AlfalfaGEDB | MsG0580025624.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025624.01

KEGG: K03754
GO: GO:0044237
PFAM: PF01008

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025624.01.T01	XP_003613023.2	99.275	414	3	0	1	414	1	414	0	837

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025624.01.T01	Q54EY2	41.667	396	204	8	11	405	16	385	2.18E-93	289

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025624.01.T01	G7JWC0	99.275	414	3	0	1	414	1	414	0.0	837

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0380015510.01	MsG0580025624.01	PPI
MsG0380015511.01	MsG0580025624.01	PPI
MsG0480021288.01	MsG0580025624.01	PPI
MsG0580025624.01	MsG0780041671.01	PPI
MsG0580025624.01	MsG0380015510.01	PPI
MsG0580027907.01	MsG0580025624.01	PPI

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025624.01.T01	MTR_5g031790	99.275	414	3	0	1	414	1	414	0.0	837
MsG0580025624.01.T01	MTR_5g031790	98.500	400	6	0	15	414	12	411	0.0	800
MsG0580025624.01.T01	MTR_8g023040	29.130	230	138	3	160	389	144	348	1.04e-19	90.1
MsG0580025624.01.T01	MTR_6g017100	28.095	210	135	4	198	398	262	464	9.36e-17	82.4
MsG0580025624.01.T01	MTR_6g017100	28.095	210	135	4	198	398	442	644	3.43e-16	81.3
MsG0580025624.01.T01	MTR_2g055750	26.446	242	150	5	176	398	218	450	9.11e-16	79.3
MsG0580025624.01.T01	MTR_2g055750	26.446	242	150	5	176	398	141	373	1.35e-15	78.2
MsG0580025624.01.T01	MTR_2g055750	26.446	242	150	5	176	398	397	629	1.42e-15	79.3
MsG0580025624.01.T01	MTR_2g055750	27.193	228	138	5	176	384	141	359	2.90e-15	77.0
MsG0580025624.01.T01	MTR_2g055750	27.193	228	138	5	176	384	218	436	3.06e-15	77.4

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025624.01.T01	AT3G07300	81.418	409	71	3	1	406	1	407	0.0	649
MsG0580025624.01.T01	AT3G07300	81.418	409	71	3	1	406	1	407	0.0	649
MsG0580025624.01.T01	AT3G07300	81.907	409	71	2	1	406	1	409	0.0	635
MsG0580025624.01.T01	AT1G53880	34.375	192	115	2	198	389	194	374	2.45e-21	95.5
MsG0580025624.01.T01	AT2G44070	29.694	229	149	3	176	398	98	320	6.14e-21	93.6
MsG0580025624.01.T01	AT1G53900	34.375	192	115	2	198	389	389	569	1.44e-20	94.4
MsG0580025624.01.T01	AT1G53900	34.375	192	115	2	198	389	404	584	1.64e-20	94.4
MsG0580025624.01.T01	AT1G53900	34.375	192	115	2	198	389	413	593	1.70e-20	94.4
MsG0580025624.01.T01	AT1G72340	32.812	192	118	2	198	389	191	371	1.04e-19	90.5
MsG0580025624.01.T01	AT1G72340	32.812	192	118	2	198	389	218	398	1.97e-19	90.1

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 132 sgRNAs with CRISPR-Local

Find 540 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCAAGTAGCTCAGATG+GGG	0.670560	5:+21411303	None:intergenic
AACAGGCAGCAGAGTTGCTT+CGG	0.442571	5:-21416870	MsG0580025624.01.T01:CDS
AACCATATTTAATCCAACTG+GGG	0.718901	5:+21412757	None:intergenic
AATAGGACTTCAGGATTGTG+TGG	0.568015	5:+21411340	None:intergenic
AATTTAGGGAACTGTGGTTT+TGG	0.193093	5:+21418362	None:intergenic
ACAGCAGCAGCAGATAAAAC+AGG	0.508963	5:+21415720	None:intergenic
ACATCTCCTTGCAAAGGAAT+TGG	0.407266	5:-21413033	MsG0580025624.01.T01:CDS
ACTTGACTTTGGGGAGTTCT+CGG	0.423510	5:-21411290	MsG0580025624.01.T01:CDS
AGAAGAGTTTGCAATGATGG+TGG	0.621504	5:+21415669	None:intergenic
AGCACAAAGAAATTCCAACA+CGG	0.736757	5:+21413227	None:intergenic

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAGTAGTTTCTCCAC+TGG	+	Chr5:21413185-21413204	None:intergenic	30.0%
AACAAAACTCAAACTCCAAA+CGG	+	Chr5:21413692-21413711	None:intergenic	30.0%
AACCATATTTAATCCAACTG+GGG	+	Chr5:21415862-21415881	None:intergenic	30.0%
ACACATCTTAGAGTAGATTA+AGG	+	Chr5:21413869-21413888	None:intergenic	30.0%
ACTATAACCTATATAATGGC+AGG	+	Chr5:21415801-21415820	None:intergenic	30.0%
ACTCACCAAAAATCATTCTA+AGG	-	Chr5:21413227-21413246	MsG0580025624.01.T01:CDS	30.0%
ACTTACAAAGCTGATATAAG+TGG	-	Chr5:21415742-21415761	MsG0580025624.01.T01:CDS	30.0%
AGTGATTACCTAGGAAATAT+CGG	+	Chr5:21411299-21411318	None:intergenic	30.0%
ATAAGATCAACAGGTATTTG+AGG	+	Chr5:21412396-21412415	None:intergenic	30.0%
ATACAAGTCAAAAAAGTAGG+GGG	+	Chr5:21418203-21418222	None:intergenic	30.0%

Showing 1 to 10 of 540 entries

Previous1 2 3 4 5…54Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	21410208	21418430	21410208	ID=MsG0580025624.01;Name=MsG0580025624.01
Chr5	mRNA	21410208	21418430	21410208	ID=MsG0580025624.01.T01;Parent=MsG0580025624.01;Name=MsG0580025624.01.T01;_AED=0.39;_eAED=0.39;_QI=161\|1\|1\|1\|0.7\|0.54\|11\|480\|414
Chr5	exon	21410208	21410656	21410208	ID=MsG0580025624.01.T01:exon:23679;Parent=MsG0580025624.01.T01
Chr5	exon	21410950	21411077	21410950	ID=MsG0580025624.01.T01:exon:23678;Parent=MsG0580025624.01.T01
Chr5	exon	21411193	21411377	21411193	ID=MsG0580025624.01.T01:exon:23677;Parent=MsG0580025624.01.T01
Chr5	exon	21412700	21412825	21412700	ID=MsG0580025624.01.T01:exon:23676;Parent=MsG0580025624.01.T01
Chr5	exon	21412962	21413064	21412962	ID=MsG0580025624.01.T01:exon:23675;Parent=MsG0580025624.01.T01
Chr5	exon	21413174	21413281	21413174	ID=MsG0580025624.01.T01:exon:23674;Parent=MsG0580025624.01.T01
Chr5	exon	21414783	21414912	21414783	ID=MsG0580025624.01.T01:exon:23673;Parent=MsG0580025624.01.T01
Chr5	exon	21415595	21415882	21415595	ID=MsG0580025624.01.T01:exon:23672;Parent=MsG0580025624.01.T01
Chr5	exon	21416767	21416921	21416767	ID=MsG0580025624.01.T01:exon:23671;Parent=MsG0580025624.01.T01
Chr5	exon	21417095	21417164	21417095	ID=MsG0580025624.01.T01:exon:23670;Parent=MsG0580025624.01.T01
Chr5	exon	21418287	21418430	21418287	ID=MsG0580025624.01.T01:exon:23669;Parent=MsG0580025624.01.T01
Chr5	five_prime_UTR	21418287	21418430	21418287	ID=MsG0580025624.01.T01:five_prime_utr;Parent=MsG0580025624.01.T01
Chr5	five_prime_UTR	21417148	21417164	21417148	ID=MsG0580025624.01.T01:five_prime_utr;Parent=MsG0580025624.01.T01
Chr5	CDS	21417095	21417147	21417095	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21416767	21416921	21416767	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21415595	21415882	21415595	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21414783	21414912	21414783	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21413174	21413281	21413174	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21412962	21413064	21412962	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21412700	21412825	21412700	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21411193	21411377	21411193	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	CDS	21410981	21411077	21410981	ID=MsG0580025624.01.T01:cds;Parent=MsG0580025624.01.T01
Chr5	three_prime_UTR	21410950	21410980	21410950	ID=MsG0580025624.01.T01:three_prime_utr;Parent=MsG0580025624.01.T01
Chr5	three_prime_UTR	21410208	21410656	21410208	ID=MsG0580025624.01.T01:three_prime_utr;Parent=MsG0580025624.01.T01

Gene Sequence

>MsG0580025624.01.T01

ATGCCGGATGTTCATACCCTTGTTAATGAATTTTTGAATCAGCTTAAAAAACGTAAAATTGAAGGTTCTCAGGCCACAGCAAAACAGGCAGCAGAGTTGCTTCGGTCTGTGATTTCACAGCAGAGGTTGCCTCAAACACACCAGGCTACAGCTCTGATTAATGCAGTAAGGGCTGTGGGGGAGAAGCTTATCGCTGCTAACCCTGTTGAGCTAGCTGTGGGAAATATTGTGAGGCGTGTTTTGCACATTATAAGAGAGGAGGATCTTTCCCTCGCCACAGCTGCTATAGATGGTTTGGAGTTATCAGCTGTAAGTGACGATGAAGATGATGAGCAGCGAGATGATTATCCTGTTTTATCTGCTGCTGCTGTTGCAGCTGCTGCAAGAAGCACCTTGCGTCCACCATCATTGCAAACTCTTCTAGAGGATACACCTATTTCAGCTGCCATTCCACACACATCTTCTTCGGGGGGTGATTCTGAAGGGAAAAGTAGATCTGTTGATAAGAGTTCAAGAGGTCGAAAGTTGAAGCATGATGTCATTGAAGCAGTTAATGAACTTATTCAAGACATATCTACTTGCTATGAACAAATAGCTGAGCAAGCAGTAGAGCACATTCATCAAAATGAGGTAATATTAACGCTAGGAAGCTCAAAGACCGTGTTGGAATTTCTTTGTGCTGCAAAAGAGAAAAAGAGATCATTTAAGGTCTTTGTTGCTGAAGGTGCCCCAAGATATCAGGGACATCTCCTTGCAAAGGAATTGGCCGCTAGAGGCTTACAAACCACAGTGATTACGGATTCTGCAGTTTTTGCTATGATTTCCCGAGTGAACATGGTTATAGTTGGAGCTCATGCTGTCATGGCTAATGGTGGAGTAATTGCCCCAGTTGGATTAAATATGGTTGCACTTGCAGCTCAAAGGCATGCTGTTCCTTTTGTTGTACTTGCTGGAAGTCACAAGTTGTGCCCTTTATATCCACACAATCCTGAAGTCCTATTGAATGAGCTGAGATCCCCATCTGAGCTACTTGACTTTGGGGAGTTCTCGGATTGCATGGATTCTGCAAGTGGAGGTTCTCTTCATGTCGTTAACCCAACATTCGATTATGTGCCACCAAAACTTGTTAGTCTCTTTATTACCGACACAGGAGGGCATAACCCATCATACATGTACCGGCTCATTGCTGACTACTACTCAGCTGATGATTTGGTGGTGAAACGTAGACCTGCCACCACGAGTTGA

Protein sequence

>MsG0580025624.01.T01

MPDVHTLVNEFLNQLKKRKIEGSQATAKQAAELLRSVISQQRLPQTHQATALINAVRAVGEKLIAANPVELAVGNIVRRVLHIIREEDLSLATAAIDGLELSAVSDDEDDEQRDDYPVLSAAAVAAAARSTLRPPSLQTLLEDTPISAAIPHTSSSGGDSEGKSRSVDKSSRGRKLKHDVIEAVNELIQDISTCYEQIAEQAVEHIHQNEVILTLGSSKTVLEFLCAAKEKKRSFKVFVAEGAPRYQGHLLAKELAARGLQTTVITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDSASGGSLHVVNPTFDYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVKRRPATTS*