Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027064.01.T01 | ABO77440.1 | 91.566 | 332 | 3 | 1 | 59 | 365 | 22 | 353 | 0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027064.01.T01 | Q9M4D8 | 83.735 | 332 | 29 | 1 | 59 | 365 | 22 | 353 | 0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027064.01.T01 | A4ULG0 | 91.566 | 332 | 3 | 1 | 59 | 365 | 22 | 353 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001248.01 | MsG0580027064.01 | 0.846844 | 1.682757e-59 | 2.934497e-56 |
| MsG0180006034.01 | MsG0580027064.01 | 0.820980 | 5.150036e-53 | 4.137172e-50 |
| MsG0180006267.01 | MsG0580027064.01 | 0.843732 | 1.169525e-58 | 1.846817e-55 |
| MsG0280010604.01 | MsG0580027064.01 | 0.882209 | 1.261684e-70 | 7.618757e-67 |
| MsG0280011059.01 | MsG0580027064.01 | 0.825439 | 4.684245e-54 | 4.269448e-51 |
| MsG0480021201.01 | MsG0580027064.01 | -0.852494 | 4.450755e-61 | 9.316608e-58 |
| MsG0480021776.01 | MsG0580027064.01 | 0.807372 | 5.219248e-50 | 2.902017e-47 |
| MsG0480021836.01 | MsG0580027064.01 | 0.866995 | 1.895723e-65 | 6.515263e-62 |
| MsG0580025182.01 | MsG0580027064.01 | 0.816100 | 6.579864e-52 | 4.619729e-49 |
| MsG0380015056.01 | MsG0580027064.01 | 0.818074 | 2.369664e-52 | 1.755996e-49 |
| MsG0380016191.01 | MsG0580027064.01 | 0.804183 | 2.440695e-49 | 1.250194e-46 |
| MsG0380016547.01 | MsG0580027064.01 | 0.861050 | 1.346450e-63 | 3.758690e-60 |
| MsG0580027064.01 | MsG0580027219.01 | 0.923071 | 4.301582e-89 | 1.686856e-84 |
| MsG0580027064.01 | MsG0580028363.01 | 0.805496 | 1.298163e-49 | 6.878025e-47 |
| MsG0580027064.01 | MsG0580029511.01 | -0.819564 | 1.087130e-52 | 8.395264e-50 |
| MsG0580027064.01 | MsG0680032473.01 | 0.833948 | 3.976590e-56 | 4.650650e-53 |
| MsG0580027064.01 | MsG0680034909.01 | 0.816328 | 5.851390e-52 | 4.133977e-49 |
| MsG0580027064.01 | MsG0680035311.01 | 0.823951 | 1.050487e-53 | 9.177521e-51 |
| MsG0580027064.01 | MsG0780036347.01 | 0.815978 | 7.006429e-52 | 4.902563e-49 |
| MsG0580027064.01 | MsG0780037506.01 | 0.807437 | 5.058086e-50 | 2.817142e-47 |
| MsG0580027064.01 | MsG0780040295.01 | 0.827674 | 1.373500e-54 | 1.335023e-51 |
| MsG0580027064.01 | MsG0780040566.01 | 0.815066 | 1.118077e-51 | 7.630402e-49 |
| MsG0580027064.01 | MsG0780041117.01 | 0.812060 | 5.126253e-51 | 3.226057e-48 |
| MsG0580027064.01 | MsG0780041470.01 | 0.832171 | 1.100642e-55 | 1.220454e-52 |
| MsG0580027064.01 | MsG0880042615.01 | 0.817718 | 2.852239e-52 | 2.093137e-49 |
| MsG0580027064.01 | MsG0880043905.01 | -0.811159 | 8.046238e-51 | 4.944056e-48 |
| MsG0580027064.01 | MsG0880044901.01 | 0.810885 | 9.227126e-51 | 5.629094e-48 |
| MsG0580027064.01 | MsG0880045548.01 | 0.807139 | 5.847595e-50 | 3.231710e-47 |
| MsG0580027064.01 | MsG0880046843.01 | 0.810483 | 1.127028e-50 | 6.801602e-48 |
| MsG0280007207.01 | MsG0580027064.01 | 0.810045 | 1.401084e-50 | 8.359293e-48 |
| MsG0280007211.01 | MsG0580027064.01 | 0.828719 | 7.689536e-55 | 7.705319e-52 |
| MsG0280007647.01 | MsG0580027064.01 | -0.809585 | 1.759332e-50 | 1.037055e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027064.01.T01 | MTR_0076s0020 | 91.265 | 332 | 4 | 1 | 59 | 365 | 22 | 353 | 0.0 | 612 |
| MsG0580027064.01.T01 | MTR_8g069905 | 70.393 | 331 | 73 | 1 | 56 | 361 | 21 | 351 | 7.07e-169 | 476 |
| MsG0580027064.01.T01 | MTR_0003s0660 | 62.169 | 378 | 104 | 4 | 20 | 358 | 17 | 394 | 1.79e-161 | 458 |
| MsG0580027064.01.T01 | MTR_7g018310 | 59.788 | 378 | 92 | 5 | 20 | 358 | 17 | 373 | 5.10e-151 | 431 |
| MsG0580027064.01.T01 | MTR_7g018290 | 65.549 | 328 | 88 | 3 | 56 | 358 | 21 | 348 | 1.79e-147 | 421 |
| MsG0580027064.01.T01 | MTR_7g018320 | 58.172 | 361 | 96 | 4 | 20 | 358 | 17 | 344 | 1.89e-136 | 393 |
| MsG0580027064.01.T01 | MTR_2g020990 | 47.131 | 244 | 115 | 4 | 66 | 298 | 28 | 268 | 8.02e-66 | 212 |
| MsG0580027064.01.T01 | MTR_4g118320 | 46.914 | 243 | 116 | 3 | 69 | 298 | 28 | 270 | 5.41e-65 | 210 |
| MsG0580027064.01.T01 | MTR_0076s0010 | 98.077 | 52 | 0 | 1 | 1 | 52 | 1 | 51 | 1.37e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027064.01.T01 | AT3G25570 | 67.378 | 328 | 79 | 3 | 56 | 355 | 19 | 346 | 3.60e-152 | 432 |
| MsG0580027064.01.T01 | AT3G25570 | 67.378 | 328 | 79 | 3 | 56 | 355 | 19 | 346 | 3.60e-152 | 432 |
| MsG0580027064.01.T01 | AT3G02470 | 62.651 | 332 | 95 | 5 | 56 | 358 | 19 | 350 | 9.11e-144 | 412 |
| MsG0580027064.01.T01 | AT3G02470 | 62.651 | 332 | 95 | 5 | 56 | 358 | 19 | 350 | 9.11e-144 | 412 |
| MsG0580027064.01.T01 | AT3G02470 | 62.651 | 332 | 95 | 5 | 56 | 358 | 19 | 350 | 9.11e-144 | 412 |
| MsG0580027064.01.T01 | AT5G15950 | 59.884 | 344 | 104 | 5 | 56 | 365 | 19 | 362 | 5.10e-139 | 400 |
| MsG0580027064.01.T01 | AT5G15950 | 59.884 | 344 | 104 | 5 | 56 | 365 | 19 | 362 | 5.10e-139 | 400 |
| MsG0580027064.01.T01 | AT5G18930 | 53.617 | 235 | 100 | 4 | 69 | 295 | 30 | 263 | 4.25e-74 | 233 |
| MsG0580027064.01.T01 | AT3G17717 | 48.454 | 97 | 49 | 1 | 216 | 312 | 17 | 112 | 8.67e-24 | 95.5 |
Find 95 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCACAGATCTGACTTTA+AGG | 0.158308 | 5:+52533825 | None:intergenic |
| AAGTCACATATTTCAGAATT+TGG | 0.203322 | 5:+52533485 | None:intergenic |
| CAGAGTAAACATGCCAATTC+TGG | 0.233926 | 5:+52533660 | None:intergenic |
| AGGCAGCACGGCTTATATTA+TGG | 0.244404 | 5:-52533699 | MsG0580027064.01.T01:CDS |
| AATCCCACCCATATTGAAAT+TGG | 0.267826 | 5:-52533861 | MsG0580027064.01.T01:CDS |
| CACCCATTCCAAGCCCTTCT+AGG | 0.285576 | 5:+52533190 | None:intergenic |
| TGGGATTGCAAGCAGTAATT+TGG | 0.289958 | 5:+52533877 | None:intergenic |
| CGTGAAGAGAGGAGCCTAGA+AGG | 0.310976 | 5:-52533204 | MsG0580027064.01.T01:CDS |
| GGACTCGGCCAATTTCAATA+TGG | 0.320655 | 5:+52533853 | None:intergenic |
| CGGCAGTCTTGACAAACTTT+TGG | 0.351241 | 5:+52533154 | None:intergenic |
| GGGTTGTTCGCTGGATGTTA+AGG | 0.371228 | 5:-52533235 | MsG0580027064.01.T01:CDS |
| TCTTGTAGGCATAAACAAAA+AGG | 0.372256 | 5:+52533924 | None:intergenic |
| AGATCTGACTTTAAGGGAAA+TGG | 0.377918 | 5:+52533832 | None:intergenic |
| GCATAACTGAACCCATCTTC+TGG | 0.388865 | 5:+52533392 | None:intergenic |
| GCTGTCCTTGATGGCTACTT+TGG | 0.400659 | 5:-52533734 | MsG0580027064.01.T01:CDS |
| ATCTCTCACAAAATCCCAAC+TGG | 0.403145 | 5:-52534032 | MsG0580027064.01.T01:CDS |
| GATGGCTACTTTGGAAAGCT+TGG | 0.406979 | 5:-52533725 | MsG0580027064.01.T01:CDS |
| CAGCACTTAAGTGTTGATCT+AGG | 0.408052 | 5:+52533120 | None:intergenic |
| ATGGCTACTTTGGAAAGCTT+GGG | 0.411273 | 5:-52533724 | MsG0580027064.01.T01:CDS |
| GAAGAAGTAGCTGTCCTTGA+TGG | 0.417679 | 5:-52533743 | MsG0580027064.01.T01:CDS |
| GGCAGCACGGCTTATATTAT+GGG | 0.419414 | 5:-52533698 | MsG0580027064.01.T01:CDS |
| TACTTTGGAAAGCTTGGGTC+AGG | 0.421656 | 5:-52533719 | MsG0580027064.01.T01:CDS |
| TTTCCTGATGCCAGAGTTCA+CGG | 0.425895 | 5:+52533514 | None:intergenic |
| GTGTGTAGACAGAGTCGTTT+GGG | 0.432980 | 5:+52533618 | None:intergenic |
| GATCCGATGAAGCCCAGAAT+TGG | 0.434903 | 5:-52533673 | MsG0580027064.01.T01:CDS |
| GGTTGTTCGCTGGATGTTAA+GGG | 0.435015 | 5:-52533234 | MsG0580027064.01.T01:CDS |
| CCTCACAGATCTGACTTTAA+GGG | 0.436074 | 5:+52533826 | None:intergenic |
| ATTCATGTTACTCCAGAAGA+TGG | 0.452259 | 5:-52533404 | MsG0580027064.01.T01:CDS |
| GCCAGAGTTCACGGTCATCT+TGG | 0.454845 | 5:+52533523 | None:intergenic |
| GTTTGAGCAGGGTTGTTCGC+TGG | 0.461205 | 5:-52533244 | MsG0580027064.01.T01:intron |
| GAGAGGAGCCTAGAAGGGCT+TGG | 0.469686 | 5:-52533198 | MsG0580027064.01.T01:CDS |
| GACAGAGTCGTTTGGGCTCA+CGG | 0.470139 | 5:+52533625 | None:intergenic |
| AGCAATGAATCTGAATGAAT+TGG | 0.470356 | 5:-52533339 | MsG0580027064.01.T01:CDS |
| AGTGGCGATGAGGGAAAGAC+TGG | 0.471304 | 5:+52533771 | None:intergenic |
| CAGTAATTTGGTAGTACCAC+AGG | 0.471609 | 5:+52533889 | None:intergenic |
| AGCCTAGAAGGGCTTGGAAT+GGG | 0.471610 | 5:-52533192 | MsG0580027064.01.T01:CDS |
| GACTCGGCCAATTTCAATAT+GGG | 0.472381 | 5:+52533854 | None:intergenic |
| TGACCGTGAACTCTGGCATC+AGG | 0.476580 | 5:-52533517 | MsG0580027064.01.T01:CDS |
| TATGCAAGCTTTGAGACTGC+TGG | 0.481178 | 5:-52533374 | MsG0580027064.01.T01:CDS |
| AGAGTAAACATGCCAATTCT+GGG | 0.482441 | 5:+52533661 | None:intergenic |
| ATCAAGGACAGCTACTTCTT+CGG | 0.483365 | 5:+52533745 | None:intergenic |
| AGTGTGTAGACAGAGTCGTT+TGG | 0.483944 | 5:+52533617 | None:intergenic |
| GAAACAATGGTGCACTCAGC+TGG | 0.491991 | 5:+52533995 | None:intergenic |
| GACTTTAAGGGAAATGGACT+CGG | 0.492549 | 5:+52533838 | None:intergenic |
| TGACGATTTACTACTACTAC+TGG | 0.495409 | 5:+52534572 | None:intergenic |
| GCCAAGATGACCGTGAACTC+TGG | 0.501551 | 5:-52533524 | MsG0580027064.01.T01:CDS |
| TGAGGGAAAGACTGGGCACC+AGG | 0.502643 | 5:+52533779 | None:intergenic |
| CAGCTACTTCTTCGGAAAAG+TGG | 0.518616 | 5:+52533753 | None:intergenic |
| TGCAAGAATCTCATCCAGTT+GGG | 0.520638 | 5:+52534018 | None:intergenic |
| TGCTTTCTCTCTGTCTAAGC+CGG | 0.526097 | 5:+52533580 | None:intergenic |
| AACTTCTTGATTCCACCGTT+AGG | 0.527282 | 5:+52534498 | None:intergenic |
| TATTCAATGAATTCTGTTGA+GGG | 0.527553 | 5:-52533443 | MsG0580027064.01.T01:CDS |
| ACACTCGAGATGTGCATGAC+CGG | 0.532189 | 5:-52533599 | MsG0580027064.01.T01:CDS |
| CTAGATCAACACTTAAGTGC+TGG | 0.535337 | 5:-52533119 | MsG0580027064.01.T01:CDS |
| GTGCAAGAATCTCATCCAGT+TGG | 0.545202 | 5:+52534017 | None:intergenic |
| CTTCGGAAAAGTGGCGATGA+GGG | 0.545675 | 5:+52533762 | None:intergenic |
| ATCTTAAACCCCTCCCGTGA+GGG | 0.547240 | 5:+52534053 | None:intergenic |
| ATGCCAATTCTGGGCTTCAT+CGG | 0.548303 | 5:+52533670 | None:intergenic |
| GCTTTCCAAAGTAGCCATCA+AGG | 0.551420 | 5:+52533729 | None:intergenic |
| GTCTTCAATGCTGTATCCGA+GGG | 0.553166 | 5:+52534527 | None:intergenic |
| ATCTTCTGGAGTAACATGAA+TGG | 0.557011 | 5:+52533406 | None:intergenic |
| GAGCCTAGAAGGGCTTGGAA+TGG | 0.557133 | 5:-52533193 | MsG0580027064.01.T01:CDS |
| AATGAATCTGAATGAATTGG+TGG | 0.561345 | 5:-52533336 | MsG0580027064.01.T01:CDS |
| GTCAACATCGTCATTTGCTA+AGG | 0.561466 | 5:+52533970 | None:intergenic |
| TTCATGTTACTCCAGAAGAT+GGG | 0.561810 | 5:-52533403 | MsG0580027064.01.T01:CDS |
| TTATTCAATGAATTCTGTTG+AGG | 0.563786 | 5:-52533444 | MsG0580027064.01.T01:CDS |
| AATGAGCTAATGGAGTCTAA+AGG | 0.565907 | 5:-52534609 | None:intergenic |
| CGGCCAATTTCAATATGGGT+GGG | 0.578309 | 5:+52533858 | None:intergenic |
| GTGAAGAGAGGAGCCTAGAA+GGG | 0.583585 | 5:-52533203 | MsG0580027064.01.T01:CDS |
| CTAGAAGGGCTTGGAATGGG+TGG | 0.585068 | 5:-52533189 | MsG0580027064.01.T01:CDS |
| ATTGAAGACATTCGTCCTAA+CGG | 0.595565 | 5:-52534513 | MsG0580027064.01.T01:CDS |
| TCGGCCAATTTCAATATGGG+TGG | 0.595661 | 5:+52533857 | None:intergenic |
| AAAGCTTGGGTCAGGCAGCA+CGG | 0.596517 | 5:-52533711 | MsG0580027064.01.T01:CDS |
| CTTAGACAGAGAGAAAGCAT+TGG | 0.606273 | 5:-52533576 | MsG0580027064.01.T01:CDS |
| TGTCTTCAATGCTGTATCCG+AGG | 0.610451 | 5:+52534526 | None:intergenic |
| TCTGAATGAATTGGTGGTGA+AGG | 0.612452 | 5:-52533330 | MsG0580027064.01.T01:intron |
| AGGGATACTGTCGTGAAGAG+AGG | 0.619171 | 5:-52533215 | MsG0580027064.01.T01:CDS |
| TCTTCGGAAAAGTGGCGATG+AGG | 0.619318 | 5:+52533761 | None:intergenic |
| TTATTCTACGAAGCTCCCCT+CGG | 0.625181 | 5:-52534543 | MsG0580027064.01.T01:CDS |
| TGATCTAGGCGAGCCACAGT+CGG | 0.631715 | 5:+52533134 | None:intergenic |
| TTTGTCAAGACTGCCGACTG+TGG | 0.633166 | 5:-52533147 | MsG0580027064.01.T01:CDS |
| GAGCTAATGGAGTCTAAAGG+AGG | 0.647473 | 5:-52534606 | None:intergenic |
| TGGGCTCACGGAATCTGCAG+AGG | 0.650938 | 5:+52533637 | None:intergenic |
| ATTTGCTAAGGAAGAAACAA+TGG | 0.659529 | 5:+52533982 | None:intergenic |
| GCTGGACTCAGACAGAACAT+AGG | 0.663634 | 5:+52533946 | None:intergenic |
| AGCACGGCTTATATTATGGG+TGG | 0.666611 | 5:-52533695 | MsG0580027064.01.T01:CDS |
| GATCTTAAACCCCTCCCGTG+AGG | 0.672665 | 5:+52534052 | None:intergenic |
| GTGGCGATGAGGGAAAGACT+GGG | 0.690654 | 5:+52533772 | None:intergenic |
| CCCTTAAAGTCAGATCTGTG+AGG | 0.691736 | 5:-52533826 | MsG0580027064.01.T01:CDS |
| AAGATCATAATCAAAACCTG+TGG | 0.691808 | 5:-52533905 | MsG0580027064.01.T01:CDS |
| GAAGACATTCGTCCTAACGG+TGG | 0.692317 | 5:-52534510 | MsG0580027064.01.T01:CDS |
| GAATTCATTGAATAACCACA+AGG | 0.720077 | 5:+52533452 | None:intergenic |
| AGGTGAATGAACACTCACGT+TGG | 0.738781 | 5:+52534458 | None:intergenic |
| AGATCTGTGAGGTACACCCG+AGG | 0.738828 | 5:-52533815 | MsG0580027064.01.T01:CDS |
| TCTTCAATGCTGTATCCGAG+GGG | 0.754164 | 5:+52534528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTGGAAAAAAAAAAAAT+AGG | + | Chr5:52533332-52533351 | None:intergenic | 15.0% |
| !! | ACCAAATACATATATTATCA+AGG | + | Chr5:52533260-52533279 | None:intergenic | 20.0% |
| !!! | ACCTTGATAATATATGTATT+TGG | - | Chr5:52533256-52533275 | MsG0580027064.01.T01:intron | 20.0% |
| !!! | AGCTTTTTTTGTTTTTGTTT+AGG | - | Chr5:52533429-52533448 | MsG0580027064.01.T01:CDS | 20.0% |
| ! | AAGTCACATATTTCAGAATT+TGG | + | Chr5:52534213-52534232 | None:intergenic | 25.0% |
| ! | TATTCAATGAATTCTGTTGA+GGG | - | Chr5:52534252-52534271 | MsG0580027064.01.T01:intron | 25.0% |
| ! | TTATTCAATGAATTCTGTTG+AGG | - | Chr5:52534251-52534270 | MsG0580027064.01.T01:intron | 25.0% |
| !!! | TTTGGAAAGATGTATTTTGA+AGG | + | Chr5:52533470-52533489 | None:intergenic | 25.0% |
| AAGATCATAATCAAAACCTG+TGG | - | Chr5:52533790-52533809 | MsG0580027064.01.T01:CDS | 30.0% | |
| AATGAATCTGAATGAATTGG+TGG | - | Chr5:52534359-52534378 | MsG0580027064.01.T01:intron | 30.0% | |
| AGCAATGAATCTGAATGAAT+TGG | - | Chr5:52534356-52534375 | MsG0580027064.01.T01:intron | 30.0% | |
| GAATTCATTGAATAACCACA+AGG | + | Chr5:52534246-52534265 | None:intergenic | 30.0% | |
| TCTTGTAGGCATAAACAAAA+AGG | + | Chr5:52533774-52533793 | None:intergenic | 30.0% | |
| ! | ATTTGCTAAGGAAGAAACAA+TGG | + | Chr5:52533716-52533735 | None:intergenic | 30.0% |
| !!! | GGTTTTGATTATGATCTTGT+AGG | + | Chr5:52533788-52533807 | None:intergenic | 30.0% |
| !!! | GTTTTGAAGGATTTGAAAAG+AGG | - | Chr5:52533582-52533601 | MsG0580027064.01.T01:CDS | 30.0% |
| AAAGACACACAGAAGAAACA+AGG | + | Chr5:52533526-52533545 | None:intergenic | 35.0% | |
| AATCCCACCCATATTGAAAT+TGG | - | Chr5:52533834-52533853 | MsG0580027064.01.T01:CDS | 35.0% | |
| ACAGCTACAGAAAACTCATT+TGG | + | Chr5:52534407-52534426 | None:intergenic | 35.0% | |
| AGAGTAAACATGCCAATTCT+GGG | + | Chr5:52534037-52534056 | None:intergenic | 35.0% | |
| ATAAAAAACTGCTTGCATGC+AGG | + | Chr5:52533408-52533427 | None:intergenic | 35.0% | |
| ATCAGTATGGAATATCAGGA+TGG | + | Chr5:52533376-52533395 | None:intergenic | 35.0% | |
| ATTCATGTTACTCCAGAAGA+TGG | - | Chr5:52534291-52534310 | MsG0580027064.01.T01:intron | 35.0% | |
| ATTGAAGACATTCGTCCTAA+CGG | - | Chr5:52533182-52533201 | MsG0580027064.01.T01:CDS | 35.0% | |
| CTACAGAAAACTCATTTGGT+TGG | + | Chr5:52534403-52534422 | None:intergenic | 35.0% | |
| GAGAATCAGTATGGAATATC+AGG | + | Chr5:52533380-52533399 | None:intergenic | 35.0% | |
| TAAAAAACTGCTTGCATGCA+GGG | + | Chr5:52533407-52533426 | None:intergenic | 35.0% | |
| TGAAGGATTTGAAAAGAGGT+TGG | - | Chr5:52533586-52533605 | MsG0580027064.01.T01:CDS | 35.0% | |
| TGACGATTTACTACTACTAC+TGG | + | Chr5:52533126-52533145 | None:intergenic | 35.0% | |
| TTCATGTTACTCCAGAAGAT+GGG | - | Chr5:52534292-52534311 | MsG0580027064.01.T01:intron | 35.0% | |
| ! | AGATCTGACTTTAAGGGAAA+TGG | + | Chr5:52533866-52533885 | None:intergenic | 35.0% |
| !! | ATCTTCTGGAGTAACATGAA+TGG | + | Chr5:52534292-52534311 | None:intergenic | 35.0% |
| !! | GACTTTGATTTTGAACCTTG+TGG | - | Chr5:52534228-52534247 | MsG0580027064.01.T01:intron | 35.0% |
| !!! | GTTTCTGCAATTGGTTTTGA+AGG | - | Chr5:52533569-52533588 | MsG0580027064.01.T01:CDS | 35.0% |
| AAAAAACTGCTTGCATGCAG+GGG | + | Chr5:52533406-52533425 | None:intergenic | 40.0% | |
| AACTTCTTGATTCCACCGTT+AGG | + | Chr5:52533200-52533219 | None:intergenic | 40.0% | |
| ACCTCACAGATCTGACTTTA+AGG | + | Chr5:52533873-52533892 | None:intergenic | 40.0% | |
| AGAGTACAATCGCAAAGAGA+GGG | + | Chr5:52533493-52533512 | None:intergenic | 40.0% | |
| AGGAAAAATGAAACTGCCTC+GGG | + | Chr5:52533899-52533918 | None:intergenic | 40.0% | |
| ATCAAGGACAGCTACTTCTT+CGG | + | Chr5:52533953-52533972 | None:intergenic | 40.0% | |
| ATCTCTCACAAAATCCCAAC+TGG | - | Chr5:52533663-52533682 | MsG0580027064.01.T01:CDS | 40.0% | |
| CAGAGTAAACATGCCAATTC+TGG | + | Chr5:52534038-52534057 | None:intergenic | 40.0% | |
| CAGGAAAAATGAAACTGCCT+CGG | + | Chr5:52533900-52533919 | None:intergenic | 40.0% | |
| CCTCACAGATCTGACTTTAA+GGG | + | Chr5:52533872-52533891 | None:intergenic | 40.0% | |
| CTAGATCAACACTTAAGTGC+TGG | - | Chr5:52534576-52534595 | MsG0580027064.01.T01:CDS | 40.0% | |
| GACTCGGCCAATTTCAATAT+GGG | + | Chr5:52533844-52533863 | None:intergenic | 40.0% | |
| GTAGGCATAAACAAAAAGGC+TGG | + | Chr5:52533770-52533789 | None:intergenic | 40.0% | |
| GTGTCTTTCTGTTTGAACTG+TGG | - | Chr5:52533538-52533557 | MsG0580027064.01.T01:CDS | 40.0% | |
| TGCAAGAATCTCATCCAGTT+GGG | + | Chr5:52533680-52533699 | None:intergenic | 40.0% | |
| TGGGATTGCAAGCAGTAATT+TGG | + | Chr5:52533821-52533840 | None:intergenic | 40.0% | |
| ! | AAGAGTACAATCGCAAAGAG+AGG | + | Chr5:52533494-52533513 | None:intergenic | 40.0% |
| ! | ATGGCTACTTTGGAAAGCTT+GGG | - | Chr5:52533971-52533990 | MsG0580027064.01.T01:CDS | 40.0% |
| ! | CAGTAATTTGGTAGTACCAC+AGG | + | Chr5:52533809-52533828 | None:intergenic | 40.0% |
| ! | CTTAGACAGAGAGAAAGCAT+TGG | - | Chr5:52534119-52534138 | MsG0580027064.01.T01:intron | 40.0% |
| ! | GACTTTAAGGGAAATGGACT+CGG | + | Chr5:52533860-52533879 | None:intergenic | 40.0% |
| ! | GTCAACATCGTCATTTGCTA+AGG | + | Chr5:52533728-52533747 | None:intergenic | 40.0% |
| ! | GTTTTCTGTAGCTGTTCATG+TGG | - | Chr5:52534412-52534431 | MsG0580027064.01.T01:intron | 40.0% |
| !! | CAGCACTTAAGTGTTGATCT+AGG | + | Chr5:52534578-52534597 | None:intergenic | 40.0% |
| !! | TCTGAATGAATTGGTGGTGA+AGG | - | Chr5:52534365-52534384 | MsG0580027064.01.T01:intron | 40.0% |
| AAAAAGTCCAGGGTCGGAAA+AGG | + | Chr5:52533618-52533637 | None:intergenic | 45.0% | |
| ACAATCGCAAAGAGAGGGTT+TGG | + | Chr5:52533488-52533507 | None:intergenic | 45.0% | |
| ACCAATTGCAGAAACTGCCA+TGG | + | Chr5:52533564-52533583 | None:intergenic | 45.0% | |
| AGCACGGCTTATATTATGGG+TGG | - | Chr5:52534000-52534019 | MsG0580027064.01.T01:CDS | 45.0% | |
| AGGCAGCACGGCTTATATTA+TGG | - | Chr5:52533996-52534015 | MsG0580027064.01.T01:CDS | 45.0% | |
| AGGTGAATGAACACTCACGT+TGG | + | Chr5:52533240-52533259 | None:intergenic | 45.0% | |
| AGTGTGTAGACAGAGTCGTT+TGG | + | Chr5:52534081-52534100 | None:intergenic | 45.0% | |
| ATGCCAATTCTGGGCTTCAT+CGG | + | Chr5:52534028-52534047 | None:intergenic | 45.0% | |
| CAGCTACTTCTTCGGAAAAG+TGG | + | Chr5:52533945-52533964 | None:intergenic | 45.0% | |
| CCCTTAAAGTCAGATCTGTG+AGG | - | Chr5:52533869-52533888 | MsG0580027064.01.T01:CDS | 45.0% | |
| CGGCCAATTTCAATATGGGT+GGG | + | Chr5:52533840-52533859 | None:intergenic | 45.0% | |
| GAAGAAGTAGCTGTCCTTGA+TGG | - | Chr5:52533952-52533971 | MsG0580027064.01.T01:CDS | 45.0% | |
| GCATAACTGAACCCATCTTC+TGG | + | Chr5:52534306-52534325 | None:intergenic | 45.0% | |
| GCTTTCCAAAGTAGCCATCA+AGG | + | Chr5:52533969-52533988 | None:intergenic | 45.0% | |
| GGACTCGGCCAATTTCAATA+TGG | + | Chr5:52533845-52533864 | None:intergenic | 45.0% | |
| GGCAGCACGGCTTATATTAT+GGG | - | Chr5:52533997-52534016 | MsG0580027064.01.T01:CDS | 45.0% | |
| GGTTGTTCGCTGGATGTTAA+GGG | - | Chr5:52534461-52534480 | MsG0580027064.01.T01:intron | 45.0% | |
| GTCTTCAATGCTGTATCCGA+GGG | + | Chr5:52533171-52533190 | None:intergenic | 45.0% | |
| GTGCAAGAATCTCATCCAGT+TGG | + | Chr5:52533681-52533700 | None:intergenic | 45.0% | |
| GTGTGTAGACAGAGTCGTTT+GGG | + | Chr5:52534080-52534099 | None:intergenic | 45.0% | |
| TCGGCCAATTTCAATATGGG+TGG | + | Chr5:52533841-52533860 | None:intergenic | 45.0% | |
| TCTTCAATGCTGTATCCGAG+GGG | + | Chr5:52533170-52533189 | None:intergenic | 45.0% | |
| TGAGGGTCAGAAAAAGTCCA+GGG | + | Chr5:52533628-52533647 | None:intergenic | 45.0% | |
| TGCTTTCTCTCTGTCTAAGC+CGG | + | Chr5:52534118-52534137 | None:intergenic | 45.0% | |
| TGTCTTCAATGCTGTATCCG+AGG | + | Chr5:52533172-52533191 | None:intergenic | 45.0% | |
| TTATTCTACGAAGCTCCCCT+CGG | - | Chr5:52533152-52533171 | MsG0580027064.01.T01:CDS | 45.0% | |
| TTCTGTTTGAACTGTGGCCA+TGG | - | Chr5:52533544-52533563 | MsG0580027064.01.T01:CDS | 45.0% | |
| TTTCCTGATGCCAGAGTTCA+CGG | + | Chr5:52534184-52534203 | None:intergenic | 45.0% | |
| ! | CGGCAGTCTTGACAAACTTT+TGG | + | Chr5:52534544-52534563 | None:intergenic | 45.0% |
| ! | GAAATTTCCTTTTCCGACCC+TGG | - | Chr5:52533608-52533627 | MsG0580027064.01.T01:CDS | 45.0% |
| ! | GATGGCTACTTTGGAAAGCT+TGG | - | Chr5:52533970-52533989 | MsG0580027064.01.T01:CDS | 45.0% |
| ! | TACTTTGGAAAGCTTGGGTC+AGG | - | Chr5:52533976-52533995 | MsG0580027064.01.T01:CDS | 45.0% |
| !! | CGAGGCAGTTTCATTTTTCC+TGG | - | Chr5:52533898-52533917 | MsG0580027064.01.T01:CDS | 45.0% |
| !! | TATGCAAGCTTTGAGACTGC+TGG | - | Chr5:52534321-52534340 | MsG0580027064.01.T01:intron | 45.0% |
| !! | TGGACTTTTTCTGACCCTCA+CGG | - | Chr5:52533628-52533647 | MsG0580027064.01.T01:CDS | 45.0% |
| ACACTCGAGATGTGCATGAC+CGG | - | Chr5:52534096-52534115 | MsG0580027064.01.T01:intron | 50.0% | |
| AGCCTAGAAGGGCTTGGAAT+GGG | - | Chr5:52534503-52534522 | MsG0580027064.01.T01:CDS | 50.0% | |
| AGGGATACTGTCGTGAAGAG+AGG | - | Chr5:52534480-52534499 | MsG0580027064.01.T01:CDS | 50.0% | |
| ATCTTAAACCCCTCCCGTGA+GGG | + | Chr5:52533645-52533664 | None:intergenic | 50.0% | |
| CAGGGGAACGAGAATCAGTA+TGG | + | Chr5:52533389-52533408 | None:intergenic | 50.0% | |
| CTTCGGAAAAGTGGCGATGA+GGG | + | Chr5:52533936-52533955 | None:intergenic | 50.0% | |
| GAAACAATGGTGCACTCAGC+TGG | + | Chr5:52533703-52533722 | None:intergenic | 50.0% | |
| GAAGACATTCGTCCTAACGG+TGG | - | Chr5:52533185-52533204 | MsG0580027064.01.T01:CDS | 50.0% | |
| GATCCGATGAAGCCCAGAAT+TGG | - | Chr5:52534022-52534041 | MsG0580027064.01.T01:CDS | 50.0% | |
| GCAAGCAAGTCGTTTGAGCA+GGG | - | Chr5:52534440-52534459 | MsG0580027064.01.T01:intron | 50.0% | |
| GCCATGGCAGTTTCTGCAAT+TGG | - | Chr5:52533560-52533579 | MsG0580027064.01.T01:CDS | 50.0% | |
| GCTGGACTCAGACAGAACAT+AGG | + | Chr5:52533752-52533771 | None:intergenic | 50.0% | |
| GGGTTGTTCGCTGGATGTTA+AGG | - | Chr5:52534460-52534479 | MsG0580027064.01.T01:intron | 50.0% | |
| GGTCAGAAAAAGTCCAGGGT+CGG | + | Chr5:52533624-52533643 | None:intergenic | 50.0% | |
| GTGAAGAGAGGAGCCTAGAA+GGG | - | Chr5:52534492-52534511 | MsG0580027064.01.T01:CDS | 50.0% | |
| GTGAGGGTCAGAAAAAGTCC+AGG | + | Chr5:52533629-52533648 | None:intergenic | 50.0% | |
| TCTTCGGAAAAGTGGCGATG+AGG | + | Chr5:52533937-52533956 | None:intergenic | 50.0% | |
| TGCAAGCAAGTCGTTTGAGC+AGG | - | Chr5:52534439-52534458 | MsG0580027064.01.T01:intron | 50.0% | |
| ! | GCTGTCCTTGATGGCTACTT+TGG | - | Chr5:52533961-52533980 | MsG0580027064.01.T01:CDS | 50.0% |
| ! | TTTGTCAAGACTGCCGACTG+TGG | - | Chr5:52534548-52534567 | MsG0580027064.01.T01:CDS | 50.0% |
| ! | TTTTTCTGACCCTCACGGGA+GGG | - | Chr5:52533633-52533652 | MsG0580027064.01.T01:CDS | 50.0% |
| !! | GGACTTTTTCTGACCCTCAC+GGG | - | Chr5:52533629-52533648 | MsG0580027064.01.T01:CDS | 50.0% |
| AAAGCTTGGGTCAGGCAGCA+CGG | - | Chr5:52533984-52534003 | MsG0580027064.01.T01:CDS | 55.0% | |
| AGATCTGTGAGGTACACCCG+AGG | - | Chr5:52533880-52533899 | MsG0580027064.01.T01:CDS | 55.0% | |
| AGTGGCGATGAGGGAAAGAC+TGG | + | Chr5:52533927-52533946 | None:intergenic | 55.0% | |
| CACCCATTCCAAGCCCTTCT+AGG | + | Chr5:52534508-52534527 | None:intergenic | 55.0% | |
| CGTGAAGAGAGGAGCCTAGA+AGG | - | Chr5:52534491-52534510 | MsG0580027064.01.T01:CDS | 55.0% | |
| CTAGAAGGGCTTGGAATGGG+TGG | - | Chr5:52534506-52534525 | MsG0580027064.01.T01:CDS | 55.0% | |
| GACAGAGTCGTTTGGGCTCA+CGG | + | Chr5:52534073-52534092 | None:intergenic | 55.0% | |
| GAGCCTAGAAGGGCTTGGAA+TGG | - | Chr5:52534502-52534521 | MsG0580027064.01.T01:CDS | 55.0% | |
| GAGCGCACTGCACAAGAGTT+TGG | + | Chr5:52533348-52533367 | None:intergenic | 55.0% | |
| GATCTTAAACCCCTCCCGTG+AGG | + | Chr5:52533646-52533665 | None:intergenic | 55.0% | |
| GCCAAGATGACCGTGAACTC+TGG | - | Chr5:52534171-52534190 | MsG0580027064.01.T01:intron | 55.0% | |
| GCCAGAGTTCACGGTCATCT+TGG | + | Chr5:52534175-52534194 | None:intergenic | 55.0% | |
| GTGGCGATGAGGGAAAGACT+GGG | + | Chr5:52533926-52533945 | None:intergenic | 55.0% | |
| GTTTGAGCAGGGTTGTTCGC+TGG | - | Chr5:52534451-52534470 | MsG0580027064.01.T01:intron | 55.0% | |
| TGACCGTGAACTCTGGCATC+AGG | - | Chr5:52534178-52534197 | MsG0580027064.01.T01:intron | 55.0% | |
| TGATCTAGGCGAGCCACAGT+CGG | + | Chr5:52534564-52534583 | None:intergenic | 55.0% | |
| ! | CTTTTTCTGACCCTCACGGG+AGG | - | Chr5:52533632-52533651 | MsG0580027064.01.T01:CDS | 55.0% |
| ! | TTTTCTGACCCTCACGGGAG+GGG | - | Chr5:52533634-52533653 | MsG0580027064.01.T01:CDS | 55.0% |
| GAGAGGAGCCTAGAAGGGCT+TGG | - | Chr5:52534497-52534516 | MsG0580027064.01.T01:CDS | 60.0% | |
| TGAGGGAAAGACTGGGCACC+AGG | + | Chr5:52533919-52533938 | None:intergenic | 60.0% | |
| TGGGCTCACGGAATCTGCAG+AGG | + | Chr5:52534061-52534080 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 52533095 | 52534622 | 52533095 | ID=MsG0580027064.01;Name=MsG0580027064.01 |
| Chr5 | mRNA | 52533095 | 52534622 | 52533095 | ID=MsG0580027064.01.T01;Parent=MsG0580027064.01;Name=MsG0580027064.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|0.5|0.66|3|0|365 |
| Chr5 | exon | 52534470 | 52534622 | 52534470 | ID=MsG0580027064.01.T01:exon:17240;Parent=MsG0580027064.01.T01 |
| Chr5 | exon | 52533331 | 52534113 | 52533331 | ID=MsG0580027064.01.T01:exon:17239;Parent=MsG0580027064.01.T01 |
| Chr5 | exon | 52533095 | 52533256 | 52533095 | ID=MsG0580027064.01.T01:exon:17238;Parent=MsG0580027064.01.T01 |
| Chr5 | CDS | 52534470 | 52534622 | 52534470 | ID=MsG0580027064.01.T01:cds;Parent=MsG0580027064.01.T01 |
| Chr5 | CDS | 52533331 | 52534113 | 52533331 | ID=MsG0580027064.01.T01:cds;Parent=MsG0580027064.01.T01 |
| Chr5 | CDS | 52533095 | 52533256 | 52533095 | ID=MsG0580027064.01.T01:cds;Parent=MsG0580027064.01.T01 |
| Gene Sequence |
| Protein sequence |
