Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026719.01.T01 | XP_003614113.1 | 95.859 | 483 | 20 | 0 | 1 | 483 | 26 | 508 | 0 | 953 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026719.01.T01 | O04862 | 91.909 | 482 | 39 | 0 | 1 | 482 | 26 | 507 | 0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026719.01.T01 | G7JY17 | 95.859 | 483 | 20 | 0 | 1 | 483 | 26 | 508 | 0.0 | 953 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048978.01 | MsG0580026719.01 | 0.800198 | 1.612727e-48 | 7.463469e-46 |
| MsG0180004957.01 | MsG0580026719.01 | 0.804515 | 2.081868e-49 | 1.075494e-46 |
| MsG0380012444.01 | MsG0580026719.01 | 0.806468 | 8.105601e-50 | 4.402982e-47 |
| MsG0380016362.01 | MsG0580026719.01 | 0.814263 | 1.684036e-51 | 1.124626e-48 |
| MsG0580026486.01 | MsG0580026719.01 | 0.959655 | 1.107294e-117 | 4.483434e-112 |
| MsG0580026719.01 | MsG0780040283.01 | 0.813785 | 2.146761e-51 | 1.415154e-48 |
| MsG0580026719.01 | MsG0780040804.01 | 0.811883 | 5.601437e-51 | 3.508287e-48 |
| MsG0580026719.01 | MsG0880044715.01 | 0.806802 | 6.891649e-50 | 3.775702e-47 |
| MsG0580026719.01 | MsG0880045188.01 | 0.810649 | 1.037756e-50 | 6.290837e-48 |
| MsG0280007783.01 | MsG0580026719.01 | 0.801428 | 9.045458e-49 | 4.318680e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580026719.01 | MsG0180002677.01 | PPI |
| MsG0580026719.01 | MsG0580026486.01 | PPI |
| MsG0580026719.01 | MsG0580026486.01 | PPI |
| MsG0580026719.01 | MsG0580026486.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026719.01.T01 | MTR_5g044980 | 95.859 | 483 | 20 | 0 | 1 | 483 | 26 | 508 | 0.0 | 953 |
| MsG0580026719.01.T01 | MTR_0076s0050 | 57.609 | 92 | 35 | 3 | 75 | 165 | 78 | 166 | 2.25e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026719.01.T01 | AT4G30000 | 69.639 | 471 | 143 | 0 | 12 | 482 | 80 | 550 | 0.0 | 715 |
| MsG0580026719.01.T01 | AT4G30000 | 69.593 | 467 | 142 | 0 | 12 | 478 | 80 | 546 | 0.0 | 705 |
| MsG0580026719.01.T01 | AT1G69190 | 68.790 | 471 | 143 | 4 | 16 | 482 | 9 | 479 | 0.0 | 681 |
Find 122 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGATTCAAATATGTTTA+AGG | 0.171592 | 5:-42806608 | MsG0580026719.01.T01:CDS |
| TGCAAACATTATCATATTTC+AGG | 0.184077 | 5:+42806509 | None:intergenic |
| CAGTACCTCATGAAAGAATT+TGG | 0.210934 | 5:-42807167 | MsG0580026719.01.T01:CDS |
| GGCCCCTTTGATGGATTTAC+TGG | 0.232315 | 5:-42807127 | MsG0580026719.01.T01:CDS |
| TCTCATGCTCCTATACTAAT+TGG | 0.273694 | 5:-42806307 | MsG0580026719.01.T01:CDS |
| ACATACCTTCCTCTCCAATA+AGG | 0.288708 | 5:+42807007 | None:intergenic |
| TTAGGTGGAGAATCCCTTAT+TGG | 0.301459 | 5:-42807021 | MsG0580026719.01.T01:CDS |
| GAAATCTCTTGTCTAATATC+AGG | 0.302936 | 5:+42806349 | None:intergenic |
| TTGCAAATGTCTTGCTTGAT+TGG | 0.312396 | 5:-42806969 | MsG0580026719.01.T01:CDS |
| ATTATTATGGACCCTGGAAT+TGG | 0.347226 | 5:-42806418 | MsG0580026719.01.T01:CDS |
| CCCGGCATGGAGGATTATTA+TGG | 0.354512 | 5:-42806431 | MsG0580026719.01.T01:CDS |
| TGACTTTCTCATCAATTTCA+AGG | 0.357624 | 5:+42807434 | None:intergenic |
| CTTGAAGGTCCAATTAGTAT+AGG | 0.358491 | 5:+42806298 | None:intergenic |
| TGAAGTTCAACAGAGGAGTT+TGG | 0.374311 | 5:+42807528 | None:intergenic |
| TGAGGAAGTAGTGATTGCTT+TGG | 0.379928 | 5:-42807496 | MsG0580026719.01.T01:CDS |
| GAGGAAGTAGTGATTGCTTT+GGG | 0.382617 | 5:-42807495 | MsG0580026719.01.T01:CDS |
| TTCTTTGAGAATCCAATTCC+AGG | 0.387675 | 5:+42806406 | None:intergenic |
| CATACCTTCCTCTCCAATAA+GGG | 0.394402 | 5:+42807008 | None:intergenic |
| TGGGCCGTACTGACGGTATA+AGG | 0.399861 | 5:-42807260 | MsG0580026719.01.T01:CDS |
| TGCTGTTACTGCCGGTGTGT+TGG | 0.407103 | 5:-42806209 | MsG0580026719.01.T01:CDS |
| TTACTGCCGGTGTGTTGGGT+GGG | 0.409196 | 5:-42806204 | MsG0580026719.01.T01:CDS |
| GCTGTTACTGCCGGTGTGTT+GGG | 0.411646 | 5:-42806208 | MsG0580026719.01.T01:CDS |
| TTCAAATATGTTTAAGGTCA+TGG | 0.420172 | 5:-42806602 | MsG0580026719.01.T01:CDS |
| CTTATAAACGATGTATCTGC+TGG | 0.432582 | 5:-42806634 | MsG0580026719.01.T01:CDS |
| GTATTGACATTACAGCTTCC+AGG | 0.432692 | 5:+42806737 | None:intergenic |
| GAAAACTGAAGACAATTTAG+AGG | 0.439828 | 5:-42806386 | MsG0580026719.01.T01:CDS |
| TTGAAATTGATGAGAAAGTC+AGG | 0.441280 | 5:-42807432 | MsG0580026719.01.T01:CDS |
| AGTACCTCATGAAAGAATTT+GGG | 0.441987 | 5:-42807166 | MsG0580026719.01.T01:CDS |
| CATCAGAAGCAGTGCGCAGA+GGG | 0.452701 | 5:-42806663 | MsG0580026719.01.T01:CDS |
| GACATTACAGCTTCCAGGAC+AGG | 0.454459 | 5:+42806742 | None:intergenic |
| TTAAGCTTTGCGATGCAATT+CGG | 0.456357 | 5:-42806135 | MsG0580026719.01.T01:CDS |
| TGGTCCAAGGCCAATGGACT+TGG | 0.458334 | 5:-42807235 | MsG0580026719.01.T01:CDS |
| GGCAGAAATGTCGGGAATCC+CGG | 0.460456 | 5:-42806449 | MsG0580026719.01.T01:CDS |
| TTCCCAGTAAATCCATCAAA+GGG | 0.469536 | 5:+42807124 | None:intergenic |
| GGTGCTGATATAATTGATAT+CGG | 0.477866 | 5:-42806829 | MsG0580026719.01.T01:CDS |
| CGATAGACTACAAAACTTCA+AGG | 0.479819 | 5:-42807460 | MsG0580026719.01.T01:CDS |
| ATGTCCAAGTCCATTGGCCT+TGG | 0.480285 | 5:+42807231 | None:intergenic |
| TCATCATTCTGCATTGTACA+AGG | 0.485422 | 5:+42806535 | None:intergenic |
| ATCTCTGTCGAAGAAGAGTT+AGG | 0.485920 | 5:-42806775 | MsG0580026719.01.T01:CDS |
| CCATGATGCATTTAGTCCAC+CGG | 0.486955 | 5:+42807050 | None:intergenic |
| TGTGAAGTCTGCTGTTTCGC+AGG | 0.487726 | 5:-42806872 | MsG0580026719.01.T01:CDS |
| CTCATGTGCATTGCAACATA+AGG | 0.489603 | 5:+42806565 | None:intergenic |
| GTTACTGCCGGTGTGTTGGG+TGG | 0.490247 | 5:-42806205 | MsG0580026719.01.T01:CDS |
| GTAACAGCAGCAATGGTAGC+AGG | 0.490567 | 5:+42806223 | None:intergenic |
| TCAAGCAAGACATTTGCAAC+AGG | 0.490734 | 5:+42806973 | None:intergenic |
| TACTGCCGGTGTGTTGGGTG+GGG | 0.490861 | 5:-42806203 | MsG0580026719.01.T01:CDS |
| AGTCTGCTGTTTCGCAGGCT+CGG | 0.491298 | 5:-42806867 | MsG0580026719.01.T01:CDS |
| AATAAAATGTCCAAGTCCAT+TGG | 0.499237 | 5:+42807225 | None:intergenic |
| ATCAAAGGGGCCATGACAAA+AGG | 0.499817 | 5:+42807138 | None:intergenic |
| GTTAGAGAGGCAGAAATGTC+GGG | 0.505013 | 5:-42806457 | MsG0580026719.01.T01:CDS |
| GTAAGAGCTGTTACTAAACT+CGG | 0.507748 | 5:-42807327 | MsG0580026719.01.T01:CDS |
| CTCGCCCTTCTGCAGTTGAG+AGG | 0.510611 | 5:-42806249 | MsG0580026719.01.T01:CDS |
| GGATCCCTCTCAACTGCAGA+AGG | 0.513133 | 5:+42806244 | None:intergenic |
| CTGAGTTGAGGAAGCGAGGT+TGG | 0.516557 | 5:+42807352 | None:intergenic |
| ACCATTGCTGCTGTTACTGC+CGG | 0.517492 | 5:-42806217 | MsG0580026719.01.T01:CDS |
| AGGTAGATTAATCCCTGTCC+TGG | 0.518253 | 5:-42806755 | MsG0580026719.01.T01:CDS |
| ATATCGGTGCTCAGTCTACT+CGG | 0.518529 | 5:-42806813 | MsG0580026719.01.T01:CDS |
| CTTATGTTGCAATGCACATG+AGG | 0.525825 | 5:-42806564 | MsG0580026719.01.T01:CDS |
| TCCATAATAATCCTCCATGC+CGG | 0.526016 | 5:+42806430 | None:intergenic |
| CGGTGGACTAAATGCATCAT+GGG | 0.526133 | 5:-42807049 | MsG0580026719.01.T01:CDS |
| CCATAATAATCCTCCATGCC+GGG | 0.527864 | 5:+42806431 | None:intergenic |
| CCGGTGGACTAAATGCATCA+TGG | 0.533304 | 5:-42807050 | MsG0580026719.01.T01:CDS |
| GTCGCGAAGAACATTGGTCA+TGG | 0.534897 | 5:-42806947 | MsG0580026719.01.T01:CDS |
| TGCTCAGTCTACTCGGCCGA+TGG | 0.535499 | 5:-42806806 | MsG0580026719.01.T01:CDS |
| TCGCCCTTCTGCAGTTGAGA+GGG | 0.537131 | 5:-42806248 | MsG0580026719.01.T01:CDS |
| GGGGATTCTTAATTTGACTC+CGG | 0.539045 | 5:-42806926 | MsG0580026719.01.T01:CDS |
| GGCAGAAGGAAAACTCATAT+CGG | 0.539405 | 5:-42806710 | MsG0580026719.01.T01:CDS |
| GGTTAGAGAGGCAGAAATGT+CGG | 0.541271 | 5:-42806458 | MsG0580026719.01.T01:CDS |
| ATAATGATACAGTTGCTAGC+TGG | 0.548830 | 5:-42807092 | MsG0580026719.01.T01:CDS |
| GAATCCCTTATTGGAGAGGA+AGG | 0.553444 | 5:-42807012 | MsG0580026719.01.T01:CDS |
| CGTACTGACGGTATAAGGTA+TGG | 0.555471 | 5:-42807255 | MsG0580026719.01.T01:CDS |
| TGATTGGTCGCGAAGAACAT+TGG | 0.556713 | 5:-42806953 | MsG0580026719.01.T01:CDS |
| TCGCGAAGAACATTGGTCAT+GGG | 0.557979 | 5:-42806946 | MsG0580026719.01.T01:CDS |
| GAAATATGATAATGTTTGCA+AGG | 0.562167 | 5:-42806506 | MsG0580026719.01.T01:CDS |
| TCTTTGAGAATCCAATTCCA+GGG | 0.565717 | 5:+42806407 | None:intergenic |
| ATCCTCAGAATTATACGCGC+AGG | 0.569632 | 5:-42806479 | MsG0580026719.01.T01:CDS |
| GTTCCCAGTAAATCCATCAA+AGG | 0.571018 | 5:+42807123 | None:intergenic |
| GACAATTTAGAGGTCCTCAC+AGG | 0.571113 | 5:-42806376 | MsG0580026719.01.T01:CDS |
| GCCCCTTTGATGGATTTACT+GGG | 0.573888 | 5:-42807126 | MsG0580026719.01.T01:CDS |
| ATTATACGCGCAGGTTAGAG+AGG | 0.575162 | 5:-42806470 | MsG0580026719.01.T01:CDS |
| CGTTCCCAAATTCTTTCATG+AGG | 0.575848 | 5:+42807162 | None:intergenic |
| ATTGCTTTGGGAAGTAATGT+TGG | 0.578130 | 5:-42807483 | MsG0580026719.01.T01:CDS |
| CAAAAGAATTGAGAAGGACA+TGG | 0.578669 | 5:-42807280 | MsG0580026719.01.T01:CDS |
| AAGGTATGGTCCAAGGCCAA+TGG | 0.579739 | 5:-42807241 | MsG0580026719.01.T01:CDS |
| CGCGAAGAACATTGGTCATG+GGG | 0.583740 | 5:-42806945 | MsG0580026719.01.T01:CDS |
| TGGAGGATTATTATGGACCC+TGG | 0.584512 | 5:-42806424 | MsG0580026719.01.T01:CDS |
| CATACCTTATACCGTCAGTA+CGG | 0.586658 | 5:+42807256 | None:intergenic |
| ACATTACAGCTTCCAGGACA+GGG | 0.587554 | 5:+42806743 | None:intergenic |
| AAGGACATGGGCCGTACTGA+CGG | 0.590366 | 5:-42807267 | MsG0580026719.01.T01:CDS |
| TGCACTCAAAAGAATTGAGA+AGG | 0.591758 | 5:-42807286 | MsG0580026719.01.T01:CDS |
| ACCGGCAGTAACAGCAGCAA+TGG | 0.592145 | 5:+42806216 | None:intergenic |
| AAACAGCAGACTTCACAGAC+TGG | 0.598220 | 5:+42806878 | None:intergenic |
| GCATCAGAAGCAGTGCGCAG+AGG | 0.600270 | 5:-42806664 | MsG0580026719.01.T01:CDS |
| ATGCATTTAGTCCACCGGAA+TGG | 0.606923 | 5:+42807055 | None:intergenic |
| ATGTCAATACCTGAGGCAGA+AGG | 0.607903 | 5:-42806724 | MsG0580026719.01.T01:CDS |
| CAGCTCTTACTGCTGAGTTG+AGG | 0.610637 | 5:+42807340 | None:intergenic |
| TTATAAACGATGTATCTGCT+GGG | 0.612784 | 5:-42806633 | MsG0580026719.01.T01:CDS |
| ACGGTATAAGGTATGGTCCA+AGG | 0.616302 | 5:-42807248 | MsG0580026719.01.T01:CDS |
| ACAGAGATTCTCGATGCCAT+CGG | 0.617433 | 5:+42806790 | None:intergenic |
| TAAGAGCTGTTACTAAACTC+GGG | 0.618873 | 5:-42807326 | MsG0580026719.01.T01:CDS |
| TAGTATAGGAGCATGAGAGA+TGG | 0.625351 | 5:+42806312 | None:intergenic |
| AACCTGCGCGTATAATTCTG+AGG | 0.633515 | 5:+42806477 | None:intergenic |
| TGGAGAATCCCTTATTGGAG+AGG | 0.635835 | 5:-42807016 | MsG0580026719.01.T01:CDS |
| ATTAGCCCCACCCAACACAC+CGG | 0.636124 | 5:+42806198 | None:intergenic |
| AAATGTCGGGAATCCCGGCA+TGG | 0.636653 | 5:-42806444 | MsG0580026719.01.T01:CDS |
| AGTGCAGACAATAATTCATG+TGG | 0.636663 | 5:+42807303 | None:intergenic |
| TTATGTTGCAATGCACATGA+GGG | 0.639561 | 5:-42806563 | MsG0580026719.01.T01:CDS |
| AAAAGAATTGAGAAGGACAT+GGG | 0.639820 | 5:-42807279 | MsG0580026719.01.T01:CDS |
| GATCCCTCTCAACTGCAGAA+GGG | 0.640024 | 5:+42806245 | None:intergenic |
| ACTGCTGAGTTGAGGAAGCG+AGG | 0.643340 | 5:+42807348 | None:intergenic |
| GGCTCGGTTGATGATATCAG+AGG | 0.645667 | 5:-42806851 | MsG0580026719.01.T01:CDS |
| TGAACTTCACACTCGAGATG+AGG | 0.650070 | 5:-42807514 | MsG0580026719.01.T01:CDS |
| AGCTGTAATGTCAATACCTG+AGG | 0.663866 | 5:-42806731 | MsG0580026719.01.T01:CDS |
| TGTCGGGAATCCCGGCATGG+AGG | 0.676925 | 5:-42806441 | MsG0580026719.01.T01:CDS |
| AGAAGGAAAACTCATATCGG+TGG | 0.679059 | 5:-42806707 | MsG0580026719.01.T01:CDS |
| GCTCGGTTGATGATATCAGA+GGG | 0.685069 | 5:-42806850 | MsG0580026719.01.T01:CDS |
| GGTTGGTCAGTAACATACGC+TGG | 0.694789 | 5:+42807369 | None:intergenic |
| TAATATCAGGTATTCCTGTG+AGG | 0.707150 | 5:+42806362 | None:intergenic |
| TCGAGTGTGAAGTTCAACAG+AGG | 0.712636 | 5:+42807521 | None:intergenic |
| ATCAGAAGCAGTGCGCAGAG+GGG | 0.714462 | 5:-42806662 | MsG0580026719.01.T01:CDS |
| TATGTTGCAATGCACATGAG+GGG | 0.732291 | 5:-42806562 | MsG0580026719.01.T01:CDS |
| TCCCAGTAAATCCATCAAAG+GGG | 0.734725 | 5:+42807125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAGATTCAAATATGTTTA+AGG | - | Chr5:42807058-42807077 | MsG0580026719.01.T01:CDS | 20.0% |
| ! | AGAGATTTCAAAAAGAAGTT+TGG | - | Chr5:42807331-42807350 | MsG0580026719.01.T01:CDS | 25.0% |
| ! | TGCAAACATTATCATATTTC+AGG | + | Chr5:42807160-42807179 | None:intergenic | 25.0% |
| !! | GAAATATGATAATGTTTGCA+AGG | - | Chr5:42807160-42807179 | MsG0580026719.01.T01:CDS | 25.0% |
| !! | TTCAAATATGTTTAAGGTCA+TGG | - | Chr5:42807064-42807083 | MsG0580026719.01.T01:CDS | 25.0% |
| AAAAGAATTGAGAAGGACAT+GGG | - | Chr5:42806387-42806406 | MsG0580026719.01.T01:CDS | 30.0% | |
| AATAAAATGTCCAAGTCCAT+TGG | + | Chr5:42806444-42806463 | None:intergenic | 30.0% | |
| AATGCATCATGGGAAAAATT+AGG | - | Chr5:42806627-42806646 | MsG0580026719.01.T01:CDS | 30.0% | |
| AGTACCTCATGAAAGAATTT+GGG | - | Chr5:42806500-42806519 | MsG0580026719.01.T01:CDS | 30.0% | |
| CCTAAAAATCTCTTTCTTGA+AGG | + | Chr5:42807386-42807405 | None:intergenic | 30.0% | |
| GAAAACTGAAGACAATTTAG+AGG | - | Chr5:42807280-42807299 | MsG0580026719.01.T01:CDS | 30.0% | |
| GAAATCTCTTGTCTAATATC+AGG | + | Chr5:42807320-42807339 | None:intergenic | 30.0% | |
| TGACTTTCTCATCAATTTCA+AGG | + | Chr5:42806235-42806254 | None:intergenic | 30.0% | |
| TTATAAACGATGTATCTGCT+GGG | - | Chr5:42807033-42807052 | MsG0580026719.01.T01:CDS | 30.0% | |
| TTGAAATTGATGAGAAAGTC+AGG | - | Chr5:42806234-42806253 | MsG0580026719.01.T01:CDS | 30.0% | |
| ! | CCTTCAAGAAAGAGATTTTT+AGG | - | Chr5:42807383-42807402 | MsG0580026719.01.T01:CDS | 30.0% |
| ! | GACTTGGACATTTTATTCTA+TGG | - | Chr5:42806447-42806466 | MsG0580026719.01.T01:CDS | 30.0% |
| !! | GGTGCTGATATAATTGATAT+CGG | - | Chr5:42806837-42806856 | MsG0580026719.01.T01:CDS | 30.0% |
| AGTGCAGACAATAATTCATG+TGG | + | Chr5:42806366-42806385 | None:intergenic | 35.0% | |
| ATAATGATACAGTTGCTAGC+TGG | - | Chr5:42806574-42806593 | MsG0580026719.01.T01:CDS | 35.0% | |
| ATTATTATGGACCCTGGAAT+TGG | - | Chr5:42807248-42807267 | MsG0580026719.01.T01:CDS | 35.0% | |
| CAAAAGAATTGAGAAGGACA+TGG | - | Chr5:42806386-42806405 | MsG0580026719.01.T01:CDS | 35.0% | |
| CAGTACCTCATGAAAGAATT+TGG | - | Chr5:42806499-42806518 | MsG0580026719.01.T01:CDS | 35.0% | |
| CGATAGACTACAAAACTTCA+AGG | - | Chr5:42806206-42806225 | MsG0580026719.01.T01:CDS | 35.0% | |
| CTTATAAACGATGTATCTGC+TGG | - | Chr5:42807032-42807051 | MsG0580026719.01.T01:CDS | 35.0% | |
| CTTGAAGGTCCAATTAGTAT+AGG | + | Chr5:42807371-42807390 | None:intergenic | 35.0% | |
| GTAAGAGCTGTTACTAAACT+CGG | - | Chr5:42806339-42806358 | MsG0580026719.01.T01:CDS | 35.0% | |
| TAAGAGCTGTTACTAAACTC+GGG | - | Chr5:42806340-42806359 | MsG0580026719.01.T01:CDS | 35.0% | |
| TAATATCAGGTATTCCTGTG+AGG | + | Chr5:42807307-42807326 | None:intergenic | 35.0% | |
| TCATCATTCTGCATTGTACA+AGG | + | Chr5:42807134-42807153 | None:intergenic | 35.0% | |
| TCTCATGCTCCTATACTAAT+TGG | - | Chr5:42807359-42807378 | MsG0580026719.01.T01:CDS | 35.0% | |
| TGCACTCAAAAGAATTGAGA+AGG | - | Chr5:42806380-42806399 | MsG0580026719.01.T01:CDS | 35.0% | |
| TTAAGCTTTGCGATGCAATT+CGG | - | Chr5:42807531-42807550 | MsG0580026719.01.T01:CDS | 35.0% | |
| TTATGTTGCAATGCACATGA+GGG | - | Chr5:42807103-42807122 | MsG0580026719.01.T01:CDS | 35.0% | |
| TTCCCAGTAAATCCATCAAA+GGG | + | Chr5:42806545-42806564 | None:intergenic | 35.0% | |
| TTGCAAATGTCTTGCTTGAT+TGG | - | Chr5:42806697-42806716 | MsG0580026719.01.T01:CDS | 35.0% | |
| ! | TCTTTGAGAATCCAATTCCA+GGG | + | Chr5:42807262-42807281 | None:intergenic | 35.0% |
| ! | TTCTTTGAGAATCCAATTCC+AGG | + | Chr5:42807263-42807282 | None:intergenic | 35.0% |
| !! | ATTGCTTTGGGAAGTAATGT+TGG | - | Chr5:42806183-42806202 | MsG0580026719.01.T01:CDS | 35.0% |
| ACATACCTTCCTCTCCAATA+AGG | + | Chr5:42806662-42806681 | None:intergenic | 40.0% | |
| AGAAGGAAAACTCATATCGG+TGG | - | Chr5:42806959-42806978 | MsG0580026719.01.T01:CDS | 40.0% | |
| AGCTGTAATGTCAATACCTG+AGG | - | Chr5:42806935-42806954 | MsG0580026719.01.T01:CDS | 40.0% | |
| ATCTCTGTCGAAGAAGAGTT+AGG | - | Chr5:42806891-42806910 | MsG0580026719.01.T01:CDS | 40.0% | |
| CATACCTTATACCGTCAGTA+CGG | + | Chr5:42806413-42806432 | None:intergenic | 40.0% | |
| CATACCTTCCTCTCCAATAA+GGG | + | Chr5:42806661-42806680 | None:intergenic | 40.0% | |
| CGTTCCCAAATTCTTTCATG+AGG | + | Chr5:42806507-42806526 | None:intergenic | 40.0% | |
| CTCATGTGCATTGCAACATA+AGG | + | Chr5:42807104-42807123 | None:intergenic | 40.0% | |
| CTTATGTTGCAATGCACATG+AGG | - | Chr5:42807102-42807121 | MsG0580026719.01.T01:CDS | 40.0% | |
| GAGGAAGTAGTGATTGCTTT+GGG | - | Chr5:42806171-42806190 | MsG0580026719.01.T01:CDS | 40.0% | |
| GCATCATGGGAAAAATTAGG+TGG | - | Chr5:42806630-42806649 | MsG0580026719.01.T01:CDS | 40.0% | |
| GGCAGAAGGAAAACTCATAT+CGG | - | Chr5:42806956-42806975 | MsG0580026719.01.T01:CDS | 40.0% | |
| GTTCCCAGTAAATCCATCAA+AGG | + | Chr5:42806546-42806565 | None:intergenic | 40.0% | |
| TATGTTGCAATGCACATGAG+GGG | - | Chr5:42807104-42807123 | MsG0580026719.01.T01:CDS | 40.0% | |
| TCAAGCAAGACATTTGCAAC+AGG | + | Chr5:42806696-42806715 | None:intergenic | 40.0% | |
| TCCATAATAATCCTCCATGC+CGG | + | Chr5:42807239-42807258 | None:intergenic | 40.0% | |
| TCCCAGTAAATCCATCAAAG+GGG | + | Chr5:42806544-42806563 | None:intergenic | 40.0% | |
| TGAAGTTCAACAGAGGAGTT+TGG | + | Chr5:42806141-42806160 | None:intergenic | 40.0% | |
| TGAGGAAGTAGTGATTGCTT+TGG | - | Chr5:42806170-42806189 | MsG0580026719.01.T01:CDS | 40.0% | |
| TTAGGTGGAGAATCCCTTAT+TGG | - | Chr5:42806645-42806664 | MsG0580026719.01.T01:CDS | 40.0% | |
| ! | GGGGATTCTTAATTTGACTC+CGG | - | Chr5:42806740-42806759 | MsG0580026719.01.T01:CDS | 40.0% |
| ! | GTATTGACATTACAGCTTCC+AGG | + | Chr5:42806932-42806951 | None:intergenic | 40.0% |
| ! | TAGTATAGGAGCATGAGAGA+TGG | + | Chr5:42807357-42807376 | None:intergenic | 40.0% |
| !! | CATTCATTTTCAGGCCATTC+CGG | - | Chr5:42806597-42806616 | MsG0580026719.01.T01:CDS | 40.0% |
| !!! | ACTCCGGATAGTTTTAGTGA+TGG | - | Chr5:42806756-42806775 | MsG0580026719.01.T01:CDS | 40.0% |
| !!! | CTCCGGATAGTTTTAGTGAT+GGG | - | Chr5:42806757-42806776 | MsG0580026719.01.T01:CDS | 40.0% |
| !!! | TCCGGATAGTTTTAGTGATG+GGG | - | Chr5:42806758-42806777 | MsG0580026719.01.T01:CDS | 40.0% |
| AAACAGCAGACTTCACAGAC+TGG | + | Chr5:42806791-42806810 | None:intergenic | 45.0% | |
| AACCTGCGCGTATAATTCTG+AGG | + | Chr5:42807192-42807211 | None:intergenic | 45.0% | |
| ACAGAGATTCTCGATGCCAT+CGG | + | Chr5:42806879-42806898 | None:intergenic | 45.0% | |
| ACATTACAGCTTCCAGGACA+GGG | + | Chr5:42806926-42806945 | None:intergenic | 45.0% | |
| ACGGTATAAGGTATGGTCCA+AGG | - | Chr5:42806418-42806437 | MsG0580026719.01.T01:CDS | 45.0% | |
| AGGTAGATTAATCCCTGTCC+TGG | - | Chr5:42806911-42806930 | MsG0580026719.01.T01:CDS | 45.0% | |
| ATCAAAGGGGCCATGACAAA+AGG | + | Chr5:42806531-42806550 | None:intergenic | 45.0% | |
| ATCCTCAGAATTATACGCGC+AGG | - | Chr5:42807187-42807206 | MsG0580026719.01.T01:CDS | 45.0% | |
| ATGCATTTAGTCCACCGGAA+TGG | + | Chr5:42806614-42806633 | None:intergenic | 45.0% | |
| ATGTCAATACCTGAGGCAGA+AGG | - | Chr5:42806942-42806961 | MsG0580026719.01.T01:CDS | 45.0% | |
| ATTATACGCGCAGGTTAGAG+AGG | - | Chr5:42807196-42807215 | MsG0580026719.01.T01:CDS | 45.0% | |
| CCATAATAATCCTCCATGCC+GGG | + | Chr5:42807238-42807257 | None:intergenic | 45.0% | |
| CCATGATGCATTTAGTCCAC+CGG | + | Chr5:42806619-42806638 | None:intergenic | 45.0% | |
| CCCCCATCACTAAAACTATC+CGG | + | Chr5:42806762-42806781 | None:intergenic | 45.0% | |
| GAATCCCTTATTGGAGAGGA+AGG | - | Chr5:42806654-42806673 | MsG0580026719.01.T01:CDS | 45.0% | |
| GACAATTTAGAGGTCCTCAC+AGG | - | Chr5:42807290-42807309 | MsG0580026719.01.T01:CDS | 45.0% | |
| GGTTAGAGAGGCAGAAATGT+CGG | - | Chr5:42807208-42807227 | MsG0580026719.01.T01:CDS | 45.0% | |
| GTTAGAGAGGCAGAAATGTC+GGG | - | Chr5:42807209-42807228 | MsG0580026719.01.T01:CDS | 45.0% | |
| TCGAGTGTGAAGTTCAACAG+AGG | + | Chr5:42806148-42806167 | None:intergenic | 45.0% | |
| TCGCGAAGAACATTGGTCAT+GGG | - | Chr5:42806720-42806739 | MsG0580026719.01.T01:CDS | 45.0% | |
| TGAACTTCACACTCGAGATG+AGG | - | Chr5:42806152-42806171 | MsG0580026719.01.T01:CDS | 45.0% | |
| TGGAGAATCCCTTATTGGAG+AGG | - | Chr5:42806650-42806669 | MsG0580026719.01.T01:CDS | 45.0% | |
| TGGAGGATTATTATGGACCC+TGG | - | Chr5:42807242-42807261 | MsG0580026719.01.T01:CDS | 45.0% | |
| ! | ATATCGGTGCTCAGTCTACT+CGG | - | Chr5:42806853-42806872 | MsG0580026719.01.T01:CDS | 45.0% |
| ! | ATGAGTTTTCCTTCTGCCTC+AGG | + | Chr5:42806954-42806973 | None:intergenic | 45.0% |
| ! | CGTACTGACGGTATAAGGTA+TGG | - | Chr5:42806411-42806430 | MsG0580026719.01.T01:CDS | 45.0% |
| ! | GCTAGCTGGCATTCATTTTC+AGG | - | Chr5:42806588-42806607 | MsG0580026719.01.T01:CDS | 45.0% |
| ! | TGATTGGTCGCGAAGAACAT+TGG | - | Chr5:42806713-42806732 | MsG0580026719.01.T01:CDS | 45.0% |
| ! | TTGGGAACGACCTTTTGTCA+TGG | - | Chr5:42806518-42806537 | MsG0580026719.01.T01:CDS | 45.0% |
| ! | TTTTGTCATGGCCCCTTTGA+TGG | - | Chr5:42806530-42806549 | MsG0580026719.01.T01:CDS | 45.0% |
| !! | CGGTGGACTAAATGCATCAT+GGG | - | Chr5:42806617-42806636 | MsG0580026719.01.T01:CDS | 45.0% |
| !! | GCCCCTTTGATGGATTTACT+GGG | - | Chr5:42806540-42806559 | MsG0580026719.01.T01:CDS | 45.0% |
| !! | GCTCGGTTGATGATATCAGA+GGG | - | Chr5:42806816-42806835 | MsG0580026719.01.T01:CDS | 45.0% |
| !!! | CCGGATAGTTTTAGTGATGG+GGG | - | Chr5:42806759-42806778 | MsG0580026719.01.T01:CDS | 45.0% |
| AAGGTATGGTCCAAGGCCAA+TGG | - | Chr5:42806425-42806444 | MsG0580026719.01.T01:CDS | 50.0% | |
| ACCATTGCTGCTGTTACTGC+CGG | - | Chr5:42807449-42807468 | MsG0580026719.01.T01:CDS | 50.0% | |
| CAGCTCTTACTGCTGAGTTG+AGG | + | Chr5:42806329-42806348 | None:intergenic | 50.0% | |
| CCCGGCATGGAGGATTATTA+TGG | - | Chr5:42807235-42807254 | MsG0580026719.01.T01:CDS | 50.0% | |
| CGCGAAGAACATTGGTCATG+GGG | - | Chr5:42806721-42806740 | MsG0580026719.01.T01:CDS | 50.0% | |
| GACATTACAGCTTCCAGGAC+AGG | + | Chr5:42806927-42806946 | None:intergenic | 50.0% | |
| GATCCCTCTCAACTGCAGAA+GGG | + | Chr5:42807424-42807443 | None:intergenic | 50.0% | |
| GTAACAGCAGCAATGGTAGC+AGG | + | Chr5:42807446-42807465 | None:intergenic | 50.0% | |
| GTCGCGAAGAACATTGGTCA+TGG | - | Chr5:42806719-42806738 | MsG0580026719.01.T01:CDS | 50.0% | |
| ! | ATGTCCAAGTCCATTGGCCT+TGG | + | Chr5:42806438-42806457 | None:intergenic | 50.0% |
| ! | GGTTGGTCAGTAACATACGC+TGG | + | Chr5:42806300-42806319 | None:intergenic | 50.0% |
| !! | CCGGTGGACTAAATGCATCA+TGG | - | Chr5:42806616-42806635 | MsG0580026719.01.T01:CDS | 50.0% |
| !! | GGCCCCTTTGATGGATTTAC+TGG | - | Chr5:42806539-42806558 | MsG0580026719.01.T01:CDS | 50.0% |
| !! | GGCTCGGTTGATGATATCAG+AGG | - | Chr5:42806815-42806834 | MsG0580026719.01.T01:CDS | 50.0% |
| !! | TCATTTTCAGGCCATTCCGG+TGG | - | Chr5:42806600-42806619 | MsG0580026719.01.T01:CDS | 50.0% |
| !! | TGTGAAGTCTGCTGTTTCGC+AGG | - | Chr5:42806794-42806813 | MsG0580026719.01.T01:CDS | 50.0% |
| AAATGTCGGGAATCCCGGCA+TGG | - | Chr5:42807222-42807241 | MsG0580026719.01.T01:CDS | 55.0% | |
| AAGGACATGGGCCGTACTGA+CGG | - | Chr5:42806399-42806418 | MsG0580026719.01.T01:CDS | 55.0% | |
| ACCGGCAGTAACAGCAGCAA+TGG | + | Chr5:42807453-42807472 | None:intergenic | 55.0% | |
| ATCAGAAGCAGTGCGCAGAG+GGG | - | Chr5:42807004-42807023 | MsG0580026719.01.T01:CDS | 55.0% | |
| ATTAGCCCCACCCAACACAC+CGG | + | Chr5:42807471-42807490 | None:intergenic | 55.0% | |
| CATCAGAAGCAGTGCGCAGA+GGG | - | Chr5:42807003-42807022 | MsG0580026719.01.T01:CDS | 55.0% | |
| GCTGTTACTGCCGGTGTGTT+GGG | - | Chr5:42807458-42807477 | MsG0580026719.01.T01:CDS | 55.0% | |
| GGATCCCTCTCAACTGCAGA+AGG | + | Chr5:42807425-42807444 | None:intergenic | 55.0% | |
| GGCAGAAATGTCGGGAATCC+CGG | - | Chr5:42807217-42807236 | MsG0580026719.01.T01:CDS | 55.0% | |
| TCGCCCTTCTGCAGTTGAGA+GGG | - | Chr5:42807418-42807437 | MsG0580026719.01.T01:CDS | 55.0% | |
| TGCTGTTACTGCCGGTGTGT+TGG | - | Chr5:42807457-42807476 | MsG0580026719.01.T01:CDS | 55.0% | |
| TTACTGCCGGTGTGTTGGGT+GGG | - | Chr5:42807462-42807481 | MsG0580026719.01.T01:CDS | 55.0% | |
| ! | ACTGCTGAGTTGAGGAAGCG+AGG | + | Chr5:42806321-42806340 | None:intergenic | 55.0% |
| ! | CTGAGTTGAGGAAGCGAGGT+TGG | + | Chr5:42806317-42806336 | None:intergenic | 55.0% |
| ! | TGGGCCGTACTGACGGTATA+AGG | - | Chr5:42806406-42806425 | MsG0580026719.01.T01:CDS | 55.0% |
| ! | TGGTCCAAGGCCAATGGACT+TGG | - | Chr5:42806431-42806450 | MsG0580026719.01.T01:CDS | 55.0% |
| !! | AGTCTGCTGTTTCGCAGGCT+CGG | - | Chr5:42806799-42806818 | MsG0580026719.01.T01:CDS | 55.0% |
| CTCGCCCTTCTGCAGTTGAG+AGG | - | Chr5:42807417-42807436 | MsG0580026719.01.T01:CDS | 60.0% | |
| GCATCAGAAGCAGTGCGCAG+AGG | - | Chr5:42807002-42807021 | MsG0580026719.01.T01:CDS | 60.0% | |
| GTTACTGCCGGTGTGTTGGG+TGG | - | Chr5:42807461-42807480 | MsG0580026719.01.T01:CDS | 60.0% | |
| TACTGCCGGTGTGTTGGGTG+GGG | - | Chr5:42807463-42807482 | MsG0580026719.01.T01:CDS | 60.0% | |
| TGCTCAGTCTACTCGGCCGA+TGG | - | Chr5:42806860-42806879 | MsG0580026719.01.T01:CDS | 60.0% | |
| TGTCGGGAATCCCGGCATGG+AGG | - | Chr5:42807225-42807244 | MsG0580026719.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 42806117 | 42807571 | 42806117 | ID=MsG0580026719.01;Name=MsG0580026719.01 |
| Chr5 | mRNA | 42806117 | 42807571 | 42806117 | ID=MsG0580026719.01.T01;Parent=MsG0580026719.01;Name=MsG0580026719.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|484 |
| Chr5 | exon | 42806117 | 42807571 | 42806117 | ID=MsG0580026719.01.T01:exon:18124;Parent=MsG0580026719.01.T01 |
| Chr5 | CDS | 42806117 | 42807571 | 42806117 | ID=MsG0580026719.01.T01:cds;Parent=MsG0580026719.01.T01 |
| Gene Sequence |
| Protein sequence |
