AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004957.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004957.01.T01 MTR_1g090380 90.588 255 12 2 1 255 1 243 9.42e-166 460
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004957.01.T01 AT2G38680 65.504 258 79 5 1 255 41 291 1.60e-111 325

Find 90 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGGAGGATATCAAAT+TGG 0.201664 1:-84952815 MsG0180004957.01.T01:exon
ATGCCACATTAACAAAGTTT+TGG 0.238917 1:-84952215 MsG0180004957.01.T01:CDS
CGCTGGTCCTCAAAAGCTTC+AGG 0.241520 1:-84952728 MsG0180004957.01.T01:intron
CTTCATAAGGAGAAATTAAT+AGG 0.248523 1:+84949887 None:intergenic
TCCAATATTAACAGGTTCTA+AGG 0.257059 1:-84951292 MsG0180004957.01.T01:intron
GCTAAGAGTATATGGTTAAC+TGG 0.261941 1:+84949946 None:intergenic
AGAACCAATGTTCTCCTTCT+TGG 0.265210 1:-84950657 MsG0180004957.01.T01:CDS
TTCATATAACTGCTGCCTTT+TGG 0.338973 1:+84952034 None:intergenic
ATGATACTGCTAAGAGTATA+TGG 0.344765 1:+84949938 None:intergenic
TCACCGAATCGTTCGTGAAC+AGG 0.376885 1:+84950720 None:intergenic
AGTTTGTTGTGGAGCAAAAC+AGG 0.387622 1:+84952766 None:intergenic
AAATGAGCATGCTCTTGATA+TGG 0.389669 1:-84950748 MsG0180004957.01.T01:CDS
ACTTGTTAGCATTCTTCATA+AGG 0.393716 1:+84949874 None:intergenic
TTGTGGAAAACATTTGGAAA+TGG 0.410077 1:-84952830 MsG0180004957.01.T01:exon
GAAATGGAGGATATCAAATT+GGG 0.419430 1:-84952814 MsG0180004957.01.T01:CDS
CCTGTATTAATATTCTCTGC+AGG 0.422018 1:-84951441 MsG0180004957.01.T01:CDS
CCCTTGGGCTGGAAGAGAAA+AGG 0.437854 1:-84951983 MsG0180004957.01.T01:CDS
TTTCCCCTCCTGGATATGGC+TGG 0.439476 1:-84949825 MsG0180004957.01.T01:three_prime_UTR
CCTGCAGAGAATATTAATAC+AGG 0.451901 1:+84951441 None:intergenic
ACGCATGCTCTTCTTATTGA+AGG 0.454576 1:-84951714 MsG0180004957.01.T01:CDS
TGGTGATCACACTGGAGACT+TGG 0.455229 1:-84950637 MsG0180004957.01.T01:CDS
GGAGAAATTAATAGGAACCT+TGG 0.457417 1:+84949895 None:intergenic
GAACGATTCGGTGATATTGA+TGG 0.458869 1:-84950711 MsG0180004957.01.T01:CDS
GAGAAATTAATAGGAACCTT+GGG 0.466094 1:+84949896 None:intergenic
CTGGATTATCCTGCTGCAAA+AGG 0.467977 1:+84952066 None:intergenic
AACCCAAAACTTTGTTAATG+TGG 0.470399 1:+84952212 None:intergenic
ATGTGAAGATAGTATCCAAC+AGG 0.474848 1:-84951244 MsG0180004957.01.T01:CDS
GCGCCTGTTCACGAACGATT+CGG 0.479515 1:-84950723 MsG0180004957.01.T01:CDS
CTTGCTGCAATTCGTTCCGC+TGG 0.481743 1:-84952745 MsG0180004957.01.T01:CDS
AGTTGGTGGTGACGATGGAT+TGG 0.487760 1:+84953000 None:intergenic
CTTGAGCAAGTCATTGTCAT+CGG 0.490371 1:+84950683 None:intergenic
GCTTACATAGTTAAGTTAAG+TGG 0.491803 1:+84953073 None:intergenic
GCTAATCGCCAGCCATATCC+AGG 0.493885 1:+84949817 None:intergenic
TGGTGACGATGGATTGGAGT+TGG 0.494711 1:+84953006 None:intergenic
AGCTTCATTGTAAACATACA+TGG 0.498944 1:+84949760 None:intergenic
AGCAAGTCATTGTCATCGGT+TGG 0.500842 1:+84950687 None:intergenic
TACGATACTCGAATTTCTGT+GGG 0.505866 1:-84950595 MsG0180004957.01.T01:three_prime_UTR
TGGAAAACATTTGGAAATGG+AGG 0.511488 1:-84952827 MsG0180004957.01.T01:exon
CACCTTTAAAAGATACAAGT+TGG 0.511666 1:+84951204 None:intergenic
ATCCAGAATATGATGCCAAA+AGG 0.511735 1:-84952049 MsG0180004957.01.T01:CDS
ATTGTTAAATACCATCCTGT+TGG 0.514081 1:+84951229 None:intergenic
ATATGAACATTACCATCCAT+TGG 0.515894 1:-84952018 MsG0180004957.01.T01:CDS
ATTAGCAGTTATGTTATGCT+AGG 0.518158 1:-84949800 MsG0180004957.01.T01:three_prime_UTR
CACTTTGATAACTTCCCACA+TGG 0.519877 1:+84950005 None:intergenic
CTGTATTAATATTCTCTGCA+GGG 0.521088 1:-84951440 MsG0180004957.01.T01:CDS
CTCCTTCTTGGTGATCACAC+TGG 0.541831 1:-84950645 MsG0180004957.01.T01:CDS
GGTGATCACACTGGAGACTT+GGG 0.548044 1:-84950636 MsG0180004957.01.T01:CDS
GAATTGCAGCAAGTTTGTTG+TGG 0.553040 1:+84952755 None:intergenic
GTCTCTCATATGTGCTCAAG+TGG 0.559631 1:-84949982 MsG0180004957.01.T01:three_prime_UTR
GCTACACTTCTTCAACATCA+AGG 0.560582 1:-84952956 MsG0180004957.01.T01:five_prime_UTR
AAAGTGACGTGGGAGAAAGT+TGG 0.564371 1:+84952983 None:intergenic
GAGAAAGTTGGTGGTGACGA+TGG 0.566081 1:+84952995 None:intergenic
CTAAGAGTATATGGTTAACT+GGG 0.566861 1:+84949947 None:intergenic
TAGGAGAAAATTCCAATGGA+TGG 0.567633 1:+84952006 None:intergenic
TGATGTTGAAGAAGTGTAGC+GGG 0.570667 1:+84952959 None:intergenic
TTACGATACTCGAATTTCTG+TGG 0.585256 1:-84950596 MsG0180004957.01.T01:three_prime_UTR
TGACGATGGATTGGAGTTGG+AGG 0.602766 1:+84953009 None:intergenic
GAAGATTCGATTGCTGACAT+TGG 0.608434 1:-84951504 MsG0180004957.01.T01:intron
GGGTTCAGAATTGACGCTGG+TGG 0.610837 1:-84952794 MsG0180004957.01.T01:CDS
AAAGGAAACTCATGGTAGAG+TGG 0.614036 1:-84951965 MsG0180004957.01.T01:intron
TTCTCTTCCAGCCCAAGGGT+AGG 0.615641 1:+84951987 None:intergenic
CTCCAGTGTGATCACCAAGA+AGG 0.618740 1:+84950643 None:intergenic
CATGCTCTTCTTATTGAAGG+AGG 0.621492 1:-84951711 MsG0180004957.01.T01:CDS
GGTTCAGAATTGACGCTGGT+GGG 0.621982 1:-84952793 MsG0180004957.01.T01:CDS
AGGGTAGGAGAAAATTCCAA+TGG 0.624608 1:+84952002 None:intergenic
GGAAGAGAAAAGGAAACTCA+TGG 0.628987 1:-84951973 MsG0180004957.01.T01:CDS
GTGACGTGGGAGAAAGTTGG+TGG 0.633859 1:+84952986 None:intergenic
ATCGCCAGCCATATCCAGGA+GGG 0.634611 1:+84949821 None:intergenic
GCTTGCTGATATCATTGAAG+AGG 0.634896 1:-84951418 MsG0180004957.01.T01:intron
AACAGGATGGTATTTAACAA+TGG 0.634907 1:-84951227 MsG0180004957.01.T01:CDS
GGAGACTTGGGAATGTCTGA+TGG 0.640328 1:-84950624 MsG0180004957.01.T01:CDS
GAGTCATTTCTAGGCAGTCA+TGG 0.643405 1:-84952089 MsG0180004957.01.T01:intron
TGCAGAATGATGCGCCCATG+TGG 0.644000 1:-84950020 MsG0180004957.01.T01:intron
GGCGATAACTCATTTGAGTG+TGG 0.645636 1:+84953030 None:intergenic
GCTTCATTGTAAACATACAT+GGG 0.648678 1:+84949761 None:intergenic
ACTTTGATAACTTCCCACAT+GGG 0.653578 1:+84950006 None:intergenic
GAAGATAGTATCCAACAGGA+TGG 0.654156 1:-84951240 MsG0180004957.01.T01:CDS
ATCACCAAGAAGGAGAACAT+TGG 0.655582 1:+84950653 None:intergenic
TCTCTCATATGTGCTCAAGT+GGG 0.662286 1:-84949981 MsG0180004957.01.T01:three_prime_UTR
GTGTAGCGGGAAAAGTGACG+TGG 0.663698 1:+84952972 None:intergenic
ATTGGGTTCAGAATTGACGC+TGG 0.663874 1:-84952797 MsG0180004957.01.T01:CDS
AAAATTACATGCAATAAGGG+GGG 0.667560 1:+84952886 None:intergenic
GCAGAATGATGCGCCCATGT+GGG 0.682785 1:-84950019 MsG0180004957.01.T01:intron
TCGCCAGCCATATCCAGGAG+GGG 0.683257 1:+84949822 None:intergenic
TTGATGTTGAAGAAGTGTAG+CGG 0.688175 1:+84952958 None:intergenic
TAAGTGAGTTCTCAACGTTG+TGG 0.688216 1:+84950280 None:intergenic
TGTAGCGGGAAAAGTGACGT+GGG 0.689625 1:+84952973 None:intergenic
GTGACCTGTAATTCATGCAG+AGG 0.707599 1:-84953159 None:intergenic
CATGTGGGAAGTTATCAAAG+TGG 0.709745 1:-84950004 MsG0180004957.01.T01:three_prime_UTR
AATCGCCAGCCATATCCAGG+AGG 0.724907 1:+84949820 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAATCTTAGAATT+TGG + Chr1:84950630-84950649 None:intergenic 10.0%
!! AAATATAAATCTTAGAATTT+GGG + Chr1:84950629-84950648 None:intergenic 10.0%
!! ATAATAACTAAATTAATGTT+TGG + Chr1:84952722-84952741 None:intergenic 10.0%
!!! ATGTAATTTTTTTTCTTTTA+AGG - Chr1:84950019-84950038 MsG0180004957.01.T01:intron 10.0%
!!! ATTCTGTTTTTTTTTTTTTA+TGG - Chr1:84951011-84951030 MsG0180004957.01.T01:intron 10.0%
!!! ATTTATATTTTCTTTTTTGT+AGG - Chr1:84950639-84950658 MsG0180004957.01.T01:CDS 10.0%
!!! TGTAATTTTTTTTCTTTTAA+GGG - Chr1:84950020-84950039 MsG0180004957.01.T01:intron 10.0%
!!! TTCTGTTTTTTTTTTTTTAT+GGG - Chr1:84951012-84951031 MsG0180004957.01.T01:intron 10.0%
!! AAAAAAAATTACATGCAATA+AGG + Chr1:84950013-84950032 None:intergenic 15.0%
!! AAAAAAATTACATGCAATAA+GGG + Chr1:84950012-84950031 None:intergenic 15.0%
!! AAAAATAACAAAATGGAAAA+TGG + Chr1:84951417-84951436 None:intergenic 15.0%
!! ATTAATTATTATGTAATTCC+CGG + Chr1:84951796-84951815 None:intergenic 15.0%
!!! TCATCTTAAGTTTTTATATT+CGG + Chr1:84950507-84950526 None:intergenic 15.0%
!! AAAAAATTACATGCAATAAG+GGG + Chr1:84950011-84950030 None:intergenic 20.0%
!! AAACTCAATTATCAATGAAA+TGG + Chr1:84950202-84950221 None:intergenic 20.0%
!! AACTCAATTATCAATGAAAT+GGG + Chr1:84950201-84950220 None:intergenic 20.0%
!! AATACACAATAAATGAAAGT+TGG + Chr1:84951725-84951744 None:intergenic 20.0%
!! ATATATTTGTCAAAGAAAGA+TGG + Chr1:84951304-84951323 None:intergenic 20.0%
!! CATAATAATTAATTGCCTTT+AGG - Chr1:84951803-84951822 MsG0180004957.01.T01:intron 20.0%
!! TAACTAAATTAATGTTTGGA+AGG + Chr1:84952718-84952737 None:intergenic 20.0%
!! TAATTGCATAACACAAAATT+GGG - Chr1:84950266-84950285 MsG0180004957.01.T01:three_prime_UTR 20.0%
!!! AAAGTCTATTTGTTTTATGT+TGG - Chr1:84951502-84951521 MsG0180004957.01.T01:CDS 20.0%
!!! ATTTTGTATATGAGAAAACA+AGG + Chr1:84952000-84952019 None:intergenic 20.0%
!!! TATGCAAATATATTTTTCAG+AGG - Chr1:84951770-84951789 MsG0180004957.01.T01:intron 20.0%
!!! TGATATGTTCATTTTATATC+AGG - Chr1:84951336-84951355 MsG0180004957.01.T01:intron 20.0%
!!! TTTCCATTTTGTTATTTTTC+AGG - Chr1:84951418-84951437 MsG0180004957.01.T01:intron 20.0%
! AAAAATTACATGCAATAAGG+GGG + Chr1:84950010-84950029 None:intergenic 25.0%
! AATAGTCATGTAACATACTT+TGG + Chr1:84950720-84950739 None:intergenic 25.0%
! ACCAGAAAAAAAATTAAGTC+AGG + Chr1:84952573-84952592 None:intergenic 25.0%
! ACTCAATTATCAATGAAATG+GGG + Chr1:84950200-84950219 None:intergenic 25.0%
! ATTTAATTATGTTTAAGCCC+TGG - Chr1:84951873-84951892 MsG0180004957.01.T01:intron 25.0%
! CAAGCATTATTATATAGTGT+GGG + Chr1:84950374-84950393 None:intergenic 25.0%
! CCAGAAAAAAAATTAAGTCA+GGG + Chr1:84952419-84952438 None:intergenic 25.0%
! CTTCATAAGGAGAAATTAAT+AGG + Chr1:84953008-84953027 None:intergenic 25.0%
! CTTCCTGAAAAATAACAAAA+TGG + Chr1:84951424-84951443 None:intergenic 25.0%
! GAGAAGTAAAAATTAAGAAC+TGG + Chr1:84952085-84952104 None:intergenic 25.0%
! GCAAGTTAAAATTAGATACT+CGG + Chr1:84952841-84952860 None:intergenic 25.0%
! GTAATTGCATAACACAAAAT+TGG - Chr1:84950265-84950284 MsG0180004957.01.T01:three_prime_UTR 25.0%
! TATTTCTTATGTTAAGTACC+AGG - Chr1:84952804-84952823 MsG0180004957.01.T01:CDS 25.0%
! TCAAGCATTATTATATAGTG+TGG + Chr1:84950375-84950394 None:intergenic 25.0%
! TGTAAAATTGAGATACTAGT+GGG - Chr1:84950421-84950440 MsG0180004957.01.T01:intron 25.0%
! TTGTAAAATTGAGATACTAG+TGG - Chr1:84950420-84950439 MsG0180004957.01.T01:intron 25.0%
! TTTAACAAAATCACAGCAAT+TGG + Chr1:84952502-84952521 None:intergenic 25.0%
! TTTATTGTGTATTTGTTTGC+TGG - Chr1:84951732-84951751 MsG0180004957.01.T01:intron 25.0%
!! ATCTTCCTATGATTTGTATA+AGG - Chr1:84952766-84952785 MsG0180004957.01.T01:CDS 25.0%
!! ATTTCTCTTCATTTTCTTGT+CGG - Chr1:84951539-84951558 MsG0180004957.01.T01:intron 25.0%
!! GTATCTCAATTTTACAAAAG+TGG + Chr1:84950417-84950436 None:intergenic 25.0%
!! TAATGCTAACATAGCTTTTA+GGG - Chr1:84951237-84951256 MsG0180004957.01.T01:CDS 25.0%
!! TACTATCTTCACATTTTTGA+AGG + Chr1:84951642-84951661 None:intergenic 25.0%
!!! AGCTTTTGATGTTGTTTTAA+TGG - Chr1:84952648-84952667 MsG0180004957.01.T01:intron 25.0%
!!! ATTTTGTTGTGGAAAACATT+TGG - Chr1:84950056-84950075 MsG0180004957.01.T01:intron 25.0%
!!! ATTTTGTTTTCCCATTTTTC+TGG - Chr1:84949791-84949810 MsG0180004957.01.T01:three_prime_UTR 25.0%
!!! CCTGACTTAATTTTTTTTCT+GGG - Chr1:84952417-84952436 MsG0180004957.01.T01:intron 25.0%
!!! CTTAGATTTGGTGTATTATT+AGG - Chr1:84951146-84951165 MsG0180004957.01.T01:intron 25.0%
!!! TTAACAAAGTTTTGGGTTAA+TGG - Chr1:84950685-84950704 MsG0180004957.01.T01:CDS 25.0%
AAAATTACATGCAATAAGGG+GGG + Chr1:84950009-84950028 None:intergenic 30.0%
AAAGGTAAAAAAGAGAAGAG+GGG + Chr1:84949980-84949999 None:intergenic 30.0%
AACAGGATGGTATTTAACAA+TGG - Chr1:84951665-84951684 MsG0180004957.01.T01:CDS 30.0%
AACCCAAAACTTTGTTAATG+TGG + Chr1:84950683-84950702 None:intergenic 30.0%
AGCTTCATTGTAAACATACA+TGG + Chr1:84953135-84953154 None:intergenic 30.0%
ATATGAACATTACCATCCAT+TGG - Chr1:84950874-84950893 MsG0180004957.01.T01:intron 30.0%
ATTAATGTTTGGAAGGAACA+AGG + Chr1:84952711-84952730 None:intergenic 30.0%
ATTAGCAGTTATGTTATGCT+AGG - Chr1:84953092-84953111 MsG0180004957.01.T01:five_prime_UTR 30.0%
ATTGTTAAATACCATCCTGT+TGG + Chr1:84951666-84951685 None:intergenic 30.0%
CCCAGAAAAAAAATTAAGTC+AGG + Chr1:84952420-84952439 None:intergenic 30.0%
CTCCAAAAATTCAAAAAGCT+CGG + Chr1:84951272-84951291 None:intergenic 30.0%
CTGTATTAATATTCTCTGCA+GGG - Chr1:84951452-84951471 MsG0180004957.01.T01:CDS 30.0%
GAAAGGTAAAAAAGAGAAGA+GGG + Chr1:84949981-84950000 None:intergenic 30.0%
GAAATGGAGGATATCAAATT+GGG - Chr1:84950078-84950097 MsG0180004957.01.T01:intron 30.0%
GAGAAATTAATAGGAACCTT+GGG + Chr1:84952999-84953018 None:intergenic 30.0%
GAGCTCAATTAATGTCTATA+AGG - Chr1:84952374-84952393 MsG0180004957.01.T01:intron 30.0%
GCTTACATAGTTAAGTTAAG+TGG + Chr1:84949822-84949841 None:intergenic 30.0%
GCTTCATTGTAAACATACAT+GGG + Chr1:84953134-84953153 None:intergenic 30.0%
GTAACTAGTAAGTAAACTCT+GGG + Chr1:84951058-84951077 None:intergenic 30.0%
TAACTAGTAAGTAAACTCTG+GGG + Chr1:84951057-84951076 None:intergenic 30.0%
TATCTAATCGAGTCATTTCT+AGG - Chr1:84950794-84950813 MsG0180004957.01.T01:intron 30.0%
TCCAATATTAACAGGTTCTA+AGG - Chr1:84951600-84951619 MsG0180004957.01.T01:intron 30.0%
TCCTACAAAACAGATTTGTA+AGG + Chr1:84950593-84950612 None:intergenic 30.0%
TGTAACTAGTAAGTAAACTC+TGG + Chr1:84951059-84951078 None:intergenic 30.0%
TGTCACCTTATACAAATCAT+AGG + Chr1:84952774-84952793 None:intergenic 30.0%
TTGATGCTGTAACTTAGATT+TGG - Chr1:84951134-84951153 MsG0180004957.01.T01:intron 30.0%
TTGTGGAAAACATTTGGAAA+TGG - Chr1:84950062-84950081 MsG0180004957.01.T01:intron 30.0%
! ACCTTACAAATCTGTTTTGT+AGG - Chr1:84950589-84950608 MsG0180004957.01.T01:three_prime_UTR 30.0%
! ACTTGTTAGCATTCTTCATA+AGG + Chr1:84953021-84953040 None:intergenic 30.0%
! ATGATACTGCTAAGAGTATA+TGG + Chr1:84952957-84952976 None:intergenic 30.0%
! ATGCCACATTAACAAAGTTT+TGG - Chr1:84950677-84950696 MsG0180004957.01.T01:CDS 30.0%
! CACCTTTAAAAGATACAAGT+TGG + Chr1:84951691-84951710 None:intergenic 30.0%
! CTAAGAGTATATGGTTAACT+GGG + Chr1:84952948-84952967 None:intergenic 30.0%
! CTAATGCTAACATAGCTTTT+AGG - Chr1:84951236-84951255 MsG0180004957.01.T01:CDS 30.0%
! GTGTTTAAGAGTCTCATTTT+TGG - Chr1:84950453-84950472 MsG0180004957.01.T01:intron 30.0%
! TCCTAATTTTTGACGTGTAA+GGG + Chr1:84950762-84950781 None:intergenic 30.0%
! TCGTTTTCTACATTTTGTTG+TGG - Chr1:84950045-84950064 MsG0180004957.01.T01:intron 30.0%
! TGCCACATTAACAAAGTTTT+GGG - Chr1:84950678-84950697 MsG0180004957.01.T01:CDS 30.0%
! TTCCGAGCTTTTTGAATTTT+TGG - Chr1:84951267-84951286 MsG0180004957.01.T01:CDS 30.0%
! TTCCTAATTTTTGACGTGTA+AGG + Chr1:84950763-84950782 None:intergenic 30.0%
!! AAATATATTTTTCAGAGGCC+GGG - Chr1:84951775-84951794 MsG0180004957.01.T01:intron 30.0%
!! AGATTTGGTGTATTATTAGG+TGG - Chr1:84951149-84951168 MsG0180004957.01.T01:intron 30.0%
!! ATTTGGTGTATTATTAGGTG+GGG - Chr1:84951151-84951170 MsG0180004957.01.T01:intron 30.0%
!! CAAATATATTTTTCAGAGGC+CGG - Chr1:84951774-84951793 MsG0180004957.01.T01:intron 30.0%
!! CATTTTTGGAGGGTTTTTTT+GGG - Chr1:84950467-84950486 MsG0180004957.01.T01:intron 30.0%
!! GATTTGGTGTATTATTAGGT+GGG - Chr1:84951150-84951169 MsG0180004957.01.T01:intron 30.0%
!! TACTTCTCAATTTTGATCAC+AGG - Chr1:84952097-84952116 MsG0180004957.01.T01:intron 30.0%
!! TCATTTTTGGAGGGTTTTTT+TGG - Chr1:84950466-84950485 MsG0180004957.01.T01:intron 30.0%
!! TTAAGAGTCTCATTTTTGGA+GGG - Chr1:84950457-84950476 MsG0180004957.01.T01:intron 30.0%
!! TTAATGGTAAGTTGATTAGC+TGG - Chr1:84952664-84952683 MsG0180004957.01.T01:intron 30.0%
!! TTTAAGAGTCTCATTTTTGG+AGG - Chr1:84950456-84950475 MsG0180004957.01.T01:intron 30.0%
!!! CCCTGACTTAATTTTTTTTC+TGG - Chr1:84952416-84952435 MsG0180004957.01.T01:intron 30.0%
!!! CTATTTGTTTTATGTTGGCA+AGG - Chr1:84951507-84951526 MsG0180004957.01.T01:intron 30.0%
!!! TCGCTTTTTCCAATATTAAC+AGG - Chr1:84951592-84951611 MsG0180004957.01.T01:intron 30.0%
AAATCACAGCAATTAGAGTC+TGG + Chr1:84952345-84952364 None:intergenic 35.0%
AAATGAGCATGCTCTTGATA+TGG - Chr1:84952144-84952163 MsG0180004957.01.T01:intron 35.0%
AACTAGTAAGTAAACTCTGG+GGG + Chr1:84951056-84951075 None:intergenic 35.0%
AAGGTAAAAAAGAGAAGAGG+GGG + Chr1:84949979-84949998 None:intergenic 35.0%
ATCCAGAATATGATGCCAAA+AGG - Chr1:84950843-84950862 MsG0180004957.01.T01:intron 35.0%
ATGTGAAGATAGTATCCAAC+AGG - Chr1:84951648-84951667 MsG0180004957.01.T01:intron 35.0%
ATTGAATATCACTGTACCTC+TGG + Chr1:84951102-84951121 None:intergenic 35.0%
CCTGCAGAGAATATTAATAC+AGG + Chr1:84951454-84951473 None:intergenic 35.0%
CCTGTATTAATATTCTCTGC+AGG - Chr1:84951451-84951470 MsG0180004957.01.T01:CDS 35.0%
GCCTTAGAACCTGTTAATAT+TGG + Chr1:84951604-84951623 None:intergenic 35.0%
GGAAAGGTAAAAAAGAGAAG+AGG + Chr1:84949982-84950001 None:intergenic 35.0%
GGAAATGGAGGATATCAAAT+TGG - Chr1:84950077-84950096 MsG0180004957.01.T01:intron 35.0%
GGAGAAATTAATAGGAACCT+TGG + Chr1:84953000-84953019 None:intergenic 35.0%
GTATTACCAGTGAAACCTAA+AGG + Chr1:84951821-84951840 None:intergenic 35.0%
TACGATACTCGAATTTCTGT+GGG - Chr1:84952297-84952316 MsG0180004957.01.T01:intron 35.0%
TAGGAGAAAATTCCAATGGA+TGG + Chr1:84950889-84950908 None:intergenic 35.0%
TATGTTAAGTACCAGGTGAA+GGG - Chr1:84952811-84952830 MsG0180004957.01.T01:CDS 35.0%
TCCCTTACACGTCAAAAATT+AGG - Chr1:84950758-84950777 MsG0180004957.01.T01:CDS 35.0%
TGGAAAACATTTGGAAATGG+AGG - Chr1:84950065-84950084 MsG0180004957.01.T01:intron 35.0%
TTACGATACTCGAATTTCTG+TGG - Chr1:84952296-84952315 MsG0180004957.01.T01:intron 35.0%
TTATGTTAAGTACCAGGTGA+AGG - Chr1:84952810-84952829 MsG0180004957.01.T01:CDS 35.0%
! ACTTTGATAACTTCCCACAT+GGG + Chr1:84952889-84952908 None:intergenic 35.0%
! CAATGCTGGTCTACATATAT+AGG - Chr1:84950967-84950986 MsG0180004957.01.T01:intron 35.0%
! GAAAAAACCTGAAGCTTTTG+AGG + Chr1:84950174-84950193 None:intergenic 35.0%
! GCTAAGAGTATATGGTTAAC+TGG + Chr1:84952949-84952968 None:intergenic 35.0%
! GGCCAACTTGTATCTTTTAA+AGG - Chr1:84951686-84951705 MsG0180004957.01.T01:CDS 35.0%
! TAATTGCCTTTAGGTTTCAC+TGG - Chr1:84951812-84951831 MsG0180004957.01.T01:intron 35.0%
! TTCATATAACTGCTGCCTTT+TGG + Chr1:84950861-84950880 None:intergenic 35.0%
! TTGATGTTGAAGAAGTGTAG+CGG + Chr1:84949937-84949956 None:intergenic 35.0%
! TTTGGTGTATTATTAGGTGG+GGG - Chr1:84951152-84951171 MsG0180004957.01.T01:intron 35.0%
! TTTTTGTCTTACACATCCCA+AGG - Chr1:84952980-84952999 MsG0180004957.01.T01:five_prime_UTR 35.0%
!! AAGTGGTGTTACCAGAAAAA+TGG + Chr1:84949805-84949824 None:intergenic 35.0%
!! AGTGGTGTTACCAGAAAAAT+GGG + Chr1:84949804-84949823 None:intergenic 35.0%
!! CGAGCTTTTTGAATTTTTGG+AGG - Chr1:84951270-84951289 MsG0180004957.01.T01:CDS 35.0%
!!! TCTGGTATTTTGATTGTTGC+AGG - Chr1:84952587-84952606 MsG0180004957.01.T01:intron 35.0%
AAAGGAAACTCATGGTAGAG+TGG - Chr1:84950927-84950946 MsG0180004957.01.T01:intron 40.0%
AAATCACAGCAATTGGAGTC+TGG + Chr1:84952495-84952514 None:intergenic 40.0%
ACGCATGCTCTTCTTATTGA+AGG - Chr1:84951178-84951197 MsG0180004957.01.T01:intron 40.0%
AGAACCAATGTTCTCCTTCT+TGG - Chr1:84952235-84952254 MsG0180004957.01.T01:intron 40.0%
AGGGTAGGAGAAAATTCCAA+TGG + Chr1:84950893-84950912 None:intergenic 40.0%
ATCACCAAGAAGGAGAACAT+TGG + Chr1:84952242-84952261 None:intergenic 40.0%
ATGTTAAGTACCAGGTGAAG+GGG - Chr1:84952812-84952831 MsG0180004957.01.T01:CDS 40.0%
CATGCTCTTCTTATTGAAGG+AGG - Chr1:84951181-84951200 MsG0180004957.01.T01:intron 40.0%
CATGTGGGAAGTTATCAAAG+TGG - Chr1:84952888-84952907 MsG0180004957.01.T01:five_prime_UTR 40.0%
CTTGAGCAAGTCATTGTCAT+CGG + Chr1:84952212-84952231 None:intergenic 40.0%
GAAGATAGTATCCAACAGGA+TGG - Chr1:84951652-84951671 MsG0180004957.01.T01:CDS 40.0%
GAAGATTCGATTGCTGACAT+TGG - Chr1:84951388-84951407 MsG0180004957.01.T01:intron 40.0%
GCTACACTTCTTCAACATCA+AGG - Chr1:84949936-84949955 MsG0180004957.01.T01:three_prime_UTR 40.0%
GGAAGAGAAAAGGAAACTCA+TGG - Chr1:84950919-84950938 MsG0180004957.01.T01:intron 40.0%
TAAGTGAGTTCTCAACGTTG+TGG + Chr1:84952615-84952634 None:intergenic 40.0%
TATATAGTGTGGGACTTCTC+AGG + Chr1:84950364-84950383 None:intergenic 40.0%
TCTCTCATATGTGCTCAAGT+GGG - Chr1:84952911-84952930 MsG0180004957.01.T01:five_prime_UTR 40.0%
TGGTAGAGTGGTATGTGATT+CGG - Chr1:84950939-84950958 MsG0180004957.01.T01:intron 40.0%
! AGGGGAAAAAAGTGCAGTAA+AGG + Chr1:84953055-84953074 None:intergenic 40.0%
! CACTTTGATAACTTCCCACA+TGG + Chr1:84952890-84952909 None:intergenic 40.0%
! GCTTGCTGATATCATTGAAG+AGG - Chr1:84951474-84951493 MsG0180004957.01.T01:CDS 40.0%
! GGGAAAAAAGTGCAGTAAAG+GGG + Chr1:84953053-84953072 None:intergenic 40.0%
! GGGGAAAAAAGTGCAGTAAA+GGG + Chr1:84953054-84953073 None:intergenic 40.0%
! TGATGTTGAAGAAGTGTAGC+GGG + Chr1:84949936-84949955 None:intergenic 40.0%
! TGCCTTTTGGCATCATATTC+TGG + Chr1:84950848-84950867 None:intergenic 40.0%
! TGGAATTTTCTCCTACCCTT+GGG - Chr1:84950894-84950913 MsG0180004957.01.T01:intron 40.0%
! TTGGAATTTTCTCCTACCCT+TGG - Chr1:84950893-84950912 MsG0180004957.01.T01:intron 40.0%
!! AGTTTGTTGTGGAGCAAAAC+AGG + Chr1:84950129-84950148 None:intergenic 40.0%
!! GAACGATTCGGTGATATTGA+TGG - Chr1:84952181-84952200 MsG0180004957.01.T01:intron 40.0%
!! GAATTGCAGCAAGTTTGTTG+TGG + Chr1:84950140-84950159 None:intergenic 40.0%
!! GCTAACATAGCTTTTAGGGA+AGG - Chr1:84951241-84951260 MsG0180004957.01.T01:CDS 40.0%
!! TGGTAAGTTGATTAGCTGGA+TGG - Chr1:84952668-84952687 MsG0180004957.01.T01:intron 40.0%
!!! TTTGGAGGGTTTTTTTGGGA+GGG - Chr1:84950471-84950490 MsG0180004957.01.T01:intron 40.0%
!!! TTTTGGAGGGTTTTTTTGGG+AGG - Chr1:84950470-84950489 MsG0180004957.01.T01:intron 40.0%
!!! TTTTGGGTTAATGGAACTCG+CGG - Chr1:84950694-84950713 MsG0180004957.01.T01:CDS 40.0%
AAAGTGACGTGGGAGAAAGT+TGG + Chr1:84949912-84949931 None:intergenic 45.0%
AGAGGGGGTGAAGAAGAAAA+AGG + Chr1:84949964-84949983 None:intergenic 45.0%
AGCAAGTCATTGTCATCGGT+TGG + Chr1:84952208-84952227 None:intergenic 45.0%
ATTGGGTTCAGAATTGACGC+TGG - Chr1:84950095-84950114 MsG0180004957.01.T01:intron 45.0%
CTGGATTATCCTGCTGCAAA+AGG + Chr1:84950829-84950848 None:intergenic 45.0%
GAGTGTGACTCGATTGATCT+TGG + Chr1:84950543-84950562 None:intergenic 45.0%
GCTGGATGGTAACACATCTT+TGG - Chr1:84952682-84952701 MsG0180004957.01.T01:intron 45.0%
GGCGATAACTCATTTGAGTG+TGG + Chr1:84949865-84949884 None:intergenic 45.0%
GTCTCTCATATGTGCTCAAG+TGG - Chr1:84952910-84952929 MsG0180004957.01.T01:five_prime_UTR 45.0%
! GAGTCATTTCTAGGCAGTCA+TGG - Chr1:84950803-84950822 MsG0180004957.01.T01:intron 45.0%
! TCACACATTTTGTGCACCAG+AGG - Chr1:84951083-84951102 MsG0180004957.01.T01:intron 45.0%
!! ACGTGTAAGGGAGCATTAGA+GGG + Chr1:84950750-84950769 None:intergenic 45.0%
!! GTGATTCGGTTTCTCAATGC+TGG - Chr1:84950953-84950972 MsG0180004957.01.T01:intron 45.0%
!! TTTTTCAGACTCACTCGCCA+GGG + Chr1:84951893-84951912 None:intergenic 45.0%
!!! CTTTTTTCCCCTCCTGGATA+TGG - Chr1:84953063-84953082 MsG0180004957.01.T01:five_prime_UTR 45.0%
!!! TTTTTTCAGACTCACTCGCC+AGG + Chr1:84951894-84951913 None:intergenic 45.0%
CTCCAGTGTGATCACCAAGA+AGG + Chr1:84952252-84952271 None:intergenic 50.0%
GGAGACTTGGGAATGTCTGA+TGG - Chr1:84952268-84952287 MsG0180004957.01.T01:intron 50.0%
GGTGATCACACTGGAGACTT+GGG - Chr1:84952256-84952275 MsG0180004957.01.T01:intron 50.0%
GGTTCAGAATTGACGCTGGT+GGG - Chr1:84950099-84950118 MsG0180004957.01.T01:intron 50.0%
TCACCGAATCGTTCGTGAAC+AGG + Chr1:84952175-84952194 None:intergenic 50.0%
TGGTGATCACACTGGAGACT+TGG - Chr1:84952255-84952274 MsG0180004957.01.T01:intron 50.0%
TTAAGTACCAGGTGAAGGGG+TGG - Chr1:84952815-84952834 MsG0180004957.01.T01:exon 50.0%
! ACATGCAATAAGGGGGGTGT+AGG + Chr1:84950003-84950022 None:intergenic 50.0%
! ATTTTCTCCTACCCTTGGGC+TGG - Chr1:84950898-84950917 MsG0180004957.01.T01:intron 50.0%
! CAATAAGGGGGGTGTAGGAA+AGG + Chr1:84949998-84950017 None:intergenic 50.0%
! CCTTTTCTCTTCCAGCCCAA+GGG + Chr1:84950912-84950931 None:intergenic 50.0%
! CTCCTTCTTGGTGATCACAC+TGG - Chr1:84952247-84952266 MsG0180004957.01.T01:intron 50.0%
! TCCTTTTCTCTTCCAGCCCA+AGG + Chr1:84950913-84950932 None:intergenic 50.0%
! TGTAGCGGGAAAAGTGACGT+GGG + Chr1:84949922-84949941 None:intergenic 50.0%
! TTGAGATACTAGTGGGCGTG+AGG - Chr1:84950428-84950447 MsG0180004957.01.T01:intron 50.0%
!! AGTTGGTGGTGACGATGGAT+TGG + Chr1:84949895-84949914 None:intergenic 50.0%
!! CGTGTAAGGGAGCATTAGAG+GGG + Chr1:84950749-84950768 None:intergenic 50.0%
!! CTGAAGCTTTTGAGGACCAG+CGG + Chr1:84950166-84950185 None:intergenic 50.0%
!! GACGTGTAAGGGAGCATTAG+AGG + Chr1:84950751-84950770 None:intergenic 50.0%
!! GAGAAAGTTGGTGGTGACGA+TGG + Chr1:84949900-84949919 None:intergenic 50.0%
!! TGACGATGGATTGGAGTTGG+AGG + Chr1:84949886-84949905 None:intergenic 50.0%
!! TGGTGACGATGGATTGGAGT+TGG + Chr1:84949889-84949908 None:intergenic 50.0%
!!! ACTGCACTTTTTTCCCCTCC+TGG - Chr1:84953057-84953076 MsG0180004957.01.T01:five_prime_UTR 50.0%
AATCGCCAGCCATATCCAGG+AGG + Chr1:84953075-84953094 None:intergenic 55.0%
ACACTCCAAACGTGCAGTGG+TGG - Chr1:84950557-84950576 MsG0180004957.01.T01:intron 55.0%
ACATGGGCGCATCATTCTGC+AGG + Chr1:84952873-84952892 None:intergenic 55.0%
ATCGCCAGCCATATCCAGGA+GGG + Chr1:84953074-84953093 None:intergenic 55.0%
CACTCCAAACGTGCAGTGGT+GGG - Chr1:84950558-84950577 MsG0180004957.01.T01:intron 55.0%
CATGGGCGCATCATTCTGCA+GGG + Chr1:84952872-84952891 None:intergenic 55.0%
CGCTGGTCCTCAAAAGCTTC+AGG - Chr1:84950164-84950183 MsG0180004957.01.T01:intron 55.0%
CTTGCTGCAATTCGTTCCGC+TGG - Chr1:84950147-84950166 MsG0180004957.01.T01:intron 55.0%
GCAGAATGATGCGCCCATGT+GGG - Chr1:84952873-84952892 MsG0180004957.01.T01:five_prime_UTR 55.0%
GCGCCTGTTCACGAACGATT+CGG - Chr1:84952169-84952188 MsG0180004957.01.T01:intron 55.0%
GCTAATCGCCAGCCATATCC+AGG + Chr1:84953078-84953097 None:intergenic 55.0%
GGGTTCAGAATTGACGCTGG+TGG - Chr1:84950098-84950117 MsG0180004957.01.T01:intron 55.0%
GTCACACTCCAAACGTGCAG+TGG - Chr1:84950554-84950573 MsG0180004957.01.T01:intron 55.0%
GTGACGTGGGAGAAAGTTGG+TGG + Chr1:84949909-84949928 None:intergenic 55.0%
TGCAGAATGATGCGCCCATG+TGG - Chr1:84952872-84952891 MsG0180004957.01.T01:five_prime_UTR 55.0%
TTCTCTTCCAGCCCAAGGGT+AGG + Chr1:84950908-84950927 None:intergenic 55.0%
TTTCCCCTCCTGGATATGGC+TGG - Chr1:84953067-84953086 MsG0180004957.01.T01:five_prime_UTR 55.0%
! AGATACTAGTGGGCGTGAGG+TGG - Chr1:84950431-84950450 MsG0180004957.01.T01:intron 55.0%
! CAGTCATGGCCTTTTGCAGC+AGG - Chr1:84950817-84950836 MsG0180004957.01.T01:intron 55.0%
! CCCTTGGGCTGGAAGAGAAA+AGG - Chr1:84950909-84950928 MsG0180004957.01.T01:intron 55.0%
! GTGTAGCGGGAAAAGTGACG+TGG + Chr1:84949923-84949942 None:intergenic 55.0%
ACTGCCCACCACTGCACGTT+TGG + Chr1:84950565-84950584 None:intergenic 60.0%
TCGCCAGCCATATCCAGGAG+GGG + Chr1:84953073-84953092 None:intergenic 60.0%
TACTCGGCCACCCCTTCACC+TGG + Chr1:84952825-84952844 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 84949742 84953172 84949742 ID=MsG0180004957.01;Name=MsG0180004957.01
Chr1 mRNA 84949742 84953172 84949742 ID=MsG0180004957.01.T01;Parent=MsG0180004957.01;Name=MsG0180004957.01.T01;_AED=0.49;_eAED=0.49;_QI=339|0.87|0.77|1|0.75|0.66|9|388|255
Chr1 exon 84949742 84950037 84949742 ID=MsG0180004957.01.T01:exon:28045;Parent=MsG0180004957.01.T01
Chr1 exon 84950245 84950305 84950245 ID=MsG0180004957.01.T01:exon:28044;Parent=MsG0180004957.01.T01
Chr1 exon 84950589 84950795 84950589 ID=MsG0180004957.01.T01:exon:28043;Parent=MsG0180004957.01.T01
Chr1 exon 84951207 84951300 84951207 ID=MsG0180004957.01.T01:exon:28042;Parent=MsG0180004957.01.T01
Chr1 exon 84951419 84951522 84951419 ID=MsG0180004957.01.T01:exon:28041;Parent=MsG0180004957.01.T01
Chr1 exon 84951652 84951746 84951652 ID=MsG0180004957.01.T01:exon:28040;Parent=MsG0180004957.01.T01
Chr1 exon 84951966 84952098 84951966 ID=MsG0180004957.01.T01:exon:28039;Parent=MsG0180004957.01.T01
Chr1 exon 84952193 84952253 84952193 ID=MsG0180004957.01.T01:exon:28038;Parent=MsG0180004957.01.T01
Chr1 exon 84952729 84953172 84952729 ID=MsG0180004957.01.T01:exon:28037;Parent=MsG0180004957.01.T01
Chr1 five_prime_UTR 84952834 84953172 84952834 ID=MsG0180004957.01.T01:five_prime_utr;Parent=MsG0180004957.01.T01
Chr1 CDS 84952729 84952833 84952729 ID=MsG0180004957.01.T01:cds;Parent=MsG0180004957.01.T01
Chr1 CDS 84952193 84952253 84952193 ID=MsG0180004957.01.T01:cds;Parent=MsG0180004957.01.T01
Chr1 CDS 84951966 84952098 84951966 ID=MsG0180004957.01.T01:cds;Parent=MsG0180004957.01.T01
Chr1 CDS 84951652 84951746 84951652 ID=MsG0180004957.01.T01:cds;Parent=MsG0180004957.01.T01
Chr1 CDS 84951419 84951522 84951419 ID=MsG0180004957.01.T01:cds;Parent=MsG0180004957.01.T01
Chr1 CDS 84951207 84951300 84951207 ID=MsG0180004957.01.T01:cds;Parent=MsG0180004957.01.T01
Chr1 CDS 84950620 84950795 84950620 ID=MsG0180004957.01.T01:cds;Parent=MsG0180004957.01.T01
Chr1 three_prime_UTR 84950589 84950619 84950589 ID=MsG0180004957.01.T01:three_prime_utr;Parent=MsG0180004957.01.T01
Chr1 three_prime_UTR 84950245 84950305 84950245 ID=MsG0180004957.01.T01:three_prime_utr;Parent=MsG0180004957.01.T01
Chr1 three_prime_UTR 84949742 84950037 84949742 ID=MsG0180004957.01.T01:three_prime_utr;Parent=MsG0180004957.01.T01
Gene Sequence

>MsG0180004957.01.T01

ATGGAGGATATCAAATTGGGTTCAGAATTGACGCTGGTGGGTGATCCTGTTTTGCTCCACAACAAACTTGCTGCAATTCGTTCCGCTGGTCCTCAAAAGCTTCAGGTGATCGCTGATTTTGATGCCACATTAACAAAGTTTTGGGTTAATGGAACTCGCGGCCAAAGCAGTCATGGCCTTTTGCAGCAGGATAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAACATTACCATCCATTGGAATTTTCTCCTACCCTTGGGCTGGAAGAGAAAAGGAAACTCATGGTAGAGTGGTGGGGGAAAACGCATGCTCTTCTTATTGAAGGAGGACTTACATATGAATCAATAAAACAATCAGTTGCTAATGCTAACATAGCTTTTAGGGAAGATTCGATTGCTGACATTGGATACCATTTTCCATTTTGTTATTTTTCAGGAAGAGACATTCCTGTATTAATATTCTCTGCAGGGCTTGCTGATATCATTGAAGAGGTTCTAAGGCAGAAGCTTCGCAGATCCTTCAAAAATGTGAAGATAGTATCCAACAGGATGGTATTTAACAATGGCCAACTTGTATCTTTTAAAGGAAAATTGATTCACAGCTTAAATAAAAATGAGCATGCTCTTGATATGGCTGCGCCTGTTCACGAACGATTCGGTGATATTGATGGTCCAACCGATGACAATGACTTGCTCAAGAAGAGAACCAATGTTCTCCTTCTTGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTAA

Protein sequence

>MsG0180004957.01.T01

MEDIKLGSELTLVGDPVLLHNKLAAIRSAGPQKLQVIADFDATLTKFWVNGTRGQSSHGLLQQDNPEYDAKRQQLYEHYHPLEFSPTLGLEEKRKLMVEWWGKTHALLIEGGLTYESIKQSVANANIAFREDSIADIGYHFPFCYFSGRDIPVLIFSAGLADIIEEVLRQKLRRSFKNVKIVSNRMVFNNGQLVSFKGKLIHSLNKNEHALDMAAPVHERFGDIDGPTDDNDLLKKRTNVLLLGDHTGDLGMSDG*