86058460-86058479 MsG0780041065.01.T01:CDS 35.0%
AATCATATCTGCATAGCGAA+GGG + Chr7:86058500-86058519 None:intergenic 35.0%
AGCAAGCAGTTAGGAAATAT+AGG - Chr7:86058241-86058260 MsG0780041065.01.T01:CDS 35.0%
CACTATTTACTGTATTGGAG+AGG - Chr7:86057948-86057967 MsG0780041065.01.T01:CDS 35.0%
CTAAATTATGCCTCAGCAAT+AGG - Chr7:86058434-86058453 MsG0780041065.01.T01:CDS 35.0%
CTCTTGTCAAGTGAAAAGTA+TGG + Chr7:86058151-86058170 None:intergenic 35.0%
GAGAGGATCATATTTGTGTT+TGG - Chr7:86057965-86057984 MsG0780041065.01.T01:CDS 35.0%
GCAAGCAGTTAGGAAATATA+GGG - Chr7:86058242-86058261 MsG0780041065.01.T01:CDS 35.0%
GGAGAGGAAAGTGAAAAAAA+TGG - Chr7:86057703-86057722 MsG0780041065.01.T01:CDS 35.0%
TCTCTCAGAATGCAAACTTA+TGG + Chr7:86058746-86058765 None:intergenic 35.0%
TGACAAGAGCAAAAGAAACA+AGG - Chr7:86058162-86058181 MsG0780041065.01.T01:CDS 35.0%
TGAGGATGATGATTACTTGA+TGG - Chr7:86057511-86057530 MsG0780041065.01.T01:CDS 35.0%
! CAAAGCAGTAGTTGGAATTT+TGG - Chr7:86057367-86057386 MsG0780041065.01.T01:CDS 35.0%
! GATCTCAATGGATTCAATTC+AGG - Chr7:86058109-86058128 MsG0780041065.01.T01:CDS 35.0%
! GATTCAATTCAGGTTCTGTT+GGG - Chr7:86058119-86058138 MsG0780041065.01.T01:CDS 35.0%
! GATTGTATTGATCGAGAAGA+TGG - Chr7:86058516-86058535 MsG0780041065.01.T01:CDS 35.0%
! TCAGTTTCTTGCTGTAAAGA+TGG + Chr7:86058004-86058023 None:intergenic 35.0%
! TTTCTTGCTGTAAAGATGGT+AGG + Chr7:86058000-86058019 None:intergenic 35.0%
!! GATCAAAAGGTTAGTTTCTG+AGG - Chr7:86057493-86057512 MsG0780041065.01.T01:CDS 35.0%
AATGTATTATTGCGCGAGAC+CGG + Chr7:86057341-86057360 None:intergenic 40.0%
ACAGACATGCAACTTCTGAA+TGG + Chr7:86058268-86058287 None:intergenic 40.0%
AGCAAAAACTGAAGCTGCAA+TGG - Chr7:86058837-86058856 MsG0780041065.01.T01:CDS 40.0%
AGCAAATTCCAACCTATCTC+TGG + Chr7:86058917-86058936 None:intergenic 40.0%
ATCTAAGAGACATGTCTCCA+TGG - Chr7:86057885-86057904 MsG0780041065.01.T01:CDS 40.0%
ATGAGAGGTGAAATGGTGAA+TGG - Chr7:86057293-86057312 MsG0780041065.01.T01:CDS 40.0%
ATGGTTCAATTCTTTGTGGC+CGG - Chr7:86057319-86057338 MsG0780041065.01.T01:CDS 40.0%
ATTATATTCAGTGGTCAGGG+TGG - Chr7:86057660-86057679 MsG0780041065.01.T01:CDS 40.0%
CAAAAGTAGGTACCAGAGAT+AGG - Chr7:86058902-86058921 MsG0780041065.01.T01:CDS 40.0%
CAATCATATCTGCATAGCGA+AGG + Chr7:86058501-86058520 None:intergenic 40.0%
CCATTGAGATCATTCTCAGA+AGG + Chr7:86058100-86058119 None:intergenic 40.0%
CTCTTCGCAAAATTGTGTTG+TGG + Chr7:86057744-86057763 None:intergenic 40.0%
CTGACTTTAACCTATTGCTG+AGG + Chr7:86058447-86058466 None:intergenic 40.0%
GAAGAGATAGTGAACTCTGT+TGG - Chr7:86057470-86057489 MsG0780041065.01.T01:CDS 40.0%
GCAATGGTTGATCTTCTTGT+AGG - Chr7:86058853-86058872 MsG0780041065.01.T01:CDS 40.0%
GCATAATGAAGAGTTTGGAC+TGG + Chr7:86058811-86058830 None:intergenic 40.0%
GCTAGCACTAGATCATTGAA+TGG - Chr7:86058934-86058953 MsG0780041065.01.T01:CDS 40.0%
GGTCATGGTTCAATTCTTTG+TGG - Chr7:86057315-86057334 MsG0780041065.01.T01:CDS 40.0%
GTGGCAGTCTTTGAATGATT+GGG - Chr7:86057430-86057449 MsG0780041065.01.T01:CDS 40.0%
TCAGCTTCATTTACTGTTGG+TGG - Chr7:86058463-86058482 MsG0780041065.01.T01:CDS 40.0%
TGAACTCTGTTGGGATCAAA+AGG - Chr7:86057480-86057499 MsG0780041065.01.T01:CDS 40.0%
TGAGAGGTGAAATGGTGAAT+GGG - Chr7:86057294-86057313 MsG0780041065.01.T01:CDS 40.0%
TGATTATGTTGTTCGGTTGC+TGG - Chr7:86057919-86057938 MsG0780041065.01.T01:CDS 40.0%
TGTCGAAGATGACTAACTTG+TGG - Chr7:86057411-86057430 MsG0780041065.01.T01:CDS 40.0%
TGTGGCAGTCTTTGAATGAT+TGG - Chr7:86057429-86057448 MsG0780041065.01.T01:CDS 40.0%
TGTTCAAACCGGTGATAAAC+CGG + Chr7:86057617-86057636 None:intergenic 40.0%
TTATATTCAGTGGTCAGGGT+GGG - Chr7:86057661-86057680 MsG0780041065.01.T01:CDS 40.0%
TTCGCAAAATTGTGTTGTGG+AGG + Chr7:86057741-86057760 None:intergenic 40.0%
TTGTGCTTTCGACCTTTATC+TGG + Chr7:86058211-86058230 None:intergenic 40.0%
! ATGGTTATGGTGGTTCTATG+AGG - Chr7:86058329-86058348 MsG0780041065.01.T01:CDS 40.0%
! CCTTCTGAGAATGATCTCAA+TGG - Chr7:86058097-86058116 MsG0780041065.01.T01:CDS 40.0%
! GGATTCAATTCAGGTTCTGT+TGG - Chr7:86058118-86058137 MsG0780041065.01.T01:CDS 40.0%
!! ATTGGGAGGTGTTGAATTTG+AGG - Chr7:86057447-86057466 MsG0780041065.01.T01:CDS 40.0%
!! TTGGGAGGTGTTGAATTTGA+GGG - Chr7:86057448-86057467 MsG0780041065.01.T01:CDS 40.0%
AACTTCAACCGATGCAGTTC+AGG + Chr7:86057818-86057837 None:intergenic 45.0%
AAGCGAATCCTGAACTGCAT+CGG - Chr7:86057807-86057826 MsG0780041065.01.T01:CDS 45.0%
AGTAGGTACCAGAGATAGGT+TGG - Chr7:86058906-86058925 MsG0780041065.01.T01:CDS 45.0%
CCTTGCAGCAAAATCAAGCT+CGG - Chr7:86058675-86058694 MsG0780041065.01.T01:CDS 45.0%
GCAGTCTTTGAATGATTGGG+AGG - Chr7:86057433-86057452 MsG0780041065.01.T01:CDS 45.0%
GCTCTTCATCCACCAGATAA+AGG - Chr7:86058196-86058215 MsG0780041065.01.T01:CDS 45.0%
GGTCAGGGTGGGAATATAAA+TGG - Chr7:86057672-86057691 MsG0780041065.01.T01:CDS 45.0%
GTGAAATGGTGAATGGGTCA+TGG - Chr7:86057300-86057319 MsG0780041065.01.T01:CDS 45.0%
GTTGCTCGAGTTTCAGAAGA+AGG - Chr7:86057835-86057854 MsG0780041065.01.T01:CDS 45.0%
TGCAAGGTCTGCATCATGAA+CGG + Chr7:86058662-86058681 None:intergenic 45.0%
TGCACACAACTCTGTATGAC+AGG + Chr7:86058304-86058323 None:intergenic 45.0%
TGCTTTCGACCTTTATCTGG+TGG + Chr7:86058208-86058227 None:intergenic 45.0%
TGTGTGCAGACAGATGGTTA+TGG - Chr7:86058316-86058335 MsG0780041065.01.T01:CDS 45.0%
! AGAGCTTGAAGTACTAGCAG+AGG - Chr7:86057760-86057779 MsG0780041065.01.T01:CDS 45.0%
! TCAATTCAGGTTCTGTTGGG+AGG - Chr7:86058122-86058141 MsG0780041065.01.T01:CDS 45.0%
!! CGTTCTGAAAGCAAGCAGTT+AGG - Chr7:86058232-86058251 MsG0780041065.01.T01:CDS 45.0%
!! CTTATGGTGTTGTGTGCAAG+TGG + Chr7:86058730-86058749 None:intergenic 45.0%
CAGAGTTGTGTGCAGACAGA+TGG - Chr7:86058310-86058329 MsG0780041065.01.T01:CDS 50.0%
GCACAGATCCGGTTTATCAC+CGG - Chr7:86057606-86057625 MsG0780041065.01.T01:CDS 50.0%
GTGCAGACAGATGGTTATGG+TGG - Chr7:86058319-86058338 MsG0780041065.01.T01:CDS 50.0%
TGTGCACCTCTTACCAAACC+TGG + Chr7:86057591-86057610 None:intergenic 50.0%
! ATTCAGGTTCTGTTGGGAGG+AGG - Chr7:86058125-86058144 MsG0780041065.01.T01:CDS 50.0%
! CCGAGCTTGATTTTGCTGCA+AGG + Chr7:86058678-86058697 None:intergenic 50.0%
! CTGTTGCCAGGTTTGGTAAG+AGG - Chr7:86057582-86057601 MsG0780041065.01.T01:CDS 50.0%
! TGGTAAGAGGTGCACAGATC+CGG - Chr7:86057595-86057614 MsG0780041065.01.T01:CDS 50.0%
CTTGTCAGCGTCAGGAAGTG+AGG - Chr7:86057861-86057880 MsG0780041065.01.T01:CDS 55.0%
GCGCAATCTGTTGCCAGGTT+TGG - Chr7:86057575-86057594 MsG0780041065.01.T01:CDS 55.0%
TGCTAGCGCAATCTGTTGCC+AGG - Chr7:86057570-86057589 MsG0780041065.01.T01:CDS 55.0%
GAAGGTCGCTTGTCAGCGTC+AGG - Chr7:86057853-86057872 MsG0780041065.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 86057293 86058984 86057293 ID=MsG0780041065.01;Name=MsG0780041065.01
Chr7 mRNA 86057293 86058984 86057293 ID=MsG0780041065.01.T01;Parent=MsG0780041065.01;Name=MsG0780041065.01.T01;_AED=0.18;_eAED=0.18;_QI=0|-1|0|1|-1|1|1|0|563
Chr7 exon 86057293 86058984 86057293 ID=MsG0780041065.01.T01:exon:19508;Parent=MsG0780041065.01.T01
Chr7 CDS 86057293 86058984 86057293 ID=MsG0780041065.01.T01:cds;Parent=MsG0780041065.01.T01
Gene Sequence

>MsG0780041065.01.T01

ATGAGAGGTGAAATGGTGAATGGGTCATGGTTCAATTCTTTGTGGCCGGTCTCGCGCAATAATACATTAGATAACAAAGCAGTAGTTGGAATTTTGGCGTTAGAAGTTGCGAGTTTGATGTCGAAGATGACTAACTTGTGGCAGTCTTTGAATGATTGGGAGGTGTTGAATTTGAGGGAAGAGATAGTGAACTCTGTTGGGATCAAAAGGTTAGTTTCTGAGGATGATGATTACTTGATGGAGCTTGTATTGAATGATATACTTGATAGTTTTCAATTGCTAGCGCAATCTGTTGCCAGGTTTGGTAAGAGGTGCACAGATCCGGTTTATCACCGGTTTGAACATTTTGTTTGCAATCCAGTTCAAAATTATATTCAGTGGTCAGGGTGGGAATATAAATGGAAAAAGATGGAGAGGAAAGTGAAAAAAATGGAAAAATTTGTGGCCTCCACAACACAATTTTGCGAAGAGCTTGAAGTACTAGCAGAGGTTGAACAGACTTTCAGAAGAATGCAAGCGAATCCTGAACTGCATCGGTTGAAGTTGCTCGAGTTTCAGAAGAAGGTCGCTTGTCAGCGTCAGGAAGTGAGGAATCTAAGAGACATGTCTCCATGGAATAAAAGTTATGATTATGTTGTTCGGTTGCTGGTAAAATCACTATTTACTGTATTGGAGAGGATCATATTTGTGTTTGGAAATAATCACCTACCATCTTTACAGCAAGAAACTGACTCACAGAATATGAATGCTAACAATCTTCTGCGCAGTCAATCTTTTTCTGTTTTTATGCATTCTTCCATTTATCCTTCTGAGAATGATCTCAATGGATTCAATTCAGGTTCTGTTGGGAGGAGGCCATACTTTTCACTTGACAAGAGCAAAAGAAACAAGGAACATAAGAAGGCTCTTCATCCACCAGATAAAGGTCGAAAGCACAAACGTTCTGAAAGCAAGCAGTTAGGAAATATAGGGCCATTCAGAAGTTGCATGTCTGTTACAAGCAATTCTCCTGTCATACAGAGTTGTGTGCAGACAGATGGTTATGGTGGTTCTATGAGGTTGACTGATTCTCATATGAAACATGTTGACAAAATGAAAACAATGGATAAATCATCTCTCTCCAACAGAATTAGAATATATTCTAAATTATGCCTCAGCAATAGGTTAAAGTCAGCTTCATTTACTGTTGGTGGTGCAGCTTTAGCCCTTCGCTATGCAGATATGATTGTATTGATCGAGAAGATGGCATCATCGCTTCACTCAATTGATTTGAAAGCAAGAGATGATTTGTACAATATGCTTCCAACTACTATAAGAATTGTTCTGAGGGCTAAGCTCAAATATCGTCCTAAAAGCAAATCTTTATCCGTTCATGATGCAGACCTTGCAGCAAAATCAAGCTCGGTACTCATGCAAATATTAGAATGGTTGGCTCCACTTGCACACAACACCATAAGTTTGCATTCTGAGAGAAATTTTGAGAAGGAGCATTCATTTGTAAAAGCAAATATTTTACCAGTCCAAACTCTTCATTATGCAAATCAAGCAAAAACTGAAGCTGCAATGGTTGATCTTCTTGTAGGTCTTAACTGTGTATGCAACATTGATACAAAAGTAGGTACCAGAGATAGGTTGGAATTTGCTAGCACTAGATCATTGAATGGTCTTTGTATGAGAAATATGAGGATCTAA

Protein sequence

>MsG0780041065.01.T01

MRGEMVNGSWFNSLWPVSRNNTLDNKAVVGILALEVASLMSKMTNLWQSLNDWEVLNLREEIVNSVGIKRLVSEDDDYLMELVLNDILDSFQLLAQSVARFGKRCTDPVYHRFEHFVCNPVQNYIQWSGWEYKWKKMERKVKKMEKFVASTTQFCEELEVLAEVEQTFRRMQANPELHRLKLLEFQKKVACQRQEVRNLRDMSPWNKSYDYVVRLLVKSLFTVLERIIFVFGNNHLPSLQQETDSQNMNANNLLRSQSFSVFMHSSIYPSENDLNGFNSGSVGRRPYFSLDKSKRNKEHKKALHPPDKGRKHKRSESKQLGNIGPFRSCMSVTSNSPVIQSCVQTDGYGGSMRLTDSHMKHVDKMKTMDKSSLSNRIRIYSKLCLSNRLKSASFTVGGAALALRYADMIVLIEKMASSLHSIDLKARDDLYNMLPTTIRIVLRAKLKYRPKSKSLSVHDADLAAKSSSVLMQILEWLAPLAHNTISLHSERNFEKEHSFVKANILPVQTLHYANQAKTEAAMVDLLVGLNCVCNIDTKVGTRDRLEFASTRSLNGLCMRNMRI*