AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006554.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006554.01.T01 MTR_2g010630 90.625 128 11 1 13 140 13 139 2.54e-84 247
MsG0280006554.01.T01 MTR_2g010650 83.803 142 18 5 1 140 1 139 9.36e-79 233
MsG0280006554.01.T01 MTR_2g010600 72.857 140 33 2 1 140 1 135 1.73e-72 217
MsG0280006554.01.T01 MTR_2g010700 70.139 144 37 3 1 140 1 142 3.47e-67 204
MsG0280006554.01.T01 MTR_2g010590 65.714 140 41 3 1 140 1 133 8.59e-64 195
MsG0280006554.01.T01 MTR_4g050762 71.429 140 35 2 1 140 1 135 3.79e-63 194
MsG0280006554.01.T01 MTR_2g012370 71.429 140 35 2 1 140 1 135 3.79e-63 194
MsG0280006554.01.T01 MTR_2g010670 65.714 140 46 2 1 140 1 138 7.80e-60 185
MsG0280006554.01.T01 MTR_2g010640 65.714 140 45 3 1 140 1 137 8.62e-60 185
MsG0280006554.01.T01 MTR_2g010690 62.857 140 50 2 1 140 1 138 2.67e-57 178
MsG0280006554.01.T01 MTR_2g010610 61.429 140 26 3 1 140 1 112 2.81e-45 147
MsG0280006554.01.T01 MTR_2g435490 50.370 135 61 2 6 140 9 137 2.80e-44 146
MsG0280006554.01.T01 MTR_2g010580 48.361 122 56 3 19 140 24 138 5.72e-38 129
MsG0280006554.01.T01 MTR_4g092540 43.885 139 60 5 4 141 13 134 1.03e-33 118
MsG0280006554.01.T01 MTR_4g128750 46.923 130 62 3 30 158 41 164 6.39e-30 108
MsG0280006554.01.T01 MTR_4g128770 48.958 96 46 2 50 142 87 182 3.44e-27 102
MsG0280006554.01.T01 MTR_4g092515 46.392 97 45 3 3 98 6 96 3.05e-21 85.5
MsG0280006554.01.T01 MTR_1g067290 35.398 113 65 4 29 139 73 179 1.72e-18 80.5
MsG0280006554.01.T01 MTR_3g103470 53.333 60 28 0 142 201 31 90 3.03e-13 63.2
MsG0280006554.01.T01 MTR_8g078770 32.520 123 75 5 29 148 36 153 2.73e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006554.01.T01 AT4G33720 52.941 136 57 3 5 140 9 137 6.46e-46 149
MsG0280006554.01.T01 AT2G14580 55.970 134 49 5 9 140 10 135 2.70e-44 145
MsG0280006554.01.T01 AT2G14610 53.731 134 52 5 9 140 10 135 2.82e-43 142
MsG0280006554.01.T01 AT5G26130 50.370 135 62 2 7 140 10 140 3.52e-41 137
MsG0280006554.01.T01 AT4G33710 54.237 118 50 1 23 140 27 140 3.47e-40 135
MsG0280006554.01.T01 AT3G19690 50.714 140 58 4 5 142 7 137 4.52e-40 134
MsG0280006554.01.T01 AT1G50060 47.742 155 64 7 1 152 1 141 2.55e-38 130
MsG0280006554.01.T01 AT4G33730 49.194 124 55 4 18 140 30 146 3.61e-32 114
MsG0280006554.01.T01 AT1G50050 44.681 141 72 3 1 140 1 136 5.13e-31 111
MsG0280006554.01.T01 AT1G50050 44.681 141 72 3 1 140 1 136 9.23e-31 112
MsG0280006554.01.T01 AT4G30320 43.182 132 64 5 12 142 15 136 5.00e-30 108
MsG0280006554.01.T01 AT2G19990 46.018 113 55 2 27 139 42 148 1.20e-29 108
MsG0280006554.01.T01 AT5G02730 47.826 115 52 3 28 140 58 166 3.17e-29 108
MsG0280006554.01.T01 AT4G25790 42.735 117 60 3 29 144 77 187 4.09e-28 105
MsG0280006554.01.T01 AT3G09590 43.860 114 56 3 29 140 52 159 8.32e-28 103
MsG0280006554.01.T01 AT5G57625 43.966 116 58 3 30 144 75 184 9.83e-28 104
MsG0280006554.01.T01 AT4G25780 40.909 132 65 4 29 157 54 175 2.38e-27 103
MsG0280006554.01.T01 AT4G07820 43.220 118 60 3 23 140 25 135 4.52e-27 101
MsG0280006554.01.T01 AT1G01310 42.857 112 57 3 29 139 87 192 3.26e-25 99.0
MsG0280006554.01.T01 AT4G31470 35.507 138 81 4 13 148 36 167 2.71e-22 89.7
MsG0280006554.01.T01 AT2G19980 40.972 144 62 6 3 138 7 135 5.30e-22 88.6
MsG0280006554.01.T01 AT2G19970 39.669 121 56 6 27 138 35 147 2.11e-18 79.3
MsG0280006554.01.T01 AT5G66590 35.075 134 68 5 30 157 49 169 1.95e-17 77.0

Find 50 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAATTTCAAATATTGTT+TGG 0.293275 2:+3393089 MsG0280006554.01.T01:CDS
TTAGGTTTAACACTCATTAT+TGG 0.301623 2:+3392983 MsG0280006554.01.T01:CDS
CCTCTTAAGACTTGTCTTGC+TGG 0.324065 2:-3395675 None:intergenic
TAAAATTTCAAATATTGTTT+GGG 0.326236 2:+3393090 MsG0280006554.01.T01:CDS
CATCGGTTACAAAACCTAAC+AGG 0.353159 2:+3395750 MsG0280006554.01.T01:CDS
TTACTACTATAATCATAGTT+TGG 0.369699 2:-3393274 None:intergenic
TTGATCCACTCCGGTGGTGG+TGG 0.379754 2:+3393172 MsG0280006554.01.T01:CDS
CGTAGTCTGCTGGTGAGTCT+TGG 0.381814 2:-3393024 None:intergenic
TTGACACGAACAGCCCTGTT+AGG 0.392527 2:-3395764 None:intergenic
GCCACTATACTCAGGTGGTT+TGG 0.400142 2:+3393323 MsG0280006554.01.T01:CDS
TCCGGTGGTGGTGGGCGTTA+CGG 0.427305 2:+3393181 MsG0280006554.01.T01:CDS
AGTAGTAACTCATGTACTAA+TGG 0.438033 2:+3393289 MsG0280006554.01.T01:CDS
GTAGTCTGCTGGTGAGTCTT+GGG 0.448748 2:-3393023 None:intergenic
AACTCTGTGGTTGTTGAACC+TGG 0.450877 2:+3395713 MsG0280006554.01.T01:CDS
TGGAGAAACACAAAGCGTAT+TGG 0.455942 2:+3393343 MsG0280006554.01.T01:CDS
TGAACCTGGTGAAGCTGGTC+AGG 0.457799 2:+3395727 MsG0280006554.01.T01:CDS
TCCGTAACGCCCACCACCAC+CGG 0.485057 2:-3393182 None:intergenic
TTAAGACTTGTCTTGCTGGT+TGG 0.487029 2:-3395671 None:intergenic
TGCCGATCTTGCATTGTTGT+GGG 0.491310 2:-3393053 None:intergenic
GTTGTTGAACCTGGTGAAGC+TGG 0.500317 2:+3395722 MsG0280006554.01.T01:CDS
CTGCCGATCTTGCATTGTTG+TGG 0.503037 2:-3393054 None:intergenic
GTGATGTCTGCAGGATGTAC+AGG 0.510209 2:+3395607 MsG0280006554.01.T01:intron
TCCAAACCACCTGAGTATAG+TGG 0.511835 2:-3393324 None:intergenic
TGCCCACAACAATGCAAGAT+CGG 0.519302 2:+3393051 MsG0280006554.01.T01:CDS
TGATCCACTCCGGTGGTGGT+GGG 0.526774 2:+3393173 MsG0280006554.01.T01:CDS
CCAGCAAGACAAGTCTTAAG+AGG 0.529738 2:+3395675 MsG0280006554.01.T01:CDS
TGGGCATTCACGTAGTCTGC+TGG 0.533658 2:-3393034 None:intergenic
CAATTGATCCACTCCGGTGG+TGG 0.548354 2:+3393169 MsG0280006554.01.T01:CDS
GCATCGAAGCAGTGAAGTTG+TGG 0.565988 2:+3393239 MsG0280006554.01.T01:CDS
TGGTGAAGCTGGTCAGGCAT+CGG 0.567629 2:+3395733 MsG0280006554.01.T01:CDS
AAGTTAAACAGCTTTAGTGT+CGG 0.582021 2:-3395798 None:intergenic
AAGCTATGCTAATCAACGCA+AGG 0.587995 2:+3393138 MsG0280006554.01.T01:CDS
CATCGAAGCAGTGAAGTTGT+GGG 0.588926 2:+3393240 MsG0280006554.01.T01:CDS
CTCTGATAGCATTAACTCTG+TGG 0.598592 2:+3395700 MsG0280006554.01.T01:CDS
AACGCCCACCACCACCGGAG+TGG 0.599839 2:-3393177 None:intergenic
GAGAGCAGCGGCGACATGAG+TGG 0.600653 2:+3393217 MsG0280006554.01.T01:CDS
GATGCCTGACCAGCTTCACC+AGG 0.611211 2:-3395731 None:intergenic
GAAAATATCGCAGAGAGCAG+CGG 0.617856 2:+3393205 MsG0280006554.01.T01:CDS
AGCTATGCTAATCAACGCAA+GGG 0.628360 2:+3393139 MsG0280006554.01.T01:CDS
TAAACAGCTTTAGTGTCGGT+AGG 0.633469 2:-3395794 None:intergenic
GATTGTCAATTGATCCACTC+CGG 0.634101 2:+3393163 MsG0280006554.01.T01:CDS
CACAGAGTTAATGCTATCAG+AGG 0.649603 2:-3395699 None:intergenic
CGAAGCAGTGAAGTTGTGGG+TGG 0.656466 2:+3393243 MsG0280006554.01.T01:CDS
ATCGGTTACAAAACCTAACA+GGG 0.660160 2:+3395751 MsG0280006554.01.T01:CDS
GTGTGGCCACTATACTCAGG+TGG 0.688606 2:+3393318 MsG0280006554.01.T01:CDS
ATGTCTGCAGGATGTACAGG+AGG 0.691250 2:+3395610 MsG0280006554.01.T01:intron
TGTCAATTGATCCACTCCGG+TGG 0.707723 2:+3393166 MsG0280006554.01.T01:CDS
TGTACTAATGGTGAAATGTG+TGG 0.716008 2:+3393301 MsG0280006554.01.T01:CDS
AATGTGTGGCCACTATACTC+AGG 0.735120 2:+3393315 MsG0280006554.01.T01:CDS
GGTTGGTGTGTCAATCACAG+AGG 0.794535 2:-3395654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTCAAATATTGTTT+GGG + Chr2:3393090-3393109 MsG0280006554.01.T01:CDS 10.0%
!! TGGTTAAAAAAAAAAAATTA+AGG + Chr2:3394333-3394352 MsG0280006554.01.T01:intron 10.0%
!! TTAAAATTTCAAATATTGTT+TGG + Chr2:3393089-3393108 MsG0280006554.01.T01:CDS 10.0%
!!! AAAACTAACAATTTTTTTTT+TGG + Chr2:3395399-3395418 MsG0280006554.01.T01:intron 10.0%
!!! TTTTAAATGATACATATTAA+CGG - Chr2:3395251-3395270 None:intergenic 10.0%
!!! TTTTTAGTTTTATTTTATCT+TGG - Chr2:3393524-3393543 None:intergenic 10.0%
!! AATGATATATTATTTAATCC+AGG - Chr2:3393698-3393717 None:intergenic 15.0%
!! TATAACAAAACACATTAATA+AGG + Chr2:3394671-3394690 MsG0280006554.01.T01:intron 15.0%
!!! AACTATTAAACCTTTATTTT+AGG - Chr2:3394423-3394442 None:intergenic 15.0%
!! AAAAAAAAAATTAAGGAGTG+TGG + Chr2:3394340-3394359 MsG0280006554.01.T01:intron 20.0%
!! AAAAAATGAATCACTTAGTA+AGG - Chr2:3393451-3393470 None:intergenic 20.0%
!! ATCATTTAAAAAAAAAGACG+CGG + Chr2:3395260-3395279 MsG0280006554.01.T01:intron 20.0%
!! GTTTCAATTAGAAATTGTTA+GGG - Chr2:3394485-3394504 None:intergenic 20.0%
!! TACAAATGTAACATCAAATA+TGG - Chr2:3394758-3394777 None:intergenic 20.0%
!! TACTATTTCACCTAAAATAA+AGG + Chr2:3394410-3394429 MsG0280006554.01.T01:intron 20.0%
!! TGTTTCAATTAGAAATTGTT+AGG - Chr2:3394486-3394505 None:intergenic 20.0%
!! TTACTACTATAATCATAGTT+TGG - Chr2:3393277-3393296 None:intergenic 20.0%
!!! ACTATTTTCGAGTTTTTTTA+TGG + Chr2:3393749-3393768 MsG0280006554.01.T01:intron 20.0%
!!! ATTATTTTTTTTCTTCGTTC+GGG - Chr2:3395217-3395236 None:intergenic 20.0%
!!! ATTTGAAGTATGTATTAAAC+TGG - Chr2:3395318-3395337 None:intergenic 20.0%
!!! CATTATTTTTTTTCTTCGTT+CGG - Chr2:3395218-3395237 None:intergenic 20.0%
!!! TTATTTTAGGTGAAATAGTA+CGG - Chr2:3394410-3394429 None:intergenic 20.0%
!!! TTTTGAAGTTTCAAATTGTT+AGG - Chr2:3395375-3395394 None:intergenic 20.0%
! AGTTATATATGATGAACTCA+CGG - Chr2:3393565-3393584 None:intergenic 25.0%
! ATAACACTGACAAAAGAATT+AGG + Chr2:3394368-3394387 MsG0280006554.01.T01:intron 25.0%
! ATACCAAAATGTACTTTAGT+TGG - Chr2:3394722-3394741 None:intergenic 25.0%
! ATTTAATCCAAGATCTCTTA+AGG - Chr2:3393687-3393706 None:intergenic 25.0%
! GTATATGATGTGATCTTAAT+AGG - Chr2:3395514-3395533 None:intergenic 25.0%
! GTCATTGAAATGTATTTGTA+TGG + Chr2:3394313-3394332 MsG0280006554.01.T01:intron 25.0%
! GTTAGGGTTATAAATATACA+CGG - Chr2:3394469-3394488 None:intergenic 25.0%
! TATGGTCTGTTTCAATTAAT+TGG + Chr2:3393767-3393786 MsG0280006554.01.T01:intron 25.0%
! TGACTAACAAAACATTTGTT+TGG - Chr2:3394248-3394267 None:intergenic 25.0%
! TTAGGGTTATAAATATACAC+GGG - Chr2:3394468-3394487 None:intergenic 25.0%
! TTAGGTTTAACACTCATTAT+TGG + Chr2:3392983-3393002 MsG0280006554.01.T01:CDS 25.0%
! TTATATTCTAACGTTTGTCA+AGG - Chr2:3394613-3394632 None:intergenic 25.0%
! TTTAATCCAAGATCTCTTAA+GGG - Chr2:3393686-3393705 None:intergenic 25.0%
!!! ACTATTTTCGAGTTTTCTTA+TGG + Chr2:3394071-3394090 MsG0280006554.01.T01:intron 25.0%
AACTGTTTGGTTGTAAATGT+CGG - Chr2:3395569-3395588 None:intergenic 30.0%
AAGGATAAAATGTTAGAGGA+GGG - Chr2:3394522-3394541 None:intergenic 30.0%
AGAAAGAGATACTAAGACTT+TGG + Chr2:3394291-3394310 MsG0280006554.01.T01:intron 30.0%
AGTAGTAACTCATGTACTAA+TGG + Chr2:3393289-3393308 MsG0280006554.01.T01:CDS 30.0%
AGTGAAGGATAAAATGTTAG+AGG - Chr2:3394526-3394545 None:intergenic 30.0%
ATAGCAAATGAAACAACCAA+TGG + Chr2:3394930-3394949 MsG0280006554.01.T01:intron 30.0%
CATACACATCAAAAACTGTT+TGG - Chr2:3395582-3395601 None:intergenic 30.0%
GGTTCGTATTACAAAAAACT+TGG - Chr2:3394701-3394720 None:intergenic 30.0%
GTTATATATGATGAACTCAC+GGG - Chr2:3393564-3393583 None:intergenic 30.0%
TCCAAAAGGTTTACATTTCA+AGG - Chr2:3395013-3395032 None:intergenic 30.0%
TCCATTATCACATTTCACTT+TGG - Chr2:3393374-3393393 None:intergenic 30.0%
! AACATTAGTTGTGTTTTTCC+TGG + Chr2:3393804-3393823 MsG0280006554.01.T01:intron 30.0%
! AATGAGATTCTTTTGTCTGA+TGG + Chr2:3394975-3394994 MsG0280006554.01.T01:intron 30.0%
! ACCTTGAAATGTAAACCTTT+TGG + Chr2:3395009-3395028 MsG0280006554.01.T01:intron 30.0%
! GAACCAACTAAAGTACATTT+TGG + Chr2:3394716-3394735 MsG0280006554.01.T01:intron 30.0%
! TCTAGAGTTACTAATAGGAA+AGG - Chr2:3394817-3394836 None:intergenic 30.0%
!! AAAGTGAAATGTGATAATGG+AGG + Chr2:3393373-3393392 MsG0280006554.01.T01:intron 30.0%
AGATAGTCGCTTAAACATGT+TGG - Chr2:3394892-3394911 None:intergenic 35.0%
ATCGGTTACAAAACCTAACA+GGG + Chr2:3395751-3395770 MsG0280006554.01.T01:CDS 35.0%
CCTATTAGTAACTCTAGACA+TGG + Chr2:3394819-3394838 MsG0280006554.01.T01:intron 35.0%
CTTTATCCCTTAAGAGATCT+TGG + Chr2:3393677-3393696 MsG0280006554.01.T01:intron 35.0%
GAAGGATAAAATGTTAGAGG+AGG - Chr2:3394523-3394542 None:intergenic 35.0%
GCCAAAGTGAAATGTGATAA+TGG + Chr2:3393370-3393389 MsG0280006554.01.T01:intron 35.0%
TAGGAAAGGCTTGAAGATAT+TGG - Chr2:3394803-3394822 None:intergenic 35.0%
TCAACGAAGACAATTTCCAT+TGG - Chr2:3394949-3394968 None:intergenic 35.0%
TGTACTAATGGTGAAATGTG+TGG + Chr2:3393301-3393320 MsG0280006554.01.T01:CDS 35.0%
! AAAAAAAGACGCGGTATTGA+AGG + Chr2:3395269-3395288 MsG0280006554.01.T01:intron 35.0%
! CCATGTCTAGAGTTACTAAT+AGG - Chr2:3394822-3394841 None:intergenic 35.0%
! CTCAATCAATTTTCTCCCAT+GGG - Chr2:3394858-3394877 None:intergenic 35.0%
! TTTTCTCTGTTGTGCTTGTT+AGG + Chr2:3392965-3392984 MsG0280006554.01.T01:CDS 35.0%
!! ATATTGGTTCATGATGACGA+GGG - Chr2:3394787-3394806 None:intergenic 35.0%
AAGCTATGCTAATCAACGCA+AGG + Chr2:3393138-3393157 MsG0280006554.01.T01:CDS 40.0%
AGACACGTGTAATGAAGTTG+GGG + Chr2:3395132-3395151 MsG0280006554.01.T01:intron 40.0%
AGAGTGAGAGAGAAAGAGAT+AGG - Chr2:3393659-3393678 None:intergenic 40.0%
AGCTATGCTAATCAACGCAA+GGG + Chr2:3393139-3393158 MsG0280006554.01.T01:CDS 40.0%
CACAGAGTTAATGCTATCAG+AGG - Chr2:3395702-3395721 None:intergenic 40.0%
CAGACACGTGTAATGAAGTT+GGG + Chr2:3395131-3395150 MsG0280006554.01.T01:intron 40.0%
CAGGCTTGTGTACTTTAAGT+TGG + Chr2:3394202-3394221 MsG0280006554.01.T01:intron 40.0%
CCATGGGAGAAAATTGATTG+AGG + Chr2:3394856-3394875 MsG0280006554.01.T01:intron 40.0%
CTCTGATAGCATTAACTCTG+TGG + Chr2:3395700-3395719 MsG0280006554.01.T01:CDS 40.0%
GATTGTCAATTGATCCACTC+CGG + Chr2:3393163-3393182 MsG0280006554.01.T01:CDS 40.0%
GCAAATTAATACCATCGACC+AGG + Chr2:3393586-3393605 MsG0280006554.01.T01:intron 40.0%
TCAGACACGTGTAATGAAGT+TGG + Chr2:3395130-3395149 MsG0280006554.01.T01:intron 40.0%
TGGAGAAACACAAAGCGTAT+TGG + Chr2:3393343-3393362 MsG0280006554.01.T01:CDS 40.0%
TTAAGACTTGTCTTGCTGGT+TGG - Chr2:3395674-3395693 None:intergenic 40.0%
TTTCGCCAATATAGTTGCCA+GGG - Chr2:3393426-3393445 None:intergenic 40.0%
! CATCGGTTACAAAACCTAAC+AGG + Chr2:3395750-3395769 MsG0280006554.01.T01:CDS 40.0%
! CCTCAATCAATTTTCTCCCA+TGG - Chr2:3394859-3394878 None:intergenic 40.0%
! TCCTTTTGCTTAGTGCTCTT+GGG + Chr2:3394143-3394162 MsG0280006554.01.T01:intron 40.0%
! TTCCTTTTGCTTAGTGCTCT+TGG + Chr2:3394142-3394161 MsG0280006554.01.T01:intron 40.0%
! TTGAACACGATTGTTGCTTC+TGG - Chr2:3395039-3395058 None:intergenic 40.0%
!! AACTCCACAATTTTCAAGCC+TGG - Chr2:3393607-3393626 None:intergenic 40.0%
!! GATATTGGTTCATGATGACG+AGG - Chr2:3394788-3394807 None:intergenic 40.0%
!! GTTGCTTCTGGAATTCCAAA+AGG - Chr2:3395027-3395046 None:intergenic 40.0%
!! TAAACAGCTTTAGTGTCGGT+AGG - Chr2:3395797-3395816 None:intergenic 40.0%
AACTCTGTGGTTGTTGAACC+TGG + Chr2:3395713-3395732 MsG0280006554.01.T01:CDS 45.0%
AATGTGTGGCCACTATACTC+AGG + Chr2:3393315-3393334 MsG0280006554.01.T01:CDS 45.0%
ACGGGTCAAAAGTCTAGTGA+AGG - Chr2:3394541-3394560 None:intergenic 45.0%
CATCGAAGCAGTGAAGTTGT+GGG + Chr2:3393240-3393259 MsG0280006554.01.T01:CDS 45.0%
CCAGCAAGACAAGTCTTAAG+AGG + Chr2:3395675-3395694 MsG0280006554.01.T01:CDS 45.0%
CCTCTTAAGACTTGTCTTGC+TGG - Chr2:3395678-3395697 None:intergenic 45.0%
CTTTCGCCAATATAGTTGCC+AGG - Chr2:3393427-3393446 None:intergenic 45.0%
GAAAATATCGCAGAGAGCAG+CGG + Chr2:3393205-3393224 MsG0280006554.01.T01:CDS 45.0%
GACACGTGTAATGAAGTTGG+GGG + Chr2:3395133-3395152 MsG0280006554.01.T01:intron 45.0%
GCACGGGTCTCTAATAATAC+TGG + Chr2:3394567-3394586 MsG0280006554.01.T01:intron 45.0%
GTGATCTCACTTACTAGTGC+AGG + Chr2:3394183-3394202 MsG0280006554.01.T01:intron 45.0%
TATGAGTGTGTGATGTCTGC+AGG + Chr2:3395598-3395617 MsG0280006554.01.T01:intron 45.0%
TCCAAACCACCTGAGTATAG+TGG - Chr2:3393327-3393346 None:intergenic 45.0%
TCGACCAGGCTTGAAAATTG+TGG + Chr2:3393600-3393619 MsG0280006554.01.T01:intron 45.0%
TGCCCACAACAATGCAAGAT+CGG + Chr2:3393051-3393070 MsG0280006554.01.T01:CDS 45.0%
TGCCGATCTTGCATTGTTGT+GGG - Chr2:3393056-3393075 None:intergenic 45.0%
TGCTTAGTGCTCTTGGGTTT+AGG + Chr2:3394149-3394168 MsG0280006554.01.T01:intron 45.0%
TTCGCCAATATAGTTGCCAG+GGG - Chr2:3393425-3393444 None:intergenic 45.0%
!! ACCCAAGAGCACTAAGCAAA+AGG - Chr2:3394147-3394166 None:intergenic 45.0%
!! CAATTTTCAAGCCTGGTCGA+TGG - Chr2:3393600-3393619 None:intergenic 45.0%
!! CTTTAAGTTGGCTTGCTGCT+CGG + Chr2:3394214-3394233 MsG0280006554.01.T01:intron 45.0%
ATGTCTGCAGGATGTACAGG+AGG + Chr2:3395610-3395629 MsG0280006554.01.T01:intron 50.0%
CTGCCGATCTTGCATTGTTG+TGG - Chr2:3393057-3393076 None:intergenic 50.0%
GCATCGAAGCAGTGAAGTTG+TGG + Chr2:3393239-3393258 MsG0280006554.01.T01:CDS 50.0%
GCCACTATACTCAGGTGGTT+TGG + Chr2:3393323-3393342 MsG0280006554.01.T01:CDS 50.0%
GGCAACGTATAGTTGCCCAT+GGG + Chr2:3394840-3394859 MsG0280006554.01.T01:intron 50.0%
GTAGTCTGCTGGTGAGTCTT+GGG - Chr2:3393026-3393045 None:intergenic 50.0%
GTGATGTCTGCAGGATGTAC+AGG + Chr2:3395607-3395626 MsG0280006554.01.T01:intron 50.0%
GTTGTTGAACCTGGTGAAGC+TGG + Chr2:3395722-3395741 MsG0280006554.01.T01:CDS 50.0%
TCGCCAATATAGTTGCCAGG+GGG - Chr2:3393424-3393443 None:intergenic 50.0%
TGGCAACGTATAGTTGCCCA+TGG + Chr2:3394839-3394858 MsG0280006554.01.T01:intron 50.0%
TGTCAATTGATCCACTCCGG+TGG + Chr2:3393166-3393185 MsG0280006554.01.T01:CDS 50.0%
TTGACACGAACAGCCCTGTT+AGG - Chr2:3395767-3395786 None:intergenic 50.0%
! GGTTGGTGTGTCAATCACAG+AGG - Chr2:3395657-3395676 None:intergenic 50.0%
! TTTTGACCCGTGCTATCGCA+CGG + Chr2:3394550-3394569 MsG0280006554.01.T01:intron 50.0%
ACTTGCAATTACGACCCCCC+TGG + Chr2:3393406-3393425 MsG0280006554.01.T01:intron 55.0%
ATCAAACCCACACGACGCAC+GGG + Chr2:3395077-3395096 MsG0280006554.01.T01:intron 55.0%
CAATTGATCCACTCCGGTGG+TGG + Chr2:3393169-3393188 MsG0280006554.01.T01:CDS 55.0%
CATCAAACCCACACGACGCA+CGG + Chr2:3395076-3395095 MsG0280006554.01.T01:intron 55.0%
CGAAGCAGTGAAGTTGTGGG+TGG + Chr2:3393243-3393262 MsG0280006554.01.T01:CDS 55.0%
CGCCAATATAGTTGCCAGGG+GGG - Chr2:3393423-3393442 None:intergenic 55.0%
CGTAGTCTGCTGGTGAGTCT+TGG - Chr2:3393027-3393046 None:intergenic 55.0%
GACCCCCCTGGCAACTATAT+TGG + Chr2:3393418-3393437 MsG0280006554.01.T01:intron 55.0%
GTGTGGCCACTATACTCAGG+TGG + Chr2:3393318-3393337 MsG0280006554.01.T01:CDS 55.0%
TAGAGACCCGTGCGATAGCA+CGG - Chr2:3394560-3394579 None:intergenic 55.0%
TGAACCTGGTGAAGCTGGTC+AGG + Chr2:3395727-3395746 MsG0280006554.01.T01:CDS 55.0%
TGGGCATTCACGTAGTCTGC+TGG - Chr2:3393037-3393056 None:intergenic 55.0%
TGGTGAAGCTGGTCAGGCAT+CGG + Chr2:3395733-3395752 MsG0280006554.01.T01:CDS 55.0%
TTTGACCCGTGCTATCGCAC+GGG + Chr2:3394551-3394570 MsG0280006554.01.T01:intron 55.0%
!! TAAGTTGGCTTGCTGCTCGG+AGG + Chr2:3394217-3394236 MsG0280006554.01.T01:intron 55.0%
AGAGACCCGTGCGATAGCAC+GGG - Chr2:3394559-3394578 None:intergenic 60.0%
GATGCCTGACCAGCTTCACC+AGG - Chr2:3395734-3395753 None:intergenic 60.0%
! TGATCCACTCCGGTGGTGGT+GGG + Chr2:3393173-3393192 MsG0280006554.01.T01:CDS 60.0%
! TTGATCCACTCCGGTGGTGG+TGG + Chr2:3393172-3393191 MsG0280006554.01.T01:CDS 60.0%
CTCAGACCCGTGCGTCGTGT+GGG - Chr2:3395086-3395105 None:intergenic 65.0%
GAGAGCAGCGGCGACATGAG+TGG + Chr2:3393217-3393236 MsG0280006554.01.T01:CDS 65.0%
TCCGTAACGCCCACCACCAC+CGG - Chr2:3393185-3393204 None:intergenic 65.0%
TCTCAGACCCGTGCGTCGTG+TGG - Chr2:3395087-3395106 None:intergenic 65.0%
!! GTTGGCTTGCTGCTCGGAGG+CGG + Chr2:3394220-3394239 MsG0280006554.01.T01:intron 65.0%
!! TCCGGTGGTGGTGGGCGTTA+CGG + Chr2:3393181-3393200 MsG0280006554.01.T01:CDS 65.0%
AACGCCCACCACCACCGGAG+TGG - Chr2:3393180-3393199 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 3392956 3395817 3392956 ID=MsG0280006554.01;Name=MsG0280006554.01
Chr2 mRNA 3392956 3395817 3392956 ID=MsG0280006554.01.T01;Parent=MsG0280006554.01;Name=MsG0280006554.01.T01;_AED=0.65;_eAED=0.65;_QI=0|0|0|0.5|1|1|2|0|205
Chr2 exon 3392956 3393375 3392956 ID=MsG0280006554.01.T01:exon:1662;Parent=MsG0280006554.01.T01
Chr2 exon 3395620 3395817 3395620 ID=MsG0280006554.01.T01:exon:1663;Parent=MsG0280006554.01.T01
Chr2 CDS 3392956 3393375 3392956 ID=MsG0280006554.01.T01:cds;Parent=MsG0280006554.01.T01
Chr2 CDS 3395620 3395817 3395620 ID=MsG0280006554.01.T01:cds;Parent=MsG0280006554.01.T01
Gene Sequence

>MsG0280006554.01.T01

ATGGGTTCATTTTCTCTGTTGTGCTTGTTAGGTTTAACACTCATTATTGGTAGTCACGTTGCACATGCCCAAGACTCACCAGCAGACTACGTGAATGCCCACAACAATGCAAGATCGGCAGTTCATACAAACGTTAAAATTTCAAATATTGTTTGGGACAACAAAGTTGCTGCTTTTGCACAAAGCTATGCTAATCAACGCAAGGGTGATTGTCAATTGATCCACTCCGGTGGTGGTGGGCGTTACGGAGAAAATATCGCAGAGAGCAGCGGCGACATGAGTGGCATCGAAGCAGTGAAGTTGTGGGTGGATGAAAAACCAAACTATGATTATAGTAGTAACTCATGTACTAATGGTGAAATGTGTGGCCACTATACTCAGGTGGTTTGGAGAAACACAAAGCGTATTGGATGTGCCAAAGATGTACAGGAGGTTGAAGACTCATGCAGCAATACCTCTGTGATTGACACACCAACCAGCAAGACAAGTCTTAAGAGGTCCTCTGATAGCATTAACTCTGTGGTTGTTGAACCTGGTGAAGCTGGTCAGGCATCGGTTACAAAACCTAACAGGGCTGTTCGTGTCAAGATTGAGCCTACCGACACTAAAGCTGTTTAA
Protein sequence

>MsG0280006554.01.T01

MGSFSLLCLLGLTLIIGSHVAHAQDSPADYVNAHNNARSAVHTNVKISNIVWDNKVAAFAQSYANQRKGDCQLIHSGGGGRYGENIAESSGDMSGIEAVKLWVDEKPNYDYSSNSCTNGEMCGHYTQVVWRNTKRIGCAKDVQEVEDSCSNTSVIDTPTSKTSLKRSSDSINSVVVEPGEAGQASVTKPNRAVRVKIEPTDTKAV*