AlfalfaGEDB | MsG0780040283.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040283.01

KEGG: K03687
GO: GO:0000774 GO:0006457 GO:0042803 GO:0051087
PFAM: PF01025

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040283.01.T01	QIB02092.1	100	290	0	0	1	290	1	290	0	586

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040283.01.T01	Q8DJB3	44.248	113	63	0	143	255	78	190	1.41E-26	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040283.01.T01	A0A6C0TI38	100.000	290	0	0	1	290	1	290	0.0	586

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0780040283.01	-0.809820	1.566272e-50	9.289792e-48
MsG0080047910.01	MsG0780040283.01	0.811774	5.917867e-51	3.695789e-48
MsG0080047967.01	MsG0780040283.01	0.876141	1.767313e-68	8.474289e-65
MsG0080048036.01	MsG0780040283.01	-0.803807	2.921992e-49	1.482356e-46
MsG0080048059.01	MsG0780040283.01	0.908295	1.998122e-81	3.685337e-77
MsG0080048281.01	MsG0780040283.01	0.812126	4.960440e-51	3.127463e-48
MsG0080048611.01	MsG0780040283.01	0.809819	1.566720e-50	9.292269e-48
MsG0080048691.01	MsG0780040283.01	0.808567	2.906811e-50	1.667627e-47
MsG0080048694.01	MsG0780040283.01	0.801253	9.825031e-49	4.670257e-46
MsG0080048695.01	MsG0780040283.01	0.801760	7.732249e-49	3.722720e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040283.01.T01	MTR_7g087250	98.276	290	5	0	1	290	1	290	0.0	577
MsG0780040283.01.T01	MTR_7g087250	98.047	256	5	0	1	256	1	256	0.0	503
MsG0780040283.01.T01	MTR_3g073450	42.604	169	95	1	103	271	84	250	3.29e-36	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040283.01.T01	AT5G17710	55.513	263	103	6	1	256	1	256	9.10e-76	234
MsG0780040283.01.T01	AT5G17710	54.753	263	103	6	1	256	1	254	7.04e-74	229
MsG0780040283.01.T01	AT5G17710	54.753	263	103	6	1	256	1	254	7.04e-74	229
MsG0780040283.01.T01	AT1G36390	47.887	142	74	0	115	256	78	219	1.23e-42	147
MsG0780040283.01.T01	AT1G36390	47.887	142	74	0	115	256	78	219	1.23e-42	147

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Find 101 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTTTCCAGGTCTTC+AGG	0.294892	7:-75431260	None:intergenic
AAAGATCGAAAACTAAGGAT+CGG	0.611204	7:+75430488	MsG0780040283.01.T01:CDS
AAATGCTCAAGGGGAAGTTG+TGG	0.607604	7:+75430568	MsG0780040283.01.T01:CDS
AACTTGACGAACCGGGGAGT+GGG	0.515310	7:-75428084	None:intergenic
AAGGTACTAACTTGACGAAC+CGG	0.414480	7:-75428092	None:intergenic
AAGTGGTGAAGGTCTTCTTC+TGG	0.348290	7:-75428037	None:intergenic
AATACTATCAGAGGTGAAGC+AGG	0.540458	7:-75430323	None:intergenic
ACACTATATCAAGTTTCTTC+AGG	0.308240	7:+75431234	MsG0780040283.01.T01:CDS
ACCTACTATCTCATCATCAA+TGG	0.481367	7:-75430420	None:intergenic
ACTGGTCACAAATGCTCAAG+GGG	0.630703	7:+75430559	MsG0780040283.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATCGAAAACTAAGGAT+CGG	+	Chr7:75430488-75430507	MsG0780040283.01.T01:CDS	30.0%
ACACTATATCAAGTTTCTTC+AGG	+	Chr7:75431234-75431253	MsG0780040283.01.T01:CDS	30.0%
ACTCAAACAAAGGAAATAGT+TGG	+	Chr7:75430030-75430049	MsG0780040283.01.T01:intron	30.0%
AGAAAAGATATTGAGAGAGA+TGG	-	Chr7:75429839-75429858	None:intergenic	30.0%
ATCTCCTAGAAATTCCAAAT+TGG	+	Chr7:75429431-75429450	MsG0780040283.01.T01:intron	30.0%
ATCTGTAGTCTCCATTTAAT+GGG	+	Chr7:75429288-75429307	MsG0780040283.01.T01:intron	30.0%
ATCTTAATGGTTTAGACAAC+AGG	-	Chr7:75429177-75429196	None:intergenic	30.0%
CCAGCAAATTAACATAAACA+AGG	-	Chr7:75430215-75430234	None:intergenic	30.0%
CGGAAAAATTAAAATCGAAG+GGG	+	Chr7:75428732-75428751	MsG0780040283.01.T01:intron	30.0%
CTCAAACAAAGGAAATAGTT+GGG	+	Chr7:75430031-75430050	MsG0780040283.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	75427869	75431284	75427869	ID=MsG0780040283.01;Name=MsG0780040283.01
Chr7	mRNA	75427869	75431284	75427869	ID=MsG0780040283.01.T01;Parent=MsG0780040283.01;Name=MsG0780040283.01.T01;_AED=0.49;_eAED=0.49;_QI=59\|0.5\|0.66\|1\|1\|1\|3\|0\|290
Chr7	exon	75427869	75428176	75427869	ID=MsG0780040283.01.T01:exon:14342;Parent=MsG0780040283.01.T01
Chr7	exon	75430251	75430769	75430251	ID=MsG0780040283.01.T01:exon:14343;Parent=MsG0780040283.01.T01
Chr7	exon	75431180	75431284	75431180	ID=MsG0780040283.01.T01:exon:14344;Parent=MsG0780040283.01.T01
Chr7	five_prime_UTR	75427869	75427927	75427869	ID=MsG0780040283.01.T01:five_prime_utr;Parent=MsG0780040283.01.T01
Chr7	CDS	75427928	75428176	75427928	ID=MsG0780040283.01.T01:cds;Parent=MsG0780040283.01.T01
Chr7	CDS	75430251	75430769	75430251	ID=MsG0780040283.01.T01:cds;Parent=MsG0780040283.01.T01
Chr7	CDS	75431180	75431284	75431180	ID=MsG0780040283.01.T01:cds;Parent=MsG0780040283.01.T01

Gene Sequence

>MsG0780040283.01.T01

ATGGCCACCGTCCTCCGAACTCCCACATTCCGGCCATCCCCAACCCTTCTCACCACCGCCGCCACCTCTTCCAATCACTCCAGAACCTCACGCGTTTCCGTCGCATCCTCCAGAAGAAGACCTTCACCACTTAAATCCCACCGGTTCGGTTCAATTCCCACTCCCCGGTTCGTCAAGTTAGTACCTTTTGCTTTTGACGGAGATACCGAGGCACCGCAAGTTCAAGATTCACCCGAGGTTCAGGTTCTGGACTCTACAGATGGTGCTGCTGATGTGGAGGAGAGTACAGGTGATGATGAGGTCAGCGACGCTGGTGAAGTACCTGCTTCACCTCTGATAGTATTACTTCAGTCATACAAAGAAGCACTAGCTAATAATGATGCAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCATTGATGATGAGATAGTAGGTCTTGAAGGGAAAATAGCCTCCTTATCCGAAGAGTTATCAATAGAAAAAGATCGAAAACTAAGGATCGGTGCAGACTTTGACAATTATCGGAAGAGAACCGACAGAGATCGCCTATCACTGGTCACAAATGCTCAAGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCTAAAGCTCAGATCAAGGTGGAGACAGAGGGGGAGGAGAAAATAAACAACAGCTATCAAAGCATATATAAGCAGTTCATTGAAATTCTAAACTCACTTGGAGTTGAGCCAGTGGATACGGTTGGAAATCCCTTTGATCCAATGGGGCGCAAACCAGTTGGCTCGAAATTCAATCGTGTACTTGCTGAACTTTTTCAAACACTATATCAAGTTTCTTCAGGTTTCCTGAAGACCTGGAAACACTTTTAA

Protein sequence

>MsG0780040283.01.T01

MATVLRTPTFRPSPTLLTTAATSSNHSRTSRVSVASSRRRPSPLKSHRFGSIPTPRFVKLVPFAFDGDTEAPQVQDSPEVQVLDSTDGAADVEESTGDDEVSDAGEVPASPLIVLLQSYKEALANNDAVKVAELESSLKSIDDEIVGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVDTVGNPFDPMGRKPVGSKFNRVLAELFQTLYQVSSGFLKTWKHF*