Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028168.01.T03 | AES63607.2 | 84.091 | 88 | 13 | 1 | 1 | 88 | 78 | 164 | 7.19E-47 | 157 |
MsG0580028168.01.T01 | AES63607.2 | 84.091 | 132 | 20 | 1 | 1 | 132 | 34 | 164 | 1.49E-76 | 234 |
MsG0580028168.01.T02 | AES63607.2 | 83.74 | 123 | 19 | 1 | 1 | 123 | 43 | 164 | 1.13E-69 | 216 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028168.01.T01 | P11670 | 56.818 | 132 | 56 | 1 | 1 | 132 | 29 | 159 | 9.85E-54 | 169 |
MsG0580028168.01.T02 | P11670 | 56.098 | 123 | 53 | 1 | 1 | 123 | 38 | 159 | 2.97E-49 | 157 |
MsG0580028168.01.T03 | P11670 | 54.023 | 87 | 39 | 1 | 2 | 88 | 74 | 159 | 4.67E-30 | 107 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028168.01.T01 | G7IFC9 | 84.091 | 132 | 20 | 1 | 1 | 132 | 34 | 164 | 7.09e-77 | 234 |
MsG0580028168.01.T02 | G7IFC9 | 83.740 | 123 | 19 | 1 | 1 | 123 | 43 | 164 | 5.41e-70 | 216 |
MsG0580028168.01.T03 | G7IFC9 | 84.091 | 88 | 13 | 1 | 1 | 88 | 78 | 164 | 3.43e-47 | 157 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028168.01.T03 | MTR_2g010580 | 84.091 | 88 | 13 | 1 | 1 | 88 | 78 | 164 | 8.71e-51 | 157 |
MsG0580028168.01.T03 | MTR_2g010590 | 54.023 | 87 | 40 | 0 | 2 | 88 | 73 | 159 | 4.64e-32 | 109 |
MsG0580028168.01.T03 | MTR_2g010630 | 57.471 | 87 | 37 | 0 | 2 | 88 | 79 | 165 | 9.54e-32 | 108 |
MsG0580028168.01.T03 | MTR_2g010650 | 57.647 | 85 | 35 | 1 | 4 | 88 | 82 | 165 | 1.03e-30 | 106 |
MsG0580028168.01.T03 | MTR_4g092540 | 56.818 | 88 | 36 | 2 | 2 | 88 | 73 | 159 | 1.83e-30 | 105 |
MsG0580028168.01.T03 | MTR_2g010600 | 50.000 | 88 | 43 | 1 | 2 | 88 | 75 | 162 | 9.55e-28 | 98.6 |
MsG0580028168.01.T03 | MTR_2g010610 | 50.000 | 88 | 42 | 2 | 2 | 88 | 52 | 138 | 2.29e-27 | 97.1 |
MsG0580028168.01.T03 | MTR_2g435490 | 52.273 | 88 | 41 | 1 | 2 | 88 | 77 | 164 | 6.11e-27 | 97.4 |
MsG0580028168.01.T03 | MTR_4g050762 | 48.864 | 88 | 44 | 1 | 2 | 88 | 75 | 162 | 8.68e-27 | 97.1 |
MsG0580028168.01.T03 | MTR_2g012370 | 48.864 | 88 | 44 | 1 | 2 | 88 | 75 | 162 | 8.68e-27 | 97.1 |
MsG0580028168.01.T03 | MTR_2g010640 | 50.575 | 87 | 42 | 1 | 2 | 88 | 78 | 163 | 3.94e-26 | 94.7 |
MsG0580028168.01.T03 | MTR_2g010700 | 48.810 | 84 | 43 | 0 | 5 | 88 | 85 | 168 | 1.66e-25 | 93.2 |
MsG0580028168.01.T03 | MTR_2g010690 | 50.575 | 87 | 42 | 1 | 2 | 88 | 79 | 164 | 9.64e-25 | 91.3 |
MsG0580028168.01.T03 | MTR_2g010670 | 50.575 | 87 | 42 | 1 | 2 | 88 | 79 | 164 | 5.58e-24 | 89.4 |
MsG0580028168.01.T03 | MTR_4g128770 | 47.059 | 85 | 44 | 1 | 5 | 88 | 122 | 206 | 1.44e-18 | 76.3 |
MsG0580028168.01.T03 | MTR_4g128750 | 44.944 | 89 | 47 | 2 | 2 | 88 | 85 | 173 | 4.17e-17 | 71.6 |
MsG0580028168.01.T03 | MTR_8g078770 | 40.000 | 90 | 50 | 3 | 2 | 88 | 84 | 172 | 3.27e-12 | 58.9 |
MsG0580028168.01.T03 | MTR_5g018770 | 35.616 | 73 | 45 | 1 | 18 | 88 | 113 | 185 | 7.16e-11 | 55.8 |
MsG0580028168.01.T01 | MTR_2g010580 | 84.091 | 132 | 20 | 1 | 1 | 132 | 34 | 164 | 1.80e-80 | 234 |
MsG0580028168.01.T01 | MTR_4g092540 | 58.647 | 133 | 53 | 2 | 1 | 132 | 28 | 159 | 7.02e-53 | 164 |
MsG0580028168.01.T01 | MTR_2g010590 | 53.030 | 132 | 62 | 0 | 1 | 132 | 28 | 159 | 9.42e-51 | 159 |
MsG0580028168.01.T01 | MTR_2g435490 | 51.128 | 133 | 64 | 1 | 1 | 132 | 32 | 164 | 6.76e-47 | 150 |
MsG0580028168.01.T01 | MTR_4g050762 | 48.889 | 135 | 66 | 2 | 1 | 132 | 28 | 162 | 3.37e-45 | 145 |
MsG0580028168.01.T01 | MTR_2g012370 | 48.889 | 135 | 66 | 2 | 1 | 132 | 28 | 162 | 3.37e-45 | 145 |
MsG0580028168.01.T01 | MTR_2g010600 | 48.889 | 135 | 66 | 2 | 1 | 132 | 28 | 162 | 4.38e-45 | 144 |
MsG0580028168.01.T01 | MTR_2g010650 | 53.285 | 137 | 57 | 4 | 1 | 132 | 31 | 165 | 1.90e-44 | 143 |
MsG0580028168.01.T01 | MTR_2g010630 | 50.725 | 138 | 61 | 3 | 1 | 132 | 29 | 165 | 1.28e-42 | 138 |
MsG0580028168.01.T01 | MTR_2g010610 | 45.113 | 133 | 50 | 3 | 1 | 132 | 28 | 138 | 2.45e-35 | 119 |
MsG0580028168.01.T01 | MTR_2g010640 | 45.985 | 137 | 67 | 4 | 1 | 132 | 29 | 163 | 3.51e-35 | 119 |
MsG0580028168.01.T01 | MTR_2g010690 | 45.652 | 138 | 67 | 4 | 1 | 132 | 29 | 164 | 1.28e-34 | 118 |
MsG0580028168.01.T01 | MTR_4g128750 | 48.120 | 133 | 67 | 2 | 2 | 132 | 41 | 173 | 3.25e-34 | 117 |
MsG0580028168.01.T01 | MTR_2g010700 | 43.262 | 141 | 70 | 4 | 1 | 132 | 29 | 168 | 4.32e-34 | 117 |
MsG0580028168.01.T01 | MTR_2g010670 | 45.652 | 138 | 67 | 4 | 1 | 132 | 29 | 164 | 9.70e-34 | 115 |
MsG0580028168.01.T01 | MTR_4g128770 | 42.336 | 137 | 74 | 2 | 1 | 132 | 70 | 206 | 1.84e-29 | 106 |
MsG0580028168.01.T01 | MTR_1g067290 | 35.556 | 135 | 83 | 3 | 1 | 131 | 73 | 207 | 2.73e-23 | 90.5 |
MsG0580028168.01.T01 | MTR_8g078770 | 36.691 | 139 | 79 | 6 | 1 | 132 | 36 | 172 | 3.50e-20 | 81.3 |
MsG0580028168.01.T01 | MTR_5g018770 | 33.094 | 139 | 86 | 4 | 1 | 132 | 47 | 185 | 9.85e-19 | 78.2 |
MsG0580028168.01.T01 | MTR_4g092515 | 52.542 | 59 | 28 | 0 | 1 | 59 | 32 | 90 | 1.79e-17 | 73.6 |
MsG0580028168.01.T02 | MTR_2g010580 | 83.740 | 123 | 19 | 1 | 1 | 123 | 43 | 164 | 1.37e-73 | 216 |
MsG0580028168.01.T02 | MTR_4g092540 | 57.258 | 124 | 51 | 2 | 1 | 123 | 37 | 159 | 7.28e-47 | 148 |
MsG0580028168.01.T02 | MTR_2g010590 | 52.846 | 123 | 58 | 0 | 1 | 123 | 37 | 159 | 2.20e-46 | 147 |
MsG0580028168.01.T02 | MTR_2g435490 | 50.000 | 124 | 61 | 1 | 1 | 123 | 41 | 164 | 5.49e-41 | 134 |
MsG0580028168.01.T02 | MTR_2g010600 | 48.413 | 126 | 62 | 2 | 1 | 123 | 37 | 162 | 9.68e-41 | 133 |
MsG0580028168.01.T02 | MTR_4g050762 | 48.413 | 126 | 62 | 2 | 1 | 123 | 37 | 162 | 9.97e-41 | 134 |
MsG0580028168.01.T02 | MTR_2g012370 | 48.413 | 126 | 62 | 2 | 1 | 123 | 37 | 162 | 9.97e-41 | 134 |
MsG0580028168.01.T02 | MTR_2g010650 | 56.034 | 116 | 48 | 3 | 9 | 123 | 52 | 165 | 1.99e-40 | 132 |
MsG0580028168.01.T02 | MTR_2g010630 | 52.459 | 122 | 55 | 2 | 4 | 123 | 45 | 165 | 1.19e-39 | 130 |
MsG0580028168.01.T02 | MTR_2g010640 | 48.718 | 117 | 56 | 3 | 9 | 123 | 49 | 163 | 7.61e-33 | 113 |
MsG0580028168.01.T02 | MTR_4g128750 | 48.800 | 125 | 62 | 2 | 1 | 123 | 49 | 173 | 1.24e-32 | 113 |
MsG0580028168.01.T02 | MTR_2g010690 | 46.721 | 122 | 61 | 3 | 4 | 123 | 45 | 164 | 8.69e-32 | 110 |
MsG0580028168.01.T02 | MTR_2g010610 | 50.000 | 98 | 47 | 2 | 27 | 123 | 42 | 138 | 2.55e-31 | 108 |
MsG0580028168.01.T02 | MTR_2g010700 | 45.455 | 121 | 59 | 3 | 9 | 123 | 49 | 168 | 5.42e-31 | 108 |
MsG0580028168.01.T02 | MTR_2g010670 | 47.863 | 117 | 57 | 3 | 9 | 123 | 50 | 164 | 2.10e-30 | 107 |
MsG0580028168.01.T02 | MTR_4g128770 | 44.628 | 121 | 62 | 2 | 8 | 123 | 86 | 206 | 1.17e-27 | 101 |
MsG0580028168.01.T02 | MTR_1g067290 | 35.714 | 126 | 77 | 3 | 1 | 122 | 82 | 207 | 1.68e-20 | 82.8 |
MsG0580028168.01.T02 | MTR_8g078770 | 35.385 | 130 | 75 | 6 | 1 | 123 | 45 | 172 | 3.37e-15 | 68.2 |
MsG0580028168.01.T02 | MTR_5g018770 | 31.538 | 130 | 82 | 4 | 1 | 123 | 56 | 185 | 3.15e-14 | 65.9 |
MsG0580028168.01.T02 | MTR_4g092515 | 54.000 | 50 | 23 | 0 | 1 | 50 | 41 | 90 | 4.19e-13 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028168.01.T03 | AT2G19990 | 53.933 | 89 | 40 | 1 | 1 | 88 | 88 | 176 | 5.95e-31 | 107 |
MsG0580028168.01.T03 | AT2G14580 | 49.425 | 87 | 42 | 1 | 2 | 88 | 77 | 161 | 5.79e-28 | 99.4 |
MsG0580028168.01.T03 | AT4G33720 | 50.575 | 87 | 43 | 0 | 2 | 88 | 77 | 163 | 4.81e-27 | 97.1 |
MsG0580028168.01.T03 | AT3G19690 | 48.315 | 89 | 44 | 1 | 2 | 88 | 73 | 161 | 1.35e-26 | 95.9 |
MsG0580028168.01.T03 | AT4G33710 | 48.276 | 87 | 45 | 0 | 2 | 88 | 80 | 166 | 4.80e-26 | 94.7 |
MsG0580028168.01.T03 | AT2G14610 | 48.276 | 87 | 43 | 1 | 2 | 88 | 77 | 161 | 9.66e-26 | 93.6 |
MsG0580028168.01.T03 | AT4G33730 | 49.425 | 87 | 43 | 1 | 2 | 88 | 87 | 172 | 3.23e-25 | 92.8 |
MsG0580028168.01.T03 | AT5G26130 | 49.425 | 87 | 44 | 0 | 2 | 88 | 80 | 166 | 4.30e-25 | 92.0 |
MsG0580028168.01.T03 | AT1G50060 | 47.727 | 88 | 45 | 1 | 2 | 88 | 74 | 161 | 7.22e-23 | 86.3 |
MsG0580028168.01.T03 | AT1G50050 | 45.455 | 88 | 47 | 1 | 2 | 88 | 75 | 162 | 7.26e-22 | 84.0 |
MsG0580028168.01.T03 | AT4G31470 | 45.455 | 88 | 47 | 1 | 2 | 88 | 98 | 185 | 8.32e-21 | 81.6 |
MsG0580028168.01.T03 | AT4G25780 | 49.412 | 85 | 42 | 1 | 5 | 88 | 106 | 190 | 1.05e-20 | 81.6 |
MsG0580028168.01.T03 | AT2G19970 | 41.935 | 93 | 46 | 4 | 2 | 88 | 87 | 177 | 5.89e-20 | 79.3 |
MsG0580028168.01.T03 | AT1G01310 | 45.455 | 88 | 47 | 1 | 2 | 88 | 132 | 219 | 9.82e-20 | 80.1 |
MsG0580028168.01.T03 | AT4G25790 | 46.067 | 89 | 46 | 2 | 2 | 88 | 122 | 210 | 1.34e-19 | 79.0 |
MsG0580028168.01.T03 | AT4G30320 | 48.315 | 89 | 43 | 3 | 2 | 88 | 74 | 161 | 1.59e-19 | 77.8 |
MsG0580028168.01.T03 | AT5G02730 | 47.778 | 90 | 44 | 2 | 2 | 88 | 104 | 193 | 1.63e-19 | 79.0 |
MsG0580028168.01.T03 | AT2G19980 | 44.086 | 93 | 44 | 4 | 2 | 88 | 75 | 165 | 1.70e-19 | 77.8 |
MsG0580028168.01.T03 | AT5G57625 | 44.944 | 89 | 47 | 2 | 2 | 88 | 119 | 207 | 3.24e-19 | 78.2 |
MsG0580028168.01.T03 | AT3G09590 | 44.444 | 90 | 47 | 2 | 2 | 88 | 97 | 186 | 1.58e-18 | 75.9 |
MsG0580028168.01.T03 | AT5G66590 | 43.333 | 90 | 48 | 2 | 2 | 88 | 96 | 185 | 2.76e-18 | 75.1 |
MsG0580028168.01.T03 | AT4G07820 | 41.379 | 87 | 50 | 1 | 2 | 88 | 75 | 160 | 4.18e-18 | 73.9 |
MsG0580028168.01.T03 | AT1G50050 | 39.535 | 86 | 51 | 1 | 2 | 86 | 75 | 160 | 9.86e-18 | 74.7 |
MsG0580028168.01.T01 | AT2G19990 | 55.725 | 131 | 57 | 1 | 3 | 132 | 46 | 176 | 4.68e-52 | 162 |
MsG0580028168.01.T01 | AT4G33720 | 53.788 | 132 | 61 | 0 | 1 | 132 | 32 | 163 | 4.83e-50 | 157 |
MsG0580028168.01.T01 | AT2G14580 | 51.515 | 132 | 62 | 1 | 1 | 132 | 32 | 161 | 2.47e-49 | 155 |
MsG0580028168.01.T01 | AT3G19690 | 51.880 | 133 | 62 | 1 | 2 | 132 | 29 | 161 | 4.62e-48 | 152 |
MsG0580028168.01.T01 | AT2G14610 | 50.000 | 132 | 64 | 1 | 1 | 132 | 32 | 161 | 5.98e-45 | 144 |
MsG0580028168.01.T01 | AT5G26130 | 50.000 | 134 | 65 | 1 | 1 | 132 | 33 | 166 | 6.87e-42 | 136 |
MsG0580028168.01.T01 | AT1G50060 | 50.376 | 133 | 65 | 1 | 1 | 132 | 29 | 161 | 8.49e-41 | 134 |
MsG0580028168.01.T01 | AT4G33710 | 47.761 | 134 | 68 | 1 | 1 | 132 | 33 | 166 | 1.68e-40 | 133 |
MsG0580028168.01.T01 | AT4G33730 | 48.485 | 132 | 66 | 2 | 2 | 132 | 42 | 172 | 6.81e-39 | 129 |
MsG0580028168.01.T01 | AT4G07820 | 46.970 | 132 | 68 | 2 | 1 | 132 | 31 | 160 | 5.02e-36 | 121 |
MsG0580028168.01.T01 | AT1G01310 | 45.113 | 133 | 72 | 1 | 1 | 132 | 87 | 219 | 6.58e-36 | 123 |
MsG0580028168.01.T01 | AT2G19970 | 43.262 | 141 | 67 | 5 | 3 | 132 | 39 | 177 | 2.96e-35 | 120 |
MsG0580028168.01.T01 | AT4G31470 | 43.182 | 132 | 74 | 1 | 2 | 132 | 54 | 185 | 1.23e-34 | 119 |
MsG0580028168.01.T01 | AT5G57625 | 44.361 | 133 | 72 | 2 | 2 | 132 | 75 | 207 | 3.68e-34 | 118 |
MsG0580028168.01.T01 | AT4G25790 | 44.030 | 134 | 73 | 2 | 1 | 132 | 77 | 210 | 6.19e-34 | 117 |
MsG0580028168.01.T01 | AT4G30320 | 45.522 | 134 | 70 | 3 | 1 | 132 | 29 | 161 | 4.85e-33 | 114 |
MsG0580028168.01.T01 | AT5G02730 | 43.704 | 135 | 73 | 2 | 1 | 132 | 59 | 193 | 1.89e-32 | 114 |
MsG0580028168.01.T01 | AT3G09590 | 42.222 | 135 | 75 | 2 | 1 | 132 | 52 | 186 | 2.31e-32 | 113 |
MsG0580028168.01.T01 | AT4G25780 | 45.588 | 136 | 69 | 3 | 2 | 132 | 55 | 190 | 4.91e-32 | 112 |
MsG0580028168.01.T01 | AT1G50050 | 47.015 | 134 | 69 | 2 | 1 | 132 | 29 | 162 | 5.33e-31 | 108 |
MsG0580028168.01.T01 | AT5G66590 | 41.606 | 137 | 74 | 3 | 2 | 132 | 49 | 185 | 1.15e-28 | 103 |
MsG0580028168.01.T01 | AT2G19980 | 42.336 | 137 | 62 | 6 | 3 | 132 | 39 | 165 | 4.61e-28 | 101 |
MsG0580028168.01.T01 | AT1G50050 | 43.182 | 132 | 73 | 2 | 1 | 130 | 29 | 160 | 9.50e-27 | 99.8 |
MsG0580028168.01.T02 | AT2G19990 | 54.839 | 124 | 55 | 1 | 1 | 123 | 53 | 176 | 2.88e-48 | 152 |
MsG0580028168.01.T02 | AT4G33720 | 52.846 | 123 | 58 | 0 | 1 | 123 | 41 | 163 | 1.14e-44 | 143 |
MsG0580028168.01.T02 | AT2G14580 | 50.407 | 123 | 59 | 1 | 1 | 123 | 41 | 161 | 4.63e-44 | 141 |
MsG0580028168.01.T02 | AT3G19690 | 51.200 | 125 | 59 | 1 | 1 | 123 | 37 | 161 | 2.11e-43 | 140 |
MsG0580028168.01.T02 | AT2G14610 | 47.154 | 123 | 63 | 1 | 1 | 123 | 41 | 161 | 2.65e-38 | 127 |
MsG0580028168.01.T02 | AT5G26130 | 48.800 | 125 | 62 | 1 | 1 | 123 | 42 | 166 | 9.38e-37 | 123 |
MsG0580028168.01.T02 | AT1G50060 | 49.194 | 124 | 62 | 1 | 1 | 123 | 38 | 161 | 3.35e-36 | 121 |
MsG0580028168.01.T02 | AT4G33730 | 47.581 | 124 | 63 | 2 | 1 | 123 | 50 | 172 | 3.04e-35 | 119 |
MsG0580028168.01.T02 | AT4G33710 | 45.600 | 125 | 66 | 1 | 1 | 123 | 42 | 166 | 1.65e-34 | 117 |
MsG0580028168.01.T02 | AT1G01310 | 45.968 | 124 | 66 | 1 | 1 | 123 | 96 | 219 | 3.20e-33 | 116 |
MsG0580028168.01.T02 | AT4G31470 | 43.548 | 124 | 69 | 1 | 1 | 123 | 62 | 185 | 4.72e-32 | 112 |
MsG0580028168.01.T02 | AT4G07820 | 46.341 | 123 | 64 | 2 | 1 | 123 | 40 | 160 | 2.23e-31 | 109 |
MsG0580028168.01.T02 | AT4G30320 | 47.200 | 125 | 63 | 3 | 1 | 123 | 38 | 161 | 2.61e-31 | 109 |
MsG0580028168.01.T02 | AT2G19970 | 41.791 | 134 | 65 | 5 | 1 | 123 | 46 | 177 | 3.03e-31 | 109 |
MsG0580028168.01.T02 | AT5G57625 | 44.800 | 125 | 67 | 2 | 1 | 123 | 83 | 207 | 4.08e-31 | 110 |
MsG0580028168.01.T02 | AT4G25790 | 44.800 | 125 | 67 | 2 | 1 | 123 | 86 | 210 | 8.58e-31 | 109 |
MsG0580028168.01.T02 | AT4G25780 | 47.107 | 121 | 59 | 2 | 8 | 123 | 70 | 190 | 1.42e-30 | 108 |
MsG0580028168.01.T02 | AT5G02730 | 43.651 | 126 | 68 | 2 | 1 | 123 | 68 | 193 | 8.39e-29 | 104 |
MsG0580028168.01.T02 | AT3G09590 | 42.063 | 126 | 70 | 2 | 1 | 123 | 61 | 186 | 4.36e-28 | 101 |
MsG0580028168.01.T02 | AT2G19980 | 43.697 | 119 | 58 | 5 | 12 | 123 | 49 | 165 | 2.78e-26 | 96.7 |
MsG0580028168.01.T02 | AT1G50050 | 45.600 | 125 | 66 | 2 | 1 | 123 | 38 | 162 | 3.97e-26 | 96.3 |
MsG0580028168.01.T02 | AT5G66590 | 41.860 | 129 | 69 | 3 | 1 | 123 | 57 | 185 | 2.12e-25 | 94.7 |
MsG0580028168.01.T02 | AT1G50050 | 41.463 | 123 | 70 | 2 | 1 | 121 | 38 | 160 | 7.11e-22 | 86.7 |
Find 34 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGTGTTGGTCCACTTTCT+TGG | 0.232057 | 5:+76047688 | MsG0580028168.01.T01:CDS |
AACCCAACCATTCTTACATT+TGG | 0.275936 | 5:-76047970 | None:intergenic |
TTAGAGTGATAATCATAATT+AGG | 0.290359 | 5:-76047867 | None:intergenic |
TTGTGAGCTTGAGCACTCTA+TGG | 0.304876 | 5:+76047764 | MsG0580028168.01.T01:CDS |
GTACGGATTCAGTGAAGTTT+TGG | 0.323671 | 5:+76047832 | MsG0580028168.01.T01:CDS |
GAGCACTCTATGGGCCCTTA+TGG | 0.362773 | 5:+76047774 | MsG0580028168.01.T01:CDS |
GAGAACATTGCTTCAGGTTA+TGG | 0.364276 | 5:+76047798 | MsG0580028168.01.T01:CDS |
TTGGTGCATAGTTGAAGTTT+TGG | 0.369604 | 5:+76048056 | MsG0580028168.01.T04:CDS |
TATGGTGAGAACATTGCTTC+AGG | 0.389059 | 5:+76047792 | MsG0580028168.01.T01:CDS |
GAAGCAATGTTCTCACCATA+AGG | 0.419111 | 5:-76047789 | None:intergenic |
TGCCGTAATACTGTTCATCT+TGG | 0.432886 | 5:+76047936 | MsG0580028168.01.T01:CDS |
TGCACCAATCTCCTTCAATA+AGG | 0.444589 | 5:-76048041 | None:intergenic |
AGTCCAAATGTAAGAATGGT+TGG | 0.453283 | 5:+76047967 | MsG0580028168.01.T01:CDS |
ACGACCTTATTGAAGGAGAT+TGG | 0.459198 | 5:+76048037 | MsG0580028168.01.T04:CDS |
GTCCAAATGTAAGAATGGTT+GGG | 0.466932 | 5:+76047968 | MsG0580028168.01.T01:CDS |
AACCAAGATGAACAGTATTA+CGG | 0.481036 | 5:-76047938 | None:intergenic |
GAGCATAGGCTTCAAGGGTG+TGG | 0.483579 | 5:-76047713 | None:intergenic |
GTGCTAAAATTGTTGAGTGT+TGG | 0.491483 | 5:+76047895 | MsG0580028168.01.T01:CDS |
CGTTGTCCTTCAATATTGCC+TGG | 0.494327 | 5:-76048017 | None:intergenic |
AAGGACAACGACCTTATTGA+AGG | 0.499263 | 5:+76048030 | MsG0580028168.01.T01:CDS |
AAGCAATGTTCTCACCATAA+GGG | 0.528935 | 5:-76047788 | None:intergenic |
TGTGAGCTTGAGCACTCTAT+GGG | 0.543947 | 5:+76047765 | MsG0580028168.01.T01:CDS |
AGGGTGTGGTTCCAAGAAAG+TGG | 0.547176 | 5:-76047699 | None:intergenic |
TCACCACCAGGCAATATTGA+AGG | 0.549092 | 5:+76048011 | MsG0580028168.01.T01:CDS |
GAGCTTGATTATGTACCTCA+AGG | 0.560143 | 5:-76047656 | None:intergenic |
GCTAAGTCCAAATGTAAGAA+TGG | 0.566456 | 5:+76047963 | MsG0580028168.01.T01:CDS |
GCTCGAAAAGAGGTTGGTGT+TGG | 0.599022 | 5:+76047675 | MsG0580028168.01.T01:CDS |
ACATAATCAAGCTCGAAAAG+AGG | 0.599086 | 5:+76047665 | MsG0580028168.01.T01:CDS |
AATCAAGCTCGAAAAGAGGT+TGG | 0.601925 | 5:+76047669 | MsG0580028168.01.T01:CDS |
ATTTGTAGCTATTCACCACC+AGG | 0.611970 | 5:+76047999 | MsG0580028168.01.T01:CDS |
TTATGGTGAAACGAATGGTA+CGG | 0.614603 | 5:+76047815 | MsG0580028168.01.T01:CDS |
TCAGGTTATGGTGAAACGAA+TGG | 0.623664 | 5:+76047810 | MsG0580028168.01.T01:CDS |
CTCCCCTTAAGATTACCTTG+AGG | 0.722334 | 5:+76047641 | None:intergenic |
TGTCCTTCAATATTGCCTGG+TGG | 0.737824 | 5:-76048014 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAGAGTGATAATCATAATT+AGG | - | Chr5:76047870-76047889 | None:intergenic | 20.0% |
AACCAAGATGAACAGTATTA+CGG | - | Chr5:76047941-76047960 | None:intergenic | 30.0% | |
AACCCAACCATTCTTACATT+TGG | - | Chr5:76047973-76047992 | None:intergenic | 35.0% | |
AAGCAATGTTCTCACCATAA+GGG | - | Chr5:76047791-76047810 | None:intergenic | 35.0% | |
ACATAATCAAGCTCGAAAAG+AGG | + | Chr5:76047665-76047684 | MsG0580028168.01.T01:CDS | 35.0% | |
AGTCCAAATGTAAGAATGGT+TGG | + | Chr5:76047967-76047986 | MsG0580028168.01.T01:CDS | 35.0% | |
GCTAAGTCCAAATGTAAGAA+TGG | + | Chr5:76047963-76047982 | MsG0580028168.01.T01:CDS | 35.0% | |
GTCCAAATGTAAGAATGGTT+GGG | + | Chr5:76047968-76047987 | MsG0580028168.01.T01:CDS | 35.0% | |
GTGCTAAAATTGTTGAGTGT+TGG | + | Chr5:76047895-76047914 | MsG0580028168.01.T01:CDS | 35.0% | |
TTATGGTGAAACGAATGGTA+CGG | + | Chr5:76047815-76047834 | MsG0580028168.01.T01:CDS | 35.0% | |
! | TTGGTGCATAGTTGAAGTTT+TGG | + | Chr5:76048056-76048075 | MsG0580028168.01.T04:CDS | 35.0% |
!!! | AGTTGAAGTTTTGGATTCGT+AGG | + | Chr5:76048065-76048084 | MsG0580028168.01.T04:CDS | 35.0% |
!!! | GTTTGCATAGTTTTGAGCAT+AGG | - | Chr5:76047730-76047749 | None:intergenic | 35.0% |
AAGGACAACGACCTTATTGA+AGG | + | Chr5:76048030-76048049 | MsG0580028168.01.T01:CDS | 40.0% | |
AATCAAGCTCGAAAAGAGGT+TGG | + | Chr5:76047669-76047688 | MsG0580028168.01.T01:CDS | 40.0% | |
ACGACCTTATTGAAGGAGAT+TGG | + | Chr5:76048037-76048056 | MsG0580028168.01.T04:CDS | 40.0% | |
ATTTGTAGCTATTCACCACC+AGG | + | Chr5:76047999-76048018 | MsG0580028168.01.T01:CDS | 40.0% | |
GAAGCAATGTTCTCACCATA+AGG | - | Chr5:76047792-76047811 | None:intergenic | 40.0% | |
GAGCTTGATTATGTACCTCA+AGG | - | Chr5:76047659-76047678 | None:intergenic | 40.0% | |
TATGGTGAGAACATTGCTTC+AGG | + | Chr5:76047792-76047811 | MsG0580028168.01.T01:CDS | 40.0% | |
TCAGGTTATGGTGAAACGAA+TGG | + | Chr5:76047810-76047829 | MsG0580028168.01.T01:CDS | 40.0% | |
TGCACCAATCTCCTTCAATA+AGG | - | Chr5:76048044-76048063 | None:intergenic | 40.0% | |
TGCCGTAATACTGTTCATCT+TGG | + | Chr5:76047936-76047955 | MsG0580028168.01.T01:CDS | 40.0% | |
! | GAGAACATTGCTTCAGGTTA+TGG | + | Chr5:76047798-76047817 | MsG0580028168.01.T01:CDS | 40.0% |
! | GTACGGATTCAGTGAAGTTT+TGG | + | Chr5:76047832-76047851 | MsG0580028168.01.T01:CDS | 40.0% |
!! | GTTTTGAGCATAGGCTTCAA+GGG | - | Chr5:76047721-76047740 | None:intergenic | 40.0% |
!!! | AGTTTTGAGCATAGGCTTCA+AGG | - | Chr5:76047722-76047741 | None:intergenic | 40.0% |
CGTTGTCCTTCAATATTGCC+TGG | - | Chr5:76048020-76048039 | None:intergenic | 45.0% | |
TCACCACCAGGCAATATTGA+AGG | + | Chr5:76048011-76048030 | MsG0580028168.01.T01:CDS | 45.0% | |
TGTCCTTCAATATTGCCTGG+TGG | - | Chr5:76048017-76048036 | None:intergenic | 45.0% | |
TGTGAGCTTGAGCACTCTAT+GGG | + | Chr5:76047765-76047784 | MsG0580028168.01.T01:CDS | 45.0% | |
TTGTGAGCTTGAGCACTCTA+TGG | + | Chr5:76047764-76047783 | MsG0580028168.01.T01:CDS | 45.0% | |
!! | TTGGTGTTGGTCCACTTTCT+TGG | + | Chr5:76047688-76047707 | MsG0580028168.01.T01:CDS | 45.0% |
AGGGTGTGGTTCCAAGAAAG+TGG | - | Chr5:76047702-76047721 | None:intergenic | 50.0% | |
!! | GCTCGAAAAGAGGTTGGTGT+TGG | + | Chr5:76047675-76047694 | MsG0580028168.01.T01:CDS | 50.0% |
GAGCACTCTATGGGCCCTTA+TGG | + | Chr5:76047774-76047793 | MsG0580028168.01.T01:CDS | 55.0% | |
GAGCATAGGCTTCAAGGGTG+TGG | - | Chr5:76047716-76047735 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 76047651 | 76048086 | 76047651 | ID=MsG0580028168.01;Name=MsG0580028168.01 |
Chr5 | mRNA | 76047651 | 76048049 | 76047651 | ID=MsG0580028168.01.T01;Parent=MsG0580028168.01;Name=MsG0580028168.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|132 |
Chr5 | exon | 76047651 | 76048049 | 76047651 | ID=MsG0580028168.01.T01:exon:15499;Parent=MsG0580028168.01.T01 |
Chr5 | CDS | 76047651 | 76048049 | 76047651 | ID=MsG0580028168.01.T01:cds;Parent=MsG0580028168.01.T01 |
Chr5 | mRNA | 76047678 | 76048049 | 76047678 | ID=MsG0580028168.01.T02;Parent=MsG0580028168.01;Name=MsG0580028168.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|123 |
Chr5 | exon | 76047678 | 76048049 | 76047678 | ID=MsG0580028168.01.T02:exon:15500;Parent=MsG0580028168.01.T02 |
Chr5 | CDS | 76047678 | 76048049 | 76047678 | ID=MsG0580028168.01.T02:cds;Parent=MsG0580028168.01.T02 |
Chr5 | mRNA | 76047783 | 76048049 | 76047783 | ID=MsG0580028168.01.T03;Parent=MsG0580028168.01;Name=MsG0580028168.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|88 |
Chr5 | exon | 76047783 | 76048049 | 76047783 | ID=MsG0580028168.01.T03:exon:15501;Parent=MsG0580028168.01.T03 |
Chr5 | CDS | 76047783 | 76048049 | 76047783 | ID=MsG0580028168.01.T03:cds;Parent=MsG0580028168.01.T03 |
Chr5 | mRNA | 76047874 | 76048086 | 76047874 | ID=MsG0580028168.01.T04;Parent=MsG0580028168.01;Name=MsG0580028168.01.T04;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|70 |
Chr5 | exon | 76047874 | 76048086 | 76047874 | ID=MsG0580028168.01.T04:exon:15502;Parent=MsG0580028168.01.T04 |
Chr5 | CDS | 76047874 | 76048086 | 76047874 | ID=MsG0580028168.01.T04:cds;Parent=MsG0580028168.01.T04 |
Chr5 | mRNA | 76047982 | 76048086 | 76047982 | ID=MsG0580028168.01.T05;Parent=MsG0580028168.01;Name=MsG0580028168.01.T05;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|34 |
Chr5 | exon | 76047982 | 76048086 | 76047982 | ID=MsG0580028168.01.T05:exon:15503;Parent=MsG0580028168.01.T05 |
Chr5 | CDS | 76047982 | 76048086 | 76047982 | ID=MsG0580028168.01.T05:cds;Parent=MsG0580028168.01.T05 |
Gene Sequence |
Protein sequence |