AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024923.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024923.01.T01 MTR_5g019350 97.384 344 8 1 26 369 1 343 0.0 691
MsG0580024923.01.T01 MTR_8g078170 55.866 358 131 7 26 368 1 346 3.07e-134 387
MsG0580024923.01.T01 MTR_1g021955 40.663 332 184 4 26 350 1 326 3.69e-81 252
MsG0580024923.01.T01 MTR_2091s0010 49.565 230 109 4 121 348 17 241 4.49e-72 226
MsG0580024923.01.T01 MTR_3g063050 34.247 219 142 1 135 351 99 317 7.18e-45 157
MsG0580024923.01.T01 MTR_5g076060 33.023 215 142 1 135 347 92 306 4.23e-41 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024923.01.T01 AT2G23790 48.810 336 144 7 26 348 1 321 1.88e-110 326
MsG0580024923.01.T01 AT4G36820 46.407 334 153 6 28 349 4 323 6.00e-101 302
MsG0580024923.01.T01 AT5G66650 45.455 330 161 5 26 351 1 315 4.26e-95 286
MsG0580024923.01.T01 AT5G42610 42.264 265 141 3 90 346 21 281 3.79e-70 222
MsG0580024923.01.T01 AT1G57610 33.198 247 148 6 139 369 46 291 6.74e-40 143
MsG0580024923.01.T01 AT1G57610 33.198 247 148 6 139 369 46 291 6.74e-40 143
MsG0580024923.01.T01 AT1G09575 31.858 226 150 3 124 346 36 260 4.85e-36 133
MsG0580024923.01.T01 AT1G09575 31.858 226 150 3 124 346 36 260 4.85e-36 133
MsG0580024923.01.T01 AT1G57610 34.783 161 100 4 139 295 46 205 1.12e-23 97.8
MsG0580024923.01.T01 AT1G57610 34.783 161 100 4 139 295 46 205 1.12e-23 97.8

Find 79 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTTGATCGTGAGCTTT+GGG 0.230410 5:-11691001 MsG0580024923.01.T01:CDS
GGGAGGTTTGGGTTTCATTA+TGG 0.238660 5:-11690980 MsG0580024923.01.T01:CDS
CGTGAGCTTTGGGGAGGTTT+GGG 0.254572 5:-11690991 MsG0580024923.01.T01:CDS
TATTAATGAGACTCACCTTT+TGG 0.277484 5:-11690945 MsG0580024923.01.T01:CDS
CCTTGGTTGATCGTGAGCTT+TGG 0.301670 5:-11691002 MsG0580024923.01.T01:CDS
TTGAACCCGGTTTGTTGTTT+CGG 0.305567 5:+11692381 None:intergenic
AAGCAGACTTTGGAGTGTTT+TGG 0.306984 5:+11691116 None:intergenic
TCTGCGGCTGTGATTATTCT+TGG 0.316398 5:-11692054 MsG0580024923.01.T01:CDS
TTCTATGAATTTATCATCAA+TGG 0.344465 5:-11692586 MsG0580024923.01.T01:CDS
TCGTGAGCTTTGGGGAGGTT+TGG 0.348113 5:-11690992 MsG0580024923.01.T01:CDS
TTCAGCTTCTCCATCAGGTT+TGG 0.348246 5:+11692342 None:intergenic
TCACCTGAACCAGGCGATAA+TGG 0.350235 5:-11692444 MsG0580024923.01.T01:CDS
AAAGAGTTGTGTAACGGTTT+CGG 0.363987 5:-11692151 MsG0580024923.01.T01:CDS
AAGAAAAGAATATGAAGAAA+TGG 0.369837 5:-11691061 MsG0580024923.01.T01:CDS
CAAAACGCCGGCGGAGAAAC+CGG 0.374721 5:-11692271 MsG0580024923.01.T01:CDS
GAATCTGATACCTTTATTCC+CGG 0.374775 5:+11691087 None:intergenic
GCACCATTATCGCCTGGTTC+AGG 0.377867 5:+11692441 None:intergenic
GCTTCCTACACCGGGAATAA+AGG 0.384345 5:-11691097 MsG0580024923.01.T01:CDS
TGTGTTTCTTAGACCTGAAC+AGG 0.390526 5:-11692025 MsG0580024923.01.T01:intron
TTGTTGTTTCGGTTCAAAAC+CGG 0.401588 5:+11692392 None:intergenic
GGAGCTTACTTGGGATGTAA+TGG 0.424436 5:-11690923 MsG0580024923.01.T01:CDS
GGATGTTAAATAGAAGCAAA+TGG 0.426288 5:+11690897 None:intergenic
TCTAAAAGAAGGTTCTTTCC+CGG 0.428851 5:+11690837 None:intergenic
CTCACGATCAACCAAGGCTT+CGG 0.444848 5:+11691008 None:intergenic
GGCATCGCCGGTTTCTCCGC+CGG 0.448751 5:+11692264 None:intergenic
TTCAGGTGAAATGTCAGATT+CGG 0.456460 5:+11692458 None:intergenic
CCGTCCTCCTTCGGCATCGC+CGG 0.460693 5:+11692252 None:intergenic
CCGGTGTAGGAAGCAGACTT+TGG 0.466737 5:+11691106 None:intergenic
AGATTCATTCACAAACGAAC+CGG 0.482504 5:-11692411 MsG0580024923.01.T01:CDS
TATACATTCTTCCTCAAGAC+CGG 0.484488 5:-11690856 MsG0580024923.01.T01:CDS
CAAAATTGTGAAGCTTCATA+AGG 0.484983 5:+11690776 None:intergenic
GAATGAAAATGAAAATGAAA+AGG 0.490455 5:+11692634 None:intergenic
TCAAACATAGGAGGAACATT+GGG 0.496062 5:+11690715 None:intergenic
ACATCCATGTACTTCATGAC+TGG 0.497631 5:-11690880 MsG0580024923.01.T01:CDS
ACGCTAACACCGTCCTCCTT+CGG 0.498436 5:+11692243 None:intergenic
TTTGAACCGAAACAACAAAC+CGG 0.498499 5:-11692387 MsG0580024923.01.T01:CDS
GATGTTAAATAGAAGCAAAT+GGG 0.503470 5:+11690898 None:intergenic
TTGAATGCACCATTATCGCC+TGG 0.506676 5:+11692435 None:intergenic
CGATGAAGAAGCCGAAGCCT+TGG 0.509562 5:-11691019 MsG0580024923.01.T01:CDS
ATCAAACATAGGAGGAACAT+TGG 0.516274 5:+11690714 None:intergenic
AGGAATCGTATTCGGTTGGA+TGG 0.519037 5:-11692303 MsG0580024923.01.T01:CDS
ACAATGGTAGGAATCGTATT+CGG 0.527920 5:-11692311 MsG0580024923.01.T01:CDS
ATCCCAAGTAAGCTCCCAAA+AGG 0.531115 5:+11690930 None:intergenic
CCAAAGTCTGCTTCCTACAC+CGG 0.541189 5:-11691106 MsG0580024923.01.T01:CDS
GGAGAAACCGGCGATGCCGA+AGG 0.544555 5:-11692259 MsG0580024923.01.T01:CDS
GGCTTCGGCTTCTTCATCGA+TGG 0.544645 5:+11691023 None:intergenic
TGAAAACAATGGACAATGGT+AGG 0.544936 5:-11692323 MsG0580024923.01.T01:CDS
AATTAGAGATGGTGAAATCA+AGG 0.551504 5:-11692188 MsG0580024923.01.T01:CDS
TTCAGATGTGAGAGCAGTGG+AGG 0.554859 5:+11690690 None:intergenic
CTTAACCGCTTGATCATGAT+CGG 0.561818 5:+11692098 None:intergenic
GATACCTTTATTCCCGGTGT+AGG 0.564773 5:+11691093 None:intergenic
TTGAACCGAAACAACAAACC+GGG 0.566687 5:-11692386 MsG0580024923.01.T01:CDS
CAAAGTCTGCTTCCTACACC+GGG 0.576474 5:-11691105 MsG0580024923.01.T01:CDS
GCTTCATCAACCAAACCTGA+TGG 0.578108 5:-11692352 MsG0580024923.01.T01:CDS
TGGTAGGAATCGTATTCGGT+TGG 0.582305 5:-11692307 MsG0580024923.01.T01:CDS
ATACATTCTTCCTCAAGACC+GGG 0.582455 5:-11690855 MsG0580024923.01.T01:CDS
CCGGCGATGCCGAAGGAGGA+CGG 0.583995 5:-11692252 MsG0580024923.01.T01:CDS
ATCATCAAAGAGTTGTGTAA+CGG 0.585112 5:-11692157 MsG0580024923.01.T01:CDS
ATGAAGCTCTGATTTGAACC+CGG 0.585317 5:+11692368 None:intergenic
TCTGACATTTCACCTGAACC+AGG 0.594187 5:-11692453 MsG0580024923.01.T01:CDS
GAAACCGGCGATGCCGAAGG+AGG 0.600175 5:-11692256 MsG0580024923.01.T01:CDS
AGATGTGAAGAAATTGTTGA+AGG 0.600974 5:-11692217 MsG0580024923.01.T01:CDS
GTTGATCGTGAGCTTTGGGG+AGG 0.603066 5:-11690997 MsG0580024923.01.T01:CDS
TTGTTCCGATCATGATCAAG+CGG 0.606479 5:-11692103 MsG0580024923.01.T01:CDS
GCAGTGGAGGAATCAAACAT+AGG 0.610101 5:+11690703 None:intergenic
ATAACCAGTCATGAAGTACA+TGG 0.615299 5:+11690876 None:intergenic
AAGGTTCTTTCCCGGTCTTG+AGG 0.616769 5:+11690845 None:intergenic
TTAAGAGAACGCTTGCACAA+CGG 0.623956 5:-11692560 MsG0580024923.01.T01:CDS
CCAAAGCTCACGATCAACCA+AGG 0.631926 5:+11691002 None:intergenic
GAAGATGCTTGATGATTCTG+CGG 0.634104 5:-11692070 MsG0580024923.01.T01:CDS
AAGGAGGACGGTGTTAGCGT+CGG 0.634588 5:-11692240 MsG0580024923.01.T01:CDS
GTGGAGGAATCAAACATAGG+AGG 0.637959 5:+11690706 None:intergenic
GATGGAGAAGCTGAAAACAA+TGG 0.643760 5:-11692334 MsG0580024923.01.T01:CDS
TGGATTGATCATCAAAACGC+CGG 0.650680 5:-11692283 MsG0580024923.01.T01:CDS
TTGGTTGATCGTGAGCTTTG+GGG 0.652972 5:-11691000 MsG0580024923.01.T01:CDS
AAGCTGAAAACAATGGACAA+TGG 0.660072 5:-11692327 MsG0580024923.01.T01:CDS
TGTGAAGAAATTGTTGAAGG+TGG 0.674048 5:-11692214 MsG0580024923.01.T01:CDS
GAAGGTGGCGCAATTAGAGA+TGG 0.677578 5:-11692199 MsG0580024923.01.T01:CDS
ATTGATCATCAAAACGCCGG+CGG 0.739309 5:-11692280 MsG0580024923.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTTATTGATTATT+GGG - Chr5:11691378-11691397 MsG0580024923.01.T01:intron 10.0%
!!! ACATGTTTTATTTAATTTGT+GGG - Chr5:11691406-11691425 MsG0580024923.01.T01:intron 15.0%
!!! GTGTTTTTTTTATTGATTAT+TGG - Chr5:11691377-11691396 MsG0580024923.01.T01:intron 15.0%
!!! TACATGTTTTATTTAATTTG+TGG - Chr5:11691405-11691424 MsG0580024923.01.T01:intron 15.0%
!!! TTTTTTTTCCTATTTACTTT+TGG + Chr5:11692134-11692153 None:intergenic 15.0%
!! AAGAAAAACCAAAAGTAAAT+AGG - Chr5:11692123-11692142 MsG0580024923.01.T01:CDS 20.0%
!! AAGAAAAGAATATGAAGAAA+TGG - Chr5:11692253-11692272 MsG0580024923.01.T01:CDS 20.0%
!! AGTAGTTAATTCCATTTATT+TGG - Chr5:11691512-11691531 MsG0580024923.01.T01:intron 20.0%
!! ATTATCAGTTTCCAAATAAA+TGG + Chr5:11691526-11691545 None:intergenic 20.0%
!! CCTAGTCTAAAAATAATTAA+GGG + Chr5:11691681-11691700 None:intergenic 20.0%
!! GAATGAAAATGAAAATGAAA+AGG + Chr5:11690683-11690702 None:intergenic 20.0%
!! GTAATAATGTAATGTAATGA+TGG - Chr5:11691443-11691462 MsG0580024923.01.T01:intron 20.0%
!! TCCTAGTCTAAAAATAATTA+AGG + Chr5:11691682-11691701 None:intergenic 20.0%
!! TTCTATGAATTTATCATCAA+TGG - Chr5:11690728-11690747 MsG0580024923.01.T01:CDS 20.0%
! AAAGAAAAATTTACCTGTTC+AGG + Chr5:11691305-11691324 None:intergenic 25.0%
! AAGTGAGTTTGATGAAATTA+TGG - Chr5:11691927-11691946 MsG0580024923.01.T01:intron 25.0%
! ACCATTAATTGAAAGTTAGA+GGG - Chr5:11691753-11691772 MsG0580024923.01.T01:intron 25.0%
! GATGTTAAATAGAAGCAAAT+GGG + Chr5:11692419-11692438 None:intergenic 25.0%
! TACCATTAATTGAAAGTTAG+AGG - Chr5:11691752-11691771 MsG0580024923.01.T01:intron 25.0%
!! ATGTAATGTAATGATGGAAA+TGG - Chr5:11691449-11691468 MsG0580024923.01.T01:intron 25.0%
!! CACAAAATTTTACAGAGTTT+GGG + Chr5:11692168-11692187 None:intergenic 25.0%
!! TCACAAAATTTTACAGAGTT+TGG + Chr5:11692169-11692188 None:intergenic 25.0%
!! TCTGTAAAATTTTGTGATAC+AGG - Chr5:11692172-11692191 MsG0580024923.01.T01:CDS 25.0%
!! TTCTAATATATGTCCCTTTT+AGG - Chr5:11692051-11692070 MsG0580024923.01.T01:CDS 25.0%
!!! CCCTTAATTATTTTTAGACT+AGG - Chr5:11691678-11691697 MsG0580024923.01.T01:intron 25.0%
!!! GATTTTGACAAAAGTTACTT+TGG - Chr5:11691959-11691978 MsG0580024923.01.T01:intron 25.0%
!!! TTACTTTTGGTTTTTCTTCT+AGG + Chr5:11692121-11692140 None:intergenic 25.0%
AAATGGTGAAGATCAAAGAT+AGG - Chr5:11691466-11691485 MsG0580024923.01.T01:intron 30.0%
AATTAGAGATGGTGAAATCA+AGG - Chr5:11691126-11691145 MsG0580024923.01.T01:intron 30.0%
ACCCTCTAACTTTCAATTAA+TGG + Chr5:11691757-11691776 None:intergenic 30.0%
ACTTCACAACTATACCTAAA+AGG + Chr5:11692068-11692087 None:intergenic 30.0%
AGAAATGGAGAAAAAGAAGT+TGG - Chr5:11692268-11692287 MsG0580024923.01.T01:CDS 30.0%
AGATGTGAAGAAATTGTTGA+AGG - Chr5:11691097-11691116 MsG0580024923.01.T01:CDS 30.0%
ATCATCAAAGAGTTGTGTAA+CGG - Chr5:11691157-11691176 MsG0580024923.01.T01:intron 30.0%
CAAAATTGTGAAGCTTCATA+AGG + Chr5:11692541-11692560 None:intergenic 30.0%
CTTCACAACTATACCTAAAA+GGG + Chr5:11692067-11692086 None:intergenic 30.0%
GGATGTTAAATAGAAGCAAA+TGG + Chr5:11692420-11692439 None:intergenic 30.0%
TCATCTAAACATACACTTGA+TGG - Chr5:11692006-11692025 MsG0580024923.01.T01:intron 30.0%
TTAAAAAGCTTAACCAAGAG+AGG + Chr5:11691828-11691847 None:intergenic 30.0%
! ATTAATGAGACTCACCTTTT+GGG - Chr5:11692370-11692389 MsG0580024923.01.T01:CDS 30.0%
! GAGATTTTGTGATGAGATTT+TGG + Chr5:11690793-11690812 None:intergenic 30.0%
! TATTAATGAGACTCACCTTT+TGG - Chr5:11692369-11692388 MsG0580024923.01.T01:CDS 30.0%
! TCGTAAAAACCTCTAAAAGA+AGG + Chr5:11692491-11692510 None:intergenic 30.0%
!! TGTTTCGAGAAAAGTGTTAA+AGG - Chr5:11691598-11691617 MsG0580024923.01.T01:intron 30.0%
!! TTTATTTTCCAATCCTCTCT+TGG - Chr5:11691812-11691831 MsG0580024923.01.T01:intron 30.0%
AAAGAGTTGTGTAACGGTTT+CGG - Chr5:11691163-11691182 MsG0580024923.01.T01:intron 35.0%
AAGCTGAAAACAATGGACAA+TGG - Chr5:11690987-11691006 MsG0580024923.01.T01:CDS 35.0%
AATCAAGGAGGATTCACAAT+TGG - Chr5:11691786-11691805 MsG0580024923.01.T01:intron 35.0%
AATCCTCCTTGATTGAATCT+AGG + Chr5:11691780-11691799 None:intergenic 35.0%
ACAATGGTAGGAATCGTATT+CGG - Chr5:11691003-11691022 MsG0580024923.01.T01:CDS 35.0%
AGATTCATTCACAAACGAAC+CGG - Chr5:11690903-11690922 MsG0580024923.01.T01:CDS 35.0%
ATAACCAGTCATGAAGTACA+TGG + Chr5:11692441-11692460 None:intergenic 35.0%
ATAGTGATGAATGAAAGCTC+TGG + Chr5:11691639-11691658 None:intergenic 35.0%
ATCAAACATAGGAGGAACAT+TGG + Chr5:11692603-11692622 None:intergenic 35.0%
ATCAAGGAGGATTCACAATT+GGG - Chr5:11691787-11691806 MsG0580024923.01.T01:intron 35.0%
ATGCCATTACCTTTAACCTA+AGG + Chr5:11691870-11691889 None:intergenic 35.0%
GAATCTGATACCTTTATTCC+CGG + Chr5:11692230-11692249 None:intergenic 35.0%
TATACATTCTTCCTCAAGAC+CGG - Chr5:11692458-11692477 MsG0580024923.01.T01:CDS 35.0%
TCAAACATAGGAGGAACATT+GGG + Chr5:11692602-11692621 None:intergenic 35.0%
TCTAAAAGAAGGTTCTTTCC+CGG + Chr5:11692480-11692499 None:intergenic 35.0%
TGAAAACAATGGACAATGGT+AGG - Chr5:11690991-11691010 MsG0580024923.01.T01:CDS 35.0%
TGTGAAGAAATTGTTGAAGG+TGG - Chr5:11691100-11691119 MsG0580024923.01.T01:CDS 35.0%
TTAAGTTAGACATGCGTCTT+TGG - Chr5:11691899-11691918 MsG0580024923.01.T01:intron 35.0%
TTCAGGTGAAATGTCAGATT+CGG + Chr5:11690859-11690878 None:intergenic 35.0%
TTTGAACCGAAACAACAAAC+CGG - Chr5:11690927-11690946 MsG0580024923.01.T01:CDS 35.0%
! AACAATGTTTCGTTTTCCTG+TGG + Chr5:11691579-11691598 None:intergenic 35.0%
! ACATACACTTGATGGTTCAT+AGG - Chr5:11692014-11692033 MsG0580024923.01.T01:intron 35.0%
!! AATTTGTGGGTTGATACAGA+GGG - Chr5:11691419-11691438 MsG0580024923.01.T01:intron 35.0%
!! TAATTTGTGGGTTGATACAG+AGG - Chr5:11691418-11691437 MsG0580024923.01.T01:intron 35.0%
!! TTGTTGTTTCGGTTCAAAAC+CGG + Chr5:11690925-11690944 None:intergenic 35.0%
!!! TTCGGATTTTGAAACACTGA+CGG + Chr5:11690841-11690860 None:intergenic 35.0%
!!! TTCTCGTTTTTTTCTTCCAC+AGG - Chr5:11691560-11691579 MsG0580024923.01.T01:intron 35.0%
AAGCTTAACCAAGAGAGGAT+TGG + Chr5:11691823-11691842 None:intergenic 40.0%
ACATCCATGTACTTCATGAC+TGG - Chr5:11692434-11692453 MsG0580024923.01.T01:CDS 40.0%
ATACATTCTTCCTCAAGACC+GGG - Chr5:11692459-11692478 MsG0580024923.01.T01:CDS 40.0%
CTTAACCGCTTGATCATGAT+CGG + Chr5:11691219-11691238 None:intergenic 40.0%
GATGGAGAAGCTGAAAACAA+TGG - Chr5:11690980-11690999 MsG0580024923.01.T01:CDS 40.0%
GTGCCTTAGGTTAAAGGTAA+TGG - Chr5:11691864-11691883 MsG0580024923.01.T01:intron 40.0%
TGGATTGATCATCAAAACGC+CGG - Chr5:11691031-11691050 MsG0580024923.01.T01:CDS 40.0%
TGTGTTTCTTAGACCTGAAC+AGG - Chr5:11691289-11691308 MsG0580024923.01.T01:intron 40.0%
TTAAGAGAACGCTTGCACAA+CGG - Chr5:11690754-11690773 MsG0580024923.01.T01:CDS 40.0%
TTGAACCGAAACAACAAACC+GGG - Chr5:11690928-11690947 MsG0580024923.01.T01:CDS 40.0%
TTGTTCCGATCATGATCAAG+CGG - Chr5:11691211-11691230 MsG0580024923.01.T01:intron 40.0%
! ATGAAGCTCTGATTTGAACC+CGG + Chr5:11690949-11690968 None:intergenic 40.0%
! ATTTTCAGATGTGAGAGCAG+TGG + Chr5:11692630-11692649 None:intergenic 40.0%
! GAAGATGCTTGATGATTCTG+CGG - Chr5:11691244-11691263 MsG0580024923.01.T01:intron 40.0%
! GGGAAAGAACCTTCTTTTAG+AGG - Chr5:11692479-11692498 MsG0580024923.01.T01:CDS 40.0%
! TGATGAATGAAAGCTCTGGT+GGG + Chr5:11691635-11691654 None:intergenic 40.0%
! TTGTTTTCAGCTTCTCCATC+AGG + Chr5:11690980-11690999 None:intergenic 40.0%
!! ATTTGTGGGTTGATACAGAG+GGG - Chr5:11691420-11691439 MsG0580024923.01.T01:intron 40.0%
!! TTGAACCCGGTTTGTTGTTT+CGG + Chr5:11690936-11690955 None:intergenic 40.0%
!!! AAGCAGACTTTGGAGTGTTT+TGG + Chr5:11692201-11692220 None:intergenic 40.0%
AGGAATCGTATTCGGTTGGA+TGG - Chr5:11691011-11691030 MsG0580024923.01.T01:CDS 45.0%
ATCCCAAGTAAGCTCCCAAA+AGG + Chr5:11692387-11692406 None:intergenic 45.0%
ATTGATCATCAAAACGCCGG+CGG - Chr5:11691034-11691053 MsG0580024923.01.T01:CDS 45.0%
CTTGGTTGATCGTGAGCTTT+GGG - Chr5:11692313-11692332 MsG0580024923.01.T01:CDS 45.0%
GAGGGTCCTAGATTCAATCA+AGG - Chr5:11691771-11691790 MsG0580024923.01.T01:intron 45.0%
GATACCTTTATTCCCGGTGT+AGG + Chr5:11692224-11692243 None:intergenic 45.0%
GCAGTGGAGGAATCAAACAT+AGG + Chr5:11692614-11692633 None:intergenic 45.0%
GCTTCATCAACCAAACCTGA+TGG - Chr5:11690962-11690981 MsG0580024923.01.T01:CDS 45.0%
GGAGCTTACTTGGGATGTAA+TGG - Chr5:11692391-11692410 MsG0580024923.01.T01:CDS 45.0%
GGTCCTAGATTCAATCAAGG+AGG - Chr5:11691774-11691793 MsG0580024923.01.T01:intron 45.0%
GTGGAGGAATCAAACATAGG+AGG + Chr5:11692611-11692630 None:intergenic 45.0%
TATACATTGTCGCGTGCCTT+AGG - Chr5:11691851-11691870 MsG0580024923.01.T01:intron 45.0%
TCTGACATTTCACCTGAACC+AGG - Chr5:11690861-11690880 MsG0580024923.01.T01:CDS 45.0%
TCTGCGGCTGTGATTATTCT+TGG - Chr5:11691260-11691279 MsG0580024923.01.T01:intron 45.0%
TGGTAGGAATCGTATTCGGT+TGG - Chr5:11691007-11691026 MsG0580024923.01.T01:CDS 45.0%
TTCAGCTTCTCCATCAGGTT+TGG + Chr5:11690975-11690994 None:intergenic 45.0%
TTGAATGCACCATTATCGCC+TGG + Chr5:11690882-11690901 None:intergenic 45.0%
TTGGTTGATCGTGAGCTTTG+GGG - Chr5:11692314-11692333 MsG0580024923.01.T01:CDS 45.0%
! GGGAGGTTTGGGTTTCATTA+TGG - Chr5:11692334-11692353 MsG0580024923.01.T01:CDS 45.0%
! GTGATGAATGAAAGCTCTGG+TGG + Chr5:11691636-11691655 None:intergenic 45.0%
!! CACCTTTTGGGAGCTTACTT+GGG - Chr5:11692382-11692401 MsG0580024923.01.T01:CDS 45.0%
!! TCACCTTTTGGGAGCTTACT+TGG - Chr5:11692381-11692400 MsG0580024923.01.T01:CDS 45.0%
!! TTTGTGGGTTGATACAGAGG+GGG - Chr5:11691421-11691440 MsG0580024923.01.T01:intron 45.0%
!!! GGATTTTGAAACACTGACGG+AGG + Chr5:11690838-11690857 None:intergenic 45.0%
AAGGTTCTTTCCCGGTCTTG+AGG + Chr5:11692472-11692491 None:intergenic 50.0%
CAAAGTCTGCTTCCTACACC+GGG - Chr5:11692209-11692228 MsG0580024923.01.T01:CDS 50.0%
CCAAAGCTCACGATCAACCA+AGG + Chr5:11692315-11692334 None:intergenic 50.0%
CCAAAGTCTGCTTCCTACAC+CGG - Chr5:11692208-11692227 MsG0580024923.01.T01:CDS 50.0%
CCTTGGTTGATCGTGAGCTT+TGG - Chr5:11692312-11692331 MsG0580024923.01.T01:CDS 50.0%
CTCACGATCAACCAAGGCTT+CGG + Chr5:11692309-11692328 None:intergenic 50.0%
GAAGGTGGCGCAATTAGAGA+TGG - Chr5:11691115-11691134 MsG0580024923.01.T01:CDS 50.0%
GCTTCCTACACCGGGAATAA+AGG - Chr5:11692217-11692236 MsG0580024923.01.T01:CDS 50.0%
TCACCTGAACCAGGCGATAA+TGG - Chr5:11690870-11690889 MsG0580024923.01.T01:CDS 50.0%
TGTCGCGTGCCTTAGGTTAA+AGG - Chr5:11691858-11691877 MsG0580024923.01.T01:intron 50.0%
TTCAGATGTGAGAGCAGTGG+AGG + Chr5:11692627-11692646 None:intergenic 50.0%
ACGCTAACACCGTCCTCCTT+CGG + Chr5:11691074-11691093 None:intergenic 55.0%
CCGGTGTAGGAAGCAGACTT+TGG + Chr5:11692211-11692230 None:intergenic 55.0%
CGATGAAGAAGCCGAAGCCT+TGG - Chr5:11692295-11692314 MsG0580024923.01.T01:CDS 55.0%
GCACCATTATCGCCTGGTTC+AGG + Chr5:11690876-11690895 None:intergenic 55.0%
GGCTTCGGCTTCTTCATCGA+TGG + Chr5:11692294-11692313 None:intergenic 55.0%
! AAGGAGGACGGTGTTAGCGT+CGG - Chr5:11691074-11691093 MsG0580024923.01.T01:CDS 55.0%
!! CGTGAGCTTTGGGGAGGTTT+GGG - Chr5:11692323-11692342 MsG0580024923.01.T01:CDS 55.0%
!! GTTGATCGTGAGCTTTGGGG+AGG - Chr5:11692317-11692336 MsG0580024923.01.T01:CDS 55.0%
!! TCGTGAGCTTTGGGGAGGTT+TGG - Chr5:11692322-11692341 MsG0580024923.01.T01:CDS 55.0%
CAAAACGCCGGCGGAGAAAC+CGG - Chr5:11691043-11691062 MsG0580024923.01.T01:CDS 60.0%
GAAACCGGCGATGCCGAAGG+AGG - Chr5:11691058-11691077 MsG0580024923.01.T01:CDS 65.0%
GGAGAAACCGGCGATGCCGA+AGG - Chr5:11691055-11691074 MsG0580024923.01.T01:CDS 65.0%
CCGGCGATGCCGAAGGAGGA+CGG - Chr5:11691062-11691081 MsG0580024923.01.T01:CDS 70.0%
CCGTCCTCCTTCGGCATCGC+CGG + Chr5:11691065-11691084 None:intergenic 70.0%
!! GGCATCGCCGGTTTCTCCGC+CGG + Chr5:11691053-11691072 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 11690672 11692664 11690672 ID=MsG0580024923.01;Name=MsG0580024923.01
Chr5 mRNA 11690672 11692664 11690672 ID=MsG0580024923.01.T01;Parent=MsG0580024923.01;Name=MsG0580024923.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|369
Chr5 exon 11692026 11692664 11692026 ID=MsG0580024923.01.T01:exon:19836;Parent=MsG0580024923.01.T01
Chr5 exon 11690672 11691142 11690672 ID=MsG0580024923.01.T01:exon:19835;Parent=MsG0580024923.01.T01
Chr5 CDS 11692026 11692664 11692026 ID=MsG0580024923.01.T01:cds;Parent=MsG0580024923.01.T01
Chr5 CDS 11690672 11691142 11690672 ID=MsG0580024923.01.T01:cds;Parent=MsG0580024923.01.T01
Gene Sequence

>MsG0580024923.01.T01

ATGTTGTTCCTTTTCATTTTCATTTTCATTCTCTTCTTTCAATTTCAATTTTGTTCTTCTATGAATTTATCATCAATGGCGTTTAAGAGAACGCTTGCACAACGGTTATTCAATATAACCAAAATCTCATCACAAAATCTCACGAATTGTCGCATTTCATCTTCCTCCGTCAGTGTTTCAAAATCCGAATCTGACATTTCACCTGAACCAGGCGATAATGGTGCATTCAAGAGATTCATTCACAAACGAACCGGTTTTGAACCGAAACAACAAACCGGGTTCAAATCAGAGCTTCATCAACCAAACCTGATGGAGAAGCTGAAAACAATGGACAATGGTAGGAATCGTATTCGGTTGGATGGATTGATCATCAAAACGCCGGCGGAGAAACCGGCGATGCCGAAGGAGGACGGTGTTAGCGTCGGAGATGTGAAGAAATTGTTGAAGGTGGCGCAATTAGAGATGGTGAAATCAAGGCTTAAAGAATCATCAAAGAGTTGTGTAACGGTTTCGGAATTGATTCGAATTTGTTCTGAATATTGTTCCGATCATGATCAAGCGGTTAAGATTGTGAAGATGCTTGATGATTCTGCGGCTGTGATTATTCTTGGAGATGTTGTGTTTCTTAGACCTGAACAGGTAGCCAAAACACTCCAAAGTCTGCTTCCTACACCGGGAATAAAGGTATCAGATTCAGTAAGAAAAGAATATGAAGAAATGGAGAAAAAGAAGTTGGCCATCGATGAAGAAGCCGAAGCCTTGGTTGATCGTGAGCTTTGGGGAGGTTTGGGTTTCATTATGGTGAAAACAGCAGTATTAATGAGACTCACCTTTTGGGAGCTTACTTGGGATGTAATGGAACCCATTTGCTTCTATTTAACATCCATGTACTTCATGACTGGTTATACATTCTTCCTCAAGACCGGGAAAGAACCTTCTTTTAGAGGTTTTTACGAAGCTCGTTTCAGCTCGAAGCAGAAGCGCCTTATGAAGCTTCACAATTTTGACATTGAAAAGTACAATAAGCTTAGCAACGTTTGTTCTCCCAATGTTCCTCCTATGTTTGATTCCTCCACTGCTCTCACATCTGAAAATTCTTTACATCACTGA
Protein sequence

>MsG0580024923.01.T01

MLFLFIFIFILFFQFQFCSSMNLSSMAFKRTLAQRLFNITKISSQNLTNCRISSSSVSVSKSESDISPEPGDNGAFKRFIHKRTGFEPKQQTGFKSELHQPNLMEKLKTMDNGRNRIRLDGLIIKTPAEKPAMPKEDGVSVGDVKKLLKVAQLEMVKSRLKESSKSCVTVSELIRICSEYCSDHDQAVKIVKMLDDSAAVIILGDVVFLRPEQVAKTLQSLLPTPGIKVSDSVRKEYEEMEKKKLAIDEEAEALVDRELWGGLGFIMVKTAVLMRLTFWELTWDVMEPICFYLTSMYFMTGYTFFLKTGKEPSFRGFYEARFSSKQKRLMKLHNFDIEKYNKLSNVCSPNVPPMFDSSTALTSENSLHH*