AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024979.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024979.01.T01 MTR_5g020600 99.293 566 4 0 30 595 1 566 0.0 1171
MsG0580024979.01.T01 MTR_5g020620 83.304 563 91 3 34 595 1 561 0.0 991
MsG0580024979.01.T01 MTR_5g069680 60.870 552 215 1 44 595 8 558 0.0 731
MsG0580024979.01.T01 MTR_3g462760 63.197 538 196 2 58 595 21 556 0.0 729
MsG0580024979.01.T01 MTR_4g015120 60.862 557 215 2 41 595 2 557 0.0 704
MsG0580024979.01.T01 MTR_7g062310 58.621 551 212 7 60 595 44 593 0.0 670
MsG0580024979.01.T01 MTR_5g081810 57.250 531 219 3 68 595 4 529 0.0 662
MsG0580024979.01.T01 MTR_7g058690 54.750 579 243 7 35 595 3 580 0.0 656
MsG0580024979.01.T01 MTR_7g458880 55.155 582 243 8 30 595 1 580 0.0 655
MsG0580024979.01.T01 MTR_7g060460 55.670 582 236 8 35 595 1 581 0.0 654
MsG0580024979.01.T01 MTR_7g062250 53.633 578 252 8 33 595 2 578 0.0 644
MsG0580024979.01.T01 MTR_4g064530 54.019 535 233 6 60 583 41 573 0.0 611
MsG0580024979.01.T01 MTR_5g083360 49.481 578 265 7 34 595 1 567 0.0 595
MsG0580024979.01.T01 MTR_5g073210 51.943 566 252 8 42 595 3 560 0.0 585
MsG0580024979.01.T01 MTR_4g064530 53.725 510 221 7 60 556 41 548 0.0 569
MsG0580024979.01.T01 MTR_2g008330 46.606 545 282 5 60 595 35 579 0.0 530
MsG0580024979.01.T01 MTR_3g071890 46.528 576 271 10 34 580 1 568 1.17e-180 523
MsG0580024979.01.T01 MTR_4g019225 45.273 550 283 5 62 595 25 572 1.55e-176 512
MsG0580024979.01.T01 MTR_3g101635 47.197 553 277 7 35 578 3 549 4.62e-176 511
MsG0580024979.01.T01 MTR_3g101640 47.120 573 289 10 35 595 1 571 1.26e-175 509
MsG0580024979.01.T01 MTR_8g027375 42.734 578 312 7 30 595 1 571 2.31e-172 501
MsG0580024979.01.T01 MTR_7g065980 44.484 562 292 10 51 595 13 571 6.64e-166 485
MsG0580024979.01.T01 MTR_7g065970 44.718 568 295 7 43 595 7 570 1.45e-159 469
MsG0580024979.01.T01 MTR_5g081790 50.370 270 125 3 287 553 157 420 4.12e-86 275
MsG0580024979.01.T01 MTR_5g081790 54.321 162 65 2 50 202 9 170 5.36e-57 198
MsG0580024979.01.T01 MTR_8g091390 33.759 548 313 16 58 578 29 553 5.44e-81 266
MsG0580024979.01.T01 MTR_8g073840 66.486 185 23 3 59 242 26 172 1.70e-76 245
MsG0580024979.01.T01 MTR_3g078740 30.795 591 326 22 41 574 4 568 4.79e-63 218
MsG0580024979.01.T01 MTR_3g078700 30.716 573 341 17 41 595 1 535 1.57e-62 216
MsG0580024979.01.T01 MTR_3g078730 30.000 550 337 16 41 574 1 518 1.18e-59 208
MsG0580024979.01.T01 MTR_4g075690 29.401 568 340 18 44 595 10 532 2.57e-58 204
MsG0580024979.01.T01 MTR_4g101650 29.268 574 361 18 39 595 4 549 1.57e-57 203
MsG0580024979.01.T01 MTR_3g115050 29.550 555 335 19 56 595 20 533 1.15e-56 200
MsG0580024979.01.T01 MTR_1g026410 28.445 566 353 16 43 595 6 532 7.14e-55 195
MsG0580024979.01.T01 MTR_3g008580 27.993 543 348 17 34 560 1 516 2.97e-54 194
MsG0580024979.01.T01 MTR_1g090707 29.020 541 328 19 73 595 34 536 4.02e-54 194
MsG0580024979.01.T01 MTR_4g049390 30.059 509 303 18 59 555 23 490 1.90e-53 191
MsG0580024979.01.T01 MTR_4g075690 29.876 482 278 17 44 509 10 447 1.47e-49 178
MsG0580024979.01.T01 MTR_2g088080 31.225 506 301 17 59 555 26 493 1.69e-49 180
MsG0580024979.01.T01 MTR_4g048350 29.666 509 304 19 59 555 23 489 2.25e-49 180
MsG0580024979.01.T01 MTR_8g479390 29.515 515 299 20 58 555 26 493 2.34e-49 180
MsG0580024979.01.T01 MTR_7g051440 28.376 511 324 17 65 560 31 514 1.85e-48 178
MsG0580024979.01.T01 MTR_8g479380 28.044 542 311 20 46 561 9 497 3.72e-48 176
MsG0580024979.01.T01 MTR_5g018270 28.433 517 311 18 58 561 26 496 1.70e-46 172
MsG0580024979.01.T01 MTR_4g083210 27.846 571 355 20 44 594 6 539 2.74e-45 169
MsG0580024979.01.T01 MTR_3g083400 27.448 572 363 22 42 594 5 543 1.71e-43 164
MsG0580024979.01.T01 MTR_3g083430 27.478 575 359 23 42 594 5 543 1.81e-43 164
MsG0580024979.01.T01 MTR_3g083440 27.448 572 363 22 42 594 5 543 2.88e-43 163
MsG0580024979.01.T01 MTR_4g132320 30.206 533 305 19 42 555 10 494 4.85e-43 162
MsG0580024979.01.T01 MTR_3g083450 27.869 549 345 21 65 594 28 544 7.94e-43 162
MsG0580024979.01.T01 MTR_3g083390 27.273 572 364 22 42 594 5 543 1.70e-42 160
MsG0580024979.01.T01 MTR_2g088080 32.360 445 254 17 120 555 6 412 2.95e-41 155
MsG0580024979.01.T01 MTR_3g083410 28.113 530 330 21 84 594 10 507 5.76e-41 156
MsG0580024979.01.T01 MTR_4g083190 27.357 541 326 22 81 594 45 545 3.07e-37 145
MsG0580024979.01.T01 MTR_7g058670 58.025 81 33 1 120 199 13 93 2.30e-30 114
MsG0580024979.01.T01 MTR_4g133150 28.000 200 122 5 165 354 19 206 5.15e-14 71.6
MsG0580024979.01.T01 MTR_3g079660 38.462 91 51 2 505 595 5 90 5.25e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024979.01.T01 AT5G03260 76.311 553 128 2 43 595 8 557 0.0 902
MsG0580024979.01.T01 AT2G38080 61.360 559 211 4 39 595 3 558 0.0 733
MsG0580024979.01.T01 AT5G58910 59.325 563 224 3 38 595 5 567 0.0 706
MsG0580024979.01.T01 AT5G58910 59.325 563 223 4 38 595 5 566 0.0 702
MsG0580024979.01.T01 AT5G58910 60.755 530 196 4 71 595 1 523 0.0 674
MsG0580024979.01.T01 AT5G01190 58.528 557 221 6 44 595 7 558 0.0 662
MsG0580024979.01.T01 AT5G60020 54.688 576 239 7 41 595 3 577 0.0 654
MsG0580024979.01.T01 AT2G29130 54.577 568 237 9 46 595 9 573 0.0 641
MsG0580024979.01.T01 AT5G01190 57.630 557 212 7 44 595 7 544 0.0 640
MsG0580024979.01.T01 AT5G60020 56.410 546 216 7 71 595 1 545 0.0 638
MsG0580024979.01.T01 AT5G05390 51.246 562 257 8 46 595 9 565 0.0 595
MsG0580024979.01.T01 AT5G60020 53.558 534 226 7 41 553 3 535 0.0 586
MsG0580024979.01.T01 AT1G18140 50.180 556 257 7 60 595 26 581 0.0 586
MsG0580024979.01.T01 AT2G30210 49.740 577 268 7 34 595 1 570 0.0 582
MsG0580024979.01.T01 AT2G40370 48.187 579 268 8 44 595 7 580 0.0 564
MsG0580024979.01.T01 AT5G07130 48.705 579 270 9 34 595 1 569 0.0 556
MsG0580024979.01.T01 AT5G09360 47.425 563 280 9 42 595 14 569 0.0 548
MsG0580024979.01.T01 AT2G46570 45.191 551 281 9 58 595 27 569 5.07e-174 506
MsG0580024979.01.T01 AT3G09220 46.029 554 286 6 34 578 1 550 1.48e-173 504
MsG0580024979.01.T01 AT5G07130 50.719 487 219 8 126 595 2 484 9.75e-169 489
MsG0580024979.01.T01 AT5G07130 50.719 487 219 8 126 595 2 484 9.75e-169 489
MsG0580024979.01.T01 AT5G01040 43.881 572 299 8 38 595 3 566 1.36e-165 484
MsG0580024979.01.T01 AT5G01050 43.630 573 301 8 38 595 3 568 4.31e-165 483
MsG0580024979.01.T01 AT5G48100 42.446 556 296 11 43 585 9 553 1.90e-154 456
MsG0580024979.01.T01 AT2G46570 44.785 489 249 9 120 595 4 484 6.38e-150 441
MsG0580024979.01.T01 AT3G09220 46.903 452 231 5 136 578 2 453 4.59e-144 426
MsG0580024979.01.T01 AT4G39830 31.993 597 329 20 42 595 15 577 3.80e-83 271
MsG0580024979.01.T01 AT5G21105 32.762 583 330 21 30 574 1 559 1.81e-78 259
MsG0580024979.01.T01 AT5G21100 32.222 540 323 14 60 574 21 542 1.79e-74 248
MsG0580024979.01.T01 AT5G21105 32.206 562 319 21 30 553 1 538 1.41e-69 234
MsG0580024979.01.T01 AT4G39830 32.417 509 268 19 129 595 6 480 2.50e-62 214
MsG0580024979.01.T01 AT4G39830 32.417 509 268 19 129 595 8 482 3.03e-62 214
MsG0580024979.01.T01 AT4G39830 31.693 508 260 18 129 595 8 469 5.17e-59 204
MsG0580024979.01.T01 AT1G76160 28.520 561 349 15 46 595 11 530 3.76e-57 201
MsG0580024979.01.T01 AT1G41830 28.174 575 355 18 34 595 2 531 5.05e-57 201
MsG0580024979.01.T01 AT1G21850 28.893 533 315 17 46 561 11 496 4.52e-56 198
MsG0580024979.01.T01 AT4G25240 28.547 585 360 20 34 595 1 550 1.18e-55 198
MsG0580024979.01.T01 AT4G25240 28.547 585 360 20 34 595 1 550 1.18e-55 198
MsG0580024979.01.T01 AT4G12420 28.060 531 343 15 45 560 6 512 1.48e-55 198
MsG0580024979.01.T01 AT4G12420 28.060 531 343 15 45 560 6 512 1.48e-55 198
MsG0580024979.01.T01 AT5G51480 27.352 574 354 20 46 595 16 550 4.56e-55 197
MsG0580024979.01.T01 AT1G21860 28.676 544 328 17 30 561 1 496 8.16e-55 195
MsG0580024979.01.T01 AT5G66920 29.009 555 327 19 59 595 33 538 8.24e-55 195
MsG0580024979.01.T01 AT1G75790 29.508 549 333 15 60 593 24 533 8.77e-55 195
MsG0580024979.01.T01 AT4G28090 28.137 526 324 15 84 595 49 534 3.30e-54 193
MsG0580024979.01.T01 AT4G38420 28.269 520 321 15 51 555 17 499 2.52e-52 188
MsG0580024979.01.T01 AT4G22010 29.494 573 338 20 39 595 8 530 3.65e-52 187
MsG0580024979.01.T01 AT5G48450 29.026 503 313 17 65 555 31 501 8.65e-51 185
MsG0580024979.01.T01 AT5G48450 29.026 503 313 17 65 555 31 501 1.90e-50 184
MsG0580024979.01.T01 AT4G38420 28.088 502 309 15 51 537 17 481 3.31e-48 176
MsG0580024979.01.T01 AT5G21105 34.234 333 198 9 248 574 51 368 1.72e-44 163
MsG0580024979.01.T01 AT4G38420 27.637 474 292 14 51 509 17 454 2.64e-44 164
MsG0580024979.01.T01 AT2G23630 29.697 495 290 19 81 561 53 503 2.44e-43 163
MsG0580024979.01.T01 AT2G23630 29.697 495 290 19 81 561 48 498 2.74e-43 163
MsG0580024979.01.T01 AT4G37160 26.916 535 330 19 43 561 11 500 3.76e-42 160
MsG0580024979.01.T01 AT1G55560 27.921 505 314 21 65 555 28 496 3.11e-38 149
MsG0580024979.01.T01 AT1G55570 27.000 500 322 17 67 555 33 500 1.75e-36 144
MsG0580024979.01.T01 AT3G13400 26.931 505 319 19 65 555 29 497 2.52e-35 140
MsG0580024979.01.T01 AT3G13400 26.931 505 319 19 65 555 29 497 2.52e-35 140
MsG0580024979.01.T01 AT4G37160 26.501 483 295 18 43 509 11 449 4.65e-34 135
MsG0580024979.01.T01 AT3G13390 26.535 505 318 17 67 555 32 499 1.12e-33 135

Find 142 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCAATTGTAACAGTAAA+TGG 0.140664 5:+12471956 MsG0580024979.01.T01:CDS
TGGTTAAGGGCTACTGTTTA+TGG 0.146954 5:+12472326 MsG0580024979.01.T01:CDS
AGACCCTGCTAAATATAATT+TGG 0.195177 5:+12473879 MsG0580024979.01.T01:CDS
GTTAAACTTGCCTAGCATTT+TGG 0.196468 5:-12474356 None:intergenic
CAGCTCAACCGTAGAATTAA+AGG 0.252917 5:-12473749 None:intergenic
TCACATCCATTTCATCTTCA+TGG 0.290780 5:+12473805 MsG0580024979.01.T01:CDS
ACAACACAATCCATTCTAAT+TGG 0.290849 5:+12473196 MsG0580024979.01.T01:CDS
ATGCTCATATTCTTTGGTTA+AGG 0.305616 5:+12472312 MsG0580024979.01.T01:CDS
GCATATAACTCACATCAAAT+TGG 0.309196 5:-12471385 None:intergenic
TGTTGCTACAAGAACTTTCA+TGG 0.327046 5:+12473276 MsG0580024979.01.T01:CDS
TTCTTTATTGCTGCTTCAAC+AGG 0.329252 5:-12471359 None:intergenic
GGAAAAGGGGTTCCTGGTTT+AGG 0.331002 5:-12472365 None:intergenic
GTATGTGCATCCGACATATT+TGG 0.355480 5:-12472755 None:intergenic
TGTTTGGAATTCCTTTGTAT+TGG 0.355508 5:-12473342 None:intergenic
GGTGGCATGCTCATATTCTT+TGG 0.356615 5:+12472306 MsG0580024979.01.T01:CDS
AAAGGAGCCAAAGGCTTATC+AGG 0.358204 5:-12473658 None:intergenic
CTCCCATTTACTGTTACAAT+TGG 0.366040 5:-12471959 None:intergenic
TGCTCATATTCTTTGGTTAA+GGG 0.367150 5:+12472313 MsG0580024979.01.T01:CDS
TTTGTTGTTGGAACTGGAAT+TGG 0.368677 5:+12473838 MsG0580024979.01.T01:CDS
TTTAGAGTTGCACACTGGTT+GGG 0.368974 5:+12474259 MsG0580024979.01.T01:CDS
GTCTCATAGTTCAGATTGTA+TGG 0.369346 5:+12474410 MsG0580024979.01.T01:three_prime_UTR
GTTATTGTTCTTACGTTTCT+CGG 0.370163 5:-12472813 None:intergenic
ATGTATAGCTTCCACCAGTT+TGG 0.371631 5:-12472247 None:intergenic
GGTGCGCCAGTATAGTTAAA+AGG 0.375538 5:-12473676 None:intergenic
GCAACCCCATTTGGTTCCCT+TGG 0.381589 5:-12472730 None:intergenic
AAGTTTGTGTCATTTGCATT+AGG 0.383453 5:-12473394 None:intergenic
ATATAATTTGGTTGATCCTA+TGG 0.386113 5:+12473891 MsG0580024979.01.T01:CDS
AGCTCATCACTTTGATATCA+AGG 0.386540 5:+12473615 MsG0580024979.01.T01:CDS
GGAAAAGGAAAAGGGGTTCC+TGG 0.388932 5:-12472371 None:intergenic
CTATGGAGAGGAACACTGTT+GGG 0.398198 5:+12473908 MsG0580024979.01.T01:CDS
GATGAAGAATAAAGTTGAAA+TGG 0.402735 5:-12471197 None:intergenic
ACGGCTTTCGTTGTGGAAGA+TGG 0.405749 5:+12474290 MsG0580024979.01.T01:CDS
TGCTTTGACTAGAACATTTG+TGG 0.409362 5:-12473230 None:intergenic
TCAACCAAATTATATTTAGC+AGG 0.412948 5:-12473883 None:intergenic
TCTCTAGCAGGTTGTGGAAA+AGG 0.413807 5:-12472386 None:intergenic
TTATAACCATGAAGATGAAA+TGG 0.419238 5:-12473811 None:intergenic
AATGAAGGGATGATAGTGTT+TGG 0.419479 5:-12473358 None:intergenic
CACTGGTTGGGGATTGAAAA+CGG 0.424322 5:+12474271 MsG0580024979.01.T01:CDS
CTTTAATTCTACGGTTGAGC+TGG 0.424324 5:+12473750 MsG0580024979.01.T01:CDS
TATTTGGTGGCAACCCCATT+TGG 0.424538 5:-12472739 None:intergenic
CCTTCTGTAGCATAAATTGT+TGG 0.426238 5:-12471992 None:intergenic
TTTGCATTAGGAAGTGTTGT+AGG 0.428912 5:-12473382 None:intergenic
TATTTAGCAGGGTCTTTAGC+AGG 0.438959 5:-12473871 None:intergenic
TTTATTGTGTAACAGGAGAA+TGG 0.442017 5:+12472678 MsG0580024979.01.T01:intron
TCGGATGCACATACAATCAA+TGG 0.442094 5:+12472764 MsG0580024979.01.T01:CDS
GGAAGTGTTGTAGGAAATGA+AGG 0.446604 5:-12473373 None:intergenic
ACTTTGAGAGGAACATTAGC+AGG 0.448431 5:-12473466 None:intergenic
CAAGATCGCCTTTAATTCTA+CGG 0.451231 5:+12473741 MsG0580024979.01.T01:CDS
GTAGCATAAATTGTTGGCCC+TGG 0.454242 5:-12471986 None:intergenic
GCCCGTCTTAGTACCGAGAT+TGG 0.456234 5:-12473707 None:intergenic
CTAAACCAATAGTGTAGAAA+AGG 0.460863 5:-12473498 None:intergenic
CGGCTTTCGTTGTGGAAGAT+GGG 0.464431 5:+12474291 MsG0580024979.01.T01:CDS
ACTCAATGTCCAATCCAAAC+TGG 0.464665 5:+12472233 MsG0580024979.01.T01:CDS
TATCGCAATGGTTGGGCTGA+TGG 0.465845 5:+12472197 MsG0580024979.01.T01:CDS
AACCAATTGTAACAGTAAAT+GGG 0.467133 5:+12471957 MsG0580024979.01.T01:CDS
GTAAACCAAGGGAACCAAAT+GGG 0.470340 5:+12472725 MsG0580024979.01.T01:CDS
TTCGTTGTGGAAGATGGGCC+AGG 0.471809 5:+12474296 MsG0580024979.01.T01:CDS
TCAAATTCTCTAGCAGGTTG+TGG 0.473611 5:-12472392 None:intergenic
TAGCTTCCACCAGTTTGGAT+TGG 0.474223 5:-12472242 None:intergenic
GCAGGTTGTGGAAAAGGAAA+AGG 0.474816 5:-12472380 None:intergenic
TTGACCAGGACCAATTAGAA+TGG 0.476488 5:-12473206 None:intergenic
TTAGAGTTGCACACTGGTTG+GGG 0.479004 5:+12474260 MsG0580024979.01.T01:CDS
CAAAACAAAAGTTGTCTAAG+AGG 0.485707 5:+12471249 MsG0580024979.01.T01:CDS
ACAAGTTCAAATTCTCTAGC+AGG 0.487160 5:-12472398 None:intergenic
TTGGACCGCAATTCGATTCA+CGG 0.487234 5:+12473945 MsG0580024979.01.T01:CDS
TCTTGTCCTACATGCATCAA+TGG 0.490940 5:+12473529 MsG0580024979.01.T01:CDS
GAACAAGGAAAGAGTGGTCC+TGG 0.497425 5:-12472791 None:intergenic
CGATTCACGGCTAATAATCC+AGG 0.504440 5:+12473958 MsG0580024979.01.T01:CDS
AATATAACATATCAATTCAC+TGG 0.504449 5:+12472050 MsG0580024979.01.T01:CDS
TTGGGGTCCCTACCGGTGGT+TGG 0.507604 5:+12473926 MsG0580024979.01.T01:CDS
CAGGTTGTGGAAAAGGAAAA+GGG 0.509861 5:-12472379 None:intergenic
AACACTGTTGGGGTCCCTAC+CGG 0.517718 5:+12473919 MsG0580024979.01.T01:CDS
TTTCATGGATGCACCACTCT+CGG 0.522361 5:+12473291 MsG0580024979.01.T01:CDS
AGTAAACCAAGGGAACCAAA+TGG 0.525185 5:+12472724 MsG0580024979.01.T01:CDS
CAGGACAAAGAGGAACTTTG+TGG 0.526013 5:+12472285 MsG0580024979.01.T01:CDS
TTAAACAGTATCGCAATGGT+TGG 0.526070 5:+12472189 MsG0580024979.01.T01:CDS
AGAATGGATTGTGTTGTGAA+TGG 0.527678 5:-12473190 None:intergenic
TCGAATTGCGGTCCAACCAC+CGG 0.530904 5:-12473938 None:intergenic
ATTTAGAGTTGCACACTGGT+TGG 0.533023 5:+12474258 MsG0580024979.01.T01:CDS
TTCTTACGTTTCTCGGAACA+AGG 0.533666 5:-12472806 None:intergenic
TAAACAGTATCGCAATGGTT+GGG 0.534891 5:+12472190 MsG0580024979.01.T01:CDS
GCCAATCTCGGTACTAAGAC+GGG 0.536336 5:+12473706 MsG0580024979.01.T01:CDS
AGAACATTTGTGGTTTGACC+AGG 0.539222 5:-12473220 None:intergenic
CGGATGCACATACAATCAAT+GGG 0.539224 5:+12472765 MsG0580024979.01.T01:CDS
AGAGAATTTGAACTTGTGCT+AGG 0.539942 5:+12472404 MsG0580024979.01.T01:CDS
GCACCGTTGACCGCCAATCT+CGG 0.543409 5:+12473694 MsG0580024979.01.T01:CDS
ACAGTAAATGGGAGGTACCC+AGG 0.547259 5:+12471968 MsG0580024979.01.T01:CDS
CAATCCATTCTAATTGGTCC+TGG 0.548604 5:+12473202 MsG0580024979.01.T01:CDS
GGACATTGAGTAATATAAGC+TGG 0.548729 5:-12472221 None:intergenic
GTAGCAACAAAGTATCTGCT+TGG 0.549623 5:-12473262 None:intergenic
GTTGTCTAAGAGGAGCATAA+TGG 0.556107 5:+12471259 MsG0580024979.01.T01:CDS
TATGCAATGGAGGTTGAGAA+AGG 0.556866 5:+12473058 MsG0580024979.01.T01:CDS
CATACAATCAATGGGAAGCC+AGG 0.558040 5:+12472773 MsG0580024979.01.T01:CDS
TAGCATAAATTGTTGGCCCT+GGG 0.558784 5:-12471985 None:intergenic
ATCTGTTCTACCACCGCCAA+AGG 0.559203 5:+12474328 MsG0580024979.01.T01:CDS
ACATATGACTTCAATGTCAC+AGG 0.560816 5:+12472266 MsG0580024979.01.T01:CDS
AAAGGACCTTCCAAAATGCT+AGG 0.565423 5:+12474346 MsG0580024979.01.T01:CDS
TGTATGATTATATAGGTGTA+TGG 0.566550 5:+12474222 MsG0580024979.01.T01:intron
CGCCAATCTCGGTACTAAGA+CGG 0.571925 5:+12473705 MsG0580024979.01.T01:CDS
TGTCATGTTGTGACCAGCAA+GGG 0.572003 5:-12473137 None:intergenic
TGAAGATACATATGCAATGG+AGG 0.572819 5:+12473048 MsG0580024979.01.T01:intron
CCTATGGAGAGGAACACTGT+TGG 0.575145 5:+12473907 MsG0580024979.01.T01:CDS
AGGTTTCTATCAACTTTGAG+AGG 0.579119 5:-12473478 None:intergenic
CAGTAAATGGGAGGTACCCA+GGG 0.579786 5:+12471969 MsG0580024979.01.T01:CDS
TTTGGAAGGTCCTTTGGCGG+TGG 0.583266 5:-12474338 None:intergenic
CAACCAAATTATATTTAGCA+GGG 0.585738 5:-12473882 None:intergenic
TTCAATGTCACAGGACAAAG+AGG 0.588439 5:+12472275 MsG0580024979.01.T01:CDS
GTACCGAGATTGGCGGTCAA+CGG 0.589957 5:-12473697 None:intergenic
GCTCATCACTTTGATATCAA+GGG 0.590306 5:+12473616 MsG0580024979.01.T01:CDS
ATTGAAAACGGCTTTCGTTG+TGG 0.592669 5:+12474283 MsG0580024979.01.T01:CDS
CCAACAGTGTTCCTCTCCAT+AGG 0.596019 5:-12473907 None:intergenic
CAATGTCCAATCCAAACTGG+TGG 0.606738 5:+12472236 MsG0580024979.01.T01:CDS
TTAACAAAGATATGTGACTT+CGG 0.608585 5:-12471301 None:intergenic
AGAATGGTGGCACAAAGATG+TGG 0.608690 5:+12472694 MsG0580024979.01.T01:CDS
ATTGTTATCATGCCTAAACC+AGG 0.611746 5:+12472353 MsG0580024979.01.T01:CDS
CCAACAATTTATGCTACAGA+AGG 0.615473 5:+12471992 MsG0580024979.01.T01:CDS
TTCTCGGAACAAGGAAAGAG+TGG 0.616470 5:-12472797 None:intergenic
TTGCGGTCCAACCACCGGTA+GGG 0.617520 5:-12473933 None:intergenic
CGTCTTAGTACCGAGATTGG+CGG 0.619297 5:-12473704 None:intergenic
GGGGTTGCCACCAAATATGT+CGG 0.620199 5:+12472745 MsG0580024979.01.T01:CDS
TAAACCAAGGGAACCAAATG+GGG 0.620759 5:+12472726 MsG0580024979.01.T01:CDS
ACAGCTATATTCCAATACAA+AGG 0.622211 5:+12473331 MsG0580024979.01.T01:CDS
CTGTCATGTTGTGACCAGCA+AGG 0.622828 5:-12473138 None:intergenic
TATGGAGAGGAACACTGTTG+GGG 0.624128 5:+12473909 MsG0580024979.01.T01:CDS
TGGAAGAGATAGTAAACCAA+GGG 0.624447 5:+12472714 MsG0580024979.01.T01:CDS
ACTGTTGGGGTCCCTACCGG+TGG 0.626035 5:+12473922 MsG0580024979.01.T01:CDS
CGTGTTCCATTGATGCATGT+AGG 0.626273 5:-12473535 None:intergenic
CTTTGAGAGGAACATTAGCA+GGG 0.634352 5:-12473465 None:intergenic
TGTCATTTAGAGTTGCACAC+TGG 0.638629 5:+12474254 MsG0580024979.01.T01:CDS
ATTGCGGTCCAACCACCGGT+AGG 0.642154 5:-12473934 None:intergenic
GGACTTAAACAGTATCGCAA+TGG 0.642768 5:+12472185 MsG0580024979.01.T01:CDS
GTATAGTTAAAAGGAGCCAA+AGG 0.642857 5:-12473667 None:intergenic
ATTAGCCGTGAATCGAATTG+CGG 0.656457 5:-12473950 None:intergenic
GTGATGAGCTTGAAGAAGCG+CGG 0.657612 5:-12473602 None:intergenic
ATTTGGTTGATCCTATGGAG+AGG 0.658256 5:+12473896 MsG0580024979.01.T01:CDS
GTGGAAGAGATAGTAAACCA+AGG 0.661655 5:+12472713 MsG0580024979.01.T01:CDS
GAAGTGTTGTAGGAAATGAA+GGG 0.669774 5:-12473372 None:intergenic
ATTGTGTAACAGGAGAATGG+TGG 0.675069 5:+12472681 MsG0580024979.01.T01:intron
GACAAAGAGGAACTTTGTGG+TGG 0.676053 5:+12472288 MsG0580024979.01.T01:CDS
AGGTTGTGGAAAAGGAAAAG+GGG 0.686432 5:-12472378 None:intergenic
TGTGCATCCGACATATTTGG+TGG 0.699108 5:-12472752 None:intergenic
CAATTGTAACAGTAAATGGG+AGG 0.721812 5:+12471960 MsG0580024979.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATGATAAAAAACA+TGG - Chr5:12471511-12471530 None:intergenic 10.0%
!! AAAATAATGATAAAAAACAT+GGG - Chr5:12471510-12471529 None:intergenic 10.0%
!! TAGTATAATATATATAAGTA+TGG + Chr5:12471411-12471430 MsG0580024979.01.T01:intron 10.0%
!!! ATTATTTTTTATACGATTTT+GGG + Chr5:12471522-12471541 MsG0580024979.01.T01:intron 10.0%
!!! GTTTTTGTTATATAAATTAT+AGG + Chr5:12472159-12472178 MsG0580024979.01.T01:intron 10.0%
!!! TTTTTTATTTTTGTTTCTAA+AGG + Chr5:12474126-12474145 MsG0580024979.01.T01:intron 10.0%
!! AAAAAATTGAATTTGTATCA+TGG - Chr5:12471715-12471734 None:intergenic 15.0%
!! AAAATGAAAATCTTCTAAAT+TGG - Chr5:12474058-12474077 None:intergenic 15.0%
!! TTAGAGATGAAAAAAAAAAT+TGG + Chr5:12474029-12474048 MsG0580024979.01.T01:intron 15.0%
!! TTCAAATAAACTAAATTAGA+AGG - Chr5:12472626-12472645 None:intergenic 15.0%
!!! ACAAATTACAAATTTTAATG+AGG - Chr5:12473025-12473044 None:intergenic 15.0%
!!! CAAATTACAAATTTTAATGA+GGG - Chr5:12473024-12473043 None:intergenic 15.0%
!!! CATTATTTTTTATACGATTT+TGG + Chr5:12471521-12471540 MsG0580024979.01.T01:intron 15.0%
!!! CTTTAAAATAAATCACTTTT+AGG - Chr5:12471852-12471871 None:intergenic 15.0%
!!! GTGATTTAAAACTTTTATTT+AGG + Chr5:12472600-12472619 MsG0580024979.01.T01:intron 15.0%
!!! TTAATTAACTTAGTTTTGTT+TGG - Chr5:12472979-12472998 None:intergenic 15.0%
!!! TTGATATGTTATATTTTACA+TGG - Chr5:12472045-12472064 None:intergenic 15.0%
!!! TTTTTTACCAAACATAAATT+TGG + Chr5:12472088-12472107 MsG0580024979.01.T01:intron 15.0%
!! AAATTCTTACCATATGATAT+TGG + Chr5:12474180-12474199 MsG0580024979.01.T01:intron 20.0%
!! AATATAACATATCAATTCAC+TGG + Chr5:12472050-12472069 MsG0580024979.01.T01:CDS 20.0%
!! TGTTATATAAATTATAGGCA+TGG + Chr5:12472164-12472183 MsG0580024979.01.T01:intron 20.0%
!! TTTGGTAAAAAAGAACAAAT+TGG - Chr5:12472080-12472099 None:intergenic 20.0%
!!! AATTTTAATGAGGGAAATTT+AGG - Chr5:12473015-12473034 None:intergenic 20.0%
!!! TATGTTATATTTTACATGGT+TGG - Chr5:12472041-12472060 None:intergenic 20.0%
!!! TCTTTGTTAATAGTTCTTTT+TGG + Chr5:12471314-12471333 MsG0580024979.01.T01:CDS 20.0%
!!! TTCAAATTTTATTGTGTAAC+AGG + Chr5:12472671-12472690 MsG0580024979.01.T01:intron 20.0%
!!! TTTTGCATGTATGATTATAT+AGG + Chr5:12474215-12474234 MsG0580024979.01.T01:intron 20.0%
! AAACCAATTGTAACAGTAAA+TGG + Chr5:12471956-12471975 MsG0580024979.01.T01:CDS 25.0%
! AACCAATTGTAACAGTAAAT+GGG + Chr5:12471957-12471976 MsG0580024979.01.T01:CDS 25.0%
! AGATGAGAATCTGAAAAAAT+AGG - Chr5:12471796-12471815 None:intergenic 25.0%
! ATAATTAGTTGAACGAGATA+AGG - Chr5:12472953-12472972 None:intergenic 25.0%
! ATATAATTTGGTTGATCCTA+TGG + Chr5:12473891-12473910 MsG0580024979.01.T01:CDS 25.0%
! CAACCAAATTATATTTAGCA+GGG - Chr5:12473885-12473904 None:intergenic 25.0%
! GATGAAGAATAAAGTTGAAA+TGG - Chr5:12471200-12471219 None:intergenic 25.0%
! TATTTGCAACTAAAAAAGTG+CGG + Chr5:12472455-12472474 MsG0580024979.01.T01:intron 25.0%
! TCAACCAAATTATATTTAGC+AGG - Chr5:12473886-12473905 None:intergenic 25.0%
! TGTATGATTATATAGGTGTA+TGG + Chr5:12474222-12474241 MsG0580024979.01.T01:intron 25.0%
! TTAACAAAGATATGTGACTT+CGG - Chr5:12471304-12471323 None:intergenic 25.0%
! TTAACCAAAAAGAAATTGCT+AGG + Chr5:12474374-12474393 MsG0580024979.01.T01:three_prime_UTR 25.0%
! TTATAACCATGAAGATGAAA+TGG - Chr5:12473814-12473833 None:intergenic 25.0%
! TTATCTCGTTCAACTAATTA+TGG + Chr5:12472952-12472971 MsG0580024979.01.T01:intron 25.0%
!! TTTACGTCTCTAATTTTCTT+CGG + Chr5:12474077-12474096 MsG0580024979.01.T01:intron 25.0%
!!! ATAGTTCTTTTTGGTTTTCT+TGG + Chr5:12471323-12471342 MsG0580024979.01.T01:CDS 25.0%
!!! ATTATGTCACGTTTTAGTAA+AGG - Chr5:12471485-12471504 None:intergenic 25.0%
!!! GGTTATAACTTTTTTGTTGT+TGG + Chr5:12473826-12473845 MsG0580024979.01.T01:CDS 25.0%
!!! TTTTGAAGATACATATGCAA+TGG + Chr5:12473045-12473064 MsG0580024979.01.T01:intron 25.0%
ACAACACAATCCATTCTAAT+TGG + Chr5:12473196-12473215 MsG0580024979.01.T01:CDS 30.0%
ACAGCTATATTCCAATACAA+AGG + Chr5:12473331-12473350 MsG0580024979.01.T01:CDS 30.0%
AGACCCTGCTAAATATAATT+TGG + Chr5:12473879-12473898 MsG0580024979.01.T01:CDS 30.0%
AGGTCGCTTATAAAAAATGA+CGG - Chr5:12472856-12472875 None:intergenic 30.0%
ATACAATACAACCTCAATCA+TGG - Chr5:12472523-12472542 None:intergenic 30.0%
ATGCTCATATTCTTTGGTTA+AGG + Chr5:12472312-12472331 MsG0580024979.01.T01:CDS 30.0%
CAAAACAAAAGTTGTCTAAG+AGG + Chr5:12471249-12471268 MsG0580024979.01.T01:CDS 30.0%
CATGTGACCAAATTTATGTT+TGG - Chr5:12472098-12472117 None:intergenic 30.0%
CTAAACCAATAGTGTAGAAA+AGG - Chr5:12473501-12473520 None:intergenic 30.0%
GAGATTCTAACAAGAAAACA+TGG + Chr5:12472130-12472149 MsG0580024979.01.T01:intron 30.0%
GCATATAACTCACATCAAAT+TGG - Chr5:12471388-12471407 None:intergenic 30.0%
GTTATTGTTCTTACGTTTCT+CGG - Chr5:12472816-12472835 None:intergenic 30.0%
TAACATATCAATTCACTGGT+AGG + Chr5:12472054-12472073 MsG0580024979.01.T01:intron 30.0%
TCATATGGTAAGAATTTGAC+AGG - Chr5:12474177-12474196 None:intergenic 30.0%
TGATTGAGGTTGTATTGTAT+CGG + Chr5:12472523-12472542 MsG0580024979.01.T01:intron 30.0%
TGCTCATATTCTTTGGTTAA+GGG + Chr5:12472313-12472332 MsG0580024979.01.T01:CDS 30.0%
TGTCAACAACTGCATTAAAA+AGG + Chr5:12473988-12474007 MsG0580024979.01.T01:intron 30.0%
TTTATTGTGTAACAGGAGAA+TGG + Chr5:12472678-12472697 MsG0580024979.01.T01:intron 30.0%
! AGAAACCTTTTCTACACTAT+TGG + Chr5:12473493-12473512 MsG0580024979.01.T01:CDS 30.0%
! AGAATAACTGCAATTTTTGC+AGG - Chr5:12474486-12474505 None:intergenic 30.0%
! TGTTTGGAATTCCTTTGTAT+TGG - Chr5:12473345-12473364 None:intergenic 30.0%
! TTTTAATGCAGTTGTTGACA+AGG - Chr5:12473988-12474007 None:intergenic 30.0%
!! AAGTTTGTGTCATTTGCATT+AGG - Chr5:12473397-12473416 None:intergenic 30.0%
!!! AACTTTTTTGTTGTTGGAAC+TGG + Chr5:12473832-12473851 MsG0580024979.01.T01:CDS 30.0%
!!! CTTTTCTACACTATTGGTTT+AGG + Chr5:12473499-12473518 MsG0580024979.01.T01:CDS 30.0%
ACAAGTTCAAATTCTCTAGC+AGG - Chr5:12472401-12472420 None:intergenic 35.0%
ACATATGACTTCAATGTCAC+AGG + Chr5:12472266-12472285 MsG0580024979.01.T01:CDS 35.0%
ACATGCATGCCAATATCATA+TGG - Chr5:12474192-12474211 None:intergenic 35.0%
AGAGAATTTGAACTTGTGCT+AGG + Chr5:12472404-12472423 MsG0580024979.01.T01:CDS 35.0%
AGCTCATCACTTTGATATCA+AGG + Chr5:12473615-12473634 MsG0580024979.01.T01:CDS 35.0%
AGGTTTCTATCAACTTTGAG+AGG - Chr5:12473481-12473500 None:intergenic 35.0%
ATTGTTATCATGCCTAAACC+AGG + Chr5:12472353-12472372 MsG0580024979.01.T01:CDS 35.0%
CAAAAAGAAATTGCTAGGCA+TGG + Chr5:12474379-12474398 MsG0580024979.01.T01:three_prime_UTR 35.0%
CAAAAGAACGCTTATAACGA+GGG + Chr5:12472886-12472905 MsG0580024979.01.T01:intron 35.0%
CAAGATCGCCTTTAATTCTA+CGG + Chr5:12473741-12473760 MsG0580024979.01.T01:CDS 35.0%
CAATTGTAACAGTAAATGGG+AGG + Chr5:12471960-12471979 MsG0580024979.01.T01:CDS 35.0%
CCAACAATTTATGCTACAGA+AGG + Chr5:12471992-12472011 MsG0580024979.01.T01:CDS 35.0%
CCTTCTGTAGCATAAATTGT+TGG - Chr5:12471995-12472014 None:intergenic 35.0%
CTCCCATTTACTGTTACAAT+TGG - Chr5:12471962-12471981 None:intergenic 35.0%
GAATTTGACAGGACAATGTA+AGG - Chr5:12474166-12474185 None:intergenic 35.0%
GCTCATCACTTTGATATCAA+GGG + Chr5:12473616-12473635 MsG0580024979.01.T01:CDS 35.0%
GGACATTGAGTAATATAAGC+TGG - Chr5:12472224-12472243 None:intergenic 35.0%
GTATAGTTAAAAGGAGCCAA+AGG - Chr5:12473670-12473689 None:intergenic 35.0%
GTCTCATAGTTCAGATTGTA+TGG + Chr5:12474410-12474429 MsG0580024979.01.T01:three_prime_UTR 35.0%
TAAACAGTATCGCAATGGTT+GGG + Chr5:12472190-12472209 MsG0580024979.01.T01:CDS 35.0%
TCACATCCATTTCATCTTCA+TGG + Chr5:12473805-12473824 MsG0580024979.01.T01:CDS 35.0%
TCGCTTATAAAAAATGACGG+AGG - Chr5:12472853-12472872 None:intergenic 35.0%
TGAAGATACATATGCAATGG+AGG + Chr5:12473048-12473067 MsG0580024979.01.T01:intron 35.0%
TGCTTTGACTAGAACATTTG+TGG - Chr5:12473233-12473252 None:intergenic 35.0%
TGGAAGAGATAGTAAACCAA+GGG + Chr5:12472714-12472733 MsG0580024979.01.T01:CDS 35.0%
TGTTGCTACAAGAACTTTCA+TGG + Chr5:12473276-12473295 MsG0580024979.01.T01:CDS 35.0%
TTAAACAGTATCGCAATGGT+TGG + Chr5:12472189-12472208 MsG0580024979.01.T01:CDS 35.0%
! AATGAAGGGATGATAGTGTT+TGG - Chr5:12473361-12473380 None:intergenic 35.0%
! AGAACAGATTGATCTTTTCC+TGG - Chr5:12474317-12474336 None:intergenic 35.0%
! CATGCCTAGCAATTTCTTTT+TGG - Chr5:12474381-12474400 None:intergenic 35.0%
! GTTAAACTTGCCTAGCATTT+TGG - Chr5:12474359-12474378 None:intergenic 35.0%
! TGATTTTCCTGATAAGCCTT+TGG + Chr5:12473651-12473670 MsG0580024979.01.T01:CDS 35.0%
! TTCTTTATTGCTGCTTCAAC+AGG - Chr5:12471362-12471381 None:intergenic 35.0%
!! AGAATGGATTGTGTTGTGAA+TGG - Chr5:12473193-12473212 None:intergenic 35.0%
!! GAAGTGTTGTAGGAAATGAA+GGG - Chr5:12473375-12473394 None:intergenic 35.0%
!! TTGGCTCCTTTTAACTATAC+TGG + Chr5:12473670-12473689 MsG0580024979.01.T01:CDS 35.0%
!! TTTGCATTAGGAAGTGTTGT+AGG - Chr5:12473385-12473404 None:intergenic 35.0%
!! TTTGTTGTTGGAACTGGAAT+TGG + Chr5:12473838-12473857 MsG0580024979.01.T01:CDS 35.0%
!!! CTGTTACAATTGGTTTTGCA+TGG - Chr5:12471952-12471971 None:intergenic 35.0%
AAAGGACCTTCCAAAATGCT+AGG + Chr5:12474346-12474365 MsG0580024979.01.T01:CDS 40.0%
ACTCAATGTCCAATCCAAAC+TGG + Chr5:12472233-12472252 MsG0580024979.01.T01:CDS 40.0%
AGAACATTTGTGGTTTGACC+AGG - Chr5:12473223-12473242 None:intergenic 40.0%
AGGTTGTGGAAAAGGAAAAG+GGG - Chr5:12472381-12472400 None:intergenic 40.0%
AGTAAACCAAGGGAACCAAA+TGG + Chr5:12472724-12472743 MsG0580024979.01.T01:CDS 40.0%
AGTTGTTGACAAGGTATACC+TGG - Chr5:12473979-12473998 None:intergenic 40.0%
ATGTATAGCTTCCACCAGTT+TGG - Chr5:12472250-12472269 None:intergenic 40.0%
ATTAGCCGTGAATCGAATTG+CGG - Chr5:12473953-12473972 None:intergenic 40.0%
ATTGAAAACGGCTTTCGTTG+TGG + Chr5:12474283-12474302 MsG0580024979.01.T01:CDS 40.0%
ATTGTGTAACAGGAGAATGG+TGG + Chr5:12472681-12472700 MsG0580024979.01.T01:intron 40.0%
ATTTGGTTGATCCTATGGAG+AGG + Chr5:12473896-12473915 MsG0580024979.01.T01:CDS 40.0%
CAATCCATTCTAATTGGTCC+TGG + Chr5:12473202-12473221 MsG0580024979.01.T01:CDS 40.0%
CAGCTCAACCGTAGAATTAA+AGG - Chr5:12473752-12473771 None:intergenic 40.0%
CAGGTTGTGGAAAAGGAAAA+GGG - Chr5:12472382-12472401 None:intergenic 40.0%
CGGATGCACATACAATCAAT+GGG + Chr5:12472765-12472784 MsG0580024979.01.T01:CDS 40.0%
CTTTAATTCTACGGTTGAGC+TGG + Chr5:12473750-12473769 MsG0580024979.01.T01:CDS 40.0%
GCAAAAGAACGCTTATAACG+AGG + Chr5:12472885-12472904 MsG0580024979.01.T01:intron 40.0%
GGACTTAAACAGTATCGCAA+TGG + Chr5:12472185-12472204 MsG0580024979.01.T01:CDS 40.0%
GTAAACCAAGGGAACCAAAT+GGG + Chr5:12472725-12472744 MsG0580024979.01.T01:CDS 40.0%
GTATGTGCATCCGACATATT+TGG - Chr5:12472758-12472777 None:intergenic 40.0%
GTGGAAGAGATAGTAAACCA+AGG + Chr5:12472713-12472732 MsG0580024979.01.T01:CDS 40.0%
TAAACCAAGGGAACCAAATG+GGG + Chr5:12472726-12472745 MsG0580024979.01.T01:CDS 40.0%
TACAACCTCAATCATGGTCA+TGG - Chr5:12472517-12472536 None:intergenic 40.0%
TAGCATAAATTGTTGGCCCT+GGG - Chr5:12471988-12472007 None:intergenic 40.0%
TATGCAATGGAGGTTGAGAA+AGG + Chr5:12473058-12473077 MsG0580024979.01.T01:CDS 40.0%
TATTTAGCAGGGTCTTTAGC+AGG - Chr5:12473874-12473893 None:intergenic 40.0%
TCAAATTCTCTAGCAGGTTG+TGG - Chr5:12472395-12472414 None:intergenic 40.0%
TCGGATGCACATACAATCAA+TGG + Chr5:12472764-12472783 MsG0580024979.01.T01:CDS 40.0%
TCTTGTCCTACATGCATCAA+TGG + Chr5:12473529-12473548 MsG0580024979.01.T01:CDS 40.0%
TGGTTAAGGGCTACTGTTTA+TGG + Chr5:12472326-12472345 MsG0580024979.01.T01:CDS 40.0%
TTCAATGTCACAGGACAAAG+AGG + Chr5:12472275-12472294 MsG0580024979.01.T01:CDS 40.0%
TTCTTACGTTTCTCGGAACA+AGG - Chr5:12472809-12472828 None:intergenic 40.0%
TTGACCAGGACCAATTAGAA+TGG - Chr5:12473209-12473228 None:intergenic 40.0%
! AACTTGCCTAGCATTTTGGA+AGG - Chr5:12474355-12474374 None:intergenic 40.0%
! ACTTTGAGAGGAACATTAGC+AGG - Chr5:12473469-12473488 None:intergenic 40.0%
! ATTTAGAGTTGCACACTGGT+TGG + Chr5:12474258-12474277 MsG0580024979.01.T01:CDS 40.0%
! CGTTCTTTTGCACTCACAAA+AGG - Chr5:12472876-12472895 None:intergenic 40.0%
! CTTTGAGAGGAACATTAGCA+GGG - Chr5:12473468-12473487 None:intergenic 40.0%
! GAACTTTTCTTTTCCCTTGC+TGG + Chr5:12473124-12473143 MsG0580024979.01.T01:CDS 40.0%
! GTAGCAACAAAGTATCTGCT+TGG - Chr5:12473265-12473284 None:intergenic 40.0%
! GTTGTCTAAGAGGAGCATAA+TGG + Chr5:12471259-12471278 MsG0580024979.01.T01:CDS 40.0%
! TGTCATTTAGAGTTGCACAC+TGG + Chr5:12474254-12474273 MsG0580024979.01.T01:CDS 40.0%
! TTTAGAGTTGCACACTGGTT+GGG + Chr5:12474259-12474278 MsG0580024979.01.T01:CDS 40.0%
!! GGAAGTGTTGTAGGAAATGA+AGG - Chr5:12473376-12473395 None:intergenic 40.0%
!! GTTTTGTTATCAACCGAGAG+TGG - Chr5:12473307-12473326 None:intergenic 40.0%
!! TAGCATTTTGGAAGGTCCTT+TGG - Chr5:12474347-12474366 None:intergenic 40.0%
AAAGGAGCCAAAGGCTTATC+AGG - Chr5:12473661-12473680 None:intergenic 45.0%
AGAATGGTGGCACAAAGATG+TGG + Chr5:12472694-12472713 MsG0580024979.01.T01:CDS 45.0%
CAATGTCCAATCCAAACTGG+TGG + Chr5:12472236-12472255 MsG0580024979.01.T01:CDS 45.0%
CAGGACAAAGAGGAACTTTG+TGG + Chr5:12472285-12472304 MsG0580024979.01.T01:CDS 45.0%
CATACAATCAATGGGAAGCC+AGG + Chr5:12472773-12472792 MsG0580024979.01.T01:CDS 45.0%
CGATTCACGGCTAATAATCC+AGG + Chr5:12473958-12473977 MsG0580024979.01.T01:CDS 45.0%
CGTGTTCCATTGATGCATGT+AGG - Chr5:12473538-12473557 None:intergenic 45.0%
CTATGGAGAGGAACACTGTT+GGG + Chr5:12473908-12473927 MsG0580024979.01.T01:CDS 45.0%
GACAAAGAGGAACTTTGTGG+TGG + Chr5:12472288-12472307 MsG0580024979.01.T01:CDS 45.0%
GACGGAGGTAGTACAAACTT+GGG - Chr5:12472838-12472857 None:intergenic 45.0%
GATCTCCATGACCATGATTG+AGG + Chr5:12472509-12472528 MsG0580024979.01.T01:intron 45.0%
GCAGGTTGTGGAAAAGGAAA+AGG - Chr5:12472383-12472402 None:intergenic 45.0%
GGTGCGCCAGTATAGTTAAA+AGG - Chr5:12473679-12473698 None:intergenic 45.0%
GGTGGCATGCTCATATTCTT+TGG + Chr5:12472306-12472325 MsG0580024979.01.T01:CDS 45.0%
GTAGCATAAATTGTTGGCCC+TGG - Chr5:12471989-12472008 None:intergenic 45.0%
TAGCTTCCACCAGTTTGGAT+TGG - Chr5:12472245-12472264 None:intergenic 45.0%
TATGGAGAGGAACACTGTTG+GGG + Chr5:12473909-12473928 MsG0580024979.01.T01:CDS 45.0%
TCTCTAGCAGGTTGTGGAAA+AGG - Chr5:12472389-12472408 None:intergenic 45.0%
TGACGGAGGTAGTACAAACT+TGG - Chr5:12472839-12472858 None:intergenic 45.0%
TGTCATGTTGTGACCAGCAA+GGG - Chr5:12473140-12473159 None:intergenic 45.0%
TGTGCATCCGACATATTTGG+TGG - Chr5:12472755-12472774 None:intergenic 45.0%
TTCTCGGAACAAGGAAAGAG+TGG - Chr5:12472800-12472819 None:intergenic 45.0%
TTGGACCGCAATTCGATTCA+CGG + Chr5:12473945-12473964 MsG0580024979.01.T01:CDS 45.0%
TTTCATGGATGCACCACTCT+CGG + Chr5:12473291-12473310 MsG0580024979.01.T01:CDS 45.0%
! CACTGGTTGGGGATTGAAAA+CGG + Chr5:12474271-12474290 MsG0580024979.01.T01:CDS 45.0%
! TATTTGGTGGCAACCCCATT+TGG - Chr5:12472742-12472761 None:intergenic 45.0%
! TTAGAGTTGCACACTGGTTG+GGG + Chr5:12474260-12474279 MsG0580024979.01.T01:CDS 45.0%
!! CATTTTGGAAGGTCCTTTGG+CGG - Chr5:12474344-12474363 None:intergenic 45.0%
ACGGCTTTCGTTGTGGAAGA+TGG + Chr5:12474290-12474309 MsG0580024979.01.T01:CDS 50.0%
ATCTGTTCTACCACCGCCAA+AGG + Chr5:12474328-12474347 MsG0580024979.01.T01:CDS 50.0%
CCAACAGTGTTCCTCTCCAT+AGG - Chr5:12473910-12473929 None:intergenic 50.0%
CCTATGGAGAGGAACACTGT+TGG + Chr5:12473907-12473926 MsG0580024979.01.T01:CDS 50.0%
CGCCAATCTCGGTACTAAGA+CGG + Chr5:12473705-12473724 MsG0580024979.01.T01:CDS 50.0%
CGGCTTTCGTTGTGGAAGAT+GGG + Chr5:12474291-12474310 MsG0580024979.01.T01:CDS 50.0%
CTGTCATGTTGTGACCAGCA+AGG - Chr5:12473141-12473160 None:intergenic 50.0%
GAACAAGGAAAGAGTGGTCC+TGG - Chr5:12472794-12472813 None:intergenic 50.0%
GCCAATCTCGGTACTAAGAC+GGG + Chr5:12473706-12473725 MsG0580024979.01.T01:CDS 50.0%
GGAAAAGGAAAAGGGGTTCC+TGG - Chr5:12472374-12472393 None:intergenic 50.0%
GGAAAAGGGGTTCCTGGTTT+AGG - Chr5:12472368-12472387 None:intergenic 50.0%
GGGGTTGCCACCAAATATGT+CGG + Chr5:12472745-12472764 MsG0580024979.01.T01:CDS 50.0%
GTGATGAGCTTGAAGAAGCG+CGG - Chr5:12473605-12473624 None:intergenic 50.0%
TATCGCAATGGTTGGGCTGA+TGG + Chr5:12472197-12472216 MsG0580024979.01.T01:CDS 50.0%
! CGTCTTAGTACCGAGATTGG+CGG - Chr5:12473707-12473726 None:intergenic 50.0%
!! ACAGTAAATGGGAGGTACCC+AGG + Chr5:12471968-12471987 MsG0580024979.01.T01:CDS 50.0%
!! CAGTAAATGGGAGGTACCCA+GGG + Chr5:12471969-12471988 MsG0580024979.01.T01:CDS 50.0%
!! GCTTGAAGAAGCGCGGTTTT+CGG - Chr5:12473598-12473617 None:intergenic 50.0%
AACACTGTTGGGGTCCCTAC+CGG + Chr5:12473919-12473938 MsG0580024979.01.T01:CDS 55.0%
GTACCGAGATTGGCGGTCAA+CGG - Chr5:12473700-12473719 None:intergenic 55.0%
TCGAATTGCGGTCCAACCAC+CGG - Chr5:12473941-12473960 None:intergenic 55.0%
TTCGTTGTGGAAGATGGGCC+AGG + Chr5:12474296-12474315 MsG0580024979.01.T01:CDS 55.0%
TTTGGAAGGTCCTTTGGCGG+TGG - Chr5:12474341-12474360 None:intergenic 55.0%
! GCAACCCCATTTGGTTCCCT+TGG - Chr5:12472733-12472752 None:intergenic 55.0%
! GCCCGTCTTAGTACCGAGAT+TGG - Chr5:12473710-12473729 None:intergenic 55.0%
ATTGCGGTCCAACCACCGGT+AGG - Chr5:12473937-12473956 None:intergenic 60.0%
GCACCGTTGACCGCCAATCT+CGG + Chr5:12473694-12473713 MsG0580024979.01.T01:CDS 60.0%
TTGCGGTCCAACCACCGGTA+GGG - Chr5:12473936-12473955 None:intergenic 60.0%
ACTGTTGGGGTCCCTACCGG+TGG + Chr5:12473922-12473941 MsG0580024979.01.T01:CDS 65.0%
TTGGGGTCCCTACCGGTGGT+TGG + Chr5:12473926-12473945 MsG0580024979.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 12471191 12474580 12471191 ID=MsG0580024979.01;Name=MsG0580024979.01
Chr5 mRNA 12471191 12474580 12471191 ID=MsG0580024979.01.T01;Parent=MsG0580024979.01;Name=MsG0580024979.01.T01;_AED=0.48;_eAED=0.49;_QI=0|1|0.83|1|1|1|6|213|595
Chr5 exon 12471191 12471394 12471191 ID=MsG0580024979.01.T01:exon:19888;Parent=MsG0580024979.01.T01
Chr5 exon 12471920 12472071 12471920 ID=MsG0580024979.01.T01:exon:19889;Parent=MsG0580024979.01.T01
Chr5 exon 12472181 12472425 12472181 ID=MsG0580024979.01.T01:exon:19890;Parent=MsG0580024979.01.T01
Chr5 exon 12472693 12472821 12472693 ID=MsG0580024979.01.T01:exon:19891;Parent=MsG0580024979.01.T01
Chr5 exon 12473053 12473979 12473053 ID=MsG0580024979.01.T01:exon:19892;Parent=MsG0580024979.01.T01
Chr5 exon 12474237 12474580 12474237 ID=MsG0580024979.01.T01:exon:19893;Parent=MsG0580024979.01.T01
Chr5 CDS 12471191 12471394 12471191 ID=MsG0580024979.01.T01:cds;Parent=MsG0580024979.01.T01
Chr5 CDS 12471920 12472071 12471920 ID=MsG0580024979.01.T01:cds;Parent=MsG0580024979.01.T01
Chr5 CDS 12472181 12472425 12472181 ID=MsG0580024979.01.T01:cds;Parent=MsG0580024979.01.T01
Chr5 CDS 12472693 12472821 12472693 ID=MsG0580024979.01.T01:cds;Parent=MsG0580024979.01.T01
Chr5 CDS 12473053 12473979 12473053 ID=MsG0580024979.01.T01:cds;Parent=MsG0580024979.01.T01
Chr5 CDS 12474237 12474367 12474237 ID=MsG0580024979.01.T01:cds;Parent=MsG0580024979.01.T01
Chr5 three_prime_UTR 12474368 12474580 12474368 ID=MsG0580024979.01.T01:three_prime_utr;Parent=MsG0580024979.01.T01
Gene Sequence

>MsG0580024979.01.T01

ATGCTACCATTTCAACTTTATTCTTCATCAAAGAGTTTCTCATATATCAACAATATTACAAAACAAAAGTTGTCTAAGAGGAGCATAATGGCTTATCATATGATGAGCTTCCGAAGTCACATATCTTTGTTAATAGTTCTTTTTGGTTTTCTTGGCTTAATCTCTTTTCCTGTTGAAGCAGCAATAAAGAAATACCAATTTGATATTCAAATGAAGAATGTGAGTAGACTATGCCATGCAAAACCAATTGTAACAGTAAATGGGAGGTACCCAGGGCCAACAATTTATGCTACAGAAGGAGATAGAGTACAAATCAATGTCACCAACCATGTAAAATATAACATATCAATTCACTGGCATGGACTTAAACAGTATCGCAATGGTTGGGCTGATGGACCAGCTTATATTACTCAATGTCCAATCCAAACTGGTGGAAGCTATACATATGACTTCAATGTCACAGGACAAAGAGGAACTTTGTGGTGGCATGCTCATATTCTTTGGTTAAGGGCTACTGTTTATGGTGCAATTGTTATCATGCCTAAACCAGGAACCCCTTTTCCTTTTCCACAACCTGCTAGAGAATTTGAACTTGTGCTAGGAGAATGGTGGCACAAAGATGTGGAAGAGATAGTAAACCAAGGGAACCAAATGGGGTTGCCACCAAATATGTCGGATGCACATACAATCAATGGGAAGCCAGGACCACTCTTTCCTTGTTCCGAGAAACATACATATGCAATGGAGGTTGAGAAAGGCAAGACATATCTGCTAAGAATCATCAATGCTGCTCTTAATGATGAACTTTTCTTTTCCCTTGCTGGTCACAACATGACAGTAGTTGAAGTTGATGCAGTTTACACAAAACCATTCACAACACAATCCATTCTAATTGGTCCTGGTCAAACCACAAATGTTCTAGTCAAAGCAAACAAAATTCCAAGCAGATACTTTGTTGCTACAAGAACTTTCATGGATGCACCACTCTCGGTTGATAACAAAACTGCTACAGCTATATTCCAATACAAAGGAATTCCAAACACTATCATCCCTTCATTTCCTACAACACTTCCTAATGCAAATGACACAAACTTTGCTTTGAATTATAGCAAAAAAATAAGAAGCTTAAACTCTGCTAAATACCCTGCTAATGTTCCTCTCAAAGTTGATAGAAACCTTTTCTACACTATTGGTTTAGGCATGAATTCTTGTCCTACATGCATCAATGGAACACGTTTAGTTGCATCACTTAACAATGTAACTTTTGTGATGCCGAAAACCGCGCTTCTTCAAGCTCATCACTTTGATATCAAGGGTGTTTTTAGAACTGATTTTCCTGATAAGCCTTTGGCTCCTTTTAACTATACTGGCGCACCGTTGACCGCCAATCTCGGTACTAAGACGGGCACAAGAGTTAGCAAGATCGCCTTTAATTCTACGGTTGAGCTGGTTTTGCAAGATACTAATCTTCTCACAGTTGAATCACATCCATTTCATCTTCATGGTTATAACTTTTTTGTTGTTGGAACTGGAATTGGCAATTTTGATCCTGCTAAAGACCCTGCTAAATATAATTTGGTTGATCCTATGGAGAGGAACACTGTTGGGGTCCCTACCGGTGGTTGGACCGCAATTCGATTCACGGCTAATAATCCAGGTGTATGGTTCATGCATTGTCATTTAGAGTTGCACACTGGTTGGGGATTGAAAACGGCTTTCGTTGTGGAAGATGGGCCAGGAAAAGATCAATCTGTTCTACCACCGCCAAAGGACCTTCCAAAATGCTAG
Protein sequence

>MsG0580024979.01.T01

MLPFQLYSSSKSFSYINNITKQKLSKRSIMAYHMMSFRSHISLLIVLFGFLGLISFPVEAAIKKYQFDIQMKNVSRLCHAKPIVTVNGRYPGPTIYATEGDRVQINVTNHVKYNISIHWHGLKQYRNGWADGPAYITQCPIQTGGSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKPGTPFPFPQPAREFELVLGEWWHKDVEEIVNQGNQMGLPPNMSDAHTINGKPGPLFPCSEKHTYAMEVEKGKTYLLRIINAALNDELFFSLAGHNMTVVEVDAVYTKPFTTQSILIGPGQTTNVLVKANKIPSRYFVATRTFMDAPLSVDNKTATAIFQYKGIPNTIIPSFPTTLPNANDTNFALNYSKKIRSLNSAKYPANVPLKVDRNLFYTIGLGMNSCPTCINGTRLVASLNNVTFVMPKTALLQAHHFDIKGVFRTDFPDKPLAPFNYTGAPLTANLGTKTGTRVSKIAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPAKDPAKYNLVDPMERNTVGVPTGGWTAIRFTANNPGVWFMHCHLELHTGWGLKTAFVVEDGPGKDQSVLPPPKDLPKC*