AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027410.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027410.01.T01 MTR_5g056510 99.518 415 2 0 1 415 82 496 0.0 861
MsG0580027410.01.T01 MTR_1g110930 92.771 415 30 0 1 415 82 496 0.0 814
MsG0580027410.01.T01 MTR_4g070270 68.704 409 128 0 1 409 94 502 0.0 611
MsG0580027410.01.T01 MTR_1g041085 65.385 416 143 1 1 415 103 518 0.0 572
MsG0580027410.01.T01 MTR_1g076430 63.942 416 149 1 1 415 97 512 0.0 570
MsG0580027410.01.T01 MTR_2g054940 65.133 413 143 1 1 412 96 508 0.0 567
MsG0580027410.01.T01 MTR_7g118170 64.146 410 139 3 7 410 122 529 0.0 555
MsG0580027410.01.T01 MTR_4g113280 61.836 414 144 3 1 412 85 486 0.0 539
MsG0580027410.01.T01 MTR_7g081695 63.391 407 136 2 1 406 96 490 0.0 531
MsG0580027410.01.T01 MTR_3g105550 56.905 420 170 3 1 409 117 536 2.87e-180 513
MsG0580027410.01.T01 MTR_2g007020 54.015 411 185 3 2 410 44 452 2.70e-169 482
MsG0580027410.01.T01 MTR_4g054415 53.431 408 186 3 5 409 19 425 5.35e-158 452
MsG0580027410.01.T01 MTR_4g054630 53.431 408 186 3 5 409 60 466 7.58e-158 454
MsG0580027410.01.T01 MTR_1g102290 52.334 407 192 2 3 407 78 484 1.47e-157 453
MsG0580027410.01.T01 MTR_2g436480 52.099 405 191 2 7 409 48 451 1.80e-156 449
MsG0580027410.01.T01 MTR_6g074880 53.902 410 185 3 5 411 62 470 1.19e-155 448
MsG0580027410.01.T01 MTR_2g013740 53.671 395 180 1 4 398 109 500 3.67e-155 448
MsG0580027410.01.T01 MTR_7g118160 52.567 409 149 4 6 411 55 421 7.66e-154 442
MsG0580027410.01.T01 MTR_3g072940 51.843 407 193 3 3 407 78 483 1.54e-150 436
MsG0580027410.01.T01 MTR_3g072980 51.843 407 193 3 3 407 78 483 1.70e-150 436
MsG0580027410.01.T01 MTR_6g032965 52.815 373 175 1 39 410 13 385 1.60e-147 424
MsG0580027410.01.T01 MTR_6g051440 51.117 403 194 3 7 407 81 482 1.48e-139 407
MsG0580027410.01.T01 MTR_1g115560 39.394 429 230 6 3 406 28 451 7.48e-110 332
MsG0580027410.01.T01 MTR_4g062270 40.244 410 236 5 3 406 27 433 1.86e-108 327
MsG0580027410.01.T01 MTR_2g096210 41.135 423 229 7 3 408 27 446 6.71e-108 327
MsG0580027410.01.T01 MTR_4g062190 39.623 424 228 7 3 406 27 442 5.87e-107 324
MsG0580027410.01.T01 MTR_4g062170 40.191 418 233 6 3 406 27 441 3.85e-104 317
MsG0580027410.01.T01 MTR_4g054260 49.805 257 108 4 156 409 87 325 9.37e-80 249
MsG0580027410.01.T01 MTR_4g053905 56.875 160 66 2 252 409 1 159 1.27e-59 191
MsG0580027410.01.T01 MTR_7g086260 69.355 62 17 1 247 306 22 83 3.01e-19 82.4
MsG0580027410.01.T01 MTR_4g054265 37.000 100 63 0 5 104 19 118 9.55e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027410.01.T01 AT1G68530 85.060 415 62 0 1 415 83 497 0.0 761
MsG0580027410.01.T01 AT1G25450 82.892 415 71 0 1 415 78 492 0.0 752
MsG0580027410.01.T01 AT1G19440 68.059 407 130 0 1 407 106 512 0.0 615
MsG0580027410.01.T01 AT2G16280 68.460 409 129 0 1 409 102 510 0.0 613
MsG0580027410.01.T01 AT4G34510 65.122 410 142 1 1 409 76 485 0.0 578
MsG0580027410.01.T01 AT2G26640 62.228 413 155 1 1 412 94 506 0.0 551
MsG0580027410.01.T01 AT1G04220 62.500 416 148 3 3 410 101 516 0.0 548
MsG0580027410.01.T01 AT5G43760 63.007 419 146 4 3 413 107 524 0.0 543
MsG0580027410.01.T01 AT1G01120 60.827 411 159 1 3 411 118 528 0.0 542
MsG0580027410.01.T01 AT2G15090 57.554 417 169 2 1 409 63 479 0.0 520
MsG0580027410.01.T01 AT4G34520 56.699 418 170 2 3 409 73 490 4.47e-179 509
MsG0580027410.01.T01 AT2G26250 54.713 435 168 3 1 407 115 548 1.50e-176 504
MsG0580027410.01.T01 AT4G34250 55.904 415 177 1 1 409 73 487 1.81e-175 499
MsG0580027410.01.T01 AT2G46720 53.902 410 186 1 3 409 56 465 2.00e-174 496
MsG0580027410.01.T01 AT1G68530 78.521 284 55 1 1 284 83 360 2.83e-167 474
MsG0580027410.01.T01 AT3G10280 52.439 410 185 2 3 409 56 458 2.85e-166 474
MsG0580027410.01.T01 AT1G71160 51.225 408 197 2 1 407 40 446 1.05e-160 461
MsG0580027410.01.T01 AT5G49070 52.311 411 186 2 7 411 51 457 4.29e-153 441
MsG0580027410.01.T01 AT3G52160 45.729 398 184 3 2 398 83 449 4.33e-130 382
MsG0580027410.01.T01 AT3G52160 47.922 361 156 3 39 398 7 336 1.56e-123 361
MsG0580027410.01.T01 AT2G28630 42.080 423 223 8 3 406 27 446 2.29e-111 335
MsG0580027410.01.T01 AT2G28630 42.080 423 223 8 3 406 27 446 2.29e-111 335
MsG0580027410.01.T01 AT5G04530 40.777 412 229 6 5 406 31 437 2.72e-108 327
MsG0580027410.01.T01 AT1G07720 40.811 419 225 6 8 406 32 447 1.32e-107 326
MsG0580027410.01.T01 AT1G07720 40.811 419 225 6 8 406 75 490 3.33e-107 326
MsG0580027410.01.T01 AT5G49070 50.190 263 131 0 7 269 51 313 2.13e-88 271

Find 80 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACGTCTTCTTCATCTTTA+TGG 0.130721 5:-60021453 MsG0580027410.01.T01:CDS
CGTCCCTTTCGCTACTTTCA+TGG 0.215185 5:-60022415 MsG0580027410.01.T01:CDS
TTCACTTCAAAAGGATCTTA+TGG 0.218445 5:-60021746 MsG0580027410.01.T01:CDS
AGGACCAATAGTTGTTATAT+TGG 0.251699 5:+60021699 None:intergenic
CGTCTTGCTTCTTCCATTGT+TGG 0.258187 5:+60022267 None:intergenic
GCTTCTTCCATTGTTGGTTT+AGG 0.276327 5:+60022273 None:intergenic
TGAAGAGAGGTGATAGAGTA+TGG 0.287194 5:-60021396 MsG0580027410.01.T01:CDS
AGCATTAAGACACCTGTTAA+TGG 0.300750 5:-60021316 MsG0580027410.01.T01:CDS
TGTTTGAAATCAGGAATATA+AGG 0.323168 5:+60021598 None:intergenic
TTTAGCCCGCGATCTTCTTC+AGG 0.324454 5:-60022028 MsG0580027410.01.T01:CDS
GGTGGGATGTAATGGATTGC+TGG 0.333428 5:+60022294 None:intergenic
GAAGACAGAGAAGGTAAAGT+TGG 0.348142 5:-60021772 MsG0580027410.01.T01:CDS
GAATGACGCTGCATCGATTC+GGG 0.353166 5:-60021477 MsG0580027410.01.T01:CDS
ACAACAACTGCGTTTGAATT+CGG 0.360073 5:+60022000 None:intergenic
AGAGTATGGCAAATAGCTTT+TGG 0.363430 5:-60021382 MsG0580027410.01.T01:CDS
AGCTTCAACCTCTCCGGAAT+GGG 0.368697 5:-60022078 MsG0580027410.01.T01:CDS
ACCAAACTGTTTATTCAGAA+TGG 0.377309 5:-60021920 MsG0580027410.01.T01:CDS
ATTCTCGAACGCTCTGGTCT+TGG 0.385049 5:-60022336 MsG0580027410.01.T01:CDS
AAATCCAATATAACAACTAT+TGG 0.388103 5:-60021703 MsG0580027410.01.T01:CDS
AGCGTTCGAGAATTCTCATT+TGG 0.392840 5:+60022346 None:intergenic
AACTCCTTCTTTGTCTGCTA+TGG 0.395630 5:-60022136 MsG0580027410.01.T01:CDS
AGTTGGAATTTCACTTCAAA+AGG 0.400364 5:-60021755 MsG0580027410.01.T01:CDS
TCTTCCCAAGGTCCATTAAC+AGG 0.401821 5:+60021304 None:intergenic
TCAAACGCTTGTTTGAAATC+AGG 0.404416 5:+60021589 None:intergenic
TCTTCCATTGTTGGTTTAGG+TGG 0.408011 5:+60022276 None:intergenic
CCCATTCTGAATAAACAGTT+TGG 0.412390 5:+60021919 None:intergenic
ATAAGAATGTCTATGTCCTT+AGG 0.415605 5:+60022183 None:intergenic
AGAATGACGCTGCATCGATT+CGG 0.416495 5:-60021478 MsG0580027410.01.T01:CDS
GATACCTTGTTTGCGAAAAC+CGG 0.424265 5:-60022213 MsG0580027410.01.T01:CDS
TTGGTTTAGGTGGGATGTAA+TGG 0.427468 5:+60022286 None:intergenic
CCAAACTGTTTATTCAGAAT+GGG 0.431991 5:-60021919 MsG0580027410.01.T01:CDS
ATTTAGAGCTTAACAATCTC+AGG 0.432547 5:+60021253 None:intergenic
CTTCCATTGTTGGTTTAGGT+GGG 0.436694 5:+60022277 None:intergenic
AAAGGGACGCGGCAAGTAAT+CGG 0.440585 5:+60022429 None:intergenic
TTGAACTATATTGAATCAAA+AGG 0.463579 5:-60021424 MsG0580027410.01.T01:CDS
GACACCTGTTAATGGACCTT+GGG 0.463994 5:-60021308 MsG0580027410.01.T01:CDS
ACAATCTCAGGAATATGAAC+AGG 0.469213 5:+60021265 None:intergenic
ACCCGCGCTACATCCCATTC+CGG 0.483459 5:+60022065 None:intergenic
GCTTGTTATCTTCTCATCCA+TGG 0.488002 5:-60022235 MsG0580027410.01.T01:CDS
AAGAGTAGTTGTTCTGAAGC+AGG 0.493059 5:+60021667 None:intergenic
ATCAAGAGCTTCAACCTCTC+CGG 0.495473 5:-60022084 MsG0580027410.01.T01:CDS
GAGCTTCAACCTCTCCGGAA+TGG 0.499688 5:-60022079 MsG0580027410.01.T01:CDS
TATGTCCTTAGGTTTGAGTC+CGG 0.505098 5:+60022194 None:intergenic
AGACACCTGTTAATGGACCT+TGG 0.510300 5:-60021309 MsG0580027410.01.T01:CDS
ATGAGAATTCTCGAACGCTC+TGG 0.512522 5:-60022342 MsG0580027410.01.T01:CDS
TCCGGAATGGGATGTAGCGC+GGG 0.514072 5:-60022066 MsG0580027410.01.T01:CDS
AGTAATCGGTGGTTTGAAGC+AGG 0.518013 5:+60022443 None:intergenic
AAGGATCTTATGGCTATAGC+AGG 0.535171 5:-60021736 MsG0580027410.01.T01:CDS
CTCCGGAATGGGATGTAGCG+CGG 0.535668 5:-60022067 MsG0580027410.01.T01:CDS
TTTCGCAAACAAGGTATCCA+TGG 0.546419 5:+60022218 None:intergenic
AAGAAGGAGTTGGAGAAAAG+AGG 0.546500 5:+60022148 None:intergenic
ATAGCAGACAAAGAAGGAGT+TGG 0.559010 5:+60022138 None:intergenic
CATCCCACCTAAACCAACAA+TGG 0.566152 5:-60022280 MsG0580027410.01.T01:CDS
AAGATCGCGGGCTAAATCGA+TGG 0.572509 5:+60022035 None:intergenic
TCAAAAGGAAGGATGAAGAG+AGG 0.574451 5:-60021409 MsG0580027410.01.T01:CDS
ATTACTCCAAACTATTACCA+AGG 0.582645 5:-60021964 MsG0580027410.01.T01:CDS
GTTCCATGAAAGTAGCGAAA+GGG 0.584347 5:+60022412 None:intergenic
TGAAAGTAGCGAAAGGGACG+CGG 0.588590 5:+60022418 None:intergenic
TTCGAAGAAGAAGACAGAGA+AGG 0.591426 5:-60021781 MsG0580027410.01.T01:CDS
ACTATATTGAATCAAAAGGA+AGG 0.597855 5:-60021420 MsG0580027410.01.T01:CDS
CTTCTGTAACTCATCGATCA+CGG 0.605553 5:+60021537 None:intergenic
ATCACCATAGCAGACAAAGA+AGG 0.610156 5:+60022132 None:intergenic
ATAAACCTGAAGAAGATCGC+GGG 0.612944 5:+60022023 None:intergenic
AACTGTTTATTCAGAATGGG+TGG 0.613269 5:-60021916 MsG0580027410.01.T01:CDS
GGATGAGAAGATAACAAGCT+CGG 0.613593 5:+60022239 None:intergenic
TGTTCCATGAAAGTAGCGAA+AGG 0.619184 5:+60022411 None:intergenic
CTTCTTCTTCGAAAACGCAA+CGG 0.633833 5:+60021791 None:intergenic
GAAAACCGGACTCAAACCTA+AGG 0.634039 5:-60022199 MsG0580027410.01.T01:CDS
TGAAGCAGGCATAATCGACT+AGG 0.636758 5:+60022457 None:intergenic
TCTGAAGCAGGTAGAACAAG+AGG 0.638656 5:+60021679 None:intergenic
CGATCAATGCAATCTTCCCA+AGG 0.642968 5:+60021292 None:intergenic
GCTATCTGCTGAACATGTCG+AGG 0.645995 5:-60021506 MsG0580027410.01.T01:CDS
CGCTACATCCCATTCCGGAG+AGG 0.648049 5:+60022070 None:intergenic
CAAGTTGTTAGAACTCACAA+AGG 0.665486 5:-60021832 MsG0580027410.01.T01:CDS
GATAAACCTGAAGAAGATCG+CGG 0.670461 5:+60022022 None:intergenic
TCGACTAGGTAGATTGCGCG+TGG 0.676158 5:+60022471 None:intergenic
GTTGTTAGAACTCACAAAGG+AGG 0.692073 5:-60021829 MsG0580027410.01.T01:CDS
GGGACGCGGCAAGTAATCGG+TGG 0.693695 5:+60022432 None:intergenic
GGGATGTAATGGATTGCTGG+TGG 0.704587 5:+60022297 None:intergenic
TTAAATGCAATAGTGCTGTG+TGG 0.711523 5:-60021351 MsG0580027410.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCCAATATAACAACTAT+TGG - Chr5:60022032-60022051 MsG0580027410.01.T01:CDS 20.0%
!! TTGAACTATATTGAATCAAA+AGG - Chr5:60022311-60022330 MsG0580027410.01.T01:CDS 20.0%
! ACTATATTGAATCAAAAGGA+AGG - Chr5:60022315-60022334 MsG0580027410.01.T01:CDS 25.0%
!! TGTTTGAAATCAGGAATATA+AGG + Chr5:60022140-60022159 None:intergenic 25.0%
ACCAAACTGTTTATTCAGAA+TGG - Chr5:60021815-60021834 MsG0580027410.01.T01:CDS 30.0%
AGGACCAATAGTTGTTATAT+TGG + Chr5:60022039-60022058 None:intergenic 30.0%
AGTTGGAATTTCACTTCAAA+AGG - Chr5:60021980-60021999 MsG0580027410.01.T01:CDS 30.0%
ATAAGAATGTCTATGTCCTT+AGG + Chr5:60021555-60021574 None:intergenic 30.0%
ATTACTCCAAACTATTACCA+AGG - Chr5:60021771-60021790 MsG0580027410.01.T01:CDS 30.0%
CCAAACTGTTTATTCAGAAT+GGG - Chr5:60021816-60021835 MsG0580027410.01.T01:CDS 30.0%
TTCACTTCAAAAGGATCTTA+TGG - Chr5:60021989-60022008 MsG0580027410.01.T01:CDS 30.0%
! GGAATATAAGGCTTCATTTT+AGG + Chr5:60022128-60022147 None:intergenic 30.0%
!! TCTTTTCCTTGGTAATAGTT+TGG + Chr5:60021780-60021799 None:intergenic 30.0%
AACTGTTTATTCAGAATGGG+TGG - Chr5:60021819-60021838 MsG0580027410.01.T01:CDS 35.0%
ACAACAACTGCGTTTGAATT+CGG + Chr5:60021738-60021757 None:intergenic 35.0%
ACAATCTCAGGAATATGAAC+AGG + Chr5:60022473-60022492 None:intergenic 35.0%
ACACGTCTTCTTCATCTTTA+TGG - Chr5:60022282-60022301 MsG0580027410.01.T01:CDS 35.0%
AGCATTAAGACACCTGTTAA+TGG - Chr5:60022419-60022438 MsG0580027410.01.T01:CDS 35.0%
CAAGTTGTTAGAACTCACAA+AGG - Chr5:60021903-60021922 MsG0580027410.01.T01:CDS 35.0%
CCCATTCTGAATAAACAGTT+TGG + Chr5:60021819-60021838 None:intergenic 35.0%
TTAAATGCAATAGTGCTGTG+TGG - Chr5:60022384-60022403 MsG0580027410.01.T01:CDS 35.0%
! AGAGTATGGCAAATAGCTTT+TGG - Chr5:60022353-60022372 MsG0580027410.01.T01:CDS 35.0%
! CATTTTTGTATTCATGCTGG+TGG - Chr5:60022170-60022189 MsG0580027410.01.T01:CDS 35.0%
! CTCTTTCTTTTCACACTCAT+TGG - Chr5:60022086-60022105 MsG0580027410.01.T01:CDS 35.0%
! GAGCATTTTTGTATTCATGC+TGG - Chr5:60022167-60022186 MsG0580027410.01.T01:CDS 35.0%
! TCAAACGCTTGTTTGAAATC+AGG + Chr5:60022149-60022168 None:intergenic 35.0%
!! ATTTGGAACTCAACGCTTTT+CGG + Chr5:60021375-60021394 None:intergenic 35.0%
AACTCCTTCTTTGTCTGCTA+TGG - Chr5:60021599-60021618 MsG0580027410.01.T01:CDS 40.0%
AAGAAGGAGTTGGAGAAAAG+AGG + Chr5:60021590-60021609 None:intergenic 40.0%
AAGGATCTTATGGCTATAGC+AGG - Chr5:60021999-60022018 MsG0580027410.01.T01:CDS 40.0%
AGCGTTCGAGAATTCTCATT+TGG + Chr5:60021392-60021411 None:intergenic 40.0%
ATAAACCTGAAGAAGATCGC+GGG + Chr5:60021715-60021734 None:intergenic 40.0%
ATAGCAGACAAAGAAGGAGT+TGG + Chr5:60021600-60021619 None:intergenic 40.0%
ATCACCATAGCAGACAAAGA+AGG + Chr5:60021606-60021625 None:intergenic 40.0%
CTTCTGTAACTCATCGATCA+CGG + Chr5:60022201-60022220 None:intergenic 40.0%
CTTCTTCTTCGAAAACGCAA+CGG + Chr5:60021947-60021966 None:intergenic 40.0%
GAAGACAGAGAAGGTAAAGT+TGG - Chr5:60021963-60021982 MsG0580027410.01.T01:CDS 40.0%
GATAAACCTGAAGAAGATCG+CGG + Chr5:60021716-60021735 None:intergenic 40.0%
GGATGAGAAGATAACAAGCT+CGG + Chr5:60021499-60021518 None:intergenic 40.0%
GTTCCATGAAAGTAGCGAAA+GGG + Chr5:60021326-60021345 None:intergenic 40.0%
GTTGTTAGAACTCACAAAGG+AGG - Chr5:60021906-60021925 MsG0580027410.01.T01:CDS 40.0%
TATGTCCTTAGGTTTGAGTC+CGG + Chr5:60021544-60021563 None:intergenic 40.0%
TCAAAAGGAAGGATGAAGAG+AGG - Chr5:60022326-60022345 MsG0580027410.01.T01:CDS 40.0%
TGAAGAGAGGTGATAGAGTA+TGG - Chr5:60022339-60022358 MsG0580027410.01.T01:CDS 40.0%
TGTTCCATGAAAGTAGCGAA+AGG + Chr5:60021327-60021346 None:intergenic 40.0%
TTCGAAGAAGAAGACAGAGA+AGG - Chr5:60021954-60021973 MsG0580027410.01.T01:CDS 40.0%
TTGGTTTAGGTGGGATGTAA+TGG + Chr5:60021452-60021471 None:intergenic 40.0%
! GATACCTTGTTTGCGAAAAC+CGG - Chr5:60021522-60021541 MsG0580027410.01.T01:CDS 40.0%
! GCATTGCTCTTTCTTTTCCT+TGG + Chr5:60021791-60021810 None:intergenic 40.0%
! TTTCGCAAACAAGGTATCCA+TGG + Chr5:60021520-60021539 None:intergenic 40.0%
!! AAGAGTAGTTGTTCTGAAGC+AGG + Chr5:60022071-60022090 None:intergenic 40.0%
!! CTTCCATTGTTGGTTTAGGT+GGG + Chr5:60021461-60021480 None:intergenic 40.0%
!! GCTTCTTCCATTGTTGGTTT+AGG + Chr5:60021465-60021484 None:intergenic 40.0%
!! GCTTGTTATCTTCTCATCCA+TGG - Chr5:60021500-60021519 MsG0580027410.01.T01:CDS 40.0%
!! TCTTCCATTGTTGGTTTAGG+TGG + Chr5:60021462-60021481 None:intergenic 40.0%
!! TGGCAAATAGCTTTTGGAAG+TGG - Chr5:60022359-60022378 MsG0580027410.01.T01:CDS 40.0%
!! TTTGGAACTCAACGCTTTTC+GGG + Chr5:60021374-60021393 None:intergenic 40.0%
ATCAAGAGCTTCAACCTCTC+CGG - Chr5:60021651-60021670 MsG0580027410.01.T01:CDS 45.0%
ATGAGAATTCTCGAACGCTC+TGG - Chr5:60021393-60021412 MsG0580027410.01.T01:CDS 45.0%
CATCCCACCTAAACCAACAA+TGG - Chr5:60021455-60021474 MsG0580027410.01.T01:CDS 45.0%
CGATCAATGCAATCTTCCCA+AGG + Chr5:60022446-60022465 None:intergenic 45.0%
CGTCTTGCTTCTTCCATTGT+TGG + Chr5:60021471-60021490 None:intergenic 45.0%
GAAAACCGGACTCAAACCTA+AGG - Chr5:60021536-60021555 MsG0580027410.01.T01:CDS 45.0%
TCTTCCCAAGGTCCATTAAC+AGG + Chr5:60022434-60022453 None:intergenic 45.0%
TGAAGCAGGCATAATCGACT+AGG + Chr5:60021281-60021300 None:intergenic 45.0%
! AGACACCTGTTAATGGACCT+TGG - Chr5:60022426-60022445 MsG0580027410.01.T01:CDS 45.0%
! AGTAATCGGTGGTTTGAAGC+AGG + Chr5:60021295-60021314 None:intergenic 45.0%
! GACACCTGTTAATGGACCTT+GGG - Chr5:60022427-60022446 MsG0580027410.01.T01:CDS 45.0%
! TCTGAAGCAGGTAGAACAAG+AGG + Chr5:60022059-60022078 None:intergenic 45.0%
!! AGAATGACGCTGCATCGATT+CGG - Chr5:60022257-60022276 MsG0580027410.01.T01:CDS 45.0%
AAAGGGACGCGGCAAGTAAT+CGG + Chr5:60021309-60021328 None:intergenic 50.0%
AGCTTCAACCTCTCCGGAAT+GGG - Chr5:60021657-60021676 MsG0580027410.01.T01:CDS 50.0%
ATTCTCGAACGCTCTGGTCT+TGG - Chr5:60021399-60021418 MsG0580027410.01.T01:CDS 50.0%
GCTATCTGCTGAACATGTCG+AGG - Chr5:60022229-60022248 MsG0580027410.01.T01:CDS 50.0%
TGAAAGTAGCGAAAGGGACG+CGG + Chr5:60021320-60021339 None:intergenic 50.0%
TTTAGCCCGCGATCTTCTTC+AGG - Chr5:60021707-60021726 MsG0580027410.01.T01:CDS 50.0%
! AAGATCGCGGGCTAAATCGA+TGG + Chr5:60021703-60021722 None:intergenic 50.0%
! CGTCCCTTTCGCTACTTTCA+TGG - Chr5:60021320-60021339 MsG0580027410.01.T01:CDS 50.0%
! GAGTCCGGTTTTCGCAAACA+AGG + Chr5:60021529-60021548 None:intergenic 50.0%
!! GAATGACGCTGCATCGATTC+GGG - Chr5:60022258-60022277 MsG0580027410.01.T01:CDS 50.0%
!! GGGATGTAATGGATTGCTGG+TGG + Chr5:60021441-60021460 None:intergenic 50.0%
!! GGTGGGATGTAATGGATTGC+TGG + Chr5:60021444-60021463 None:intergenic 50.0%
!!! CGCTTTTCGGGTTGTTCTTG+AGG + Chr5:60021362-60021381 None:intergenic 50.0%
GAGCTTCAACCTCTCCGGAA+TGG - Chr5:60021656-60021675 MsG0580027410.01.T01:CDS 55.0%
TCGACTAGGTAGATTGCGCG+TGG + Chr5:60021267-60021286 None:intergenic 55.0%
ACCCGCGCTACATCCCATTC+CGG + Chr5:60021673-60021692 None:intergenic 60.0%
CGCTACATCCCATTCCGGAG+AGG + Chr5:60021668-60021687 None:intergenic 60.0%
CTCCGGAATGGGATGTAGCG+CGG - Chr5:60021668-60021687 MsG0580027410.01.T01:CDS 60.0%
TCCGGAATGGGATGTAGCGC+GGG - Chr5:60021669-60021688 MsG0580027410.01.T01:CDS 60.0%
GGGACGCGGCAAGTAATCGG+TGG + Chr5:60021306-60021325 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 60021255 60022502 60021255 ID=MsG0580027410.01;Name=MsG0580027410.01
Chr5 mRNA 60021255 60022502 60021255 ID=MsG0580027410.01.T01;Parent=MsG0580027410.01;Name=MsG0580027410.01.T01;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|415
Chr5 exon 60021255 60022502 60021255 ID=MsG0580027410.01.T01:exon:22247;Parent=MsG0580027410.01.T01
Chr5 CDS 60021255 60022502 60021255 ID=MsG0580027410.01.T01:cds;Parent=MsG0580027410.01.T01
Gene Sequence

>MsG0580027410.01.T01

ATGTTAAAGCCACGCGCAATCTACCTAGTCGATTATGCCTGCTTCAAACCACCGATTACTTGCCGCGTCCCTTTCGCTACTTTCATGGAACATTCAAGACTAATCCTCAAGAACAACCCGAAAAGCGTTGAGTTCCAAATGAGAATTCTCGAACGCTCTGGTCTTGGAGAAGAAACATGTTTGCCACCAGCAATCCATTACATCCCACCTAAACCAACAATGGAAGAAGCAAGACGCGAAGCCGAGCTTGTTATCTTCTCATCCATGGATACCTTGTTTGCGAAAACCGGACTCAAACCTAAGGACATAGACATTCTTATAGTCAATTGCAGCCTCTTTTCTCCAACTCCTTCTTTGTCTGCTATGGTGATCAACAAATACAAACTTAGAAGCAACATCAAGAGCTTCAACCTCTCCGGAATGGGATGTAGCGCGGGTTTAATCTCCATCGATTTAGCCCGCGATCTTCTTCAGGTTTATCCGAATTCAAACGCAGTTGTTGTGAGCACAGAAATCATTACTCCAAACTATTACCAAGGAAAAGAAAGAGCAATGCTTTTACCAAACTGTTTATTCAGAATGGGTGGTGCTGCTATTCTTTTATCAAACAAAAAAACAGAACACAAAAGAGCAAAATATAGATTGATGCAAGTTGTTAGAACTCACAAAGGAGGTGATGATAAAGCTTACCGTTGCGTTTTCGAAGAAGAAGACAGAGAAGGTAAAGTTGGAATTTCACTTCAAAAGGATCTTATGGCTATAGCAGGAGAAGCATTGAAATCCAATATAACAACTATTGGTCCTCTTGTTCTACCTGCTTCAGAACAACTACTCTTTCTTTTCACACTCATTGGAAAGAAAATCTTCAATCCTAAAATGAAGCCTTATATTCCTGATTTCAAACAAGCGTTTGAGCATTTTTGTATTCATGCTGGTGGACGTGCCGTGATCGATGAGTTACAGAAGAATCTTCAGCTATCTGCTGAACATGTCGAGGCTTCAAGAATGACGCTGCATCGATTCGGGAACACGTCTTCTTCATCTTTATGGTATGAATTGAACTATATTGAATCAAAAGGAAGGATGAAGAGAGGTGATAGAGTATGGCAAATAGCTTTTGGAAGTGGATTTAAATGCAATAGTGCTGTGTGGAAATGTAATAGAAGCATTAAGACACCTGTTAATGGACCTTGGGAAGATTGCATTGATCGCTATCCTGTTCATATTCCTGAGATTGTTAAGCTCTAA

Protein sequence

>MsG0580027410.01.T01

MLKPRAIYLVDYACFKPPITCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPKPTMEEARREAELVIFSSMDTLFAKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVYPNSNAVVVSTEIITPNYYQGKERAMLLPNCLFRMGGAAILLSNKKTEHKRAKYRLMQVVRTHKGGDDKAYRCVFEEEDREGKVGISLQKDLMAIAGEALKSNITTIGPLVLPASEQLLFLFTLIGKKIFNPKMKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRVWQIAFGSGFKCNSAVWKCNRSIKTPVNGPWEDCIDRYPVHIPEIVKL*