Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022384.01.T01 | XP_013457030.1 | 93.827 | 324 | 18 | 1 | 1 | 322 | 1 | 324 | 0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022384.01.T01 | A0A072UNV4 | 93.827 | 324 | 18 | 1 | 1 | 322 | 1 | 324 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003993.01 | MsG0480022384.01 | 0.821720 | 3.475586e-53 | 2.850100e-50 |
| MsG0180005272.01 | MsG0480022384.01 | 0.823997 | 1.024594e-53 | 8.961840e-51 |
| MsG0480022383.01 | MsG0480022384.01 | 0.839860 | 1.230970e-57 | 1.722113e-54 |
| MsG0480022384.01 | MsG0580024923.01 | 0.873965 | 9.769680e-68 | 4.320702e-64 |
| MsG0480022384.01 | MsG0780039969.01 | 0.820848 | 5.521052e-53 | 4.418736e-50 |
| MsG0480022384.01 | MsG0880046176.01 | 0.805318 | 1.414750e-49 | 7.461638e-47 |
| MsG0280008597.01 | MsG0480022384.01 | 0.801857 | 7.388049e-49 | 3.565964e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022384.01.T01 | MTR_4g088770 | 93.827 | 324 | 18 | 1 | 1 | 322 | 1 | 324 | 0.0 | 635 |
| MsG0480022384.01.T01 | MTR_4g088760 | 84.568 | 324 | 46 | 3 | 1 | 322 | 55 | 376 | 0.0 | 574 |
| MsG0480022384.01.T01 | MTR_2g013780 | 56.615 | 325 | 130 | 6 | 1 | 322 | 1 | 317 | 4.71e-126 | 363 |
| MsG0480022384.01.T01 | MTR_2g013880 | 48.428 | 318 | 155 | 4 | 6 | 322 | 10 | 319 | 1.22e-107 | 317 |
| MsG0480022384.01.T01 | MTR_4g078310 | 53.719 | 242 | 101 | 6 | 83 | 322 | 58 | 290 | 7.97e-85 | 257 |
| MsG0480022384.01.T01 | MTR_5g008720 | 35.500 | 200 | 124 | 3 | 91 | 288 | 44 | 240 | 4.19e-43 | 149 |
| MsG0480022384.01.T01 | MTR_7g083080 | 34.641 | 153 | 98 | 2 | 145 | 296 | 129 | 280 | 1.74e-32 | 123 |
| MsG0480022384.01.T01 | MTR_4g132963 | 37.589 | 141 | 81 | 2 | 138 | 278 | 107 | 240 | 2.66e-31 | 119 |
| MsG0480022384.01.T01 | MTR_4g132940 | 37.589 | 141 | 81 | 2 | 138 | 278 | 107 | 240 | 2.66e-31 | 119 |
| MsG0480022384.01.T01 | MTR_1g041155 | 37.008 | 127 | 74 | 2 | 147 | 273 | 153 | 273 | 5.37e-30 | 117 |
| MsG0480022384.01.T01 | MTR_8g012240 | 36.296 | 135 | 85 | 1 | 145 | 278 | 129 | 263 | 5.87e-30 | 116 |
| MsG0480022384.01.T01 | MTR_4g132970 | 34.177 | 158 | 96 | 2 | 121 | 278 | 112 | 261 | 6.37e-30 | 115 |
| MsG0480022384.01.T01 | MTR_2g025520 | 34.641 | 153 | 91 | 3 | 147 | 296 | 134 | 280 | 1.56e-27 | 109 |
| MsG0480022384.01.T01 | MTR_1g070970 | 28.910 | 211 | 118 | 6 | 114 | 308 | 145 | 339 | 1.60e-27 | 110 |
| MsG0480022384.01.T01 | MTR_7g053310 | 36.765 | 136 | 84 | 2 | 145 | 279 | 118 | 252 | 4.30e-27 | 108 |
| MsG0480022384.01.T01 | MTR_7g095960 | 33.333 | 165 | 95 | 3 | 114 | 278 | 136 | 285 | 5.99e-27 | 108 |
| MsG0480022384.01.T01 | MTR_1g076500 | 36.220 | 127 | 75 | 1 | 145 | 271 | 173 | 293 | 7.83e-27 | 108 |
| MsG0480022384.01.T01 | MTR_8g093440 | 33.871 | 124 | 81 | 1 | 149 | 271 | 22 | 145 | 3.90e-26 | 103 |
| MsG0480022384.01.T01 | MTR_8g093440 | 33.871 | 124 | 81 | 1 | 149 | 271 | 84 | 207 | 1.01e-25 | 103 |
| MsG0480022384.01.T01 | MTR_5g008720 | 30.081 | 123 | 83 | 2 | 91 | 213 | 44 | 163 | 2.85e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022384.01.T01 | AT4G32480 | 47.080 | 274 | 124 | 6 | 36 | 308 | 21 | 274 | 5.24e-82 | 250 |
| MsG0480022384.01.T01 | AT2G20670 | 47.748 | 222 | 112 | 3 | 89 | 308 | 61 | 280 | 1.63e-73 | 229 |
| MsG0480022384.01.T01 | AT3G07350 | 40.909 | 132 | 78 | 0 | 147 | 278 | 135 | 266 | 9.53e-38 | 136 |
| MsG0480022384.01.T01 | AT3G25240 | 31.466 | 232 | 147 | 5 | 68 | 291 | 30 | 257 | 1.38e-32 | 122 |
| MsG0480022384.01.T01 | AT4G14620 | 39.062 | 128 | 72 | 1 | 151 | 278 | 147 | 268 | 1.39e-32 | 124 |
| MsG0480022384.01.T01 | AT2G38820 | 34.783 | 161 | 89 | 5 | 111 | 271 | 133 | 277 | 8.33e-31 | 118 |
| MsG0480022384.01.T01 | AT3G22970 | 37.879 | 132 | 75 | 2 | 148 | 278 | 57 | 182 | 3.18e-30 | 115 |
| MsG0480022384.01.T01 | AT2G39650 | 28.723 | 188 | 126 | 2 | 90 | 277 | 61 | 240 | 4.27e-30 | 116 |
| MsG0480022384.01.T01 | AT2G39650 | 30.220 | 182 | 119 | 2 | 96 | 277 | 5 | 178 | 5.07e-30 | 114 |
| MsG0480022384.01.T01 | AT3G22970 | 38.462 | 130 | 73 | 2 | 148 | 276 | 168 | 291 | 5.92e-29 | 114 |
| MsG0480022384.01.T01 | AT3G54550 | 30.769 | 143 | 89 | 2 | 148 | 286 | 145 | 281 | 3.94e-25 | 102 |
| MsG0480022384.01.T01 | AT1G62420 | 31.655 | 139 | 88 | 2 | 149 | 285 | 110 | 243 | 3.59e-24 | 100 |
| MsG0480022384.01.T01 | AT1G12030 | 32.061 | 131 | 82 | 2 | 149 | 278 | 112 | 236 | 6.86e-23 | 96.7 |
| MsG0480022384.01.T01 | AT1G77160 | 29.412 | 136 | 84 | 2 | 148 | 271 | 26 | 161 | 5.66e-20 | 87.0 |
| MsG0480022384.01.T01 | AT1G77145 | 29.167 | 144 | 90 | 2 | 148 | 279 | 76 | 219 | 8.04e-20 | 87.8 |
| MsG0480022384.01.T01 | AT1G77160 | 29.412 | 136 | 84 | 2 | 148 | 271 | 81 | 216 | 1.39e-19 | 87.0 |
| MsG0480022384.01.T01 | AT1G77145 | 32.710 | 107 | 68 | 1 | 177 | 279 | 56 | 162 | 3.23e-15 | 73.6 |
Find 58 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGAGAAAGGAGATATT+AGG | 0.188794 | 4:-71898498 | MsG0480022384.01.T01:CDS |
| AGTGGTTAGGTCCATTTAAA+AGG | 0.261572 | 4:-71898261 | MsG0480022384.01.T01:CDS |
| TTCAACTAATTCACTTTCAT+TGG | 0.273663 | 4:-71898233 | MsG0480022384.01.T01:CDS |
| GTGCAATTTGTAATACTAAA+TGG | 0.278765 | 4:-71899084 | MsG0480022384.01.T01:CDS |
| GATGCCTTTGGCTTCTGCTT+TGG | 0.309443 | 4:+71898187 | None:intergenic |
| GTGTATATCTTATTTGATCT+TGG | 0.329968 | 4:+71897942 | None:intergenic |
| CAACAGAACTTGTTCTATAT+AGG | 0.334794 | 4:+71899263 | None:intergenic |
| GATGATTGTGATGTGGGTTT+TGG | 0.352300 | 4:-71899557 | MsG0480022384.01.T01:CDS |
| CAAAGAGAAAGGAGATATTA+GGG | 0.363806 | 4:-71898497 | MsG0480022384.01.T01:CDS |
| TGTATATCTTATTTGATCTT+GGG | 0.364553 | 4:+71897943 | None:intergenic |
| TTATGTGTATGGCAGCTAAA+AGG | 0.369972 | 4:-71898345 | MsG0480022384.01.T01:CDS |
| ATAGCAGTACAATGCATATC+AGG | 0.379730 | 4:+71898133 | None:intergenic |
| ACAGTTAACATCGATGCCTT+TGG | 0.407087 | 4:+71898175 | None:intergenic |
| ACTTGTCTCATAAAACAGTT+TGG | 0.416082 | 4:+71899139 | None:intergenic |
| TTTCTTGATGATTGTGATGT+GGG | 0.416102 | 4:-71899563 | MsG0480022384.01.T01:CDS |
| TCAACTAATTCACTTTCATT+GGG | 0.420472 | 4:-71898232 | MsG0480022384.01.T01:CDS |
| CATAATCAAGATTATGTGTA+TGG | 0.427742 | 4:-71898356 | MsG0480022384.01.T01:CDS |
| GTCAAAACATAACATAATCA+TGG | 0.437841 | 4:-71899702 | MsG0480022384.01.T01:exon |
| CCTAGTCACTCGTGCTAAAG+AGG | 0.444536 | 4:+71899673 | None:intergenic |
| AAAACAGTTTGGACATGATC+TGG | 0.459749 | 4:+71899150 | None:intergenic |
| TTACCTGCAAAAGCTGAAGT+TGG | 0.467608 | 4:+71899402 | None:intergenic |
| CTTTCGAGCACAATTTGAGA+TGG | 0.476688 | 4:-71898458 | MsG0480022384.01.T01:CDS |
| GGCAGCTAAAAGGTGTTTGA+AGG | 0.493144 | 4:-71898335 | MsG0480022384.01.T01:CDS |
| TCTAACCAGCTTCAAAATGC+TGG | 0.495680 | 4:-71899115 | MsG0480022384.01.T01:CDS |
| CAATATGCAGACACAAATCT+TGG | 0.504940 | 4:-71899602 | MsG0480022384.01.T01:CDS |
| GTTTCATCATGATAATCATA+TGG | 0.507505 | 4:-71899513 | MsG0480022384.01.T01:CDS |
| AGTTCACATAATCTTCCATC+AGG | 0.512882 | 4:-71899058 | MsG0480022384.01.T01:intron |
| TTTCGAGCACAATTTGAGAT+GGG | 0.513578 | 4:-71898457 | MsG0480022384.01.T01:CDS |
| GAATTCAAAGCAGGTTCAAA+CGG | 0.514136 | 4:+71897965 | None:intergenic |
| GTTCTGTTGAAATAAGCATA+AGG | 0.516383 | 4:-71899249 | MsG0480022384.01.T01:CDS |
| TACATGCAAGCTAAGTGGTT+AGG | 0.517313 | 4:-71898274 | MsG0480022384.01.T01:CDS |
| GTGACTAGGTATTTGCCAGC+TGG | 0.519709 | 4:-71899659 | MsG0480022384.01.T01:CDS |
| TCATGATAATCATATGGAGT+TGG | 0.523947 | 4:-71899507 | MsG0480022384.01.T01:CDS |
| TGATCTTGGGAATTCAAAGC+AGG | 0.531761 | 4:+71897956 | None:intergenic |
| CCTCTTTAGCACGAGTGACT+AGG | 0.537423 | 4:-71899673 | MsG0480022384.01.T01:CDS |
| AATTATTTATAGCAATACAT+AGG | 0.537770 | 4:-71897988 | MsG0480022384.01.T01:three_prime_UTR |
| TGAGATGGGAAAAGCAAGTG+AGG | 0.544475 | 4:-71898443 | MsG0480022384.01.T01:CDS |
| AAACTCCCTGAGGTTTATGT+AGG | 0.545128 | 4:-71898400 | MsG0480022384.01.T01:CDS |
| CATAATACAAGCAAAGAGAA+AGG | 0.545468 | 4:-71898508 | MsG0480022384.01.T01:CDS |
| TGCAACGAAAGAAGCAATTG+AGG | 0.553944 | 4:-71899224 | MsG0480022384.01.T01:CDS |
| TCAAAACATAACATAATCAT+GGG | 0.557183 | 4:-71899701 | MsG0480022384.01.T01:exon |
| ATAAATACATGCAAGCTAAG+TGG | 0.576303 | 4:-71898279 | MsG0480022384.01.T01:CDS |
| TCTACTGAGAGGGTTAAAGA+AGG | 0.607479 | 4:-71899461 | MsG0480022384.01.T01:CDS |
| CTCAAATGTTGTGTTGTGTG+TGG | 0.608403 | 4:+71899729 | None:intergenic |
| ACAAAATGCACATGGGACCA+TGG | 0.611544 | 4:-71898309 | MsG0480022384.01.T01:CDS |
| TAATCCAAAGCAGAAGCCAA+AGG | 0.630360 | 4:-71898191 | MsG0480022384.01.T01:CDS |
| TAAAGAAGGTTGTAACAATG+AGG | 0.631226 | 4:-71899447 | MsG0480022384.01.T01:CDS |
| GTTGGATATTGAAGATGATG+AGG | 0.631925 | 4:-71899489 | MsG0480022384.01.T01:CDS |
| CAGGGAGTTTCCTCACAAGA+CGG | 0.633524 | 4:+71898413 | None:intergenic |
| GAAGGAAAACAAAATGCACA+TGG | 0.638628 | 4:-71898317 | MsG0480022384.01.T01:CDS |
| ATGAGGATAAATCTACTGAG+AGG | 0.643770 | 4:-71899472 | MsG0480022384.01.T01:CDS |
| TGAGGATAAATCTACTGAGA+GGG | 0.644963 | 4:-71899471 | MsG0480022384.01.T01:CDS |
| AATTCCCTACGAAAACCAGC+TGG | 0.645424 | 4:+71899644 | None:intergenic |
| AGGATTATAACCGTCTTGTG+AGG | 0.653130 | 4:-71898423 | MsG0480022384.01.T01:CDS |
| TGTAGTTGTAGTAGACAGAG+TGG | 0.660897 | 4:-71899178 | MsG0480022384.01.T01:CDS |
| AAAGGCATCGATGTTAACTG+TGG | 0.685100 | 4:-71898173 | MsG0480022384.01.T01:CDS |
| AAGGAAAACAAAATGCACAT+GGG | 0.713631 | 4:-71898316 | MsG0480022384.01.T01:CDS |
| TCTTGTGAGGAAACTCCCTG+AGG | 0.737856 | 4:-71898410 | MsG0480022384.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTAGTGATTTAAA+AGG | + | Chr4:71898841-71898860 | None:intergenic | 10.0% |
| !!! | AATATTTTAGTGATTTAAAA+GGG | + | Chr4:71898840-71898859 | None:intergenic | 10.0% |
| !!! | ATATTGTTTTTTTTTTTGAA+AGG | - | Chr4:71899737-71899756 | MsG0480022384.01.T01:five_prime_UTR | 10.0% |
| !! | AAATTGAATGAATGTTTAAA+GGG | + | Chr4:71898653-71898672 | None:intergenic | 15.0% |
| !! | AATTATTTATAGCAATACAT+AGG | - | Chr4:71899668-71899687 | MsG0480022384.01.T01:CDS | 15.0% |
| !! | ACAGGATTATTAAAAAATTA+AGG | - | Chr4:71898953-71898972 | MsG0480022384.01.T01:intron | 15.0% |
| !! | TAAATTGAATGAATGTTTAA+AGG | + | Chr4:71898654-71898673 | None:intergenic | 15.0% |
| !!! | TATTAAAAAATTAAGGTGTT+AGG | - | Chr4:71898960-71898979 | MsG0480022384.01.T01:intron | 15.0% |
| !!! | TATTTTCTTAATCAATTTTG+AGG | - | Chr4:71898319-71898338 | MsG0480022384.01.T01:CDS | 15.0% |
| !!! | TGATACTATTTTTTGTTTTT+TGG | - | Chr4:71899561-71899580 | MsG0480022384.01.T01:CDS | 15.0% |
| !! | AATTAAATGAAATTACCTGA+TGG | + | Chr4:71898616-71898635 | None:intergenic | 20.0% |
| !! | CATATAGACTATGAATAAAT+TGG | + | Chr4:71898284-71898303 | None:intergenic | 20.0% |
| !! | TAATACATTCTTGTCAATAT+AGG | + | Chr4:71898897-71898916 | None:intergenic | 20.0% |
| !! | TATATTGACAAGAATGTATT+AGG | - | Chr4:71898896-71898915 | MsG0480022384.01.T01:intron | 20.0% |
| !! | TCAAAACATAACATAATCAT+GGG | - | Chr4:71897955-71897974 | MsG0480022384.01.T01:three_prime_UTR | 20.0% |
| !!! | TGTATATCTTATTTGATCTT+GGG | + | Chr4:71899716-71899735 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTCTAGTGAGAA+AGG | - | Chr4:71899613-71899632 | MsG0480022384.01.T01:CDS | 20.0% |
| !!! | TTTTTTGTTTTTTGGTAGAT+AGG | - | Chr4:71899569-71899588 | MsG0480022384.01.T01:CDS | 20.0% |
| ! | AAGGTCAAAATAGATCATAT+GGG | + | Chr4:71898812-71898831 | None:intergenic | 25.0% |
| ! | ACAAGAATGTATTAGGTATT+AGG | - | Chr4:71898903-71898922 | MsG0480022384.01.T01:intron | 25.0% |
| ! | ATATGTGATCATAACTATAC+AGG | - | Chr4:71899100-71899119 | MsG0480022384.01.T01:CDS | 25.0% |
| ! | CATAATCAAGATTATGTGTA+TGG | - | Chr4:71899300-71899319 | MsG0480022384.01.T01:intron | 25.0% |
| ! | GTCAAAACATAACATAATCA+TGG | - | Chr4:71897954-71897973 | MsG0480022384.01.T01:three_prime_UTR | 25.0% |
| ! | GTGCAATTTGTAATACTAAA+TGG | - | Chr4:71898572-71898591 | MsG0480022384.01.T01:intron | 25.0% |
| ! | GTTTCATCATGATAATCATA+TGG | - | Chr4:71898143-71898162 | MsG0480022384.01.T01:CDS | 25.0% |
| ! | TAAGGTCAAAATAGATCATA+TGG | + | Chr4:71898813-71898832 | None:intergenic | 25.0% |
| ! | TATGTGATCATAACTATACA+GGG | - | Chr4:71899101-71899120 | MsG0480022384.01.T01:CDS | 25.0% |
| ! | TCAACTAATTCACTTTCATT+GGG | - | Chr4:71899424-71899443 | MsG0480022384.01.T01:CDS | 25.0% |
| ! | TTCAACTAATTCACTTTCAT+TGG | - | Chr4:71899423-71899442 | MsG0480022384.01.T01:CDS | 25.0% |
| !! | ATGAGGAGAATAGAAATTTT+TGG | - | Chr4:71898226-71898245 | MsG0480022384.01.T01:CDS | 25.0% |
| !! | ATGTATTTATGTTTTCTCCA+TGG | + | Chr4:71899367-71899386 | None:intergenic | 25.0% |
| !! | GTGTATATCTTATTTGATCT+TGG | + | Chr4:71899717-71899736 | None:intergenic | 25.0% |
| !! | TGAGGAGAATAGAAATTTTT+GGG | - | Chr4:71898227-71898246 | MsG0480022384.01.T01:CDS | 25.0% |
| AAGGAAAACAAAATGCACAT+GGG | - | Chr4:71899340-71899359 | MsG0480022384.01.T01:intron | 30.0% | |
| ACTTGTCTCATAAAACAGTT+TGG | + | Chr4:71898520-71898539 | None:intergenic | 30.0% | |
| ATAAATACATGCAAGCTAAG+TGG | - | Chr4:71899377-71899396 | MsG0480022384.01.T01:intron | 30.0% | |
| ATGTGATCATAACTATACAG+GGG | - | Chr4:71899102-71899121 | MsG0480022384.01.T01:CDS | 30.0% | |
| CAAAGAGAAAGGAGATATTA+GGG | - | Chr4:71899159-71899178 | MsG0480022384.01.T01:CDS | 30.0% | |
| CATAATACAAGCAAAGAGAA+AGG | - | Chr4:71899148-71899167 | MsG0480022384.01.T01:CDS | 30.0% | |
| GTGATTTAAAAGGGACTTTA+AGG | + | Chr4:71898831-71898850 | None:intergenic | 30.0% | |
| GTTCTGTTGAAATAAGCATA+AGG | - | Chr4:71898407-71898426 | MsG0480022384.01.T01:CDS | 30.0% | |
| GTTTGTATTTGAAAAGCAAC+AGG | - | Chr4:71898935-71898954 | MsG0480022384.01.T01:intron | 30.0% | |
| TAAAGAAGGTTGTAACAATG+AGG | - | Chr4:71898209-71898228 | MsG0480022384.01.T01:CDS | 30.0% | |
| TCATGATAATCATATGGAGT+TGG | - | Chr4:71898149-71898168 | MsG0480022384.01.T01:CDS | 30.0% | |
| ! | CAACAGAACTTGTTCTATAT+AGG | + | Chr4:71898396-71898415 | None:intergenic | 30.0% |
| ! | TTGTGTTGTGTTGACAAAAT+TGG | - | Chr4:71898349-71898368 | MsG0480022384.01.T01:CDS | 30.0% |
| ! | TTTCTTGATGATTGTGATGT+GGG | - | Chr4:71898093-71898112 | MsG0480022384.01.T01:three_prime_UTR | 30.0% |
| !! | GTTGAAGTGTTCCTTTTAAA+TGG | + | Chr4:71899409-71899428 | None:intergenic | 30.0% |
| !! | TTTTCTTGATGATTGTGATG+TGG | - | Chr4:71898092-71898111 | MsG0480022384.01.T01:three_prime_UTR | 30.0% |
| AAAACAGTTTGGACATGATC+TGG | + | Chr4:71898509-71898528 | None:intergenic | 35.0% | |
| AGTGGTTAGGTCCATTTAAA+AGG | - | Chr4:71899395-71899414 | MsG0480022384.01.T01:intron | 35.0% | |
| AGTTCACATAATCTTCCATC+AGG | - | Chr4:71898598-71898617 | MsG0480022384.01.T01:intron | 35.0% | |
| ATAGCAGTACAATGCATATC+AGG | + | Chr4:71899526-71899545 | None:intergenic | 35.0% | |
| ATGAGGATAAATCTACTGAG+AGG | - | Chr4:71898184-71898203 | MsG0480022384.01.T01:CDS | 35.0% | |
| CAATATGCAGACACAAATCT+TGG | - | Chr4:71898054-71898073 | MsG0480022384.01.T01:three_prime_UTR | 35.0% | |
| CTGATTAGTGCAACAGAAAA+AGG | + | Chr4:71898866-71898885 | None:intergenic | 35.0% | |
| GAAGGAAAACAAAATGCACA+TGG | - | Chr4:71899339-71899358 | MsG0480022384.01.T01:intron | 35.0% | |
| GAATTCAAAGCAGGTTCAAA+CGG | + | Chr4:71899694-71899713 | None:intergenic | 35.0% | |
| GCAAAGAGAAAGGAGATATT+AGG | - | Chr4:71899158-71899177 | MsG0480022384.01.T01:CDS | 35.0% | |
| GTTGGATATTGAAGATGATG+AGG | - | Chr4:71898167-71898186 | MsG0480022384.01.T01:CDS | 35.0% | |
| TGAGGATAAATCTACTGAGA+GGG | - | Chr4:71898185-71898204 | MsG0480022384.01.T01:CDS | 35.0% | |
| TTATGTGTATGGCAGCTAAA+AGG | - | Chr4:71899311-71899330 | MsG0480022384.01.T01:intron | 35.0% | |
| ! | CTTTTCCTACATAAACCTCA+GGG | + | Chr4:71899264-71899283 | None:intergenic | 35.0% |
| ! | CTTTTTCTGTTGCACTAATC+AGG | - | Chr4:71898864-71898883 | MsG0480022384.01.T01:intron | 35.0% |
| ! | TACAGGGGAACATACATTTT+TGG | - | Chr4:71899117-71899136 | MsG0480022384.01.T01:CDS | 35.0% |
| ! | TTTCGAGCACAATTTGAGAT+GGG | - | Chr4:71899199-71899218 | MsG0480022384.01.T01:CDS | 35.0% |
| !!! | TAAAACCAGCATTTTGAAGC+TGG | + | Chr4:71898549-71898568 | None:intergenic | 35.0% |
| AAACTCCCTGAGGTTTATGT+AGG | - | Chr4:71899256-71899275 | MsG0480022384.01.T01:CDS | 40.0% | |
| ACAGTTAACATCGATGCCTT+TGG | + | Chr4:71899484-71899503 | None:intergenic | 40.0% | |
| AGGATTATAACCGTCTTGTG+AGG | - | Chr4:71899233-71899252 | MsG0480022384.01.T01:CDS | 40.0% | |
| CTCAAATGTTGTGTTGTGTG+TGG | + | Chr4:71897930-71897949 | None:intergenic | 40.0% | |
| CTTTCGAGCACAATTTGAGA+TGG | - | Chr4:71899198-71899217 | MsG0480022384.01.T01:CDS | 40.0% | |
| TAATCCAAAGCAGAAGCCAA+AGG | - | Chr4:71899465-71899484 | MsG0480022384.01.T01:CDS | 40.0% | |
| TACATGCAAGCTAAGTGGTT+AGG | - | Chr4:71899382-71899401 | MsG0480022384.01.T01:intron | 40.0% | |
| TCTAACCAGCTTCAAAATGC+TGG | - | Chr4:71898541-71898560 | MsG0480022384.01.T01:intron | 40.0% | |
| TCTACTGAGAGGGTTAAAGA+AGG | - | Chr4:71898195-71898214 | MsG0480022384.01.T01:CDS | 40.0% | |
| TGATCTTGGGAATTCAAAGC+AGG | + | Chr4:71899703-71899722 | None:intergenic | 40.0% | |
| TGCAACGAAAGAAGCAATTG+AGG | - | Chr4:71898432-71898451 | MsG0480022384.01.T01:CDS | 40.0% | |
| TGTAGTTGTAGTAGACAGAG+TGG | - | Chr4:71898478-71898497 | MsG0480022384.01.T01:CDS | 40.0% | |
| TTACCTGCAAAAGCTGAAGT+TGG | + | Chr4:71898257-71898276 | None:intergenic | 40.0% | |
| ! | GATGATTGTGATGTGGGTTT+TGG | - | Chr4:71898099-71898118 | MsG0480022384.01.T01:three_prime_UTR | 40.0% |
| ! | GCTTTTCCTACATAAACCTC+AGG | + | Chr4:71899265-71899284 | None:intergenic | 40.0% |
| ! | GTTTTCGTAGGGAATTGTCT+AGG | - | Chr4:71898019-71898038 | MsG0480022384.01.T01:three_prime_UTR | 40.0% |
| !! | AAAGGCATCGATGTTAACTG+TGG | - | Chr4:71899483-71899502 | MsG0480022384.01.T01:CDS | 40.0% |
| AATTCCCTACGAAAACCAGC+TGG | + | Chr4:71898015-71898034 | None:intergenic | 45.0% | |
| ACAAAATGCACATGGGACCA+TGG | - | Chr4:71899347-71899366 | MsG0480022384.01.T01:intron | 45.0% | |
| TGAGATGGGAAAAGCAAGTG+AGG | - | Chr4:71899213-71899232 | MsG0480022384.01.T01:CDS | 45.0% | |
| ! | CAACCAACTTCAGCTTTTGC+AGG | - | Chr4:71898251-71898270 | MsG0480022384.01.T01:CDS | 45.0% |
| !! | GGCAGCTAAAAGGTGTTTGA+AGG | - | Chr4:71899321-71899340 | MsG0480022384.01.T01:intron | 45.0% |
| !!! | ATTTGCCAGCTGGTTTTCGT+AGG | - | Chr4:71898007-71898026 | MsG0480022384.01.T01:three_prime_UTR | 45.0% |
| !!! | TTTGCCAGCTGGTTTTCGTA+GGG | - | Chr4:71898008-71898027 | MsG0480022384.01.T01:three_prime_UTR | 45.0% |
| CAGGGAGTTTCCTCACAAGA+CGG | + | Chr4:71899246-71899265 | None:intergenic | 50.0% | |
| CCTAGTCACTCGTGCTAAAG+AGG | + | Chr4:71897986-71898005 | None:intergenic | 50.0% | |
| CCTCTTTAGCACGAGTGACT+AGG | - | Chr4:71897983-71898002 | MsG0480022384.01.T01:three_prime_UTR | 50.0% | |
| GTGACTAGGTATTTGCCAGC+TGG | - | Chr4:71897997-71898016 | MsG0480022384.01.T01:three_prime_UTR | 50.0% | |
| TCTTGTGAGGAAACTCCCTG+AGG | - | Chr4:71899246-71899265 | MsG0480022384.01.T01:CDS | 50.0% | |
| ! | GATGCCTTTGGCTTCTGCTT+TGG | + | Chr4:71899472-71899491 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 71897896 | 71899782 | 71897896 | ID=MsG0480022384.01;Name=MsG0480022384.01 |
| Chr4 | mRNA | 71897896 | 71899782 | 71897896 | ID=MsG0480022384.01.T01;Parent=MsG0480022384.01;Name=MsG0480022384.01.T01;_AED=0.45;_eAED=0.45;_QI=77|1|1|1|1|1|3|224|322 |
| Chr4 | exon | 71897896 | 71898556 | 71897896 | ID=MsG0480022384.01.T01:exon:10057;Parent=MsG0480022384.01.T01 |
| Chr4 | exon | 71899059 | 71899290 | 71899059 | ID=MsG0480022384.01.T01:exon:10056;Parent=MsG0480022384.01.T01 |
| Chr4 | exon | 71899406 | 71899782 | 71899406 | ID=MsG0480022384.01.T01:exon:10055;Parent=MsG0480022384.01.T01 |
| Chr4 | five_prime_UTR | 71899706 | 71899782 | 71899706 | ID=MsG0480022384.01.T01:five_prime_utr;Parent=MsG0480022384.01.T01 |
| Chr4 | CDS | 71899406 | 71899705 | 71899406 | ID=MsG0480022384.01.T01:cds;Parent=MsG0480022384.01.T01 |
| Chr4 | CDS | 71899059 | 71899290 | 71899059 | ID=MsG0480022384.01.T01:cds;Parent=MsG0480022384.01.T01 |
| Chr4 | CDS | 71898120 | 71898556 | 71898120 | ID=MsG0480022384.01.T01:cds;Parent=MsG0480022384.01.T01 |
| Chr4 | three_prime_UTR | 71897896 | 71898119 | 71897896 | ID=MsG0480022384.01.T01:three_prime_utr;Parent=MsG0480022384.01.T01 |
| Gene Sequence |
| Protein sequence |
