Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027191.01.T01 | XP_013443163.1 | 98.469 | 588 | 9 | 0 | 1 | 588 | 1 | 588 | 0 | 1209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027191.01.T01 | O82333 | 82.403 | 591 | 99 | 3 | 1 | 588 | 1 | 589 | 0 | 1015 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027191.01.T01 | A0A072TJY1 | 98.469 | 588 | 9 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580027033.01 | MsG0580027191.01 | 0.892102 | 2.162612e-74 | 1.948063e-70 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580027191.01 | MsG0880043524.01 | PPI |
| MsG0880043046.01 | MsG0580027191.01 | PPI |
| MsG0880044688.01 | MsG0580027191.01 | PPI |
| MsG0780041738.01 | MsG0580027191.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027191.01.T01 | MTR_0035s0150 | 98.469 | 588 | 9 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1209 |
| MsG0580027191.01.T01 | MTR_5g016320 | 77.409 | 602 | 120 | 4 | 1 | 588 | 1 | 600 | 0.0 | 958 |
| MsG0580027191.01.T01 | MTR_8g467000 | 64.141 | 594 | 195 | 2 | 9 | 584 | 4 | 597 | 0.0 | 810 |
| MsG0580027191.01.T01 | MTR_4g045903 | 62.779 | 583 | 197 | 5 | 17 | 584 | 27 | 604 | 0.0 | 763 |
| MsG0580027191.01.T01 | MTR_2g081860 | 61.395 | 588 | 206 | 3 | 18 | 584 | 12 | 599 | 0.0 | 761 |
| MsG0580027191.01.T01 | MTR_1g088765 | 52.951 | 593 | 248 | 7 | 18 | 584 | 9 | 596 | 0.0 | 623 |
| MsG0580027191.01.T01 | MTR_1g088765 | 53.319 | 452 | 192 | 5 | 152 | 584 | 1 | 452 | 3.45e-167 | 483 |
| MsG0580027191.01.T01 | MTR_7g117110 | 39.367 | 569 | 327 | 8 | 21 | 576 | 12 | 575 | 2.31e-137 | 412 |
| MsG0580027191.01.T01 | MTR_8g027970 | 38.761 | 565 | 332 | 7 | 21 | 576 | 12 | 571 | 3.10e-136 | 409 |
| MsG0580027191.01.T01 | MTR_8g027920 | 37.925 | 559 | 333 | 8 | 27 | 576 | 18 | 571 | 2.19e-135 | 407 |
| MsG0580027191.01.T01 | MTR_8g027965 | 37.943 | 564 | 338 | 6 | 21 | 576 | 12 | 571 | 4.27e-135 | 406 |
| MsG0580027191.01.T01 | MTR_8g027955 | 37.876 | 565 | 337 | 8 | 21 | 576 | 19 | 578 | 2.91e-134 | 404 |
| MsG0580027191.01.T01 | MTR_0102s0060 | 33.158 | 570 | 357 | 4 | 23 | 571 | 22 | 588 | 8.12e-121 | 370 |
| MsG0580027191.01.T01 | MTR_7g094190 | 31.414 | 573 | 362 | 12 | 19 | 567 | 4 | 569 | 3.35e-86 | 279 |
| MsG0580027191.01.T01 | MTR_7g117110 | 37.179 | 390 | 234 | 4 | 21 | 400 | 12 | 400 | 1.34e-81 | 262 |
| MsG0580027191.01.T01 | MTR_7g094190 | 31.910 | 445 | 278 | 9 | 141 | 567 | 32 | 469 | 2.48e-68 | 229 |
| MsG0580027191.01.T01 | MTR_8g037720 | 36.335 | 322 | 166 | 7 | 268 | 576 | 136 | 431 | 1.55e-62 | 213 |
| MsG0580027191.01.T01 | MTR_8g037720 | 41.414 | 99 | 55 | 1 | 24 | 119 | 3 | 101 | 2.63e-16 | 82.0 |
| MsG0580027191.01.T01 | MTR_1g047730 | 42.205 | 263 | 125 | 6 | 326 | 576 | 111 | 358 | 5.47e-62 | 209 |
| MsG0580027191.01.T01 | MTR_7g094330 | 30.576 | 278 | 150 | 7 | 141 | 408 | 32 | 276 | 2.61e-32 | 126 |
| MsG0580027191.01.T01 | MTR_3g023280 | 51.376 | 109 | 50 | 1 | 479 | 584 | 19 | 127 | 1.22e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027191.01.T01 | AT2G14960 | 82.403 | 591 | 99 | 3 | 1 | 588 | 1 | 589 | 0.0 | 1015 |
| MsG0580027191.01.T01 | AT4G37390 | 76.783 | 603 | 125 | 4 | 1 | 588 | 1 | 603 | 0.0 | 954 |
| MsG0580027191.01.T01 | AT2G23170 | 77.983 | 595 | 124 | 4 | 1 | 588 | 1 | 595 | 0.0 | 953 |
| MsG0580027191.01.T01 | AT1G59500 | 72.864 | 597 | 149 | 5 | 1 | 586 | 1 | 595 | 0.0 | 900 |
| MsG0580027191.01.T01 | AT5G54510 | 66.724 | 586 | 177 | 3 | 17 | 584 | 19 | 604 | 0.0 | 822 |
| MsG0580027191.01.T01 | AT4G27260 | 65.983 | 585 | 181 | 3 | 18 | 584 | 20 | 604 | 0.0 | 811 |
| MsG0580027191.01.T01 | AT1G28130 | 56.155 | 593 | 229 | 8 | 22 | 584 | 13 | 604 | 0.0 | 686 |
| MsG0580027191.01.T01 | AT2G47750 | 50.940 | 585 | 264 | 8 | 17 | 584 | 7 | 585 | 0.0 | 597 |
| MsG0580027191.01.T01 | AT1G23160 | 50.000 | 570 | 274 | 5 | 17 | 576 | 9 | 577 | 0.0 | 590 |
| MsG0580027191.01.T01 | AT5G13320 | 46.988 | 581 | 297 | 4 | 6 | 576 | 10 | 589 | 0.0 | 571 |
| MsG0580027191.01.T01 | AT5G13320 | 47.295 | 573 | 291 | 4 | 14 | 576 | 3 | 574 | 0.0 | 569 |
| MsG0580027191.01.T01 | AT5G13320 | 47.295 | 573 | 291 | 4 | 14 | 576 | 3 | 574 | 0.0 | 569 |
| MsG0580027191.01.T01 | AT5G13370 | 48.090 | 576 | 282 | 7 | 22 | 582 | 13 | 586 | 0.0 | 557 |
| MsG0580027191.01.T01 | AT5G13360 | 48.547 | 585 | 272 | 9 | 19 | 582 | 87 | 663 | 0.0 | 543 |
| MsG0580027191.01.T01 | AT5G13360 | 48.547 | 585 | 272 | 9 | 19 | 582 | 9 | 585 | 0.0 | 542 |
| MsG0580027191.01.T01 | AT5G13360 | 48.547 | 585 | 272 | 9 | 19 | 582 | 9 | 585 | 0.0 | 542 |
| MsG0580027191.01.T01 | AT5G13380 | 46.864 | 574 | 289 | 5 | 23 | 582 | 44 | 615 | 0.0 | 538 |
| MsG0580027191.01.T01 | AT1G28130 | 56.182 | 461 | 174 | 6 | 152 | 584 | 1 | 461 | 0.0 | 531 |
| MsG0580027191.01.T01 | AT5G13350 | 46.552 | 580 | 292 | 8 | 19 | 582 | 9 | 586 | 0.0 | 528 |
| MsG0580027191.01.T01 | AT5G13350 | 46.552 | 580 | 292 | 8 | 19 | 582 | 9 | 586 | 0.0 | 528 |
| MsG0580027191.01.T01 | AT1G48660 | 45.053 | 566 | 300 | 6 | 23 | 580 | 7 | 569 | 5.43e-180 | 521 |
| MsG0580027191.01.T01 | AT1G48660 | 44.621 | 567 | 304 | 5 | 23 | 580 | 7 | 572 | 6.01e-180 | 521 |
| MsG0580027191.01.T01 | AT5G51470 | 44.803 | 558 | 301 | 4 | 26 | 577 | 16 | 572 | 1.35e-172 | 502 |
| MsG0580027191.01.T01 | AT1G48670 | 41.918 | 563 | 267 | 6 | 26 | 580 | 11 | 521 | 7.61e-153 | 449 |
| MsG0580027191.01.T01 | AT5G51470 | 44.050 | 479 | 262 | 3 | 104 | 576 | 3 | 481 | 6.32e-142 | 421 |
| MsG0580027191.01.T01 | AT2G46370 | 39.254 | 563 | 323 | 9 | 26 | 576 | 17 | 572 | 8.31e-139 | 416 |
| MsG0580027191.01.T01 | AT2G46370 | 39.254 | 563 | 323 | 9 | 26 | 576 | 17 | 572 | 8.31e-139 | 416 |
| MsG0580027191.01.T01 | AT2G46370 | 39.254 | 563 | 323 | 9 | 26 | 576 | 28 | 583 | 8.53e-139 | 416 |
| MsG0580027191.01.T01 | AT1G48670 | 47.677 | 409 | 207 | 3 | 179 | 580 | 2 | 410 | 1.18e-137 | 407 |
| MsG0580027191.01.T01 | AT4G03400 | 34.669 | 574 | 343 | 6 | 25 | 571 | 14 | 582 | 3.93e-123 | 375 |
| MsG0580027191.01.T01 | AT4G03400 | 34.669 | 574 | 343 | 6 | 25 | 571 | 14 | 582 | 3.93e-123 | 375 |
| MsG0580027191.01.T01 | AT2G46370 | 38.600 | 500 | 290 | 7 | 87 | 576 | 1 | 493 | 1.18e-121 | 369 |
| MsG0580027191.01.T01 | AT1G48690 | 40.415 | 193 | 107 | 3 | 22 | 210 | 2 | 190 | 8.25e-41 | 147 |
Find 161 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTAAGTTTGAAGCGTTTA+AGG | 0.105133 | 5:+55895509 | None:intergenic |
| TTAAATCACCTTATCCTTTC+AGG | 0.112309 | 5:+55893033 | None:intergenic |
| AATCGTTGAATTCTGTTTAT+AGG | 0.179457 | 5:-55893269 | MsG0580027191.01.T01:CDS |
| TACAATGACATCTAAATATT+TGG | 0.200273 | 5:+55893872 | None:intergenic |
| AAGAATGCTCAAATGAAAAT+TGG | 0.234619 | 5:-55893926 | MsG0580027191.01.T01:CDS |
| ACCACAAATGATGCCAATTT+CGG | 0.250238 | 5:+55893951 | None:intergenic |
| TACTCCTATAATGGAGCTTT+TGG | 0.260700 | 5:-55893106 | MsG0580027191.01.T01:CDS |
| TATCAAACCCGACCCGAAAT+TGG | 0.272388 | 5:-55893964 | MsG0580027191.01.T01:CDS |
| AAGGACACCAGGTGGTTTAT+TGG | 0.276363 | 5:-55894300 | MsG0580027191.01.T01:CDS |
| AAAACTGATGCCAACAATTA+AGG | 0.280114 | 5:-55895067 | MsG0580027191.01.T01:CDS |
| CCACAAATGATGCCAATTTC+GGG | 0.283143 | 5:+55893952 | None:intergenic |
| GAGTCCAAAAGCTCCATTAT+AGG | 0.283190 | 5:+55893102 | None:intergenic |
| GAATTCCTACCTCACGAATC+AGG | 0.303669 | 5:-55893681 | MsG0580027191.01.T01:CDS |
| CATTCTTTCGACGCACAAAA+TGG | 0.304672 | 5:+55893517 | None:intergenic |
| TATTTAGATGTCATTGTAAC+TGG | 0.310356 | 5:-55893867 | MsG0580027191.01.T01:CDS |
| ACATCTAAATATTTGGTGTT+AGG | 0.335608 | 5:+55893879 | None:intergenic |
| CAGGTCATTATGTGATATAT+TGG | 0.340991 | 5:-55893359 | MsG0580027191.01.T01:CDS |
| TTGTAGTAACTTGTGAGAAC+TGG | 0.342828 | 5:+55894272 | None:intergenic |
| TTAGGTTCCTTCAGCTCAAT+TGG | 0.345131 | 5:-55894070 | MsG0580027191.01.T01:CDS |
| CTTAAACGCTTCAAACTTAA+CGG | 0.349894 | 5:-55895508 | MsG0580027191.01.T01:CDS |
| ATGGGATGAGCAGATAGAAT+TGG | 0.352482 | 5:+55895388 | None:intergenic |
| CCCGAAATTGGCATCATTTG+TGG | 0.352865 | 5:-55893952 | MsG0580027191.01.T01:CDS |
| GCATTTGAGTATACATGCTT+TGG | 0.355525 | 5:+55894165 | None:intergenic |
| CAGCGCCGAGGCGGAGGACT+TGG | 0.357333 | 5:+55894120 | None:intergenic |
| CTGGTCTCCTCCGTGCAATT+AGG | 0.358714 | 5:-55894088 | MsG0580027191.01.T01:CDS |
| TCCAACTCTTCCTTAATTGT+TGG | 0.367620 | 5:+55895057 | None:intergenic |
| TCAACAATTTCGTCACCATT+AGG | 0.369734 | 5:-55895655 | MsG0580027191.01.T01:CDS |
| TTGAATGTCGTGGGCTAGTT+CGG | 0.379478 | 5:+55894046 | None:intergenic |
| AAGGAATAATCACAAGGATT+TGG | 0.385048 | 5:-55893902 | MsG0580027191.01.T01:CDS |
| GGGCAGAGAATGGCTTCATT+TGG | 0.385806 | 5:+55894197 | None:intergenic |
| CAATTGGACCGTTGGAGATA+AGG | 0.392852 | 5:-55893224 | MsG0580027191.01.T01:CDS |
| AATTCAAAGTAGGCCATGTT+TGG | 0.394151 | 5:+55893699 | None:intergenic |
| AATTGGACCGTTGGAGATAA+GGG | 0.400332 | 5:-55893223 | MsG0580027191.01.T01:CDS |
| GAATAGGTGTTGTTTGGAAA+TGG | 0.409700 | 5:-55893295 | MsG0580027191.01.T01:CDS |
| TGCAGTTCTGGTACTTCAGC+TGG | 0.420220 | 5:-55895096 | MsG0580027191.01.T01:intron |
| GAAACTTACAGGTTCATAAC+TGG | 0.420972 | 5:+55895003 | None:intergenic |
| GGTGTTGAATAGGTGTTGTT+TGG | 0.422522 | 5:-55893301 | MsG0580027191.01.T01:CDS |
| AGAATGCTCAAATGAAAATT+GGG | 0.430991 | 5:-55893925 | MsG0580027191.01.T01:CDS |
| ATGGTTTGCACATTGGATTA+AGG | 0.431625 | 5:+55893745 | None:intergenic |
| CTTGAATGTTTCACGGTCGA+TGG | 0.433177 | 5:+55895483 | None:intergenic |
| TAAATCACCTTATCCTTTCA+GGG | 0.435307 | 5:+55893034 | None:intergenic |
| CGAGTCATGAGGTGTTGAAT+AGG | 0.435910 | 5:-55893311 | MsG0580027191.01.T01:CDS |
| GCTTCCTCAGAATGCTACTT+TGG | 0.436923 | 5:-55893774 | MsG0580027191.01.T01:CDS |
| ATTCTGTTTATAGGCAATGT+AGG | 0.437291 | 5:-55893260 | MsG0580027191.01.T01:CDS |
| AGGGTTGCGGATCATTCAAT+TGG | 0.439629 | 5:-55893240 | MsG0580027191.01.T01:CDS |
| AATGATGCCAATTTCGGGTC+GGG | 0.444165 | 5:+55893957 | None:intergenic |
| CAAAGACAGCGCCGAGGCGG+AGG | 0.445835 | 5:+55894114 | None:intergenic |
| CTCGGCGCTGTCTTTGCCTC+TGG | 0.447709 | 5:-55894107 | MsG0580027191.01.T01:CDS |
| TACATGCTTTGGAATGAGTC+GGG | 0.450583 | 5:+55894176 | None:intergenic |
| TCACACGCAGGTGGACCTAA+TGG | 0.456335 | 5:+55895640 | None:intergenic |
| CACTCTTTCTTGAACGGCAT+CGG | 0.459349 | 5:+55895570 | None:intergenic |
| GGACTTGTGTAGACATTGTA+CGG | 0.459915 | 5:+55894218 | None:intergenic |
| TTGGCGATACGCTGAATCTC+TGG | 0.464115 | 5:+55895424 | None:intergenic |
| AGGTCATTATGTGATATATT+GGG | 0.464196 | 5:-55893358 | MsG0580027191.01.T01:CDS |
| GGGTCCAATGTGGCAAATCT+TGG | 0.475897 | 5:+55893055 | None:intergenic |
| TTCCAACCTCCACCTCAGTA+AGG | 0.479383 | 5:+55893640 | None:intergenic |
| ATTGTACGGGTCAAAGGGTC+GGG | 0.481788 | 5:+55894232 | None:intergenic |
| GGTGACATTCTCCGTGTCAC+CGG | 0.482004 | 5:-55893564 | MsG0580027191.01.T01:CDS |
| GAATGAGTCGGGGCAGAGAA+TGG | 0.483203 | 5:+55894187 | None:intergenic |
| GTGACATTCTCCGTGTCACC+GGG | 0.486229 | 5:-55893563 | MsG0580027191.01.T01:CDS |
| TAGGTTCCTTCAGCTCAATT+GGG | 0.487597 | 5:-55894069 | MsG0580027191.01.T01:CDS |
| CTATTCAACACCTCATGACT+CGG | 0.489683 | 5:+55893312 | None:intergenic |
| ACCTCAGATGGTTTGCACAT+TGG | 0.491763 | 5:+55893738 | None:intergenic |
| GCCAACAATTAAGGAAGAGT+TGG | 0.492449 | 5:-55895058 | MsG0580027191.01.T01:CDS |
| CACTTAATTACTACAGTGGT+GGG | 0.494137 | 5:-55893821 | MsG0580027191.01.T01:CDS |
| TTCTGTTTATAGGCAATGTA+GGG | 0.495131 | 5:-55893259 | MsG0580027191.01.T01:CDS |
| TTCGATGAATCGAAGTGCCT+TGG | 0.498023 | 5:+55895609 | None:intergenic |
| AGGTCCCGGTTTGAATGTCG+TGG | 0.500373 | 5:+55894036 | None:intergenic |
| GTAGACATTGTACGGGTCAA+AGG | 0.501669 | 5:+55894226 | None:intergenic |
| TCTTTGTCTTGAATGTTTCA+CGG | 0.504579 | 5:+55895476 | None:intergenic |
| CTAGCCCACGACATTCAAAC+CGG | 0.513627 | 5:-55894041 | MsG0580027191.01.T01:CDS |
| AGGCAAAGACAGCGCCGAGG+CGG | 0.517086 | 5:+55894111 | None:intergenic |
| AACTCTGTAACGGTTCAATC+CGG | 0.517270 | 5:+55893587 | None:intergenic |
| ATTGGACCCCTGAAAGGATA+AGG | 0.517985 | 5:-55893041 | MsG0580027191.01.T01:CDS |
| CCAGGCTTGGACAAAGGAAA+AGG | 0.518296 | 5:-55894353 | MsG0580027191.01.T01:CDS |
| CCTTGTTAGGAATTCAGAGA+TGG | 0.518359 | 5:+55895369 | None:intergenic |
| TGTCATTGTAACTGGTGCTA+TGG | 0.521896 | 5:-55893859 | MsG0580027191.01.T01:CDS |
| TGTTGGCCTTACTGAGGTGG+AGG | 0.527008 | 5:-55893646 | MsG0580027191.01.T01:CDS |
| GCAGACACGGAGACCATACC+AGG | 0.528391 | 5:-55893378 | MsG0580027191.01.T01:CDS |
| GAACAGTTATGTACCAGGCT+TGG | 0.528851 | 5:-55894366 | MsG0580027191.01.T01:intron |
| TATCACATAATGACCTGGTA+TGG | 0.530639 | 5:+55893365 | None:intergenic |
| AGCTAACACTCTTTCTTGAA+CGG | 0.533051 | 5:+55895564 | None:intergenic |
| TGTAGTAACTTGTGAGAACT+GGG | 0.533261 | 5:+55894273 | None:intergenic |
| AATTCCTACCTCACGAATCA+GGG | 0.533465 | 5:-55893680 | MsG0580027191.01.T01:CDS |
| GGAGTAAAATTAACACACCT+TGG | 0.535014 | 5:+55893123 | None:intergenic |
| CGCAACCAAGTCCTCCGCCT+CGG | 0.536258 | 5:-55894125 | MsG0580027191.01.T01:CDS |
| GGATTGAACCGTTACAGAGT+TGG | 0.542624 | 5:-55893585 | MsG0580027191.01.T01:CDS |
| GACTTGTGTAGACATTGTAC+GGG | 0.543894 | 5:+55894219 | None:intergenic |
| GGATCATTCAATTGGACCGT+TGG | 0.544797 | 5:-55893232 | MsG0580027191.01.T01:CDS |
| GAGATAAGGGTTGTGAAGAG+TGG | 0.549451 | 5:-55893210 | MsG0580027191.01.T01:CDS |
| TCCAATGTGCAAACCATCTG+AGG | 0.551056 | 5:-55893739 | MsG0580027191.01.T01:CDS |
| TAGACATTGTACGGGTCAAA+GGG | 0.552212 | 5:+55894227 | None:intergenic |
| GAATGGAACAGTTATGTACC+AGG | 0.552354 | 5:-55894371 | MsG0580027191.01.T01:intron |
| TGAGAAGGCTGTATAGAAGC+TGG | 0.552464 | 5:+55895028 | None:intergenic |
| AACTGTTGGCCTTACTGAGG+TGG | 0.556999 | 5:-55893649 | MsG0580027191.01.T01:CDS |
| TATTCAACACCTCATGACTC+GGG | 0.558089 | 5:+55893313 | None:intergenic |
| AATTGGAGAGCGATCACCAT+TGG | 0.559267 | 5:+55895405 | None:intergenic |
| GTAAGGCCAACAGTTCTAGT+TGG | 0.562466 | 5:+55893657 | None:intergenic |
| CTTGTTAGGAATTCAGAGAT+GGG | 0.564594 | 5:+55895370 | None:intergenic |
| CATTGTACGGGTCAAAGGGT+CGG | 0.565800 | 5:+55894231 | None:intergenic |
| TCAGGGCCAACTAGAACTGT+TGG | 0.566536 | 5:-55893663 | MsG0580027191.01.T01:CDS |
| TATGTACCAGGCTTGGACAA+AGG | 0.567681 | 5:-55894359 | MsG0580027191.01.T01:CDS |
| ACATCATCGTACGTGATGAC+AGG | 0.568242 | 5:+55895451 | None:intergenic |
| ACACTTAATTACTACAGTGG+TGG | 0.569697 | 5:-55893822 | MsG0580027191.01.T01:CDS |
| GTAGGCCATGTTTGGCATGA+TGG | 0.569951 | 5:+55893707 | None:intergenic |
| GGCCTTACTGAGGTGGAGGT+TGG | 0.571411 | 5:-55893642 | MsG0580027191.01.T01:CDS |
| ATACATGCTTTGGAATGAGT+CGG | 0.571825 | 5:+55894175 | None:intergenic |
| GTTCGGCCCAATTGAGCTGA+AGG | 0.577120 | 5:+55894063 | None:intergenic |
| GTGAGGTAGGAATTCAAAGT+AGG | 0.577752 | 5:+55893689 | None:intergenic |
| CAATATATCACATAATGACC+TGG | 0.578248 | 5:+55893360 | None:intergenic |
| TTATAGGCAATGTAGGGTTG+CGG | 0.579521 | 5:-55893253 | MsG0580027191.01.T01:CDS |
| TGCCACATTGGACCCCTGAA+AGG | 0.581160 | 5:-55893047 | MsG0580027191.01.T01:CDS |
| GAGATTCAGCGTATCGCCAA+TGG | 0.582720 | 5:-55895421 | MsG0580027191.01.T01:CDS |
| AAATGATGCCAATTTCGGGT+CGG | 0.583077 | 5:+55893956 | None:intergenic |
| TGCTCAAATGAAAATTGGGA+AGG | 0.585393 | 5:-55893921 | MsG0580027191.01.T01:CDS |
| GTAACTTGTGAGAACTGGGC+GGG | 0.588468 | 5:+55894277 | None:intergenic |
| CCACTGTAGTAATTAAGTGT+TGG | 0.589297 | 5:+55893825 | None:intergenic |
| TAAATCAATATAAAGTTCCA+AGG | 0.589347 | 5:-55893140 | MsG0580027191.01.T01:CDS |
| TTGGCCCTGATTCGTGAGGT+AGG | 0.591553 | 5:+55893676 | None:intergenic |
| TTAGCCAAGATTTGCCACAT+TGG | 0.594038 | 5:-55893059 | MsG0580027191.01.T01:CDS |
| GCGTCTTTGTCACACGCAGG+TGG | 0.596535 | 5:+55895631 | None:intergenic |
| TTGGCGTCTTTGTCACACGC+AGG | 0.597121 | 5:+55895628 | None:intergenic |
| GTAACGGTTCAATCCGGCGT+AGG | 0.597714 | 5:+55893593 | None:intergenic |
| GGTTCATAACTGGCATGAGA+AGG | 0.599092 | 5:+55895013 | None:intergenic |
| AAATCACCTTATCCTTTCAG+GGG | 0.599858 | 5:+55893035 | None:intergenic |
| CGACGCACAAAATGGAATTG+TGG | 0.600454 | 5:+55893525 | None:intergenic |
| AGTTATGAAACCCGGTGACA+CGG | 0.604464 | 5:+55893553 | None:intergenic |
| ATACACCATCATGCCAAACA+TGG | 0.605774 | 5:-55893712 | MsG0580027191.01.T01:CDS |
| GGTCCCGGTTTGAATGTCGT+GGG | 0.606229 | 5:+55894037 | None:intergenic |
| CCATCTCTGAATTCCTAACA+AGG | 0.606610 | 5:-55895369 | MsG0580027191.01.T01:intron |
| GCATACATAGTACATGAAAG+AGG | 0.609084 | 5:+55893795 | None:intergenic |
| ATGGATTATGCAATCTCAAG+AGG | 0.609927 | 5:-55893171 | MsG0580027191.01.T01:CDS |
| GGGCGGGCCAATAAACCACC+TGG | 0.611629 | 5:+55894293 | None:intergenic |
| TGTGTTGCTTAGTATTGACT+CGG | 0.611775 | 5:-55893496 | MsG0580027191.01.T01:CDS |
| TTCACAACCCTTATCTCCAA+CGG | 0.615331 | 5:+55893216 | None:intergenic |
| TGTTTGTGAAGTCAGAAACA+AGG | 0.618361 | 5:-55894319 | MsG0580027191.01.T01:CDS |
| CTAGTTGGCCCTGATTCGTG+AGG | 0.624881 | 5:+55893672 | None:intergenic |
| ATGTATACTCAAATGCTATG+TGG | 0.627170 | 5:-55894158 | MsG0580027191.01.T01:CDS |
| AAGTCAGAAACAAGGACACC+AGG | 0.629086 | 5:-55894311 | MsG0580027191.01.T01:CDS |
| AGCAGACTCCCCGAGTCATG+AGG | 0.629198 | 5:-55893322 | MsG0580027191.01.T01:CDS |
| TGCGTGTGACAAAGACGCCA+AGG | 0.632461 | 5:-55895626 | MsG0580027191.01.T01:CDS |
| ATCCTTTCAGGGGTCCAATG+TGG | 0.633793 | 5:+55893045 | None:intergenic |
| CCAACACTTAATTACTACAG+TGG | 0.642475 | 5:-55893825 | MsG0580027191.01.T01:CDS |
| AAGTCCAAAGTAGCATTCTG+AGG | 0.642603 | 5:+55893770 | None:intergenic |
| GAATGTCACCAACTCTGTAA+CGG | 0.642994 | 5:+55893577 | None:intergenic |
| GCTGAAGGAACCTAATTGCA+CGG | 0.646007 | 5:+55894078 | None:intergenic |
| CAGAGGCAAAGACAGCGCCG+AGG | 0.652151 | 5:+55894108 | None:intergenic |
| TTCTGAGTTTAACACGAGTG+TGG | 0.662200 | 5:-55893418 | MsG0580027191.01.T01:CDS |
| ACATGCTTTGGAATGAGTCG+GGG | 0.673461 | 5:+55894177 | None:intergenic |
| CTTGTGATCACAACCTACGC+CGG | 0.686723 | 5:-55893606 | MsG0580027191.01.T01:CDS |
| TAGCCCACGACATTCAAACC+GGG | 0.688554 | 5:-55894040 | MsG0580027191.01.T01:CDS |
| ATGGTGTATGAAACCTCAGA+TGG | 0.689410 | 5:+55893726 | None:intergenic |
| TAGAACTGTTGGCCTTACTG+AGG | 0.692044 | 5:-55893652 | MsG0580027191.01.T01:CDS |
| ATTGGGAAGGAATAATCACA+AGG | 0.697048 | 5:-55893908 | MsG0580027191.01.T01:CDS |
| ATTCAACACCTCATGACTCG+GGG | 0.699615 | 5:+55893314 | None:intergenic |
| TGGTGCTGAGTTATGAAACC+CGG | 0.702188 | 5:+55893545 | None:intergenic |
| AATTGCACGGAGGAGACCAG+AGG | 0.714268 | 5:+55894091 | None:intergenic |
| GTACACGAGTTATGCAGACA+CGG | 0.716614 | 5:-55893391 | MsG0580027191.01.T01:CDS |
| TCAGAAACAAGGACACCAGG+TGG | 0.735786 | 5:-55894308 | MsG0580027191.01.T01:CDS |
| AGTAACTTGTGAGAACTGGG+CGG | 0.746811 | 5:+55894276 | None:intergenic |
| GAAGGAACCTAATTGCACGG+AGG | 0.782564 | 5:+55894081 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTAATATACTAGTAA+TGG | + | Chr5:55894097-55894116 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTAAAAAAAGG+AGG | - | Chr5:55894123-55894142 | MsG0580027191.01.T01:CDS | 10.0% |
| !!! | CTCATTTTTTTTTTAAAAAA+AGG | - | Chr5:55894120-55894139 | MsG0580027191.01.T01:CDS | 10.0% |
| !!! | GAATTTTTTTTATTTATAAC+TGG | - | Chr5:55893851-55893870 | MsG0580027191.01.T01:CDS | 10.0% |
| !!! | TATTATTGTTATTTTTTTGA+CGG | - | Chr5:55893885-55893904 | MsG0580027191.01.T01:CDS | 10.0% |
| !!! | TGTACATTTTTATTTTTTTT+AGG | - | Chr5:55893982-55894001 | MsG0580027191.01.T01:CDS | 10.0% |
| !!! | TTGATGTATTTTTTTAATTA+AGG | + | Chr5:55894009-55894028 | None:intergenic | 10.0% |
| !!! | TTGTTTATACTTTAGAAATA+TGG | + | Chr5:55894227-55894246 | None:intergenic | 15.0% |
| !! | AAAACCTTCAACTATTTATT+AGG | - | Chr5:55893794-55893813 | MsG0580027191.01.T01:CDS | 20.0% |
| !! | GGAAATTATTGTAACAAAAA+CGG | - | Chr5:55893906-55893925 | MsG0580027191.01.T01:CDS | 20.0% |
| !! | TAAATCAATATAAAGTTCCA+AGG | - | Chr5:55895565-55895584 | MsG0580027191.01.T01:CDS | 20.0% |
| !! | TACAATGACATCTAAATATT+TGG | + | Chr5:55894836-55894855 | None:intergenic | 20.0% |
| !! | TTATAGAGATAAAATAACGT+CGG | + | Chr5:55894158-55894177 | None:intergenic | 20.0% |
| !! | TTATCCTAATAAATAGTTGA+AGG | + | Chr5:55893801-55893820 | None:intergenic | 20.0% |
| !!! | AAAAGGGTTATTATTTTGAA+TGG | - | Chr5:55894317-55894336 | MsG0580027191.01.T01:CDS | 20.0% |
| !!! | CGTTATTTTATCTCTATAAA+AGG | - | Chr5:55894159-55894178 | MsG0580027191.01.T01:CDS | 20.0% |
| !!! | TCATGTGATCTTTTATATTT+TGG | + | Chr5:55894714-55894733 | None:intergenic | 20.0% |
| !!! | TGTTAATTTTACTCCTATAA+TGG | - | Chr5:55895590-55895609 | MsG0580027191.01.T01:CDS | 20.0% |
| !!! | TTTTTCTTTTTCTTTTTTCG+TGG | - | Chr5:55893367-55893386 | MsG0580027191.01.T01:CDS | 20.0% |
| ! | AAAAAATTGAGTACCTTGTT+AGG | + | Chr5:55893352-55893371 | None:intergenic | 25.0% |
| ! | AAGAATGCTCAAATGAAAAT+TGG | - | Chr5:55894779-55894798 | MsG0580027191.01.T01:intron | 25.0% |
| ! | AATCGTTGAATTCTGTTTAT+AGG | - | Chr5:55895436-55895455 | MsG0580027191.01.T01:CDS | 25.0% |
| ! | AGAATGCTCAAATGAAAATT+GGG | - | Chr5:55894780-55894799 | MsG0580027191.01.T01:intron | 25.0% |
| ! | AGGTCATTATGTGATATATT+GGG | - | Chr5:55895347-55895366 | MsG0580027191.01.T01:intron | 25.0% |
| ! | TATAGAGATAAAATAACGTC+GGG | + | Chr5:55894157-55894176 | None:intergenic | 25.0% |
| ! | TATTTAGATGTCATTGTAAC+TGG | - | Chr5:55894838-55894857 | MsG0580027191.01.T01:intron | 25.0% |
| ! | TGAGAAACTCAATTATTTGA+AGG | + | Chr5:55893730-55893749 | None:intergenic | 25.0% |
| ! | TTTAAAAAAAGGAGGATCAA+AGG | - | Chr5:55894131-55894150 | MsG0580027191.01.T01:CDS | 25.0% |
| !!! | ACATCTAAATATTTGGTGTT+AGG | + | Chr5:55894829-55894848 | None:intergenic | 25.0% |
| !!! | ATATTTTGGTCAGTGATTTT+AGG | + | Chr5:55894700-55894719 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTTAGTCGTTAAT+TGG | - | Chr5:55893474-55893493 | MsG0580027191.01.T01:CDS | 25.0% |
| AAAACTGATGCCAACAATTA+AGG | - | Chr5:55893638-55893657 | MsG0580027191.01.T01:CDS | 30.0% | |
| AAACGCATTAATTAAGCACA+TGG | + | Chr5:55893759-55893778 | None:intergenic | 30.0% | |
| AAGGAATAATCACAAGGATT+TGG | - | Chr5:55894803-55894822 | MsG0580027191.01.T01:intron | 30.0% | |
| ATGTATACTCAAATGCTATG+TGG | - | Chr5:55894547-55894566 | MsG0580027191.01.T01:intron | 30.0% | |
| ATTCTGTTTATAGGCAATGT+AGG | - | Chr5:55895445-55895464 | MsG0580027191.01.T01:CDS | 30.0% | |
| ATTTGAAGGATGAAACTTAC+AGG | + | Chr5:55893716-55893735 | None:intergenic | 30.0% | |
| ATTTGTGCTAAGTGCTAAAA+AGG | - | Chr5:55894300-55894319 | MsG0580027191.01.T01:CDS | 30.0% | |
| CAATATATCACATAATGACC+TGG | + | Chr5:55895348-55895367 | None:intergenic | 30.0% | |
| CAGGTCATTATGTGATATAT+TGG | - | Chr5:55895346-55895365 | MsG0580027191.01.T01:intron | 30.0% | |
| CTTAAACGCTTCAAACTTAA+CGG | - | Chr5:55893197-55893216 | MsG0580027191.01.T01:CDS | 30.0% | |
| TCTTTGTCTTGAATGTTTCA+CGG | + | Chr5:55893232-55893251 | None:intergenic | 30.0% | |
| TTCTGTTTATAGGCAATGTA+GGG | - | Chr5:55895446-55895465 | MsG0580027191.01.T01:CDS | 30.0% | |
| TTTGTGCTAAGTGCTAAAAA+GGG | - | Chr5:55894301-55894320 | MsG0580027191.01.T01:CDS | 30.0% | |
| !! | TTCTTTTTCTTTTTTCGTGG+TGG | - | Chr5:55893370-55893389 | MsG0580027191.01.T01:CDS | 30.0% |
| !!! | GTCAGTGATTTTAGGATTTA+AGG | + | Chr5:55894692-55894711 | None:intergenic | 30.0% |
| AACTCTTGAATTTGCAGTTC+TGG | - | Chr5:55893597-55893616 | MsG0580027191.01.T01:CDS | 35.0% | |
| AATTCAAAGTAGGCCATGTT+TGG | + | Chr5:55895009-55895028 | None:intergenic | 35.0% | |
| ACACTTAATTACTACAGTGG+TGG | - | Chr5:55894883-55894902 | MsG0580027191.01.T01:intron | 35.0% | |
| ACCACAAATGATGCCAATTT+CGG | + | Chr5:55894757-55894776 | None:intergenic | 35.0% | |
| AGCTAACACTCTTTCTTGAA+CGG | + | Chr5:55893144-55893163 | None:intergenic | 35.0% | |
| ATTGGGAAGGAATAATCACA+AGG | - | Chr5:55894797-55894816 | MsG0580027191.01.T01:intron | 35.0% | |
| CACTTAATTACTACAGTGGT+GGG | - | Chr5:55894884-55894903 | MsG0580027191.01.T01:intron | 35.0% | |
| CCAACACTTAATTACTACAG+TGG | - | Chr5:55894880-55894899 | MsG0580027191.01.T01:intron | 35.0% | |
| CCACTGTAGTAATTAAGTGT+TGG | + | Chr5:55894883-55894902 | None:intergenic | 35.0% | |
| CTTGTTAGGAATTCAGAGAT+GGG | + | Chr5:55893338-55893357 | None:intergenic | 35.0% | |
| GAAACTTACAGGTTCATAAC+TGG | + | Chr5:55893705-55893724 | None:intergenic | 35.0% | |
| GCATACATAGTACATGAAAG+AGG | + | Chr5:55894913-55894932 | None:intergenic | 35.0% | |
| GCATTTGAGTATACATGCTT+TGG | + | Chr5:55894543-55894562 | None:intergenic | 35.0% | |
| GCGTAATATATGAAAGCTCT+GGG | + | Chr5:55893407-55893426 | None:intergenic | 35.0% | |
| GGAGTAAAATTAACACACCT+TGG | + | Chr5:55895585-55895604 | None:intergenic | 35.0% | |
| TATCACATAATGACCTGGTA+TGG | + | Chr5:55895343-55895362 | None:intergenic | 35.0% | |
| TCAACAATTTCGTCACCATT+AGG | - | Chr5:55893050-55893069 | MsG0580027191.01.T01:CDS | 35.0% | |
| TCCAACTCTTCCTTAATTGT+TGG | + | Chr5:55893651-55893670 | None:intergenic | 35.0% | |
| TGCGTAATATATGAAAGCTC+TGG | + | Chr5:55893408-55893427 | None:intergenic | 35.0% | |
| TGCTCAAATGAAAATTGGGA+AGG | - | Chr5:55894784-55894803 | MsG0580027191.01.T01:intron | 35.0% | |
| TGTTTGTGAAGTCAGAAACA+AGG | - | Chr5:55894386-55894405 | MsG0580027191.01.T01:intron | 35.0% | |
| ! | ATGGATTATGCAATCTCAAG+AGG | - | Chr5:55895534-55895553 | MsG0580027191.01.T01:CDS | 35.0% |
| ! | ATGGTTTGCACATTGGATTA+AGG | + | Chr5:55894963-55894982 | None:intergenic | 35.0% |
| ! | CGTTAAGTTTGAAGCGTTTA+AGG | + | Chr5:55893199-55893218 | None:intergenic | 35.0% |
| ! | TGTAGTAACTTGTGAGAACT+GGG | + | Chr5:55894435-55894454 | None:intergenic | 35.0% |
| ! | TTGTAGTAACTTGTGAGAAC+TGG | + | Chr5:55894436-55894455 | None:intergenic | 35.0% |
| !! | ATACATGCTTTGGAATGAGT+CGG | + | Chr5:55894533-55894552 | None:intergenic | 35.0% |
| !! | GAATAGGTGTTGTTTGGAAA+TGG | - | Chr5:55895410-55895429 | MsG0580027191.01.T01:CDS | 35.0% |
| !! | TACTCCTATAATGGAGCTTT+TGG | - | Chr5:55895599-55895618 | MsG0580027191.01.T01:CDS | 35.0% |
| !! | TGTGTTGCTTAGTATTGACT+CGG | - | Chr5:55895209-55895228 | MsG0580027191.01.T01:intron | 35.0% |
| !! | TTTTCTTTTTTCGTGGTGGT+CGG | - | Chr5:55893374-55893393 | MsG0580027191.01.T01:CDS | 35.0% |
| !!! | GATTTTAGGATTTAAGGTCC+CGG | + | Chr5:55894686-55894705 | None:intergenic | 35.0% |
| AACTCTGTAACGGTTCAATC+CGG | + | Chr5:55895121-55895140 | None:intergenic | 40.0% | |
| AAGTCCAAAGTAGCATTCTG+AGG | + | Chr5:55894938-55894957 | None:intergenic | 40.0% | |
| AATTCCTACCTCACGAATCA+GGG | - | Chr5:55895025-55895044 | MsG0580027191.01.T01:CDS | 40.0% | |
| AATTGGACCGTTGGAGATAA+GGG | - | Chr5:55895482-55895501 | MsG0580027191.01.T01:CDS | 40.0% | |
| ATACACCATCATGCCAAACA+TGG | - | Chr5:55894993-55895012 | MsG0580027191.01.T01:intron | 40.0% | |
| ATGGGATGAGCAGATAGAAT+TGG | + | Chr5:55893320-55893339 | None:intergenic | 40.0% | |
| ATGGTGTATGAAACCTCAGA+TGG | + | Chr5:55894982-55895001 | None:intergenic | 40.0% | |
| CATTCTTTCGACGCACAAAA+TGG | + | Chr5:55895191-55895210 | None:intergenic | 40.0% | |
| CCACAAATGATGCCAATTTC+GGG | + | Chr5:55894756-55894775 | None:intergenic | 40.0% | |
| CCATCTCTGAATTCCTAACA+AGG | - | Chr5:55893336-55893355 | MsG0580027191.01.T01:CDS | 40.0% | |
| CCTTGTTAGGAATTCAGAGA+TGG | + | Chr5:55893339-55893358 | None:intergenic | 40.0% | |
| CTATTCAACACCTCATGACT+CGG | + | Chr5:55895396-55895415 | None:intergenic | 40.0% | |
| GAATGGAACAGTTATGTACC+AGG | - | Chr5:55894334-55894353 | MsG0580027191.01.T01:CDS | 40.0% | |
| GAATGTCACCAACTCTGTAA+CGG | + | Chr5:55895131-55895150 | None:intergenic | 40.0% | |
| GACTTGTGTAGACATTGTAC+GGG | + | Chr5:55894489-55894508 | None:intergenic | 40.0% | |
| GAGTCCAAAAGCTCCATTAT+AGG | + | Chr5:55895606-55895625 | None:intergenic | 40.0% | |
| GCCAACAATTAAGGAAGAGT+TGG | - | Chr5:55893647-55893666 | MsG0580027191.01.T01:CDS | 40.0% | |
| GGACTTGTGTAGACATTGTA+CGG | + | Chr5:55894490-55894509 | None:intergenic | 40.0% | |
| GTGAGGTAGGAATTCAAAGT+AGG | + | Chr5:55895019-55895038 | None:intergenic | 40.0% | |
| TAGACATTGTACGGGTCAAA+GGG | + | Chr5:55894481-55894500 | None:intergenic | 40.0% | |
| TAGGTTCCTTCAGCTCAATT+GGG | - | Chr5:55894636-55894655 | MsG0580027191.01.T01:intron | 40.0% | |
| TATTCAACACCTCATGACTC+GGG | + | Chr5:55895395-55895414 | None:intergenic | 40.0% | |
| TTAGCCAAGATTTGCCACAT+TGG | - | Chr5:55895646-55895665 | MsG0580027191.01.T01:CDS | 40.0% | |
| TTAGGTTCCTTCAGCTCAAT+TGG | - | Chr5:55894635-55894654 | MsG0580027191.01.T01:intron | 40.0% | |
| TTATAGGCAATGTAGGGTTG+CGG | - | Chr5:55895452-55895471 | MsG0580027191.01.T01:CDS | 40.0% | |
| TTCACAACCCTTATCTCCAA+CGG | + | Chr5:55895492-55895511 | None:intergenic | 40.0% | |
| TTCTGAGTTTAACACGAGTG+TGG | - | Chr5:55895287-55895306 | MsG0580027191.01.T01:intron | 40.0% | |
| ! | AAATGATGCCAATTTCGGGT+CGG | + | Chr5:55894752-55894771 | None:intergenic | 40.0% |
| ! | AATGGAGCTTTTGGACTCTA+GGG | - | Chr5:55895608-55895627 | MsG0580027191.01.T01:CDS | 40.0% |
| ! | TAATGGAGCTTTTGGACTCT+AGG | - | Chr5:55895607-55895626 | MsG0580027191.01.T01:CDS | 40.0% |
| ! | TGTCATTGTAACTGGTGCTA+TGG | - | Chr5:55894846-55894865 | MsG0580027191.01.T01:intron | 40.0% |
| ! | TGTGAAGAGTGGAACTTTTG+AGG | - | Chr5:55895506-55895525 | MsG0580027191.01.T01:CDS | 40.0% |
| !! | GGTGTTGAATAGGTGTTGTT+TGG | - | Chr5:55895404-55895423 | MsG0580027191.01.T01:CDS | 40.0% |
| !! | TACATGCTTTGGAATGAGTC+GGG | + | Chr5:55894532-55894551 | None:intergenic | 40.0% |
| !! | TGGAACTTTTGAGGAGCTTA+TGG | - | Chr5:55895515-55895534 | MsG0580027191.01.T01:CDS | 40.0% |
| !!! | TTTCTTTTTTCGTGGTGGTC+GGG | - | Chr5:55893375-55893394 | MsG0580027191.01.T01:CDS | 40.0% |
| AAGGACACCAGGTGGTTTAT+TGG | - | Chr5:55894405-55894424 | MsG0580027191.01.T01:intron | 45.0% | |
| AAGTCAGAAACAAGGACACC+AGG | - | Chr5:55894394-55894413 | MsG0580027191.01.T01:intron | 45.0% | |
| AATTGGAGAGCGATCACCAT+TGG | + | Chr5:55893303-55893322 | None:intergenic | 45.0% | |
| ACATCATCGTACGTGATGAC+AGG | + | Chr5:55893257-55893276 | None:intergenic | 45.0% | |
| AGGGTTGCGGATCATTCAAT+TGG | - | Chr5:55895465-55895484 | MsG0580027191.01.T01:CDS | 45.0% | |
| AGTTATGAAACCCGGTGACA+CGG | + | Chr5:55895155-55895174 | None:intergenic | 45.0% | |
| ATTCAACACCTCATGACTCG+GGG | + | Chr5:55895394-55895413 | None:intergenic | 45.0% | |
| ATTGGACCCCTGAAAGGATA+AGG | - | Chr5:55895664-55895683 | MsG0580027191.01.T01:CDS | 45.0% | |
| CAATTGGACCGTTGGAGATA+AGG | - | Chr5:55895481-55895500 | MsG0580027191.01.T01:CDS | 45.0% | |
| CACTCTTTCTTGAACGGCAT+CGG | + | Chr5:55893138-55893157 | None:intergenic | 45.0% | |
| CCCGAAATTGGCATCATTTG+TGG | - | Chr5:55894753-55894772 | MsG0580027191.01.T01:intron | 45.0% | |
| CGACGCACAAAATGGAATTG+TGG | + | Chr5:55895183-55895202 | None:intergenic | 45.0% | |
| CTTGAATGTTTCACGGTCGA+TGG | + | Chr5:55893225-55893244 | None:intergenic | 45.0% | |
| GAACAGTTATGTACCAGGCT+TGG | - | Chr5:55894339-55894358 | MsG0580027191.01.T01:CDS | 45.0% | |
| GAATTCCTACCTCACGAATC+AGG | - | Chr5:55895024-55895043 | MsG0580027191.01.T01:CDS | 45.0% | |
| GAGATAAGGGTTGTGAAGAG+TGG | - | Chr5:55895495-55895514 | MsG0580027191.01.T01:CDS | 45.0% | |
| GCTGAAGGAACCTAATTGCA+CGG | + | Chr5:55894630-55894649 | None:intergenic | 45.0% | |
| GGATCATTCAATTGGACCGT+TGG | - | Chr5:55895473-55895492 | MsG0580027191.01.T01:CDS | 45.0% | |
| GGATTGAACCGTTACAGAGT+TGG | - | Chr5:55895120-55895139 | MsG0580027191.01.T01:intron | 45.0% | |
| GGTTCATAACTGGCATGAGA+AGG | + | Chr5:55893695-55893714 | None:intergenic | 45.0% | |
| GTACACGAGTTATGCAGACA+CGG | - | Chr5:55895314-55895333 | MsG0580027191.01.T01:intron | 45.0% | |
| GTAGACATTGTACGGGTCAA+AGG | + | Chr5:55894482-55894501 | None:intergenic | 45.0% | |
| GTCAGAGCTACAAAAAGCAG+TGG | - | Chr5:55895245-55895264 | MsG0580027191.01.T01:intron | 45.0% | |
| TACGCATTGTCTCTACCAAC+TGG | - | Chr5:55893422-55893441 | MsG0580027191.01.T01:CDS | 45.0% | |
| TATCAAACCCGACCCGAAAT+TGG | - | Chr5:55894741-55894760 | MsG0580027191.01.T01:intron | 45.0% | |
| TATGTACCAGGCTTGGACAA+AGG | - | Chr5:55894346-55894365 | MsG0580027191.01.T01:CDS | 45.0% | |
| TCCAATGTGCAAACCATCTG+AGG | - | Chr5:55894966-55894985 | MsG0580027191.01.T01:intron | 45.0% | |
| TGAGAAGGCTGTATAGAAGC+TGG | + | Chr5:55893680-55893699 | None:intergenic | 45.0% | |
| ! | AATGATGCCAATTTCGGGTC+GGG | + | Chr5:55894751-55894770 | None:intergenic | 45.0% |
| ! | ACCTCAGATGGTTTGCACAT+TGG | + | Chr5:55894970-55894989 | None:intergenic | 45.0% |
| ! | AGTAACTTGTGAGAACTGGG+CGG | + | Chr5:55894432-55894451 | None:intergenic | 45.0% |
| ! | GCTTCCTCAGAATGCTACTT+TGG | - | Chr5:55894931-55894950 | MsG0580027191.01.T01:intron | 45.0% |
| ! | GTAAGGCCAACAGTTCTAGT+TGG | + | Chr5:55895051-55895070 | None:intergenic | 45.0% |
| ! | TGGTGCTGAGTTATGAAACC+CGG | + | Chr5:55895163-55895182 | None:intergenic | 45.0% |
| ! | TTCGATGAATCGAAGTGCCT+TGG | + | Chr5:55893099-55893118 | None:intergenic | 45.0% |
| !! | ACATGCTTTGGAATGAGTCG+GGG | + | Chr5:55894531-55894550 | None:intergenic | 45.0% |
| !! | CGAGTCATGAGGTGTTGAAT+AGG | - | Chr5:55895394-55895413 | MsG0580027191.01.T01:CDS | 45.0% |
| !! | TAGAACTGTTGGCCTTACTG+AGG | - | Chr5:55895053-55895072 | MsG0580027191.01.T01:CDS | 45.0% |
| !! | TTGAATGTCGTGGGCTAGTT+CGG | + | Chr5:55894662-55894681 | None:intergenic | 45.0% |
| !! | TATATATAAAAATAAAAAGT+AGG | + | Chr5:55893529-55893548 | None:intergenic | 5.0% |
| !! | TTATAAATAAAAAAAATTCT+AGG | + | Chr5:55893850-55893869 | None:intergenic | 5.0% |
| !!! | AGTAATTATTTTTTTAAATT+GGG | - | Chr5:55893574-55893593 | MsG0580027191.01.T01:CDS | 5.0% |
| !!! | TAGTAATTATTTTTTTAAAT+TGG | - | Chr5:55893573-55893592 | MsG0580027191.01.T01:CDS | 5.0% |
| !!! | TTATATATAATATTTTTAGA+TGG | - | Chr5:55893540-55893559 | MsG0580027191.01.T01:CDS | 5.0% |
| ATCCTTTCAGGGGTCCAATG+TGG | + | Chr5:55895663-55895682 | None:intergenic | 50.0% | |
| ATCGTGAGCTTAGCTCCAGT+TGG | + | Chr5:55893440-55893459 | None:intergenic | 50.0% | |
| ATTGTACGGGTCAAAGGGTC+GGG | + | Chr5:55894476-55894495 | None:intergenic | 50.0% | |
| CATTGTACGGGTCAAAGGGT+CGG | + | Chr5:55894477-55894496 | None:intergenic | 50.0% | |
| CCAGGCTTGGACAAAGGAAA+AGG | - | Chr5:55894352-55894371 | MsG0580027191.01.T01:CDS | 50.0% | |
| CTAGCCCACGACATTCAAAC+CGG | - | Chr5:55894664-55894683 | MsG0580027191.01.T01:intron | 50.0% | |
| CTTGTGATCACAACCTACGC+CGG | - | Chr5:55895099-55895118 | MsG0580027191.01.T01:intron | 50.0% | |
| GAAGGAACCTAATTGCACGG+AGG | + | Chr5:55894627-55894646 | None:intergenic | 50.0% | |
| GAGATTCAGCGTATCGCCAA+TGG | - | Chr5:55893284-55893303 | MsG0580027191.01.T01:CDS | 50.0% | |
| GGGCAGAGAATGGCTTCATT+TGG | + | Chr5:55894511-55894530 | None:intergenic | 50.0% | |
| GGGTCCAATGTGGCAAATCT+TGG | + | Chr5:55895653-55895672 | None:intergenic | 50.0% | |
| GTAGGCCATGTTTGGCATGA+TGG | + | Chr5:55895001-55895020 | None:intergenic | 50.0% | |
| TAGCCCACGACATTCAAACC+GGG | - | Chr5:55894665-55894684 | MsG0580027191.01.T01:intron | 50.0% | |
| TCAGAAACAAGGACACCAGG+TGG | - | Chr5:55894397-55894416 | MsG0580027191.01.T01:intron | 50.0% | |
| TCAGGGCCAACTAGAACTGT+TGG | - | Chr5:55895042-55895061 | MsG0580027191.01.T01:CDS | 50.0% | |
| TTCCAACCTCCACCTCAGTA+AGG | + | Chr5:55895068-55895087 | None:intergenic | 50.0% | |
| TTGGCGATACGCTGAATCTC+TGG | + | Chr5:55893284-55893303 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTTTGTCCAAGCC+TGG | + | Chr5:55894355-55894374 | None:intergenic | 50.0% |
| ! | GTAACTTGTGAGAACTGGGC+GGG | + | Chr5:55894431-55894450 | None:intergenic | 50.0% |
| ! | TGCAGTTCTGGTACTTCAGC+TGG | - | Chr5:55893609-55893628 | MsG0580027191.01.T01:CDS | 50.0% |
| !! | AACTGTTGGCCTTACTGAGG+TGG | - | Chr5:55895056-55895075 | MsG0580027191.01.T01:CDS | 50.0% |
| AATTGCACGGAGGAGACCAG+AGG | + | Chr5:55894617-55894636 | None:intergenic | 55.0% | |
| CTGGTCTCCTCCGTGCAATT+AGG | - | Chr5:55894617-55894636 | MsG0580027191.01.T01:intron | 55.0% | |
| GAATGAGTCGGGGCAGAGAA+TGG | + | Chr5:55894521-55894540 | None:intergenic | 55.0% | |
| GGTGACATTCTCCGTGTCAC+CGG | - | Chr5:55895141-55895160 | MsG0580027191.01.T01:intron | 55.0% | |
| GTAACGGTTCAATCCGGCGT+AGG | + | Chr5:55895115-55895134 | None:intergenic | 55.0% | |
| GTGACATTCTCCGTGTCACC+GGG | - | Chr5:55895142-55895161 | MsG0580027191.01.T01:intron | 55.0% | |
| GTTCGGCCCAATTGAGCTGA+AGG | + | Chr5:55894645-55894664 | None:intergenic | 55.0% | |
| TCACACGCAGGTGGACCTAA+TGG | + | Chr5:55893068-55893087 | None:intergenic | 55.0% | |
| TGCCACATTGGACCCCTGAA+AGG | - | Chr5:55895658-55895677 | MsG0580027191.01.T01:CDS | 55.0% | |
| TGCGTGTGACAAAGACGCCA+AGG | - | Chr5:55893079-55893098 | MsG0580027191.01.T01:CDS | 55.0% | |
| TTGGCGTCTTTGTCACACGC+AGG | + | Chr5:55893080-55893099 | None:intergenic | 55.0% | |
| ! | AGGTCCCGGTTTGAATGTCG+TGG | + | Chr5:55894672-55894691 | None:intergenic | 55.0% |
| ! | CTAGTTGGCCCTGATTCGTG+AGG | + | Chr5:55895036-55895055 | None:intergenic | 55.0% |
| ! | GGTCCCGGTTTGAATGTCGT+GGG | + | Chr5:55894671-55894690 | None:intergenic | 55.0% |
| ! | TTGGCCCTGATTCGTGAGGT+AGG | + | Chr5:55895032-55895051 | None:intergenic | 55.0% |
| !! | GGAGCTTTTGGACTCTAGGG+TGG | - | Chr5:55895611-55895630 | MsG0580027191.01.T01:CDS | 55.0% |
| !! | TGTTGGCCTTACTGAGGTGG+AGG | - | Chr5:55895059-55895078 | MsG0580027191.01.T01:CDS | 55.0% |
| AGCAGACTCCCCGAGTCATG+AGG | - | Chr5:55895383-55895402 | MsG0580027191.01.T01:CDS | 60.0% | |
| GCAGACACGGAGACCATACC+AGG | - | Chr5:55895327-55895346 | MsG0580027191.01.T01:intron | 60.0% | |
| GCGTCTTTGTCACACGCAGG+TGG | + | Chr5:55893077-55893096 | None:intergenic | 60.0% | |
| GGCCTTACTGAGGTGGAGGT+TGG | - | Chr5:55895063-55895082 | MsG0580027191.01.T01:CDS | 60.0% | |
| CAGAGGCAAAGACAGCGCCG+AGG | + | Chr5:55894600-55894619 | None:intergenic | 65.0% | |
| CGCAACCAAGTCCTCCGCCT+CGG | - | Chr5:55894580-55894599 | MsG0580027191.01.T01:intron | 65.0% | |
| CTCGGCGCTGTCTTTGCCTC+TGG | - | Chr5:55894598-55894617 | MsG0580027191.01.T01:intron | 65.0% | |
| GGGCGGGCCAATAAACCACC+TGG | + | Chr5:55894415-55894434 | None:intergenic | 65.0% | |
| ! | AGGCAAAGACAGCGCCGAGG+CGG | + | Chr5:55894597-55894616 | None:intergenic | 65.0% |
| ! | CAAAGACAGCGCCGAGGCGG+AGG | + | Chr5:55894594-55894613 | None:intergenic | 70.0% |
| ! | CAGCGCCGAGGCGGAGGACT+TGG | + | Chr5:55894588-55894607 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 55893038 | 55895689 | 55893038 | ID=MsG0580027191.01;Name=MsG0580027191.01 |
| Chr5 | mRNA | 55893038 | 55895689 | 55893038 | ID=MsG0580027191.01.T01;Parent=MsG0580027191.01;Name=MsG0580027191.01.T01;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|1|1|3|0|588 |
| Chr5 | exon | 55895370 | 55895689 | 55895370 | ID=MsG0580027191.01.T01:exon:12593;Parent=MsG0580027191.01.T01 |
| Chr5 | exon | 55895012 | 55895113 | 55895012 | ID=MsG0580027191.01.T01:exon:12592;Parent=MsG0580027191.01.T01 |
| Chr5 | exon | 55893038 | 55894382 | 55893038 | ID=MsG0580027191.01.T01:exon:12591;Parent=MsG0580027191.01.T01 |
| Chr5 | CDS | 55895370 | 55895689 | 55895370 | ID=MsG0580027191.01.T01:cds;Parent=MsG0580027191.01.T01 |
| Chr5 | CDS | 55895012 | 55895113 | 55895012 | ID=MsG0580027191.01.T01:cds;Parent=MsG0580027191.01.T01 |
| Chr5 | CDS | 55893038 | 55894382 | 55893038 | ID=MsG0580027191.01.T01:cds;Parent=MsG0580027191.01.T01 |
| Gene Sequence |
| Protein sequence |
