AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007783.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007783.01.T01 MTR_2g031990 96.797 281 8 1 28 308 1 280 0.0 548
MsG0280007783.01.T01 MTR_4g097510 27.358 212 123 10 55 262 6 190 5.22e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007783.01.T01 AT4G20760 75.686 255 62 0 54 308 44 298 3.84e-145 410
MsG0280007783.01.T01 AT4G20760 75.686 255 62 0 54 308 64 318 2.01e-144 409

Find 71 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGATGTGCAACAACTTT+TGG 0.278163 2:+20523429 None:intergenic
AGAAACCACATTGAACAAAT+TGG 0.288395 2:-20524296 MsG0280007783.01.T01:CDS
TTACCTGGTTGCAGCACTTC+AGG 0.309608 2:+20524603 None:intergenic
ATCTTTAATGCTTTCATATG+AGG 0.350695 2:-20524266 MsG0280007783.01.T01:CDS
TGAAGAAGAGAATGCTCTTC+TGG 0.356280 2:+20526229 None:intergenic
CAGTTGATGCATTAGGATTA+CGG 0.378721 2:+20525858 None:intergenic
AGTGCAAGGGTTGCATCTAT+TGG 0.379178 2:-20523973 MsG0280007783.01.T01:CDS
CATTAATGAGAAGGTTTAGA+TGG 0.381244 2:+20524646 None:intergenic
CGTAATCCTAATGCATCAAC+TGG 0.384959 2:-20525857 MsG0280007783.01.T01:CDS
AACTGGGCTTCTTCATTTGA+AGG 0.387513 2:-20525840 MsG0280007783.01.T01:CDS
CTTAAAGCTGGAGGTGGCAT+TGG 0.391361 2:-20524030 MsG0280007783.01.T01:CDS
AACCTTCTCATTAATGCATC+TGG 0.398628 2:-20524639 MsG0280007783.01.T01:CDS
AGAAGCCCAGTTGATGCATT+AGG 0.400206 2:+20525851 None:intergenic
TCATCATCTTCTCAAGCTAA+TGG 0.425069 2:-20526206 MsG0280007783.01.T01:CDS
TGCAATAGAATACATATGAT+TGG 0.426249 2:+20523536 None:intergenic
TAATGCCGTCGGTCCTATCT+TGG 0.436507 2:-20524242 MsG0280007783.01.T01:CDS
CAATGGCAAGTTCTTTGCTT+GGG 0.439897 2:-20523387 MsG0280007783.01.T01:CDS
AATGGTGTTTCCTTAGTTCA+AGG 0.447999 2:-20526188 MsG0280007783.01.T01:CDS
TTAAAGCTGGAGGTGGCATT+GGG 0.448490 2:-20524029 MsG0280007783.01.T01:CDS
TTGTGGCTAGTTTGAGTGCA+AGG 0.455555 2:-20523987 MsG0280007783.01.T01:CDS
TCTGGAAGCTCCTTGAACTA+AGG 0.459833 2:+20526178 None:intergenic
CTATTGGCGATAATCGTCTC+GGG 0.464427 2:-20523957 MsG0280007783.01.T01:CDS
GGCAAGTTCTTTGCTTGGGA+TGG 0.471669 2:-20523383 MsG0280007783.01.T01:CDS
GTTACCTTGATAACCAAGAT+AGG 0.479512 2:+20524229 None:intergenic
CGGTCCTATCTTGGTTATCA+AGG 0.479719 2:-20524233 MsG0280007783.01.T01:intron
CAAGGAGCTTCCAGAGGAAT+CGG 0.479788 2:-20526170 MsG0280007783.01.T01:CDS
ACAATGGCAAGTTCTTTGCT+TGG 0.481131 2:-20523388 MsG0280007783.01.T01:CDS
GACTGTTGAAAGTTCTATTG+AGG 0.482023 2:-20525777 MsG0280007783.01.T01:intron
ATGTGGCCTCTTCTTAAAGC+TGG 0.492856 2:-20524042 MsG0280007783.01.T01:CDS
GAATTCAAGACCGATTCCTC+TGG 0.498734 2:+20526160 None:intergenic
CCATGGCTTCACGTTCCCCT+CGG 0.507270 2:-20526265 MsG0280007783.01.T01:CDS
GGGATGGTCAAGAAATTCCT+TGG 0.508072 2:-20523367 MsG0280007783.01.T01:CDS
AGATCTGTGTCAACTGTACC+AGG 0.510748 2:+20523512 None:intergenic
GTTGGAGTTTGCGAGGAAGA+AGG 0.522651 2:-20523561 MsG0280007783.01.T01:CDS
TTGTCAATAAAAGAGACATA+TGG 0.523455 2:-20524669 MsG0280007783.01.T01:CDS
CTTCTCCAATTTGTTCAATG+TGG 0.532375 2:+20524291 None:intergenic
GGAAAGAAGTGGTGCAGTTG+TGG 0.541874 2:-20524004 MsG0280007783.01.T01:CDS
CCGAGGGGAACGTGAAGCCA+TGG 0.545507 2:+20526265 None:intergenic
TCTATTGGCGATAATCGTCT+CGG 0.545892 2:-20523958 MsG0280007783.01.T01:CDS
TGCCAGATGCATTAATGAGA+AGG 0.549104 2:+20524637 None:intergenic
CCCCACTCATAACACTTCCA+TGG 0.559867 2:-20526282 MsG0280007783.01.T01:CDS
TGTGGCTAGTTTGAGTGCAA+GGG 0.561568 2:-20523986 MsG0280007783.01.T01:CDS
CCTCTTCTTAAAGCTGGAGG+TGG 0.561667 2:-20524036 MsG0280007783.01.T01:CDS
TCATATGAGGTTAATGCCGT+CGG 0.567166 2:-20524253 MsG0280007783.01.T01:CDS
CCACCTCCAGCTTTAAGAAG+AGG 0.569003 2:+20524036 None:intergenic
AGCTGGAGGTGGCATTGGGA+CGG 0.573880 2:-20524025 MsG0280007783.01.T01:CDS
ATATGTATTCTATTGCATCC+TGG 0.575422 2:-20523530 MsG0280007783.01.T01:CDS
GCCATGGAAGTGTTATGAGT+GGG 0.585439 2:+20526281 None:intergenic
TGGCCTCTTCTTAAAGCTGG+AGG 0.586099 2:-20524039 MsG0280007783.01.T01:CDS
TGGCTAGTGATAGAAGCCGA+GGG 0.589776 2:+20526249 None:intergenic
CAAAGAACTTGCCATTGTCA+TGG 0.596876 2:+20523393 None:intergenic
CGATCTCGTTGGAGTTTGCG+AGG 0.597005 2:-20523568 MsG0280007783.01.T01:CDS
CTGGCTAGTGATAGAAGCCG+AGG 0.605793 2:+20526248 None:intergenic
ATACCTGAAGTGCTGCAACC+AGG 0.607063 2:-20524606 MsG0280007783.01.T01:intron
TATTGGCGATAATCGTCTCG+GGG 0.615665 2:-20523956 MsG0280007783.01.T01:CDS
AATTTCTAAATCAGCACATG+TGG 0.616873 2:-20524059 MsG0280007783.01.T01:intron
CATGGAAGTGTTATGAGTGG+GGG 0.623448 2:+20526283 None:intergenic
AGTGTCAAAGACGATCTCGT+TGG 0.626216 2:-20523579 MsG0280007783.01.T01:CDS
GGCATTGGGACGGAAAGAAG+TGG 0.627744 2:-20524015 MsG0280007783.01.T01:CDS
CCATGGAAGTGTTATGAGTG+GGG 0.629223 2:+20526282 None:intergenic
CTTTCAACAGTCAAATCCAA+AGG 0.633353 2:+20525788 None:intergenic
TTAGTTCAAGGAGCTTCCAG+AGG 0.637415 2:-20526176 MsG0280007783.01.T01:CDS
AATGTCAAGAGCCATGACAA+TGG 0.667426 2:-20523404 MsG0280007783.01.T01:CDS
AGAGAAAAGAACATGAAGCG+TGG 0.679057 2:+20526341 None:intergenic
ATGGAAGTGTTATGAGTGGG+GGG 0.679177 2:+20526284 None:intergenic
GATAACCAAGATAGGACCGA+CGG 0.679582 2:+20524237 None:intergenic
ACAAATATGACAGATTACCA+AGG 0.689876 2:+20523350 None:intergenic
GTAATCCTAATGCATCAACT+GGG 0.689940 2:-20525856 MsG0280007783.01.T01:CDS
ATTGGCGATAATCGTCTCGG+GGG 0.707865 2:-20523955 MsG0280007783.01.T01:CDS
GGCTAGTGATAGAAGCCGAG+GGG 0.717127 2:+20526250 None:intergenic
AGCCATGGAAGTGTTATGAG+TGG 0.728190 2:+20526280 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATTTATTATAATATTTC+AGG - Chr2:20525008-20525027 MsG0280007783.01.T01:intron 10.0%
!!! ATAATTTTAGAAGTAAAATT+GGG - Chr2:20525552-20525571 MsG0280007783.01.T01:intron 10.0%
!!! ATCAAATGAAAAAAATATTT+TGG + Chr2:20524393-20524412 None:intergenic 10.0%
!! AAAACAACTTATAGATTATA+TGG - Chr2:20526007-20526026 MsG0280007783.01.T01:intron 15.0%
!! TTTATTTGTTTATCTATTTG+TGG - Chr2:20525529-20525548 MsG0280007783.01.T01:intron 15.0%
!!! AAAAAAATTACTTTTCTTCA+TGG - Chr2:20523634-20523653 MsG0280007783.01.T01:intron 15.0%
!!! AAAAAATTACTTTTCTTCAT+GGG - Chr2:20523635-20523654 MsG0280007783.01.T01:intron 15.0%
!!! AAAGAAAAACATTGTTTTTA+AGG + Chr2:20523589-20523608 None:intergenic 15.0%
!!! ATGAAGAAAAGTAATTTTTT+TGG + Chr2:20523635-20523654 None:intergenic 15.0%
!!! GATAATTTTAGAAGTAAAAT+TGG - Chr2:20525551-20525570 MsG0280007783.01.T01:intron 15.0%
!!! TTAGCAATATTTTTTTGAAA+TGG + Chr2:20526229-20526248 None:intergenic 15.0%
!!! TTTAGCTAATATTTAACTTT+AGG - Chr2:20524134-20524153 MsG0280007783.01.T01:intron 15.0%
!! AAAGAAAGAAAAACAATGAA+TGG + Chr2:20523971-20523990 None:intergenic 20.0%
!! AAGAAAGAAAAACAATGAAT+GGG + Chr2:20523970-20523989 None:intergenic 20.0%
!! AAGCACTTATAGAATTATTT+GGG - Chr2:20525915-20525934 MsG0280007783.01.T01:intron 20.0%
!! ATATGATAAACTGTTTGAAA+TGG - Chr2:20526068-20526087 MsG0280007783.01.T01:intron 20.0%
!! ATTCTTAGTTGTATCAAAAT+GGG - Chr2:20524524-20524543 MsG0280007783.01.T01:intron 20.0%
!! CTAAAAACAGAATAATCAAA+AGG - Chr2:20525206-20525225 MsG0280007783.01.T01:intron 20.0%
!! CTTATCATATTGAATATAAC+AGG + Chr2:20525847-20525866 None:intergenic 20.0%
!! TTAACAAATGAATAGGTTAT+TGG + Chr2:20524982-20525001 None:intergenic 20.0%
!! TTATATCCTCAAATAATCTT+TGG - Chr2:20524256-20524275 MsG0280007783.01.T01:CDS 20.0%
!!! AAAAATTACTTTTCTTCATG+GGG - Chr2:20523636-20523655 MsG0280007783.01.T01:intron 20.0%
!!! ATGAAAAAAATATTTTGGCA+AGG + Chr2:20524388-20524407 None:intergenic 20.0%
!!! TAAAGATTTGTTTCATTCTT+TGG - Chr2:20525125-20525144 MsG0280007783.01.T01:intron 20.0%
!!! TTGTGTTTTGTATTGTATAT+AGG - Chr2:20523778-20523797 MsG0280007783.01.T01:intron 20.0%
!!! TTTTTTCTGTTTTTTAGTCT+AGG - Chr2:20523665-20523684 MsG0280007783.01.T01:intron 20.0%
! AAAAAGTAATGAGTGTGTAA+TGG - Chr2:20525288-20525307 MsG0280007783.01.T01:intron 25.0%
! AATTTAATGTGATCAGCTAT+AGG - Chr2:20524912-20524931 MsG0280007783.01.T01:intron 25.0%
! ACAAAGCTTAACAAATGAAT+AGG + Chr2:20524989-20525008 None:intergenic 25.0%
! ATACAATACAAAACACAACA+CGG + Chr2:20523776-20523795 None:intergenic 25.0%
! ATCTTTAATGCTTTCATATG+AGG - Chr2:20525442-20525461 MsG0280007783.01.T01:intron 25.0%
! CATTCTTAGTTGTATCAAAA+TGG - Chr2:20524523-20524542 MsG0280007783.01.T01:intron 25.0%
! GAATACATGAAGAAAAACTT+GGG + Chr2:20525169-20525188 None:intergenic 25.0%
! TGCAATAGAATACATATGAT+TGG + Chr2:20526175-20526194 None:intergenic 25.0%
! TTCTTAGTTGTATCAAAATG+GGG - Chr2:20524525-20524544 MsG0280007783.01.T01:intron 25.0%
! TTGTCAATAAAAGAGACATA+TGG - Chr2:20525039-20525058 MsG0280007783.01.T01:intron 25.0%
! TTTGTTTCATTCTTTGGTAA+TGG - Chr2:20525131-20525150 MsG0280007783.01.T01:intron 25.0%
!! ATGTTATAAGCTATTTCCAT+AGG + Chr2:20525945-20525964 None:intergenic 25.0%
!! GAAGCACTTATAGAATTATT+TGG - Chr2:20525914-20525933 MsG0280007783.01.T01:intron 25.0%
!!! CATTTTGATACAACTAAGAA+TGG + Chr2:20524525-20524544 None:intergenic 25.0%
!!! TGTTTTTTATCTTAACCTTC+CGG + Chr2:20524340-20524359 None:intergenic 25.0%
!!! TTCTAGTCTTGTAACTAAAA+GGG + Chr2:20524048-20524067 None:intergenic 25.0%
AACTAAAAACTCTATACCAC+CGG + Chr2:20523752-20523771 None:intergenic 30.0%
AATACCAGTCTTGATAGAAA+AGG + Chr2:20524865-20524884 None:intergenic 30.0%
AATTTCTAAATCAGCACATG+TGG - Chr2:20525649-20525668 MsG0280007783.01.T01:intron 30.0%
ACATTTCAACAATGCTACAT+TGG - Chr2:20524432-20524451 MsG0280007783.01.T01:intron 30.0%
AGAAACCACATTGAACAAAT+TGG - Chr2:20525412-20525431 MsG0280007783.01.T01:intron 30.0%
ATATGTATTCTATTGCATCC+TGG - Chr2:20526178-20526197 MsG0280007783.01.T01:CDS 30.0%
ATGAAGAAAAACTTGGGAAA+TGG + Chr2:20525163-20525182 None:intergenic 30.0%
ATTGAGTCTAACAACATAGA+AGG + Chr2:20524194-20524213 None:intergenic 30.0%
CAATATGATAAGTGCATCAT+TGG - Chr2:20525855-20525874 MsG0280007783.01.T01:CDS 30.0%
CATTAATGAGAAGGTTTAGA+TGG + Chr2:20525065-20525084 None:intergenic 30.0%
CTATAGCGAATTTGAACAAA+TGG + Chr2:20524750-20524769 None:intergenic 30.0%
CTTATCAGCGTAGTAAATAA+TGG + Chr2:20524601-20524620 None:intergenic 30.0%
GAATGAAACAAATCTTTACC+TGG + Chr2:20525123-20525142 None:intergenic 30.0%
GGAAGGATTAACAAATATAG+CGG - Chr2:20524839-20524858 MsG0280007783.01.T01:intron 30.0%
GGAATACATGAAGAAAAACT+TGG + Chr2:20525170-20525189 None:intergenic 30.0%
GGTAGATGCTAAAGTTAATA+TGG - Chr2:20524068-20524087 MsG0280007783.01.T01:intron 30.0%
GTGATTTCAATTGTATATCG+CGG - Chr2:20524620-20524639 MsG0280007783.01.T01:CDS 30.0%
GTTCAAATTCTACTATGCTA+TGG - Chr2:20524656-20524675 MsG0280007783.01.T01:CDS 30.0%
TAGATATGAGATTTGTGACA+AGG - Chr2:20524098-20524117 MsG0280007783.01.T01:intron 30.0%
TCTATGTTGTTAGACTCAAT+TGG - Chr2:20524194-20524213 MsG0280007783.01.T01:intron 30.0%
TCTTAGTTGTATCAAAATGG+GGG - Chr2:20524526-20524545 MsG0280007783.01.T01:intron 30.0%
TGACACTGTTTGAATATAAG+CGG + Chr2:20526116-20526135 None:intergenic 30.0%
TTTCTATCAAGACTGGTATT+AGG - Chr2:20524865-20524884 MsG0280007783.01.T01:intron 30.0%
! TAATGATGTGCAACAACTTT+TGG + Chr2:20526282-20526301 None:intergenic 30.0%
! TGCAATATCTTTTATGCTCA+AGG + Chr2:20524570-20524589 None:intergenic 30.0%
!! CTTCTAGTCTTGTAACTAAA+AGG + Chr2:20524049-20524068 None:intergenic 30.0%
!! CTTTTAGTTACAAGACTAGA+AGG - Chr2:20524047-20524066 MsG0280007783.01.T01:CDS 30.0%
!!! TTTTTTGGCAATGTAGTGAA+TGG + Chr2:20523620-20523639 None:intergenic 30.0%
AACCTTCTCATTAATGCATC+TGG - Chr2:20525069-20525088 MsG0280007783.01.T01:intron 35.0%
AAGTAATGAGTGTGTAATGG+AGG - Chr2:20525291-20525310 MsG0280007783.01.T01:intron 35.0%
AATGCTACATTGGATAAGTG+AGG - Chr2:20524442-20524461 MsG0280007783.01.T01:intron 35.0%
AATGGTGTTTCCTTAGTTCA+AGG - Chr2:20523520-20523539 MsG0280007783.01.T01:CDS 35.0%
ATCAGCGTAGTAAATAATGG+TGG + Chr2:20524598-20524617 None:intergenic 35.0%
ATGAGGTTATAGAAGCCTTA+GGG - Chr2:20525588-20525607 MsG0280007783.01.T01:intron 35.0%
CTTTCAACAGTCAAATCCAA+AGG + Chr2:20523923-20523942 None:intergenic 35.0%
GAATTATTTGGGAGAACCTA+TGG - Chr2:20525926-20525945 MsG0280007783.01.T01:intron 35.0%
GACTGTTGAAAGTTCTATTG+AGG - Chr2:20523931-20523950 MsG0280007783.01.T01:CDS 35.0%
GATACAACTAAGAATGGCAA+TGG + Chr2:20524519-20524538 None:intergenic 35.0%
GTAATCCTAATGCATCAACT+GGG - Chr2:20523852-20523871 MsG0280007783.01.T01:intron 35.0%
GTCTGACCAAAGATTATTTG+AGG + Chr2:20524265-20524284 None:intergenic 35.0%
TATGAGGTTATAGAAGCCTT+AGG - Chr2:20525587-20525606 MsG0280007783.01.T01:intron 35.0%
TCATCATCTTCTCAAGCTAA+TGG - Chr2:20523502-20523521 MsG0280007783.01.T01:CDS 35.0%
TGGGTTTCTTTATGTGTATG+AGG - Chr2:20525571-20525590 MsG0280007783.01.T01:intron 35.0%
! CAGTTGATGCATTAGGATTA+CGG + Chr2:20523853-20523872 None:intergenic 35.0%
! CTCTTTTATTGACAATGCAG+AGG + Chr2:20525034-20525053 None:intergenic 35.0%
! CTTCTCCAATTTGTTCAATG+TGG + Chr2:20525420-20525439 None:intergenic 35.0%
! GTTACCTTGATAACCAAGAT+AGG + Chr2:20525482-20525501 None:intergenic 35.0%
! TCGACTTCAAATTTTGCCTT+TGG - Chr2:20523904-20523923 MsG0280007783.01.T01:intron 35.0%
! TTAGACACCAAGTTGAGATT+TGG - Chr2:20524019-20524038 MsG0280007783.01.T01:CDS 35.0%
!! ACAAGTGGGTTAACTTAATC+AGG + Chr2:20524794-20524813 None:intergenic 35.0%
!! ATCAGCTATAGGCTTTGTTT+AGG - Chr2:20524923-20524942 MsG0280007783.01.T01:intron 35.0%
!! CAAGTGGGTTAACTTAATCA+GGG + Chr2:20524793-20524812 None:intergenic 35.0%
AACTGGGCTTCTTCATTTGA+AGG - Chr2:20523868-20523887 MsG0280007783.01.T01:intron 40.0%
AATGTCAAGAGCCATGACAA+TGG - Chr2:20526304-20526323 MsG0280007783.01.T01:CDS 40.0%
ACAATGGCAAGTTCTTTGCT+TGG - Chr2:20526320-20526339 MsG0280007783.01.T01:CDS 40.0%
AGAGAAAAGAACATGAAGCG+TGG + Chr2:20523370-20523389 None:intergenic 40.0%
ATATGTCAGCTACTAGTTGG+AGG + Chr2:20524476-20524495 None:intergenic 40.0%
CAAAGAACTTGCCATTGTCA+TGG + Chr2:20526318-20526337 None:intergenic 40.0%
CAATGGCAAGTTCTTTGCTT+GGG - Chr2:20526321-20526340 MsG0280007783.01.T01:CDS 40.0%
CCACTTGTCAGTTTCGAAAT+GGG - Chr2:20524806-20524825 MsG0280007783.01.T01:intron 40.0%
CCATTTCGAAACTGACAAGT+GGG + Chr2:20524808-20524827 None:intergenic 40.0%
CGTAATCCTAATGCATCAAC+TGG - Chr2:20523851-20523870 MsG0280007783.01.T01:intron 40.0%
GAATGGCAATGGTTATAGTG+TGG + Chr2:20524508-20524527 None:intergenic 40.0%
GACATTGGACACAATTGTTG+CGG - Chr2:20523713-20523732 MsG0280007783.01.T01:intron 40.0%
TCATATGAGGTTAATGCCGT+CGG - Chr2:20525455-20525474 MsG0280007783.01.T01:intron 40.0%
TCCAACTAGTAGCTGACATA+TGG - Chr2:20524475-20524494 MsG0280007783.01.T01:intron 40.0%
TCCATATGTCAGCTACTAGT+TGG + Chr2:20524479-20524498 None:intergenic 40.0%
TCTATTGGCGATAATCGTCT+CGG - Chr2:20525750-20525769 MsG0280007783.01.T01:intron 40.0%
TGAAGAAGAGAATGCTCTTC+TGG + Chr2:20523482-20523501 None:intergenic 40.0%
TGCCAGATGCATTAATGAGA+AGG + Chr2:20525074-20525093 None:intergenic 40.0%
TTGTACCAAATAGCACATCG+CGG - Chr2:20524716-20524735 MsG0280007783.01.T01:intron 40.0%
! CAGTAATCTGGAATTCGTCT+GGG + Chr2:20524299-20524318 None:intergenic 40.0%
! CTTTTGGACTGAGTACTCTT+TGG + Chr2:20526266-20526285 None:intergenic 40.0%
AAATGGGAACGTGTCTAGGA+AGG - Chr2:20524822-20524841 MsG0280007783.01.T01:intron 45.0%
AGATCTGTGTCAACTGTACC+AGG + Chr2:20526199-20526218 None:intergenic 45.0%
AGGGTCACCAAATCTCAACT+TGG + Chr2:20524029-20524048 None:intergenic 45.0%
AGTGCAAGGGTTGCATCTAT+TGG - Chr2:20525735-20525754 MsG0280007783.01.T01:intron 45.0%
AGTGTCAAAGACGATCTCGT+TGG - Chr2:20526129-20526148 MsG0280007783.01.T01:intron 45.0%
ATGTGGCCTCTTCTTAAAGC+TGG - Chr2:20525666-20525685 MsG0280007783.01.T01:intron 45.0%
CCCACTTGTCAGTTTCGAAA+TGG - Chr2:20524805-20524824 MsG0280007783.01.T01:intron 45.0%
CCCATTTCGAAACTGACAAG+TGG + Chr2:20524809-20524828 None:intergenic 45.0%
CGGTCCTATCTTGGTTATCA+AGG - Chr2:20525475-20525494 MsG0280007783.01.T01:intron 45.0%
CTATTGGCGATAATCGTCTC+GGG - Chr2:20525751-20525770 MsG0280007783.01.T01:intron 45.0%
GACTCAAACTACATGCCCTA+AGG + Chr2:20525606-20525625 None:intergenic 45.0%
GATAACCAAGATAGGACCGA+CGG + Chr2:20525474-20525493 None:intergenic 45.0%
GCAGCAGATTTGTGAGAACA+CGG - Chr2:20525264-20525283 MsG0280007783.01.T01:intron 45.0%
GGGATGGTCAAGAAATTCCT+TGG - Chr2:20526341-20526360 MsG0280007783.01.T01:CDS 45.0%
TATTGGCGATAATCGTCTCG+GGG - Chr2:20525752-20525771 MsG0280007783.01.T01:intron 45.0%
TCTGGAAGCTCCTTGAACTA+AGG + Chr2:20523533-20523552 None:intergenic 45.0%
TTAAAGCTGGAGGTGGCATT+GGG - Chr2:20525679-20525698 MsG0280007783.01.T01:intron 45.0%
TTAGTTCAAGGAGCTTCCAG+AGG - Chr2:20523532-20523551 MsG0280007783.01.T01:CDS 45.0%
TTCGAAATGGGAACGTGTCT+AGG - Chr2:20524818-20524837 MsG0280007783.01.T01:intron 45.0%
! AGAAGCCCAGTTGATGCATT+AGG + Chr2:20523860-20523879 None:intergenic 45.0%
! GAATTCAAGACCGATTCCTC+TGG + Chr2:20523551-20523570 None:intergenic 45.0%
! GCAGTAATCTGGAATTCGTC+TGG + Chr2:20524300-20524319 None:intergenic 45.0%
! TTGTTCCGCGATGTGCTATT+TGG + Chr2:20524724-20524743 None:intergenic 45.0%
!! AGCCATGGAAGTGTTATGAG+TGG + Chr2:20523431-20523450 None:intergenic 45.0%
!! ATGGAAGTGTTATGAGTGGG+GGG + Chr2:20523427-20523446 None:intergenic 45.0%
!! CATGGAAGTGTTATGAGTGG+GGG + Chr2:20523428-20523447 None:intergenic 45.0%
!! CCATGGAAGTGTTATGAGTG+GGG + Chr2:20523429-20523448 None:intergenic 45.0%
!! GCCATGGAAGTGTTATGAGT+GGG + Chr2:20523430-20523449 None:intergenic 45.0%
!! TGTGGCTAGTTTGAGTGCAA+GGG - Chr2:20525722-20525741 MsG0280007783.01.T01:intron 45.0%
!! TTGTGGCTAGTTTGAGTGCA+AGG - Chr2:20525721-20525740 MsG0280007783.01.T01:intron 45.0%
!!! CTGTTTTTAGTGCGTGCAAG+CGG + Chr2:20525196-20525215 None:intergenic 45.0%
!!! TGTTTTTAGTGCGTGCAAGC+GGG + Chr2:20525195-20525214 None:intergenic 45.0%
ACAGGCATAGACACGGACAT+TGG - Chr2:20523698-20523717 MsG0280007783.01.T01:intron 50.0%
ATCTTAACCTTCCGGCACCA+AGG + Chr2:20524332-20524351 None:intergenic 50.0%
ATTACTGCTGCCCTCTTCCT+TGG - Chr2:20524312-20524331 MsG0280007783.01.T01:intron 50.0%
ATTGGCGATAATCGTCTCGG+GGG - Chr2:20525753-20525772 MsG0280007783.01.T01:intron 50.0%
CAAGGAGCTTCCAGAGGAAT+CGG - Chr2:20523538-20523557 MsG0280007783.01.T01:CDS 50.0%
CACTGACACAGGCATAGACA+CGG - Chr2:20523691-20523710 MsG0280007783.01.T01:intron 50.0%
CCCCACTCATAACACTTCCA+TGG - Chr2:20523426-20523445 MsG0280007783.01.T01:CDS 50.0%
CCTCTTCTTAAAGCTGGAGG+TGG - Chr2:20525672-20525691 MsG0280007783.01.T01:intron 50.0%
CTTAAAGCTGGAGGTGGCAT+TGG - Chr2:20525678-20525697 MsG0280007783.01.T01:intron 50.0%
GACACAATTGTTGCGGACAC+CGG - Chr2:20523720-20523739 MsG0280007783.01.T01:intron 50.0%
GGAAAGAAGTGGTGCAGTTG+TGG - Chr2:20525704-20525723 MsG0280007783.01.T01:intron 50.0%
GGCAAGTTCTTTGCTTGGGA+TGG - Chr2:20526325-20526344 MsG0280007783.01.T01:CDS 50.0%
GTTGGAGTTTGCGAGGAAGA+AGG - Chr2:20526147-20526166 MsG0280007783.01.T01:intron 50.0%
TAATGCCGTCGGTCCTATCT+TGG - Chr2:20525466-20525485 MsG0280007783.01.T01:intron 50.0%
TGGCCTCTTCTTAAAGCTGG+AGG - Chr2:20525669-20525688 MsG0280007783.01.T01:intron 50.0%
TGGCTAGTGATAGAAGCCGA+GGG + Chr2:20523462-20523481 None:intergenic 50.0%
TTACCTGGTTGCAGCACTTC+AGG + Chr2:20525108-20525127 None:intergenic 50.0%
! GCGGCCTTTTCTATCAAGAC+TGG - Chr2:20524858-20524877 MsG0280007783.01.T01:intron 50.0%
! TCGGGGGTTGGCATTCATAT+CGG - Chr2:20525769-20525788 MsG0280007783.01.T01:intron 50.0%
!! AGTCTAGGAAGCACTGACAC+AGG - Chr2:20523680-20523699 MsG0280007783.01.T01:intron 50.0%
!! ATACCTGAAGTGCTGCAACC+AGG - Chr2:20525102-20525121 MsG0280007783.01.T01:intron 50.0%
!! CCACCTCCAGCTTTAAGAAG+AGG + Chr2:20525675-20525694 None:intergenic 50.0%
!!! GTTTTTAGTGCGTGCAAGCG+GGG + Chr2:20525194-20525213 None:intergenic 50.0%
CGATCTCGTTGGAGTTTGCG+AGG - Chr2:20526140-20526159 MsG0280007783.01.T01:intron 55.0%
CTGGCTAGTGATAGAAGCCG+AGG + Chr2:20523463-20523482 None:intergenic 55.0%
GGAAGAGGGCAGCAGTAATC+TGG + Chr2:20524311-20524330 None:intergenic 55.0%
GGCTAGTGATAGAAGCCGAG+GGG + Chr2:20523461-20523480 None:intergenic 55.0%
! GAAGTGTTATGAGTGGGGGG+TGG + Chr2:20523424-20523443 None:intergenic 55.0%
! GGCATTGGGACGGAAAGAAG+TGG - Chr2:20525693-20525712 MsG0280007783.01.T01:intron 55.0%
ACCTTCCGGCACCAAGGAAG+AGG + Chr2:20524326-20524345 None:intergenic 60.0%
CCATGGCTTCACGTTCCCCT+CGG - Chr2:20523443-20523462 MsG0280007783.01.T01:CDS 60.0%
CCTTCCGGCACCAAGGAAGA+GGG + Chr2:20524325-20524344 None:intergenic 60.0%
GCGATAATCGTCTCGGGGGT+TGG - Chr2:20525757-20525776 MsG0280007783.01.T01:intron 60.0%
TCTATACCACCGGCACGTGC+CGG + Chr2:20523742-20523761 None:intergenic 60.0%
TTTAGTGCGTGCAAGCGGGG+TGG + Chr2:20525191-20525210 None:intergenic 60.0%
! AGCTGGAGGTGGCATTGGGA+CGG - Chr2:20525683-20525702 MsG0280007783.01.T01:intron 60.0%
CCGAGGGGAACGTGAAGCCA+TGG + Chr2:20523446-20523465 None:intergenic 65.0%
! GCTGCCCTCTTCCTTGGTGC+CGG - Chr2:20524318-20524337 MsG0280007783.01.T01:intron 65.0%
!! CCCTCTTCCTTGGTGCCGGA+AGG - Chr2:20524322-20524341 MsG0280007783.01.T01:intron 65.0%
TTGCGGACACCGGCACGTGC+CGG - Chr2:20523730-20523749 MsG0280007783.01.T01:intron 70.0%
! CGGACACCGGCACGTGCCGG+TGG - Chr2:20523733-20523752 MsG0280007783.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 20523364 20526366 20523364 ID=MsG0280007783.01;Name=MsG0280007783.01
Chr2 mRNA 20523364 20526366 20523364 ID=MsG0280007783.01.T01;Parent=MsG0280007783.01;Name=MsG0280007783.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|6|0|308
Chr2 exon 20526160 20526366 20526160 ID=MsG0280007783.01.T01:exon:10482;Parent=MsG0280007783.01.T01
Chr2 exon 20525778 20525930 20525778 ID=MsG0280007783.01.T01:exon:10481;Parent=MsG0280007783.01.T01
Chr2 exon 20524607 20524700 20524607 ID=MsG0280007783.01.T01:exon:10480;Parent=MsG0280007783.01.T01
Chr2 exon 20524234 20524316 20524234 ID=MsG0280007783.01.T01:exon:10479;Parent=MsG0280007783.01.T01
Chr2 exon 20523914 20524067 20523914 ID=MsG0280007783.01.T01:exon:10478;Parent=MsG0280007783.01.T01
Chr2 exon 20523364 20523599 20523364 ID=MsG0280007783.01.T01:exon:10477;Parent=MsG0280007783.01.T01
Chr2 CDS 20526160 20526366 20526160 ID=MsG0280007783.01.T01:cds;Parent=MsG0280007783.01.T01
Chr2 CDS 20525778 20525930 20525778 ID=MsG0280007783.01.T01:cds;Parent=MsG0280007783.01.T01
Chr2 CDS 20524607 20524700 20524607 ID=MsG0280007783.01.T01:cds;Parent=MsG0280007783.01.T01
Chr2 CDS 20524234 20524316 20524234 ID=MsG0280007783.01.T01:cds;Parent=MsG0280007783.01.T01
Chr2 CDS 20523914 20524067 20523914 ID=MsG0280007783.01.T01:cds;Parent=MsG0280007783.01.T01
Chr2 CDS 20523364 20523599 20523364 ID=MsG0280007783.01.T01:cds;Parent=MsG0280007783.01.T01
Gene Sequence

>MsG0280007783.01.T01

TTGCCACGCTTCATGTTCTTTTCTCTTTCATATGATTCTCTATTGCTATCGCTATTGCCACCCCCCACTCATAACACTTCCATGGCTTCACGTTCCCCTCGGCTTCTATCACTAGCCAGAAGAGCATTCTCTTCTTCATCATCATCTTCTCAAGCTAATGGTGTTTCCTTAGTTCAAGGAGCTTCCAGAGGAATCGGTCTTGAATTCGTGAAACAATTGTTAGAGAAGAATGATAAAGAGCATGTTGTTGCTACTTGCCGTAATCCTAATGCATCAACTGGGCTTCTTCATTTGAAGGATAGATTTGATGATCGACTTCAAATTTTGCCTTTGGATTTGACTGTTGAAAGTTCTATTGAGGCCTCTGCATTGTCAATAAAAGAGACATATGGCCATCTAAACCTTCTCATTAATGCATCTGGCATTCTTTCAATACCTGAAGTGCTGCAACCAGAAACCACATTGAACAAATTGGAGAAGTCATCTTTAATGCTTTCATATGAGGTTAATGCCGTCGGTCCTATCTTGGTTATCAAGCACATGTGGCCTCTTCTTAAAGCTGGAGGTGGCATTGGGACGGAAAGAAGTGGTGCAGTTGTGGCTAGTTTGAGTGCAAGGGTTGCATCTATTGGCGATAATCGTCTCGGGGGTTGGCATTCATATCGGTCTTCAAAGACTGCTCTTAATCAATTGTCAAAGACGATCTCGTTGGAGTTTGCGAGGAAGAAGGATCCAATCATATGTATTCTATTGCATCCTGGTACAGTTGACACAGATCTTTCTAAGCCATTTCAAAAAAATATTGCTAAAGAAAAGCTCTTCACCAAAGAGTACTCAGTCCAAAAGTTGTTGCACATCATTAACAATGTCAAGAGCCATGACAATGGCAAGTTCTTTGCTTGGGATGGTCAAGAAATTCCTTGGTAA

Protein sequence

>MsG0280007783.01.T01

LPRFMFFSLSYDSLLLSLLPPPTHNTSMASRSPRLLSLARRAFSSSSSSSQANGVSLVQGASRGIGLEFVKQLLEKNDKEHVVATCRNPNASTGLLHLKDRFDDRLQILPLDLTVESSIEASALSIKETYGHLNLLINASGILSIPEVLQPETTLNKLEKSSLMLSYEVNAVGPILVIKHMWPLLKAGGGIGTERSGAVVASLSARVASIGDNRLGGWHSYRSSKTALNQLSKTISLEFARKKDPIICILLHPGTVDTDLSKPFQKNIAKEKLFTKEYSVQKLLHIINNVKSHDNGKFFAWDGQEIPW*