Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026149.01.T01 | XP_003613754.1 | 80.952 | 210 | 40 | 0 | 1 | 210 | 1 | 210 | 7.65E-121 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026149.01.T01 | Q9FUT0 | 45.327 | 214 | 113 | 3 | 1 | 210 | 1 | 214 | 7.06E-60 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026149.01.T01 | G7KDY4 | 80.952 | 210 | 40 | 0 | 1 | 210 | 1 | 210 | 3.65e-121 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580026148.01 | MsG0580026149.01 | PPI |
| MsG0580026149.01 | MsG0880047766.01 | PPI |
| MsG0880047767.01 | MsG0580026149.01 | PPI |
| MsG0880047767.01 | MsG0580026149.01 | PPI |
| MsG0880047766.01 | MsG0580026149.01 | PPI |
| MsG0580026301.01 | MsG0580026149.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026149.01.T01 | MTR_5g040430 | 80.952 | 210 | 40 | 0 | 1 | 210 | 1 | 210 | 9.27e-125 | 352 |
| MsG0580026149.01.T01 | MTR_4g019780 | 48.039 | 204 | 100 | 2 | 7 | 210 | 8 | 205 | 1.84e-60 | 189 |
| MsG0580026149.01.T01 | MTR_4g019790 | 40.758 | 211 | 117 | 3 | 1 | 210 | 1 | 204 | 6.73e-56 | 177 |
| MsG0580026149.01.T01 | MTR_7g065600 | 43.128 | 211 | 112 | 3 | 1 | 210 | 1 | 204 | 1.87e-54 | 174 |
| MsG0580026149.01.T01 | MTR_7g065660 | 40.758 | 211 | 117 | 3 | 1 | 210 | 1 | 204 | 8.83e-54 | 172 |
| MsG0580026149.01.T01 | MTR_7g065590 | 41.463 | 205 | 112 | 3 | 7 | 210 | 7 | 204 | 4.71e-53 | 170 |
| MsG0580026149.01.T01 | MTR_7g065290 | 41.395 | 215 | 118 | 3 | 1 | 214 | 1 | 208 | 1.55e-52 | 169 |
| MsG0580026149.01.T01 | MTR_7g065720 | 41.038 | 212 | 116 | 3 | 1 | 210 | 1 | 205 | 1.57e-52 | 169 |
| MsG0580026149.01.T01 | MTR_7g065230 | 42.791 | 215 | 110 | 4 | 1 | 214 | 1 | 203 | 1.63e-52 | 168 |
| MsG0580026149.01.T01 | MTR_7g065750 | 41.509 | 212 | 115 | 4 | 1 | 210 | 1 | 205 | 3.49e-52 | 168 |
| MsG0580026149.01.T01 | MTR_1g090060 | 41.546 | 207 | 117 | 2 | 6 | 212 | 2 | 204 | 1.10e-51 | 166 |
| MsG0580026149.01.T01 | MTR_7g065630 | 41.509 | 212 | 112 | 4 | 1 | 211 | 19 | 219 | 1.52e-51 | 167 |
| MsG0580026149.01.T01 | MTR_3g099757 | 44.554 | 202 | 106 | 3 | 10 | 211 | 8 | 203 | 1.61e-51 | 166 |
| MsG0580026149.01.T01 | MTR_7g065265 | 40.758 | 211 | 117 | 3 | 1 | 210 | 1 | 204 | 4.12e-51 | 165 |
| MsG0580026149.01.T01 | MTR_7g065740 | 38.967 | 213 | 121 | 4 | 1 | 211 | 1 | 206 | 4.51e-51 | 165 |
| MsG0580026149.01.T01 | MTR_7g065270 | 40.284 | 211 | 118 | 3 | 1 | 210 | 1 | 204 | 1.61e-49 | 161 |
| MsG0580026149.01.T01 | MTR_4g059730 | 40.385 | 208 | 118 | 4 | 5 | 211 | 2 | 204 | 6.08e-49 | 159 |
| MsG0580026149.01.T01 | MTR_1g090070 | 39.048 | 210 | 119 | 4 | 4 | 210 | 6 | 209 | 8.84e-49 | 159 |
| MsG0580026149.01.T01 | MTR_6g080440 | 41.463 | 205 | 114 | 2 | 6 | 210 | 2 | 200 | 1.89e-48 | 158 |
| MsG0580026149.01.T01 | MTR_7g065260 | 40.476 | 210 | 119 | 2 | 1 | 210 | 8 | 211 | 4.43e-48 | 157 |
| MsG0580026149.01.T01 | MTR_8g087410 | 41.262 | 206 | 115 | 2 | 5 | 210 | 4 | 203 | 4.52e-47 | 155 |
| MsG0580026149.01.T01 | MTR_1g090100 | 39.512 | 205 | 120 | 2 | 8 | 212 | 3 | 203 | 7.23e-47 | 154 |
| MsG0580026149.01.T01 | MTR_7g065710 | 40.000 | 205 | 111 | 4 | 8 | 211 | 5 | 198 | 1.08e-46 | 154 |
| MsG0580026149.01.T01 | MTR_2g070150 | 37.981 | 208 | 122 | 2 | 5 | 212 | 2 | 202 | 1.47e-46 | 153 |
| MsG0580026149.01.T01 | MTR_7g065640 | 38.863 | 211 | 103 | 4 | 1 | 210 | 1 | 186 | 4.34e-46 | 152 |
| MsG0580026149.01.T01 | MTR_8g087425 | 38.350 | 206 | 121 | 2 | 5 | 210 | 3 | 202 | 1.68e-45 | 150 |
| MsG0580026149.01.T01 | MTR_1g090150 | 38.725 | 204 | 120 | 4 | 7 | 210 | 3 | 201 | 2.46e-45 | 150 |
| MsG0580026149.01.T01 | MTR_1g090090 | 39.024 | 205 | 121 | 2 | 6 | 210 | 2 | 202 | 4.30e-45 | 150 |
| MsG0580026149.01.T01 | MTR_7g065680 | 43.204 | 206 | 105 | 4 | 7 | 211 | 7 | 201 | 1.22e-44 | 148 |
| MsG0580026149.01.T01 | MTR_2g070200 | 37.736 | 212 | 119 | 5 | 5 | 212 | 2 | 204 | 2.03e-44 | 148 |
| MsG0580026149.01.T01 | MTR_1g115195 | 38.462 | 208 | 119 | 5 | 6 | 210 | 2 | 203 | 2.19e-44 | 148 |
| MsG0580026149.01.T01 | MTR_7g065700 | 41.262 | 206 | 109 | 4 | 7 | 211 | 7 | 201 | 3.96e-44 | 147 |
| MsG0580026149.01.T01 | MTR_2g070180 | 36.893 | 206 | 123 | 2 | 5 | 210 | 2 | 200 | 7.07e-44 | 146 |
| MsG0580026149.01.T01 | MTR_2g070130 | 35.714 | 210 | 128 | 2 | 5 | 214 | 2 | 204 | 1.43e-43 | 145 |
| MsG0580026149.01.T01 | MTR_2g070060 | 36.893 | 206 | 123 | 4 | 5 | 210 | 2 | 200 | 2.85e-42 | 142 |
| MsG0580026149.01.T01 | MTR_2g070120 | 38.462 | 208 | 119 | 4 | 5 | 211 | 2 | 201 | 1.21e-41 | 140 |
| MsG0580026149.01.T01 | MTR_2g070140 | 37.500 | 192 | 113 | 2 | 21 | 212 | 2 | 186 | 1.61e-41 | 140 |
| MsG0580026149.01.T01 | MTR_2g070210 | 36.538 | 208 | 123 | 3 | 5 | 210 | 2 | 202 | 1.84e-40 | 137 |
| MsG0580026149.01.T01 | MTR_8g061950 | 37.143 | 210 | 128 | 3 | 6 | 212 | 4 | 212 | 4.27e-40 | 137 |
| MsG0580026149.01.T01 | MTR_5g037380 | 34.123 | 211 | 135 | 3 | 5 | 212 | 3 | 212 | 3.08e-39 | 135 |
| MsG0580026149.01.T01 | MTR_2g070070 | 34.951 | 206 | 127 | 2 | 5 | 210 | 2 | 200 | 1.37e-37 | 130 |
| MsG0580026149.01.T01 | MTR_2g070110 | 36.408 | 206 | 123 | 4 | 5 | 210 | 2 | 199 | 1.86e-37 | 130 |
| MsG0580026149.01.T01 | MTR_3g467430 | 33.333 | 210 | 131 | 3 | 1 | 210 | 5 | 205 | 1.69e-36 | 127 |
| MsG0580026149.01.T01 | MTR_3g467420 | 32.212 | 208 | 134 | 2 | 3 | 210 | 5 | 205 | 4.43e-36 | 126 |
| MsG0580026149.01.T01 | MTR_8g056940 | 35.122 | 205 | 126 | 2 | 5 | 209 | 2 | 199 | 4.72e-36 | 126 |
| MsG0580026149.01.T01 | MTR_5g076900 | 35.294 | 204 | 123 | 4 | 8 | 210 | 7 | 202 | 8.15e-36 | 125 |
| MsG0580026149.01.T01 | MTR_4g124130 | 37.000 | 200 | 100 | 6 | 6 | 195 | 3 | 186 | 1.61e-33 | 120 |
| MsG0580026149.01.T01 | MTR_0186s0030 | 41.727 | 139 | 74 | 1 | 5 | 136 | 2 | 140 | 6.35e-33 | 116 |
| MsG0580026149.01.T01 | MTR_2g072120 | 49.153 | 59 | 30 | 0 | 51 | 109 | 2 | 60 | 2.45e-19 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026149.01.T01 | AT5G62480 | 45.327 | 214 | 113 | 3 | 1 | 210 | 1 | 214 | 7.20e-61 | 191 |
| MsG0580026149.01.T01 | AT1G74590 | 40.865 | 208 | 122 | 1 | 1 | 208 | 1 | 207 | 1.41e-60 | 189 |
| MsG0580026149.01.T01 | AT3G09270 | 41.706 | 211 | 116 | 3 | 1 | 210 | 1 | 205 | 1.44e-51 | 166 |
| MsG0580026149.01.T01 | AT2G29440 | 38.942 | 208 | 120 | 4 | 4 | 210 | 3 | 204 | 1.39e-47 | 156 |
| MsG0580026149.01.T01 | AT2G29490 | 37.915 | 211 | 124 | 3 | 1 | 210 | 1 | 205 | 3.32e-47 | 155 |
| MsG0580026149.01.T01 | AT2G29450 | 40.952 | 210 | 114 | 5 | 4 | 210 | 3 | 205 | 5.53e-47 | 154 |
| MsG0580026149.01.T01 | AT2G29480 | 39.336 | 211 | 121 | 3 | 1 | 210 | 1 | 205 | 9.57e-47 | 154 |
| MsG0580026149.01.T01 | AT2G29460 | 37.915 | 211 | 124 | 3 | 1 | 210 | 1 | 205 | 9.81e-47 | 154 |
| MsG0580026149.01.T01 | AT2G29420 | 35.437 | 206 | 127 | 2 | 5 | 210 | 7 | 206 | 1.29e-46 | 154 |
| MsG0580026149.01.T01 | AT2G29470 | 38.679 | 212 | 122 | 4 | 1 | 210 | 1 | 206 | 3.79e-45 | 150 |
| MsG0580026149.01.T01 | AT5G62480 | 39.252 | 214 | 100 | 4 | 1 | 210 | 1 | 188 | 4.27e-45 | 149 |
| MsG0580026149.01.T01 | AT1G10360 | 37.981 | 208 | 126 | 3 | 5 | 210 | 3 | 209 | 2.00e-44 | 148 |
| MsG0580026149.01.T01 | AT5G62480 | 38.785 | 214 | 100 | 4 | 1 | 210 | 1 | 187 | 2.72e-44 | 147 |
| MsG0580026149.01.T01 | AT1G10370 | 37.441 | 211 | 129 | 3 | 5 | 213 | 3 | 212 | 7.10e-44 | 147 |
| MsG0580026149.01.T01 | AT1G78380 | 35.437 | 206 | 126 | 2 | 5 | 210 | 2 | 200 | 2.99e-43 | 145 |
| MsG0580026149.01.T01 | AT1G78320 | 36.408 | 206 | 124 | 2 | 7 | 212 | 4 | 202 | 3.65e-42 | 142 |
| MsG0580026149.01.T01 | AT1G78340 | 37.430 | 179 | 107 | 1 | 5 | 183 | 2 | 175 | 4.97e-41 | 139 |
| MsG0580026149.01.T01 | AT1G27130 | 34.597 | 211 | 134 | 3 | 4 | 211 | 3 | 212 | 7.64e-41 | 139 |
| MsG0580026149.01.T01 | AT1G17180 | 36.058 | 208 | 126 | 2 | 5 | 212 | 2 | 202 | 1.25e-40 | 138 |
| MsG0580026149.01.T01 | AT1G69930 | 34.928 | 209 | 134 | 2 | 3 | 210 | 8 | 215 | 2.12e-40 | 138 |
| MsG0580026149.01.T01 | AT1G17170 | 36.058 | 208 | 125 | 3 | 5 | 212 | 2 | 201 | 2.57e-39 | 135 |
| MsG0580026149.01.T01 | AT1G78370 | 32.020 | 203 | 131 | 2 | 10 | 212 | 7 | 202 | 7.44e-39 | 134 |
| MsG0580026149.01.T01 | AT1G59670 | 37.619 | 210 | 127 | 4 | 4 | 210 | 3 | 211 | 1.00e-38 | 134 |
| MsG0580026149.01.T01 | AT3G43800 | 33.654 | 208 | 129 | 4 | 7 | 211 | 5 | 206 | 1.17e-37 | 130 |
| MsG0580026149.01.T01 | AT1G59700 | 38.095 | 210 | 126 | 4 | 4 | 210 | 3 | 211 | 1.60e-37 | 130 |
| MsG0580026149.01.T01 | AT1G53680 | 37.383 | 214 | 125 | 3 | 1 | 212 | 1 | 207 | 2.75e-37 | 130 |
| MsG0580026149.01.T01 | AT1G17190 | 34.466 | 206 | 128 | 2 | 7 | 212 | 5 | 203 | 3.13e-37 | 129 |
| MsG0580026149.01.T01 | AT1G27140 | 34.862 | 218 | 125 | 5 | 4 | 211 | 3 | 213 | 1.30e-35 | 126 |
| MsG0580026149.01.T01 | AT1G78360 | 33.971 | 209 | 130 | 3 | 5 | 212 | 2 | 203 | 1.45e-35 | 125 |
| MsG0580026149.01.T01 | AT1G69920 | 31.925 | 213 | 141 | 3 | 2 | 211 | 29 | 240 | 1.96e-35 | 125 |
| MsG0580026149.01.T01 | AT1G78320 | 31.068 | 206 | 108 | 3 | 7 | 212 | 4 | 175 | 6.20e-28 | 104 |
Find 52 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACGCCTTCAAAGCATTTC+AGG | 0.211423 | 5:+31405022 | MsG0580026149.01.T01:CDS |
| AAAGTATGCCCTTCAGTTTA+AGG | 0.223571 | 5:-31402879 | None:intergenic |
| GGTGAATATCTCTATGTTTA+AGG | 0.241976 | 5:-31405048 | None:intergenic |
| TTGAATACATCGATGAGATT+TGG | 0.246469 | 5:+31403025 | MsG0580026149.01.T01:CDS |
| CTACCTTTGTGCAAGAGAAT+TGG | 0.330326 | 5:-31402976 | None:intergenic |
| AAGTTGAGTTGTTGGGATAC+TGG | 0.342699 | 5:+31402824 | MsG0580026149.01.T01:CDS |
| TGAATACATCGATGAGATTT+GGG | 0.346681 | 5:+31403026 | MsG0580026149.01.T01:CDS |
| TTCCACGTCTCTTATAGCTT+TGG | 0.365952 | 5:-31404889 | None:intergenic |
| GTACAATCCTGTCAATAAAA+AGG | 0.369292 | 5:+31402951 | MsG0580026149.01.T01:CDS |
| TACCTTTGTGCAAGAGAATT+GGG | 0.387369 | 5:-31402975 | None:intergenic |
| AAGTATGCCCTTCAGTTTAA+GGG | 0.395772 | 5:-31402878 | None:intergenic |
| ATGCTTGGGGTGTTTGAAGA+AGG | 0.404863 | 5:+31404915 | MsG0580026149.01.T01:CDS |
| GAGACGTGGAAGAGATGCTT+GGG | 0.429311 | 5:+31404901 | MsG0580026149.01.T01:CDS |
| AACTAGTGAAGTTGAGTTGT+TGG | 0.430217 | 5:+31402816 | MsG0580026149.01.T01:CDS |
| GGATCCTCTAGCAACAGTTT+AGG | 0.431062 | 5:-31403057 | None:intergenic |
| GTGTTTCACCATTGAAGAAT+CGG | 0.439108 | 5:-31404965 | None:intergenic |
| GATCGATTCCGATTCTTCAA+TGG | 0.443493 | 5:+31404957 | MsG0580026149.01.T01:CDS |
| TACTTTGGTGCAGTAAGAGC+TGG | 0.444055 | 5:-31402848 | None:intergenic |
| TACTTTCTCATCAAAGTAGT+TGG | 0.446912 | 5:-31403109 | None:intergenic |
| TTTAAGGGCTAGTTCTACTT+TGG | 0.449452 | 5:-31402863 | None:intergenic |
| CACAAGAGGATGTTCCTTCA+AGG | 0.452149 | 5:-31405108 | None:intergenic |
| TTCATCATAACCAATGGATA+AGG | 0.456780 | 5:+31402792 | None:intergenic |
| CGGACTCTGGCCCTTTGATA+AGG | 0.457179 | 5:-31403078 | None:intergenic |
| GGCCTCCTGAAATGCTTTGA+AGG | 0.465511 | 5:-31405027 | None:intergenic |
| ACTAGTGAAGTTGAGTTGTT+GGG | 0.478212 | 5:+31402817 | MsG0580026149.01.T01:CDS |
| TCACTAGTTTCCTTATCCAT+TGG | 0.481224 | 5:-31402802 | None:intergenic |
| AGTTGAGTTGTTGGGATACT+GGG | 0.496161 | 5:+31402825 | MsG0580026149.01.T01:CDS |
| TTTGAAGAAGGGGTCAAGGA+AGG | 0.500006 | 5:+31404927 | MsG0580026149.01.T01:CDS |
| TGCTTGGGGTGTTTGAAGAA+GGG | 0.517114 | 5:+31404916 | MsG0580026149.01.T01:CDS |
| TATGTGGGTGAATGCCTTGA+AGG | 0.518165 | 5:+31405094 | MsG0580026149.01.T01:CDS |
| GGTGTTTGAAGAAGGGGTCA+AGG | 0.531277 | 5:+31404923 | MsG0580026149.01.T01:CDS |
| AGAGACGTGGAAGAGATGCT+TGG | 0.540427 | 5:+31404900 | MsG0580026149.01.T01:CDS |
| ACTTGTCATGAGGAGGAACT+AGG | 0.550330 | 5:-31405143 | None:intergenic |
| GCTTGGGGTGTTTGAAGAAG+GGG | 0.554676 | 5:+31404917 | MsG0580026149.01.T01:CDS |
| GCTAGAGGATCCTTATCAAA+GGG | 0.559619 | 5:+31403068 | MsG0580026149.01.T01:CDS |
| ACCACAATGTCAAGAAGTCC+CGG | 0.563066 | 5:-31404987 | None:intergenic |
| TGCTAGAGGATCCTTATCAA+AGG | 0.574825 | 5:+31403067 | MsG0580026149.01.T01:CDS |
| AGAACTAGCCCTTAAACTGA+AGG | 0.581754 | 5:+31402870 | MsG0580026149.01.T01:CDS |
| CGCCTTCAAAGCATTTCAGG+AGG | 0.583204 | 5:+31405025 | MsG0580026149.01.T01:CDS |
| TTCTTCAATGGTGAAACACC+GGG | 0.597186 | 5:+31404969 | MsG0580026149.01.T01:CDS |
| GAAGGAACATCCTCTTGTGA+AGG | 0.600726 | 5:+31405112 | MsG0580026149.01.T01:CDS |
| ACCGGGACTTCTTGACATTG+TGG | 0.607916 | 5:+31404986 | MsG0580026149.01.T01:CDS |
| GAACTAGCCCTTAAACTGAA+GGG | 0.612731 | 5:+31402871 | MsG0580026149.01.T01:CDS |
| ATTCTTCAATGGTGAAACAC+CGG | 0.616066 | 5:+31404968 | MsG0580026149.01.T01:CDS |
| GCTACCAACTTGTCATGAGG+AGG | 0.616255 | 5:-31405150 | None:intergenic |
| TAGTCCTAAACTGTTGCTAG+AGG | 0.617440 | 5:+31403053 | MsG0580026149.01.T01:CDS |
| AACCAAAGCTATAAGAGACG+TGG | 0.619859 | 5:+31404887 | MsG0580026149.01.T01:CDS |
| TTAGCTACCAACTTGTCATG+AGG | 0.626491 | 5:-31405153 | None:intergenic |
| GGAAGTGTCTCCTTCACAAG+AGG | 0.650592 | 5:-31405122 | None:intergenic |
| GTCCCAATTCTCTTGCACAA+AGG | 0.658156 | 5:+31402973 | MsG0580026149.01.T01:CDS |
| CATACTTTACAAGTATGTCG+AGG | 0.702253 | 5:+31402894 | MsG0580026149.01.T01:CDS |
| AGACGTGGAAGAGATGCTTG+GGG | 0.765672 | 5:+31404902 | MsG0580026149.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGAAAATAAATAGAAAA+AGG | - | Chr5:31403496-31403515 | None:intergenic | 10.0% |
| !!! | AAAAATTAAACATTGATTTT+AGG | - | Chr5:31404216-31404235 | None:intergenic | 10.0% |
| !! | AATATAAAACACTAACTTAT+TGG | - | Chr5:31404078-31404097 | None:intergenic | 15.0% |
| !! | ATATAAAACACTAACTTATT+GGG | - | Chr5:31404077-31404096 | None:intergenic | 15.0% |
| !! | TGATTAAAACTTAAAACAAT+AGG | - | Chr5:31404389-31404408 | None:intergenic | 15.0% |
| !!! | ATTTTAAAATCAAACAAATC+AGG | - | Chr5:31403899-31403918 | None:intergenic | 15.0% |
| !! | AAGTATCTTATCAATATACA+TGG | + | Chr5:31403745-31403764 | MsG0580026149.01.T01:intron | 20.0% |
| !! | ACTTAAAATTGATGCATTAA+CGG | - | Chr5:31403729-31403748 | None:intergenic | 20.0% |
| !! | TAGTATTAAAATTGGCTAAT+GGG | - | Chr5:31404051-31404070 | None:intergenic | 20.0% |
| !! | TTTATCATATTGAATGTGAA+GGG | + | Chr5:31403544-31403563 | MsG0580026149.01.T01:intron | 20.0% |
| !!! | TTTGTTTGATTTTAAAATCC+AGG | + | Chr5:31403901-31403920 | MsG0580026149.01.T01:intron | 20.0% |
| !!! | TTTTATCATATTGAATGTGA+AGG | + | Chr5:31403543-31403562 | MsG0580026149.01.T01:intron | 20.0% |
| ! | AAAAATCACCACTAAAATAC+GGG | + | Chr5:31403951-31403970 | MsG0580026149.01.T01:intron | 25.0% |
| ! | ACACATGCATAACAAAAAAA+AGG | + | Chr5:31403174-31403193 | MsG0580026149.01.T01:intron | 25.0% |
| ! | ACCTAAACCAATAAGTTAAA+CGG | - | Chr5:31403802-31403821 | None:intergenic | 25.0% |
| ! | ACTAACTAGTAATAGTGATA+GGG | + | Chr5:31403340-31403359 | MsG0580026149.01.T01:intron | 25.0% |
| ! | CACATGCATAACAAAAAAAA+GGG | + | Chr5:31403175-31403194 | MsG0580026149.01.T01:intron | 25.0% |
| ! | GAAAAATCACCACTAAAATA+CGG | + | Chr5:31403950-31403969 | MsG0580026149.01.T01:intron | 25.0% |
| ! | GTAGTATTAAAATTGGCTAA+TGG | - | Chr5:31404052-31404071 | None:intergenic | 25.0% |
| ! | TTCACCCACATAAAAAAATT+CGG | - | Chr5:31405086-31405105 | None:intergenic | 25.0% |
| !! | AAAAAAATTCGGCATCTTTT+CGG | - | Chr5:31405075-31405094 | None:intergenic | 25.0% |
| !! | AAAAGGGTTGATTAATTAGA+CGG | + | Chr5:31403191-31403210 | MsG0580026149.01.T01:intron | 25.0% |
| !! | AACATTTTCAAAACTAACGT+AGG | - | Chr5:31404441-31404460 | None:intergenic | 25.0% |
| !! | TTGGGTTGTAGTATTAAAAT+TGG | - | Chr5:31404059-31404078 | None:intergenic | 25.0% |
| !!! | ATTGATTTTAGGCAAGTTTA+CGG | - | Chr5:31404205-31404224 | None:intergenic | 25.0% |
| !!! | TTCAACCCATCTATTTTAAT+TGG | + | Chr5:31404284-31404303 | MsG0580026149.01.T01:intron | 25.0% |
| AAAATCACCACTAAAATACG+GGG | + | Chr5:31403952-31403971 | MsG0580026149.01.T01:intron | 30.0% | |
| AACGGTTAATTTAACGTGTA+AGG | - | Chr5:31403711-31403730 | None:intergenic | 30.0% | |
| AGTAATAGTGATAGGGTTAT+GGG | + | Chr5:31403347-31403366 | MsG0580026149.01.T01:intron | 30.0% | |
| ATGGAGAAGAAAATTTAAGC+GGG | + | Chr5:31403287-31403306 | MsG0580026149.01.T01:intron | 30.0% | |
| CATGGAGAAGAAAATTTAAG+CGG | + | Chr5:31403286-31403305 | MsG0580026149.01.T01:intron | 30.0% | |
| CCTAAACCAATAAGTTAAAC+GGG | - | Chr5:31403801-31403820 | None:intergenic | 30.0% | |
| GACTAACTAGTAATAGTGAT+AGG | + | Chr5:31403339-31403358 | MsG0580026149.01.T01:intron | 30.0% | |
| GGTGAATATCTCTATGTTTA+AGG | - | Chr5:31405051-31405070 | None:intergenic | 30.0% | |
| GTACAATCCTGTCAATAAAA+AGG | + | Chr5:31402951-31402970 | MsG0580026149.01.T01:CDS | 30.0% | |
| TAATCTATTTGTCATGCTGT+TGG | + | Chr5:31403423-31403442 | MsG0580026149.01.T01:intron | 30.0% | |
| TACTTTCTCATCAAAGTAGT+TGG | - | Chr5:31403112-31403131 | None:intergenic | 30.0% | |
| TAGGTATAGATGTGTCAAAA+CGG | - | Chr5:31404370-31404389 | None:intergenic | 30.0% | |
| TAGTAATAGTGATAGGGTTA+TGG | + | Chr5:31403346-31403365 | MsG0580026149.01.T01:intron | 30.0% | |
| TGAATACATCGATGAGATTT+GGG | + | Chr5:31403026-31403045 | MsG0580026149.01.T01:CDS | 30.0% | |
| TTGAATACATCGATGAGATT+TGG | + | Chr5:31403025-31403044 | MsG0580026149.01.T01:CDS | 30.0% | |
| ! | AAAGGGTTGATTAATTAGAC+GGG | + | Chr5:31403192-31403211 | MsG0580026149.01.T01:intron | 30.0% |
| ! | TTGATTTTAGGCAAGTTTAC+GGG | - | Chr5:31404204-31404223 | None:intergenic | 30.0% |
| !! | GAATGATAGTCTTAGCTTTT+TGG | - | Chr5:31403224-31403243 | None:intergenic | 30.0% |
| !!! | AGATGCCGAATTTTTTTATG+TGG | + | Chr5:31405078-31405097 | MsG0580026149.01.T01:CDS | 30.0% |
| !!! | GATGCCGAATTTTTTTATGT+GGG | + | Chr5:31405079-31405098 | MsG0580026149.01.T01:CDS | 30.0% |
| AAAGTATGCCCTTCAGTTTA+AGG | - | Chr5:31402882-31402901 | None:intergenic | 35.0% | |
| AACAGGATGAACAGTACATA+GGG | + | Chr5:31403451-31403470 | MsG0580026149.01.T01:intron | 35.0% | |
| AACCAATAAGTTAAACGGGT+TGG | - | Chr5:31403797-31403816 | None:intergenic | 35.0% | |
| AACTTGTCTCAAACAAGTTG+AGG | - | Chr5:31404313-31404332 | None:intergenic | 35.0% | |
| AAGTATGCCCTTCAGTTTAA+GGG | - | Chr5:31402881-31402900 | None:intergenic | 35.0% | |
| AGGTATAGATGTGTCAAAAC+GGG | - | Chr5:31404369-31404388 | None:intergenic | 35.0% | |
| ATTCTTCAATGGTGAAACAC+CGG | + | Chr5:31404968-31404987 | MsG0580026149.01.T01:CDS | 35.0% | |
| CATACTTTACAAGTATGTCG+AGG | + | Chr5:31402894-31402913 | MsG0580026149.01.T01:CDS | 35.0% | |
| GTAATAGTGATAGGGTTATG+GGG | + | Chr5:31403348-31403367 | MsG0580026149.01.T01:intron | 35.0% | |
| GTGTTTCACCATTGAAGAAT+CGG | - | Chr5:31404968-31404987 | None:intergenic | 35.0% | |
| GTTGCTTGTGTAATGATTGT+TGG | + | Chr5:31404120-31404139 | MsG0580026149.01.T01:intron | 35.0% | |
| TAAAAGACTTATGTGTGACG+TGG | + | Chr5:31403394-31403413 | MsG0580026149.01.T01:intron | 35.0% | |
| TACCTTTGTGCAAGAGAATT+GGG | - | Chr5:31402978-31402997 | None:intergenic | 35.0% | |
| TACTAGTTAGTCATCTGTGT+TGG | - | Chr5:31403331-31403350 | None:intergenic | 35.0% | |
| TCATGTGTTTCTCAAATTCC+TGG | - | Chr5:31403922-31403941 | None:intergenic | 35.0% | |
| TGTGCTTTCTCTTCATTGTA+GGG | - | Chr5:31403637-31403656 | None:intergenic | 35.0% | |
| TTCATGCTCATCAAACAACA+AGG | - | Chr5:31403251-31403270 | None:intergenic | 35.0% | |
| TTGTGCTTTCTCTTCATTGT+AGG | - | Chr5:31403638-31403657 | None:intergenic | 35.0% | |
| ! | AACTAGTGAAGTTGAGTTGT+TGG | + | Chr5:31402816-31402835 | MsG0580026149.01.T01:CDS | 35.0% |
| ! | ACCGCATTTTCAAAACACAA+GGG | + | Chr5:31404480-31404499 | MsG0580026149.01.T01:intron | 35.0% |
| ! | ACTAGTGAAGTTGAGTTGTT+GGG | + | Chr5:31402817-31402836 | MsG0580026149.01.T01:CDS | 35.0% |
| ! | ATGAAGAGAAAGCACAAGAT+CGG | + | Chr5:31403641-31403660 | MsG0580026149.01.T01:intron | 35.0% |
| ! | ATTGGGACCTTTTTATTGAC+AGG | - | Chr5:31402961-31402980 | None:intergenic | 35.0% |
| ! | TACCGCATTTTCAAAACACA+AGG | + | Chr5:31404479-31404498 | MsG0580026149.01.T01:intron | 35.0% |
| ! | TCAACTTGTTTGAGACAAGT+TGG | + | Chr5:31404312-31404331 | MsG0580026149.01.T01:intron | 35.0% |
| !! | CCCGTTTAACTTATTGGTTT+AGG | + | Chr5:31403798-31403817 | MsG0580026149.01.T01:intron | 35.0% |
| !! | TTAGTTTGTCCTTCTCTCTT+AGG | + | Chr5:31403855-31403874 | MsG0580026149.01.T01:intron | 35.0% |
| !! | TTTAAGGGCTAGTTCTACTT+TGG | - | Chr5:31402866-31402885 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGAAAATGCGGT+AGG | - | Chr5:31404480-31404499 | None:intergenic | 35.0% |
| AACCAAAGCTATAAGAGACG+TGG | + | Chr5:31404887-31404906 | MsG0580026149.01.T01:CDS | 40.0% | |
| AAGTCAATCTGTCAAGCGAT+AGG | + | Chr5:31404249-31404268 | MsG0580026149.01.T01:intron | 40.0% | |
| ACAAGGGGAAGAGATATTGT+TGG | + | Chr5:31404496-31404515 | MsG0580026149.01.T01:intron | 40.0% | |
| AGAACTAGCCCTTAAACTGA+AGG | + | Chr5:31402870-31402889 | MsG0580026149.01.T01:CDS | 40.0% | |
| AGGCGGCCAATTAAAATAGA+TGG | - | Chr5:31404293-31404312 | None:intergenic | 40.0% | |
| CAAAGTAGTTGGCCCAAAAA+CGG | - | Chr5:31403101-31403120 | None:intergenic | 40.0% | |
| CAACAGGATGAACAGTACAT+AGG | + | Chr5:31403450-31403469 | MsG0580026149.01.T01:intron | 40.0% | |
| CTACCTTTGTGCAAGAGAAT+TGG | - | Chr5:31402979-31402998 | None:intergenic | 40.0% | |
| CTATTTGTCATGCTGTTGGT+GGG | + | Chr5:31403427-31403446 | MsG0580026149.01.T01:intron | 40.0% | |
| GAACTAGCCCTTAAACTGAA+GGG | + | Chr5:31402871-31402890 | MsG0580026149.01.T01:CDS | 40.0% | |
| GCTAGAGGATCCTTATCAAA+GGG | + | Chr5:31403068-31403087 | MsG0580026149.01.T01:CDS | 40.0% | |
| GGCGGCCAATTAAAATAGAT+GGG | - | Chr5:31404292-31404311 | None:intergenic | 40.0% | |
| GGTTTAGGTGAGATACATTG+AGG | + | Chr5:31403813-31403832 | MsG0580026149.01.T01:intron | 40.0% | |
| TAGTCCTAAACTGTTGCTAG+AGG | + | Chr5:31403053-31403072 | MsG0580026149.01.T01:CDS | 40.0% | |
| TCTATTTGTCATGCTGTTGG+TGG | + | Chr5:31403426-31403445 | MsG0580026149.01.T01:intron | 40.0% | |
| TGCTAGAGGATCCTTATCAA+AGG | + | Chr5:31403067-31403086 | MsG0580026149.01.T01:CDS | 40.0% | |
| TTCCACGTCTCTTATAGCTT+TGG | - | Chr5:31404892-31404911 | None:intergenic | 40.0% | |
| TTCTTCAATGGTGAAACACC+GGG | + | Chr5:31404969-31404988 | MsG0580026149.01.T01:CDS | 40.0% | |
| ! | AAAATTCGGCATCTTTTCGG+AGG | - | Chr5:31405072-31405091 | None:intergenic | 40.0% |
| ! | AAAATTTAAGCGGGTGCTGT+TGG | + | Chr5:31403296-31403315 | MsG0580026149.01.T01:intron | 40.0% |
| ! | AAGTTGAGTTGTTGGGATAC+TGG | + | Chr5:31402824-31402843 | MsG0580026149.01.T01:CDS | 40.0% |
| ! | AGTTGAGTTGTTGGGATACT+GGG | + | Chr5:31402825-31402844 | MsG0580026149.01.T01:CDS | 40.0% |
| ! | CCGCATTTTCAAAACACAAG+GGG | + | Chr5:31404481-31404500 | MsG0580026149.01.T01:intron | 40.0% |
| ! | GATCGATTCCGATTCTTCAA+TGG | + | Chr5:31404957-31404976 | MsG0580026149.01.T01:CDS | 40.0% |
| ! | TTACGCCTTCAAAGCATTTC+AGG | + | Chr5:31405022-31405041 | MsG0580026149.01.T01:CDS | 40.0% |
| ! | TTGTCTCAAACAAGTTGAGG+CGG | - | Chr5:31404310-31404329 | None:intergenic | 40.0% |
| !! | TTTGAGACAAGTTGGTTGCA+TGG | + | Chr5:31404320-31404339 | MsG0580026149.01.T01:intron | 40.0% |
| !!! | CCCCTTGTGTTTTGAAAATG+CGG | - | Chr5:31404484-31404503 | None:intergenic | 40.0% |
| ACCACAATGTCAAGAAGTCC+CGG | - | Chr5:31404990-31405009 | None:intergenic | 45.0% | |
| CACAAGAGGATGTTCCTTCA+AGG | - | Chr5:31405111-31405130 | None:intergenic | 45.0% | |
| GAAGGAACATCCTCTTGTGA+AGG | + | Chr5:31405112-31405131 | MsG0580026149.01.T01:CDS | 45.0% | |
| GAAGTTTCTCGACTGGATCA+TGG | + | Chr5:31403268-31403287 | MsG0580026149.01.T01:intron | 45.0% | |
| GGATCCTCTAGCAACAGTTT+AGG | - | Chr5:31403060-31403079 | None:intergenic | 45.0% | |
| GTCCCAATTCTCTTGCACAA+AGG | + | Chr5:31402973-31402992 | MsG0580026149.01.T01:CDS | 45.0% | |
| TATGTGGGTGAATGCCTTGA+AGG | + | Chr5:31405094-31405113 | MsG0580026149.01.T01:CDS | 45.0% | |
| TGAGCATGAAGTTTCTCGAC+TGG | + | Chr5:31403261-31403280 | MsG0580026149.01.T01:intron | 45.0% | |
| TTTGAAGAAGGGGTCAAGGA+AGG | + | Chr5:31404927-31404946 | MsG0580026149.01.T01:CDS | 45.0% | |
| ! | ATGCTTGGGGTGTTTGAAGA+AGG | + | Chr5:31404915-31404934 | MsG0580026149.01.T01:CDS | 45.0% |
| ! | CGGGTAAACTCGTTCCATTT+TGG | - | Chr5:31404350-31404369 | None:intergenic | 45.0% |
| ! | GGCCAACCCGTTTAACTTAT+TGG | + | Chr5:31403792-31403811 | MsG0580026149.01.T01:intron | 45.0% |
| ! | TACTTTGGTGCAGTAAGAGC+TGG | - | Chr5:31402851-31402870 | None:intergenic | 45.0% |
| ! | TGCTTGGGGTGTTTGAAGAA+GGG | + | Chr5:31404916-31404935 | MsG0580026149.01.T01:CDS | 45.0% |
| !! | AGACAAGTTGGTTGCATGGT+TGG | + | Chr5:31404324-31404343 | MsG0580026149.01.T01:intron | 45.0% |
| !! | CTATGCACCCCGTATTTTAG+TGG | - | Chr5:31403962-31403981 | None:intergenic | 45.0% |
| ACCGGGACTTCTTGACATTG+TGG | + | Chr5:31404986-31405005 | MsG0580026149.01.T01:CDS | 50.0% | |
| AGACGTGGAAGAGATGCTTG+GGG | + | Chr5:31404902-31404921 | MsG0580026149.01.T01:CDS | 50.0% | |
| AGAGACGTGGAAGAGATGCT+TGG | + | Chr5:31404900-31404919 | MsG0580026149.01.T01:CDS | 50.0% | |
| GAGACGTGGAAGAGATGCTT+GGG | + | Chr5:31404901-31404920 | MsG0580026149.01.T01:CDS | 50.0% | |
| GCACAACGACCTAAGAGAGA+AGG | - | Chr5:31403867-31403886 | None:intergenic | 50.0% | |
| GGCCTCCTGAAATGCTTTGA+AGG | - | Chr5:31405030-31405049 | None:intergenic | 50.0% | |
| GGTGTTTGAAGAAGGGGTCA+AGG | + | Chr5:31404923-31404942 | MsG0580026149.01.T01:CDS | 50.0% | |
| TACGGGGTGCATAGAGTAGT+TGG | + | Chr5:31403968-31403987 | MsG0580026149.01.T01:intron | 50.0% | |
| ! | AAAGGGCCAGAGTCCGTTTT+TGG | + | Chr5:31403085-31403104 | MsG0580026149.01.T01:CDS | 50.0% |
| ! | CGCCTTCAAAGCATTTCAGG+AGG | + | Chr5:31405025-31405044 | MsG0580026149.01.T01:CDS | 50.0% |
| ! | GCTTGGGGTGTTTGAAGAAG+GGG | + | Chr5:31404917-31404936 | MsG0580026149.01.T01:CDS | 50.0% |
| ! | GGTTGCATGGTTGGCCAAAA+TGG | + | Chr5:31404333-31404352 | MsG0580026149.01.T01:intron | 50.0% |
| !! | AAGGGCCAGAGTCCGTTTTT+GGG | + | Chr5:31403086-31403105 | MsG0580026149.01.T01:CDS | 50.0% |
| !! | ATTTAAGCGGGTGCTGTTGG+AGG | + | Chr5:31403299-31403318 | MsG0580026149.01.T01:intron | 50.0% |
| !! | GGAAGTGTCTCCTTCACAAG+AGG | - | Chr5:31405125-31405144 | None:intergenic | 50.0% |
| CGGACTCTGGCCCTTTGATA+AGG | - | Chr5:31403081-31403100 | None:intergenic | 55.0% | |
| ! | GTTGGCCCAAAAACGGACTC+TGG | - | Chr5:31403094-31403113 | None:intergenic | 55.0% |
| ! | TCATGCTGTTGGTGGGCAAC+AGG | + | Chr5:31403434-31403453 | MsG0580026149.01.T01:intron | 55.0% |
| !! | AGTTAAACGGGTTGGCCTGC+TGG | - | Chr5:31403789-31403808 | None:intergenic | 55.0% |
| !! | GTTAAACGGGTTGGCCTGCT+GGG | - | Chr5:31403788-31403807 | None:intergenic | 55.0% |
| !! | TTAAACGGGTTGGCCTGCTG+GGG | - | Chr5:31403787-31403806 | None:intergenic | 55.0% |
| CAAACCAGACTGACCCCAGC+AGG | + | Chr5:31403771-31403790 | MsG0580026149.01.T01:intron | 60.0% | |
| TTGGCCTGCTGGGGTCAGTC+TGG | - | Chr5:31403778-31403797 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 31402805 | 31405160 | 31402805 | ID=MsG0580026149.01;Name=MsG0580026149.01 |
| Chr5 | mRNA | 31402805 | 31405160 | 31402805 | ID=MsG0580026149.01.T01;Parent=MsG0580026149.01;Name=MsG0580026149.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|214 |
| Chr5 | exon | 31402805 | 31403128 | 31402805 | ID=MsG0580026149.01.T01:exon:24868;Parent=MsG0580026149.01.T01 |
| Chr5 | exon | 31404840 | 31405160 | 31404840 | ID=MsG0580026149.01.T01:exon:24869;Parent=MsG0580026149.01.T01 |
| Chr5 | CDS | 31402805 | 31403128 | 31402805 | ID=MsG0580026149.01.T01:cds;Parent=MsG0580026149.01.T01 |
| Chr5 | CDS | 31404840 | 31405160 | 31404840 | ID=MsG0580026149.01.T01:cds;Parent=MsG0580026149.01.T01 |
| Gene Sequence |
| Protein sequence |
