AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040283.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040283.01.T01 MTR_7g087250 98.276 290 5 0 1 290 1 290 0.0 577
MsG0780040283.01.T01 MTR_7g087250 98.047 256 5 0 1 256 1 256 0.0 503
MsG0780040283.01.T01 MTR_3g073450 42.604 169 95 1 103 271 84 250 3.29e-36 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040283.01.T01 AT5G17710 55.513 263 103 6 1 256 1 256 9.10e-76 234
MsG0780040283.01.T01 AT5G17710 54.753 263 103 6 1 256 1 254 7.04e-74 229
MsG0780040283.01.T01 AT5G17710 54.753 263 103 6 1 256 1 254 7.04e-74 229
MsG0780040283.01.T01 AT1G36390 47.887 142 74 0 115 256 78 219 1.23e-42 147
MsG0780040283.01.T01 AT1G36390 47.887 142 74 0 115 256 78 219 1.23e-42 147

Find 101 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGTTTCCAGGTCTTC+AGG 0.294892 7:-75431260 None:intergenic
ACACTATATCAAGTTTCTTC+AGG 0.308240 7:+75431234 MsG0780040283.01.T01:CDS
TTCACCCGAGGTTCAGGTTC+TGG 0.328084 7:+75428155 MsG0780040283.01.T01:CDS
TCAAGATTCACCCGAGGTTC+AGG 0.335433 7:+75428149 MsG0780040283.01.T01:CDS
GACGGAAACGCGTGAGGTTC+TGG 0.344746 7:-75428007 None:intergenic
AAGTGGTGAAGGTCTTCTTC+TGG 0.348290 7:-75428037 None:intergenic
CGGCGGTGGTGAGAAGGGTT+GGG 0.348997 7:-75427966 None:intergenic
GTGCAGACTTTGACAATTAT+CGG 0.363290 7:+75430510 MsG0780040283.01.T01:CDS
TAAGAGTTAAAAGTGTTTCC+AGG 0.368134 7:-75431268 None:intergenic
GCGGCGGTGGTGAGAAGGGT+TGG 0.378634 7:-75427967 None:intergenic
GGAGAGTTTGTTGCCTGTAT+TGG 0.387083 7:+75430589 MsG0780040283.01.T01:CDS
TATTGATAACTCTTCGGATA+AGG 0.394655 7:-75430462 None:intergenic
ATGGCCGGAATGTGGGAGTT+CGG 0.396663 7:-75427942 None:intergenic
TGTTGAAGAGGAAATGAAAT+TGG 0.400551 7:-75427867 None:intergenic
GGTTGGGGATGGCCGGAATG+TGG 0.403395 7:-75427950 None:intergenic
GAGCATTTGTGACCAGTGAT+AGG 0.406167 7:-75430553 None:intergenic
AAGGTACTAACTTGACGAAC+CGG 0.414480 7:-75428092 None:intergenic
GGCGGTGGTGAGAAGGGTTG+GGG 0.414826 7:-75427965 None:intergenic
TCCTCCGAACTCCCACATTC+CGG 0.425268 7:+75427938 MsG0780040283.01.T01:CDS
CTCTCAAAATTATCCAATAC+AGG 0.430687 7:-75430602 None:intergenic
TAACTTACCATTGGATCAAA+GGG 0.444978 7:-75430755 None:intergenic
CTTCAGGTTTCCTGAAGACC+TGG 0.446139 7:+75431250 MsG0780040283.01.T01:CDS
ATTGGAAGAGGTGGCGGCGG+TGG 0.451328 7:-75427980 None:intergenic
GATGAGATAGTAGGTCTTGA+AGG 0.461337 7:+75430428 MsG0780040283.01.T01:CDS
GCGTGAGGTTCTGGAGTGAT+TGG 0.473186 7:-75427998 None:intergenic
CCACTTAAATCCCACCGGTT+CGG 0.474511 7:+75428054 MsG0780040283.01.T01:CDS
AGGTGGCGGCGGTGGTGAGA+AGG 0.476821 7:-75427972 None:intergenic
CGATTGAATTTCGAGCCAAC+TGG 0.479280 7:-75431189 None:intergenic
ACCTACTATCTCATCATCAA+TGG 0.481367 7:-75430420 None:intergenic
GTGGCCATCGGAAGAAGATA+AGG 0.488760 7:-75427913 None:intergenic
TGGAGTTGAGCCAGTGGATA+CGG 0.491468 7:+75430724 MsG0780040283.01.T01:CDS
TGAGAAGGGTTGGGGATGGC+CGG 0.493613 7:-75427957 None:intergenic
ATCTTGAACTTGCGGTGCCT+CGG 0.495956 7:-75428133 None:intergenic
GTTGGGGATGGCCGGAATGT+GGG 0.500157 7:-75427949 None:intergenic
GTTCGGAGGACGGTGGCCAT+CGG 0.508967 7:-75427925 None:intergenic
TGGAAATCCCTTTGATCCAA+TGG 0.509314 7:+75430748 MsG0780040283.01.T01:CDS
TTAACTTACCATTGGATCAA+AGG 0.511196 7:-75430756 None:intergenic
TCGGTTCAATTCCCACTCCC+CGG 0.511973 7:+75428073 MsG0780040283.01.T01:CDS
ATTGAAATTCTAAACTCACT+TGG 0.514285 7:+75430704 MsG0780040283.01.T01:CDS
AACTTGACGAACCGGGGAGT+GGG 0.515310 7:-75428084 None:intergenic
GGTGGCGGCGGTGGTGAGAA+GGG 0.521742 7:-75427971 None:intergenic
GTGGTGAGAAGGGTTGGGGA+TGG 0.524363 7:-75427961 None:intergenic
AGGTACTAACTTGACGAACC+GGG 0.524465 7:-75428091 None:intergenic
GAGAGCTAAAGCTCAGATCA+AGG 0.525781 7:+75430622 MsG0780040283.01.T01:CDS
TGCAGTCAAAGTTGCTGAGT+TGG 0.525898 7:+75430382 MsG0780040283.01.T01:CDS
TACAGATGGTGCTGCTGATG+TGG 0.527477 7:+75430256 MsG0780040283.01.T01:CDS
GTATCTCCGTCAAAAGCAAA+AGG 0.528487 7:-75428111 None:intergenic
TAACTTGACGAACCGGGGAG+TGG 0.538642 7:-75428085 None:intergenic
GAGTGGGAATTGAACCGAAC+CGG 0.540147 7:-75428068 None:intergenic
GATGATGAGGTCAGCGACGC+TGG 0.540308 7:+75430293 MsG0780040283.01.T01:CDS
AATACTATCAGAGGTGAAGC+AGG 0.540458 7:-75430323 None:intergenic
TGGCCATCGGAAGAAGATAA+GGG 0.543322 7:-75427912 None:intergenic
CAGATCAAGGTGGAGACAGA+GGG 0.544694 7:+75430635 MsG0780040283.01.T01:CDS
GTGATTGGAAGAGGTGGCGG+CGG 0.545968 7:-75427983 None:intergenic
TTACCCTTATCTTCTTCCGA+TGG 0.550439 7:+75427909 MsG0780040283.01.T01:exon
CGACAGAGATCGCCTATCAC+TGG 0.551748 7:+75430541 MsG0780040283.01.T01:CDS
CACTGGTCACAAATGCTCAA+GGG 0.553819 7:+75430558 MsG0780040283.01.T01:CDS
CTTACCAGAACCTGAACCTC+GGG 0.555423 7:-75428159 None:intergenic
GGAGTGATTGGAAGAGGTGG+CGG 0.556647 7:-75427986 None:intergenic
TCCATTGATGATGAGATAGT+AGG 0.558085 7:+75430419 MsG0780040283.01.T01:CDS
GGTTCTGGAGTGATTGGAAG+AGG 0.564346 7:-75427992 None:intergenic
ATGCAGGGGCGCAAACCAGT+TGG 0.567238 7:+75431174 MsG0780040283.01.T01:intron
GATAAGGGTAAGGTGGCGAT+TGG 0.570719 7:-75427897 None:intergenic
CGGTGGGATTTAAGTGGTGA+AGG 0.570915 7:-75428048 None:intergenic
CCGAACCGGTGGGATTTAAG+TGG 0.571186 7:-75428054 None:intergenic
GAATGTGGGAGTTCGGAGGA+CGG 0.572182 7:-75427935 None:intergenic
TGGGAATTGAACCGAACCGG+TGG 0.574334 7:-75428065 None:intergenic
ATGAGATAGTAGGTCTTGAA+GGG 0.578111 7:+75430429 MsG0780040283.01.T01:CDS
TCTTCTTCTGGAGGATGCGA+CGG 0.580174 7:-75428025 None:intergenic
GGATTTCCAACCGTATCCAC+TGG 0.582289 7:-75430734 None:intergenic
TCAGATCAAGGTGGAGACAG+AGG 0.582701 7:+75430634 MsG0780040283.01.T01:CDS
TCACTGGTCACAAATGCTCA+AGG 0.585062 7:+75430557 MsG0780040283.01.T01:CDS
ATCGGAAGAAGATAAGGGTA+AGG 0.587373 7:-75427907 None:intergenic
CAGTGATAGGCGATCTCTGT+CGG 0.589421 7:-75430540 None:intergenic
GTTGAGCCAGTGGATACGGT+TGG 0.590743 7:+75430728 MsG0780040283.01.T01:CDS
TCGGGTGAATCTTGAACTTG+CGG 0.591032 7:-75428141 None:intergenic
TGATAACTCTTCGGATAAGG+AGG 0.598835 7:-75430459 None:intergenic
GACTGAAGTAATACTATCAG+AGG 0.601933 7:-75430332 None:intergenic
GCTGATGTGGAGGAGAGTAC+AGG 0.606308 7:+75430269 MsG0780040283.01.T01:CDS
AAATGCTCAAGGGGAAGTTG+TGG 0.607604 7:+75430568 MsG0780040283.01.T01:CDS
GGAGAGTACAGGTGATGATG+AGG 0.608475 7:+75430280 MsG0780040283.01.T01:CDS
AAAGATCGAAAACTAAGGAT+CGG 0.611204 7:+75430488 MsG0780040283.01.T01:CDS
ATTGGCGAATTGTGTTGAAG+AGG 0.611554 7:-75427879 None:intergenic
CTTCACCACTTAAATCCCAC+CGG 0.612873 7:+75428049 MsG0780040283.01.T01:CDS
GATCAAGGTGGAGACAGAGG+GGG 0.620556 7:+75430637 MsG0780040283.01.T01:CDS
TCTGGAGTGATTGGAAGAGG+TGG 0.625988 7:-75427989 None:intergenic
ATTCAACAGGACTCTACAGA+TGG 0.628787 7:+75430242 MsG0780040283.01.T01:intron
ACTGGTCACAAATGCTCAAG+GGG 0.630703 7:+75430559 MsG0780040283.01.T01:CDS
GCCGGAATGTGGGAGTTCGG+AGG 0.636031 7:-75427939 None:intergenic
TGGTGAAGGTCTTCTTCTGG+AGG 0.639079 7:-75428034 None:intergenic
CTCACTTGGAGTTGAGCCAG+TGG 0.641190 7:+75430718 MsG0780040283.01.T01:CDS
TGTGGGAGTTCGGAGGACGG+TGG 0.642626 7:-75427932 None:intergenic
GGATGCGACGGAAACGCGTG+AGG 0.644324 7:-75428013 None:intergenic
AGATGGTGCTGCTGATGTGG+AGG 0.644434 7:+75430259 MsG0780040283.01.T01:CDS
ACTTACCAGAACCTGAACCT+CGG 0.647885 7:-75428160 None:intergenic
GGAAGAAGATAAGGGTAAGG+TGG 0.648207 7:-75427904 None:intergenic
GGTACTAACTTGACGAACCG+GGG 0.661706 7:-75428090 None:intergenic
GGGAATTGAACCGAACCGGT+GGG 0.665597 7:-75428064 None:intergenic
AGATCAAGGTGGAGACAGAG+GGG 0.666460 7:+75430636 MsG0780040283.01.T01:CDS
GCAAGTTCAAGATTCACCCG+AGG 0.716027 7:+75428143 MsG0780040283.01.T01:CDS
AGCTAAAGCTCAGATCAAGG+TGG 0.719934 7:+75430625 MsG0780040283.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTAACATAATACTA+AGG + Chr7:75429606-75429625 MsG0780040283.01.T01:intron 10.0%
!! TTAGTATTATGTTAATTAAT+TGG - Chr7:75429607-75429626 None:intergenic 10.0%
!!! AAATATAAATTACAAGATTT+TGG + Chr7:75429657-75429676 MsG0780040283.01.T01:intron 10.0%
!!! TTGTTTTTTTTTTTTTTTGA+GGG + Chr7:75430116-75430135 MsG0780040283.01.T01:intron 10.0%
!! AAAATGAATATAACTATTTG+GGG - Chr7:75429696-75429715 None:intergenic 15.0%
!! AATCTTGTAATTTATATTTG+TGG - Chr7:75429656-75429675 None:intergenic 15.0%
!! ATTACTATTATTATTGTTGT+TGG + Chr7:75430076-75430095 MsG0780040283.01.T01:intron 15.0%
!! GAAAATGAATATAACTATTT+GGG - Chr7:75429697-75429716 None:intergenic 15.0%
!! TAAGACAATGTAAATATAAA+AGG - Chr7:75430928-75430947 None:intergenic 15.0%
!! TGAAAATGAATATAACTATT+TGG - Chr7:75429698-75429717 None:intergenic 15.0%
!! TTGTAATTAAAACAGAAAAT+GGG + Chr7:75428706-75428725 MsG0780040283.01.T01:intron 15.0%
!! TTTGTAATTAAAACAGAAAA+TGG + Chr7:75428705-75428724 MsG0780040283.01.T01:intron 15.0%
!!! ATGGTTTAAAATTTTGAATT+GGG + Chr7:75428905-75428924 MsG0780040283.01.T01:intron 15.0%
!!! ATTATTTATGATTTCTTTTG+TGG + Chr7:75430167-75430186 MsG0780040283.01.T01:intron 15.0%
!!! ATTTAAAATGTCTCTAAATT+AGG - Chr7:75429949-75429968 None:intergenic 15.0%
!!! GTTGTTTTTTTTTTTTTTTG+AGG + Chr7:75430115-75430134 MsG0780040283.01.T01:intron 15.0%
!!! TAAATTTCTTTTTTTGCAAA+TGG + Chr7:75430887-75430906 MsG0780040283.01.T01:intron 15.0%
!! CATAGTTGTTAATTAGAAAA+AGG + Chr7:75428286-75428305 MsG0780040283.01.T01:intron 20.0%
!! GTTTGAATTCAAAATCTTAA+TGG - Chr7:75429190-75429209 None:intergenic 20.0%
!! TTAATTACAAAAATCTCTTC+TGG - Chr7:75428696-75428715 None:intergenic 20.0%
!!! CATGGTTTAAAATTTTGAAT+TGG + Chr7:75428904-75428923 MsG0780040283.01.T01:intron 20.0%
!!! TGTGACTGTTAAATTTTATA+TGG + Chr7:75429996-75430015 MsG0780040283.01.T01:intron 20.0%
!!! TTATAGAACTACAAAGTTTT+AGG + Chr7:75429456-75429475 MsG0780040283.01.T01:intron 20.0%
!!! TTGTTATGTTTTTATTGCAT+TGG + Chr7:75428848-75428867 MsG0780040283.01.T01:intron 20.0%
!!! TTTTTCTATTGATAACTCTT+CGG - Chr7:75430471-75430490 None:intergenic 20.0%
! AAAATATAAACGAAAGAGGT+CGG - Chr7:75431128-75431147 None:intergenic 25.0%
! AGAAAATCTTATTATCATGC+AGG + Chr7:75430835-75430854 MsG0780040283.01.T01:intron 25.0%
! ATATTTGTGGTTTCTGTTTA+TGG - Chr7:75429643-75429662 None:intergenic 25.0%
! ATCGGAAAAATTAAAATCGA+AGG + Chr7:75428730-75428749 MsG0780040283.01.T01:intron 25.0%
! ATTCATGATTAACTTACCAT+TGG - Chr7:75430767-75430786 None:intergenic 25.0%
! ATTGAAATTCTAAACTCACT+TGG + Chr7:75430704-75430723 MsG0780040283.01.T01:CDS 25.0%
! GAAATTTATCAGCTTCATTA+CGG - Chr7:75430875-75430894 None:intergenic 25.0%
! GACAAAAATTATACTTCATG+AGG - Chr7:75431036-75431055 None:intergenic 25.0%
! TAGAAAAAGATCGAAAACTA+AGG + Chr7:75430483-75430502 MsG0780040283.01.T01:CDS 25.0%
! TATTTGTGGTTTCTGTTTAT+GGG - Chr7:75429642-75429661 None:intergenic 25.0%
! TCCTTATATACTTTCTTTCA+AGG - Chr7:75429776-75429795 None:intergenic 25.0%
! TCGGAAAAATTAAAATCGAA+GGG + Chr7:75428731-75428750 MsG0780040283.01.T01:intron 25.0%
! TTAAAACAGAAAATGGGAAT+CGG + Chr7:75428712-75428731 MsG0780040283.01.T01:intron 25.0%
!! AATTCCAATTTGGAATTTCT+AGG - Chr7:75429438-75429457 None:intergenic 25.0%
!! ACCTCTTTCGTTTATATTTT+TGG + Chr7:75431128-75431147 MsG0780040283.01.T01:intron 25.0%
!! ACCTTGAAAGAAAGTATATA+AGG + Chr7:75429772-75429791 MsG0780040283.01.T01:intron 25.0%
!! AGAAAGTATATAAGGATGTT+TGG + Chr7:75429780-75429799 MsG0780040283.01.T01:intron 25.0%
!! ATATACAAGCACAGTATTTT+TGG - Chr7:75429871-75429890 None:intergenic 25.0%
!! GTAGTTCTATAATTCCAATT+TGG - Chr7:75429448-75429467 None:intergenic 25.0%
!! TCACAAATAAGCTTTAACTA+AGG - Chr7:75429981-75430000 None:intergenic 25.0%
!!! ATTTTGAGTAACTCAAACAA+AGG + Chr7:75430020-75430039 MsG0780040283.01.T01:intron 25.0%
!!! TAAGAGATTTTTCAGAGAAT+GGG - Chr7:75431085-75431104 None:intergenic 25.0%
!!! TCAGTAGTTTTGTATTTGTT+TGG + Chr7:75428381-75428400 MsG0780040283.01.T01:intron 25.0%
!!! TTAAGAGATTTTTCAGAGAA+TGG - Chr7:75431086-75431105 None:intergenic 25.0%
AAAGATCGAAAACTAAGGAT+CGG + Chr7:75430488-75430507 MsG0780040283.01.T01:CDS 30.0%
ACACTATATCAAGTTTCTTC+AGG + Chr7:75431234-75431253 MsG0780040283.01.T01:CDS 30.0%
ACTCAAACAAAGGAAATAGT+TGG + Chr7:75430030-75430049 MsG0780040283.01.T01:intron 30.0%
AGAAAAGATATTGAGAGAGA+TGG - Chr7:75429839-75429858 None:intergenic 30.0%
ATCTCCTAGAAATTCCAAAT+TGG + Chr7:75429431-75429450 MsG0780040283.01.T01:intron 30.0%
ATCTGTAGTCTCCATTTAAT+GGG + Chr7:75429288-75429307 MsG0780040283.01.T01:intron 30.0%
ATCTTAATGGTTTAGACAAC+AGG - Chr7:75429177-75429196 None:intergenic 30.0%
CCAGCAAATTAACATAAACA+AGG - Chr7:75430215-75430234 None:intergenic 30.0%
CGGAAAAATTAAAATCGAAG+GGG + Chr7:75428732-75428751 MsG0780040283.01.T01:intron 30.0%
CTCAAACAAAGGAAATAGTT+GGG + Chr7:75430031-75430050 MsG0780040283.01.T01:intron 30.0%
CTCTCAAAATTATCCAATAC+AGG - Chr7:75430605-75430624 None:intergenic 30.0%
GCCAAAAATATAAACGAAAG+AGG - Chr7:75431132-75431151 None:intergenic 30.0%
TAACTTACCATTGGATCAAA+GGG - Chr7:75430758-75430777 None:intergenic 30.0%
TACCTGTCTTTCAATATTGT+TGG + Chr7:75430949-75430968 MsG0780040283.01.T01:intron 30.0%
TATATCACTAACAAAACGTG+TGG + Chr7:75428801-75428820 MsG0780040283.01.T01:intron 30.0%
TCAACTATTAGGTTAAGCTT+TGG + Chr7:75428350-75428369 MsG0780040283.01.T01:intron 30.0%
TCTCTATGTAGAAAGAAAGA+AGG - Chr7:75430818-75430837 None:intergenic 30.0%
TGATATTGCGACAAATAGTA+GGG + Chr7:75428488-75428507 MsG0780040283.01.T01:intron 30.0%
TGTCATCTATGATTTATGCA+GGG + Chr7:75431159-75431178 MsG0780040283.01.T01:intron 30.0%
TTAAAGAAACCAAGTTACCA+GGG + Chr7:75429486-75429505 MsG0780040283.01.T01:intron 30.0%
TTAACTTACCATTGGATCAA+AGG - Chr7:75430759-75430778 None:intergenic 30.0%
TTCTTTCAAGGTTGTTAACA+GGG - Chr7:75429764-75429783 None:intergenic 30.0%
TTGATATTGCGACAAATAGT+AGG + Chr7:75428487-75428506 MsG0780040283.01.T01:intron 30.0%
TTTAAAGAAACCAAGTTACC+AGG + Chr7:75429485-75429504 MsG0780040283.01.T01:intron 30.0%
TTTCTTTCAAGGTTGTTAAC+AGG - Chr7:75429765-75429784 None:intergenic 30.0%
TTTGAGAGCAAGAAACAAAT+TGG + Chr7:75428667-75428686 MsG0780040283.01.T01:intron 30.0%
! AATTTGTTTCTTGCTCTCAA+AGG - Chr7:75428668-75428687 None:intergenic 30.0%
! ATGAAAATGACTCCTTTTTC+TGG + Chr7:75429015-75429034 MsG0780040283.01.T01:intron 30.0%
! ATTTGGAATTTCTAGGAGAT+TGG - Chr7:75429431-75429450 None:intergenic 30.0%
! TATTGATAACTCTTCGGATA+AGG - Chr7:75430465-75430484 None:intergenic 30.0%
!! CCTTGTTTATGTTAATTTGC+TGG + Chr7:75430212-75430231 MsG0780040283.01.T01:intron 30.0%
!! TCTTTGGATTAGCTTATTAC+AGG - Chr7:75429403-75429422 None:intergenic 30.0%
!! TTAGTACCTTTTGCTTTTGA+CGG + Chr7:75428105-75428124 MsG0780040283.01.T01:CDS 30.0%
!!! GTAGTTTTGTATTTGTTTGG+AGG + Chr7:75428384-75428403 MsG0780040283.01.T01:intron 30.0%
ACAGGGTTCAAGTAAACTTA+TGG - Chr7:75429747-75429766 None:intergenic 35.0%
ACCTACTATCTCATCATCAA+TGG - Chr7:75430423-75430442 None:intergenic 35.0%
AGTACAGTTACACCAGAAAA+AGG - Chr7:75429030-75429049 None:intergenic 35.0%
AGTCTCCATTTAATGGGAAA+AGG + Chr7:75429294-75429313 MsG0780040283.01.T01:intron 35.0%
ATGAGATAGTAGGTCTTGAA+GGG + Chr7:75430429-75430448 MsG0780040283.01.T01:CDS 35.0%
ATTGGCTATCCTGTATTGTA+AGG + Chr7:75428866-75428885 MsG0780040283.01.T01:intron 35.0%
CATCTGTAGTCTCCATTTAA+TGG + Chr7:75429287-75429306 MsG0780040283.01.T01:intron 35.0%
CTGCTACAGAATCAACTATT+AGG + Chr7:75428339-75428358 MsG0780040283.01.T01:intron 35.0%
CTGTCATCTATGATTTATGC+AGG + Chr7:75431158-75431177 MsG0780040283.01.T01:intron 35.0%
CTGTCTTTCAATATTGTTGG+CGG + Chr7:75430952-75430971 MsG0780040283.01.T01:intron 35.0%
GACTGAAGTAATACTATCAG+AGG - Chr7:75430335-75430354 None:intergenic 35.0%
GGTTCAAGTAAACTTATGGA+GGG - Chr7:75429743-75429762 None:intergenic 35.0%
GTCATCTATGATTTATGCAG+GGG + Chr7:75431160-75431179 MsG0780040283.01.T01:intron 35.0%
GTGCAGACTTTGACAATTAT+CGG + Chr7:75430510-75430529 MsG0780040283.01.T01:CDS 35.0%
TACTAACTACTAGCAAAGAG+TGG + Chr7:75428963-75428982 MsG0780040283.01.T01:intron 35.0%
TTGGCTATCCTGTATTGTAA+GGG + Chr7:75428867-75428886 MsG0780040283.01.T01:intron 35.0%
! CAAAGCCTTTTCCCATTAAA+TGG - Chr7:75429302-75429321 None:intergenic 35.0%
! CACTTGTTTGAGCTTCTTTT+TGG + Chr7:75429123-75429142 MsG0780040283.01.T01:intron 35.0%
!! CCTCTAAAGCCTTTATGTTA+CGG + Chr7:75428560-75428579 MsG0780040283.01.T01:intron 35.0%
!! CTCTAAAGCCTTTATGTTAC+GGG + Chr7:75428561-75428580 MsG0780040283.01.T01:intron 35.0%
!! TCCATTGATGATGAGATAGT+AGG + Chr7:75430419-75430438 MsG0780040283.01.T01:CDS 35.0%
AATACTATCAGAGGTGAAGC+AGG - Chr7:75430326-75430345 None:intergenic 40.0%
ACTAACAAAACGTGTGGAAG+TGG + Chr7:75428807-75428826 MsG0780040283.01.T01:intron 40.0%
ATCGGAAGAAGATAAGGGTA+AGG - Chr7:75427910-75427929 None:intergenic 40.0%
ATTCAACAGGACTCTACAGA+TGG + Chr7:75430242-75430261 MsG0780040283.01.T01:intron 40.0%
ATTGGCGAATTGTGTTGAAG+AGG - Chr7:75427882-75427901 None:intergenic 40.0%
CAATTGCTCCCGTAACATAA+AGG - Chr7:75428572-75428591 None:intergenic 40.0%
CGCCAACAATATTGAAAGAC+AGG - Chr7:75430954-75430973 None:intergenic 40.0%
CTAGTAGTTAGTAACCTACC+TGG - Chr7:75428956-75428975 None:intergenic 40.0%
GATGAGATAGTAGGTCTTGA+AGG + Chr7:75430428-75430447 MsG0780040283.01.T01:CDS 40.0%
GGGTTCAAGTAAACTTATGG+AGG - Chr7:75429744-75429763 None:intergenic 40.0%
GTATCTCCGTCAAAAGCAAA+AGG - Chr7:75428114-75428133 None:intergenic 40.0%
TAGGAGATTGGATGCATCTT+TGG - Chr7:75429419-75429438 None:intergenic 40.0%
TCTGTAGAGTCCTGTTGAAT+TGG - Chr7:75430242-75430261 None:intergenic 40.0%
TGATAACTCTTCGGATAAGG+AGG - Chr7:75430462-75430481 None:intergenic 40.0%
TGGAAATCCCTTTGATCCAA+TGG + Chr7:75430748-75430767 MsG0780040283.01.T01:CDS 40.0%
TGGCTATCCTGTATTGTAAG+GGG + Chr7:75428868-75428887 MsG0780040283.01.T01:intron 40.0%
TGGGTGTAGAAGTGATGTAA+GGG + Chr7:75428924-75428943 MsG0780040283.01.T01:intron 40.0%
TGTGCTAAGGTTTACGATTC+AGG - Chr7:75429519-75429538 None:intergenic 40.0%
TTACCCTTATCTTCTTCCGA+TGG + Chr7:75427909-75427928 MsG0780040283.01.T01:exon 40.0%
TTGGGTGTAGAAGTGATGTA+AGG + Chr7:75428923-75428942 MsG0780040283.01.T01:intron 40.0%
! AAGGTACTAACTTGACGAAC+CGG - Chr7:75428095-75428114 None:intergenic 40.0%
! CCGTAACATAAAGGCTTTAG+AGG - Chr7:75428563-75428582 None:intergenic 40.0%
! TTGTTGGCGGTCAATGTTTT+TGG + Chr7:75430965-75430984 MsG0780040283.01.T01:intron 40.0%
!! AAAAGTGTTTCCAGGTCTTC+AGG - Chr7:75431263-75431282 None:intergenic 40.0%
!! CGAAGGGGAATTTGTTTTTC+TGG + Chr7:75428747-75428766 MsG0780040283.01.T01:intron 40.0%
!!! TTTTTTGTCAGCTTCTCGAG+AGG - Chr7:75429365-75429384 None:intergenic 40.0%
AAATGCTCAAGGGGAAGTTG+TGG + Chr7:75430568-75430587 MsG0780040283.01.T01:CDS 45.0%
AACAAAACGTGTGGAAGTGG+TGG + Chr7:75428810-75428829 MsG0780040283.01.T01:intron 45.0%
AAGTGGTGAAGGTCTTCTTC+TGG - Chr7:75428040-75428059 None:intergenic 45.0%
ACTGGTCACAAATGCTCAAG+GGG + Chr7:75430559-75430578 MsG0780040283.01.T01:CDS 45.0%
ACTTACCAGAACCTGAACCT+CGG - Chr7:75428163-75428182 None:intergenic 45.0%
AGCTAAAGCTCAGATCAAGG+TGG + Chr7:75430625-75430644 MsG0780040283.01.T01:CDS 45.0%
AGGTACTAACTTGACGAACC+GGG - Chr7:75428094-75428113 None:intergenic 45.0%
ATTAGCATCACGAGTCCTTG+GGG + Chr7:75429557-75429576 MsG0780040283.01.T01:intron 45.0%
CAAGGACTCGTGATGCTAAT+GGG - Chr7:75429557-75429576 None:intergenic 45.0%
CAAGTGTGCACTACGTTGTA+AGG - Chr7:75429109-75429128 None:intergenic 45.0%
CACTGGTCACAAATGCTCAA+GGG + Chr7:75430558-75430577 MsG0780040283.01.T01:CDS 45.0%
CATTAGCATCACGAGTCCTT+GGG + Chr7:75429556-75429575 MsG0780040283.01.T01:intron 45.0%
CGATTGAATTTCGAGCCAAC+TGG - Chr7:75431192-75431211 None:intergenic 45.0%
CTACTAGCAAAGAGTGGAGA+AGG + Chr7:75428969-75428988 MsG0780040283.01.T01:intron 45.0%
CTTCACCACTTAAATCCCAC+CGG + Chr7:75428049-75428068 MsG0780040283.01.T01:CDS 45.0%
GAGAGCTAAAGCTCAGATCA+AGG + Chr7:75430622-75430641 MsG0780040283.01.T01:CDS 45.0%
GAGCATTTGTGACCAGTGAT+AGG - Chr7:75430556-75430575 None:intergenic 45.0%
GGAAGAAGATAAGGGTAAGG+TGG - Chr7:75427907-75427926 None:intergenic 45.0%
TCACAGACCCCTTACAATAC+AGG - Chr7:75428878-75428897 None:intergenic 45.0%
TCACTGGTCACAAATGCTCA+AGG + Chr7:75430557-75430576 MsG0780040283.01.T01:CDS 45.0%
TCGGGTGAATCTTGAACTTG+CGG - Chr7:75428144-75428163 None:intergenic 45.0%
TGCAGTCAAAGTTGCTGAGT+TGG + Chr7:75430382-75430401 MsG0780040283.01.T01:CDS 45.0%
TGCTGGTACACCAATTCAAC+AGG + Chr7:75430229-75430248 MsG0780040283.01.T01:intron 45.0%
TGGCCATCGGAAGAAGATAA+GGG - Chr7:75427915-75427934 None:intergenic 45.0%
!! GGAGAGTTTGTTGCCTGTAT+TGG + Chr7:75430589-75430608 MsG0780040283.01.T01:CDS 45.0%
!! GGCGTTGGTAATATGTGCTA+AGG - Chr7:75429532-75429551 None:intergenic 45.0%
!!! TTGGCGGTCAATGTTTTTGG+TGG + Chr7:75430968-75430987 MsG0780040283.01.T01:intron 45.0%
AAGAGTGGAGAAGGATCTGG+CGG + Chr7:75428978-75428997 MsG0780040283.01.T01:intron 50.0%
ACGATTCAGGAGTTGTTCCC+TGG - Chr7:75429506-75429525 None:intergenic 50.0%
AGATCAAGGTGGAGACAGAG+GGG + Chr7:75430636-75430655 MsG0780040283.01.T01:CDS 50.0%
AGGGGTCTGTGAGCAATACA+TGG + Chr7:75428886-75428905 MsG0780040283.01.T01:intron 50.0%
ATCTTGAACTTGCGGTGCCT+CGG - Chr7:75428136-75428155 None:intergenic 50.0%
CAGATCAAGGTGGAGACAGA+GGG + Chr7:75430635-75430654 MsG0780040283.01.T01:CDS 50.0%
CAGTGATAGGCGATCTCTGT+CGG - Chr7:75430543-75430562 None:intergenic 50.0%
CCAAGGACTCGTGATGCTAA+TGG - Chr7:75429558-75429577 None:intergenic 50.0%
CCATTAGCATCACGAGTCCT+TGG + Chr7:75429555-75429574 MsG0780040283.01.T01:intron 50.0%
CGGTGGGATTTAAGTGGTGA+AGG - Chr7:75428051-75428070 None:intergenic 50.0%
CTAGTACTTGTAAGCCCCCA+AGG - Chr7:75429575-75429594 None:intergenic 50.0%
CTTACCAGAACCTGAACCTC+GGG - Chr7:75428162-75428181 None:intergenic 50.0%
GAGTGGGAATTGAACCGAAC+CGG - Chr7:75428071-75428090 None:intergenic 50.0%
GATAAGGGTAAGGTGGCGAT+TGG - Chr7:75427900-75427919 None:intergenic 50.0%
GCAAAGAGTGGAGAAGGATC+TGG + Chr7:75428975-75428994 MsG0780040283.01.T01:intron 50.0%
GCAAGTTCAAGATTCACCCG+AGG + Chr7:75428143-75428162 MsG0780040283.01.T01:CDS 50.0%
GGAGTTGTTCCCTGGTAACT+TGG - Chr7:75429498-75429517 None:intergenic 50.0%
GGATTTCCAACCGTATCCAC+TGG - Chr7:75430737-75430756 None:intergenic 50.0%
GGTACTAACTTGACGAACCG+GGG - Chr7:75428093-75428112 None:intergenic 50.0%
GTGATGTAAGGGTAGAGTCC+AGG + Chr7:75428935-75428954 MsG0780040283.01.T01:intron 50.0%
GTGGCCATCGGAAGAAGATA+AGG - Chr7:75427916-75427935 None:intergenic 50.0%
TCAAGATTCACCCGAGGTTC+AGG + Chr7:75428149-75428168 MsG0780040283.01.T01:CDS 50.0%
TCAGATCAAGGTGGAGACAG+AGG + Chr7:75430634-75430653 MsG0780040283.01.T01:CDS 50.0%
TGGAGTTGAGCCAGTGGATA+CGG + Chr7:75430724-75430743 MsG0780040283.01.T01:CDS 50.0%
TGGTGAAGGTCTTCTTCTGG+AGG - Chr7:75428037-75428056 None:intergenic 50.0%
TGTAAGGGTAGAGTCCAGGT+AGG + Chr7:75428939-75428958 MsG0780040283.01.T01:intron 50.0%
TTAGCATCACGAGTCCTTGG+GGG + Chr7:75429558-75429577 MsG0780040283.01.T01:intron 50.0%
! CCACTTAAATCCCACCGGTT+CGG + Chr7:75428054-75428073 MsG0780040283.01.T01:CDS 50.0%
! CTTCAGGTTTCCTGAAGACC+TGG + Chr7:75431250-75431269 MsG0780040283.01.T01:CDS 50.0%
! GGAGAGTACAGGTGATGATG+AGG + Chr7:75430280-75430299 MsG0780040283.01.T01:CDS 50.0%
! TCTGGAGTGATTGGAAGAGG+TGG - Chr7:75427992-75428011 None:intergenic 50.0%
! TCTTCTTCTGGAGGATGCGA+CGG - Chr7:75428028-75428047 None:intergenic 50.0%
! TGCTTTTGACGGAGATACCG+AGG + Chr7:75428116-75428135 MsG0780040283.01.T01:CDS 50.0%
!! GGCTTTAGAGGTGTCTGCAA+CGG - Chr7:75428551-75428570 None:intergenic 50.0%
!! GGTTCTGGAGTGATTGGAAG+AGG - Chr7:75427995-75428014 None:intergenic 50.0%
!! TACAGATGGTGCTGCTGATG+TGG + Chr7:75430256-75430275 MsG0780040283.01.T01:CDS 50.0%
AACTTGACGAACCGGGGAGT+GGG - Chr7:75428087-75428106 None:intergenic 55.0%
ATGGCCGGAATGTGGGAGTT+CGG - Chr7:75427945-75427964 None:intergenic 55.0%
CCGAACCGGTGGGATTTAAG+TGG - Chr7:75428057-75428076 None:intergenic 55.0%
CGACAGAGATCGCCTATCAC+TGG + Chr7:75430541-75430560 MsG0780040283.01.T01:CDS 55.0%
CTCACTTGGAGTTGAGCCAG+TGG + Chr7:75430718-75430737 MsG0780040283.01.T01:CDS 55.0%
GAATGTGGGAGTTCGGAGGA+CGG - Chr7:75427938-75427957 None:intergenic 55.0%
GATCAAGGTGGAGACAGAGG+GGG + Chr7:75430637-75430656 MsG0780040283.01.T01:CDS 55.0%
GGAGTGATTGGAAGAGGTGG+CGG - Chr7:75427989-75428008 None:intergenic 55.0%
GGGAATTGAACCGAACCGGT+GGG - Chr7:75428067-75428086 None:intergenic 55.0%
GTTGAGCCAGTGGATACGGT+TGG + Chr7:75430728-75430747 MsG0780040283.01.T01:CDS 55.0%
TAACTTGACGAACCGGGGAG+TGG - Chr7:75428088-75428107 None:intergenic 55.0%
TCCTCCGAACTCCCACATTC+CGG + Chr7:75427938-75427957 MsG0780040283.01.T01:CDS 55.0%
TCGGTTCAATTCCCACTCCC+CGG + Chr7:75428073-75428092 MsG0780040283.01.T01:CDS 55.0%
TGGGAATTGAACCGAACCGG+TGG - Chr7:75428068-75428087 None:intergenic 55.0%
! GACTCGTGATGCTAATGGGC+TGG - Chr7:75429553-75429572 None:intergenic 55.0%
! GCTGATGTGGAGGAGAGTAC+AGG + Chr7:75430269-75430288 MsG0780040283.01.T01:CDS 55.0%
! TTCACCCGAGGTTCAGGTTC+TGG + Chr7:75428155-75428174 MsG0780040283.01.T01:CDS 55.0%
!! AGATGGTGCTGCTGATGTGG+AGG + Chr7:75430259-75430278 MsG0780040283.01.T01:CDS 55.0%
!! CGGTGTCGCAACTGCAATTG+CGG - Chr7:75428531-75428550 None:intergenic 55.0%
!! GCGTGAGGTTCTGGAGTGAT+TGG - Chr7:75428001-75428020 None:intergenic 55.0%
!! TGATGCTAATGGGCTGGCGT+TGG - Chr7:75429547-75429566 None:intergenic 55.0%
GACGGAAACGCGTGAGGTTC+TGG - Chr7:75428010-75428029 None:intergenic 60.0%
GATGATGAGGTCAGCGACGC+TGG + Chr7:75430293-75430312 MsG0780040283.01.T01:CDS 60.0%
GTGGTGAGAAGGGTTGGGGA+TGG - Chr7:75427964-75427983 None:intergenic 60.0%
GTTGGGGATGGCCGGAATGT+GGG - Chr7:75427952-75427971 None:intergenic 60.0%
TGAGAAGGGTTGGGGATGGC+CGG - Chr7:75427960-75427979 None:intergenic 60.0%
! ATGCAGGGGCGCAAACCAGT+TGG + Chr7:75431174-75431193 MsG0780040283.01.T01:intron 60.0%
! GTGATTGGAAGAGGTGGCGG+CGG - Chr7:75427986-75428005 None:intergenic 60.0%
CAAGGTGGAGACAGAGGGGG+AGG + Chr7:75430640-75430659 MsG0780040283.01.T01:CDS 65.0%
CGGCGGTGGTGAGAAGGGTT+GGG - Chr7:75427969-75427988 None:intergenic 65.0%
GCCGGAATGTGGGAGTTCGG+AGG - Chr7:75427942-75427961 None:intergenic 65.0%
GGATGCGACGGAAACGCGTG+AGG - Chr7:75428016-75428035 None:intergenic 65.0%
GGCGGTGGTGAGAAGGGTTG+GGG - Chr7:75427968-75427987 None:intergenic 65.0%
GGTTGGGGATGGCCGGAATG+TGG - Chr7:75427953-75427972 None:intergenic 65.0%
GTTCGGAGGACGGTGGCCAT+CGG - Chr7:75427928-75427947 None:intergenic 65.0%
TGTGGGAGTTCGGAGGACGG+TGG - Chr7:75427935-75427954 None:intergenic 65.0%
! ATTGGAAGAGGTGGCGGCGG+TGG - Chr7:75427983-75428002 None:intergenic 65.0%
GCGGCGGTGGTGAGAAGGGT+TGG - Chr7:75427970-75427989 None:intergenic 70.0%
! AGGTGGCGGCGGTGGTGAGA+AGG - Chr7:75427975-75427994 None:intergenic 70.0%
! GGTGGCGGCGGTGGTGAGAA+GGG - Chr7:75427974-75427993 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 75427869 75431284 75427869 ID=MsG0780040283.01;Name=MsG0780040283.01
Chr7 mRNA 75427869 75431284 75427869 ID=MsG0780040283.01.T01;Parent=MsG0780040283.01;Name=MsG0780040283.01.T01;_AED=0.49;_eAED=0.49;_QI=59|0.5|0.66|1|1|1|3|0|290
Chr7 exon 75427869 75428176 75427869 ID=MsG0780040283.01.T01:exon:14342;Parent=MsG0780040283.01.T01
Chr7 exon 75430251 75430769 75430251 ID=MsG0780040283.01.T01:exon:14343;Parent=MsG0780040283.01.T01
Chr7 exon 75431180 75431284 75431180 ID=MsG0780040283.01.T01:exon:14344;Parent=MsG0780040283.01.T01
Chr7 five_prime_UTR 75427869 75427927 75427869 ID=MsG0780040283.01.T01:five_prime_utr;Parent=MsG0780040283.01.T01
Chr7 CDS 75427928 75428176 75427928 ID=MsG0780040283.01.T01:cds;Parent=MsG0780040283.01.T01
Chr7 CDS 75430251 75430769 75430251 ID=MsG0780040283.01.T01:cds;Parent=MsG0780040283.01.T01
Chr7 CDS 75431180 75431284 75431180 ID=MsG0780040283.01.T01:cds;Parent=MsG0780040283.01.T01
Gene Sequence

>MsG0780040283.01.T01

ATGGCCACCGTCCTCCGAACTCCCACATTCCGGCCATCCCCAACCCTTCTCACCACCGCCGCCACCTCTTCCAATCACTCCAGAACCTCACGCGTTTCCGTCGCATCCTCCAGAAGAAGACCTTCACCACTTAAATCCCACCGGTTCGGTTCAATTCCCACTCCCCGGTTCGTCAAGTTAGTACCTTTTGCTTTTGACGGAGATACCGAGGCACCGCAAGTTCAAGATTCACCCGAGGTTCAGGTTCTGGACTCTACAGATGGTGCTGCTGATGTGGAGGAGAGTACAGGTGATGATGAGGTCAGCGACGCTGGTGAAGTACCTGCTTCACCTCTGATAGTATTACTTCAGTCATACAAAGAAGCACTAGCTAATAATGATGCAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCATTGATGATGAGATAGTAGGTCTTGAAGGGAAAATAGCCTCCTTATCCGAAGAGTTATCAATAGAAAAAGATCGAAAACTAAGGATCGGTGCAGACTTTGACAATTATCGGAAGAGAACCGACAGAGATCGCCTATCACTGGTCACAAATGCTCAAGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCTAAAGCTCAGATCAAGGTGGAGACAGAGGGGGAGGAGAAAATAAACAACAGCTATCAAAGCATATATAAGCAGTTCATTGAAATTCTAAACTCACTTGGAGTTGAGCCAGTGGATACGGTTGGAAATCCCTTTGATCCAATGGGGCGCAAACCAGTTGGCTCGAAATTCAATCGTGTACTTGCTGAACTTTTTCAAACACTATATCAAGTTTCTTCAGGTTTCCTGAAGACCTGGAAACACTTTTAA

Protein sequence

>MsG0780040283.01.T01

MATVLRTPTFRPSPTLLTTAATSSNHSRTSRVSVASSRRRPSPLKSHRFGSIPTPRFVKLVPFAFDGDTEAPQVQDSPEVQVLDSTDGAADVEESTGDDEVSDAGEVPASPLIVLLQSYKEALANNDAVKVAELESSLKSIDDEIVGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVDTVGNPFDPMGRKPVGSKFNRVLAELFQTLYQVSSGFLKTWKHF*