Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006552.01.T01 | XP_003593358.1 | 90.184 | 163 | 15 | 1 | 1 | 163 | 1 | 162 | 1.62E-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006552.01.T01 | Q9ZNS4 | 64.242 | 165 | 51 | 4 | 1 | 163 | 3 | 161 | 5.19E-69 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006552.01.T01 | G7IFD1 | 90.184 | 163 | 15 | 1 | 1 | 163 | 1 | 162 | 7.72e-105 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049002.01 | MsG0280006552.01 | 0.800935 | 1.141022e-48 | 5.380525e-46 |
| MsG0180000489.01 | MsG0280006552.01 | 0.809878 | 1.521648e-50 | 9.038871e-48 |
| MsG0180000549.01 | MsG0280006552.01 | 0.800282 | 1.550872e-48 | 7.192817e-46 |
| MsG0180000599.01 | MsG0280006552.01 | 0.827112 | 1.872161e-54 | 1.790236e-51 |
| MsG0180000942.01 | MsG0280006552.01 | 0.862215 | 5.933888e-64 | 1.724419e-60 |
| MsG0180000977.01 | MsG0280006552.01 | 0.850131 | 2.070891e-60 | 4.015586e-57 |
| MsG0180001119.01 | MsG0280006552.01 | 0.855798 | 4.952841e-62 | 1.157290e-58 |
| MsG0180001120.01 | MsG0280006552.01 | 0.840402 | 8.887028e-58 | 1.264535e-54 |
| MsG0180001590.01 | MsG0280006552.01 | 0.826557 | 2.541815e-54 | 2.391779e-51 |
| MsG0180001591.01 | MsG0280006552.01 | 0.843729 | 1.171115e-58 | 1.849200e-55 |
| MsG0180001704.01 | MsG0280006552.01 | 0.814712 | 1.339920e-51 | 9.057462e-49 |
| MsG0180001752.01 | MsG0280006552.01 | 0.812960 | 3.258983e-51 | 2.100709e-48 |
| MsG0180002700.01 | MsG0280006552.01 | 0.818284 | 2.124324e-52 | 1.583322e-49 |
| MsG0180003755.01 | MsG0280006552.01 | 0.803204 | 3.897590e-49 | 1.946867e-46 |
| MsG0180004025.01 | MsG0280006552.01 | 0.821040 | 4.987104e-53 | 4.013056e-50 |
| MsG0180004106.01 | MsG0280006552.01 | 0.844026 | 9.755344e-59 | 1.554803e-55 |
| MsG0180004112.01 | MsG0280006552.01 | 0.835821 | 1.342362e-56 | 1.660394e-53 |
| MsG0180004246.01 | MsG0280006552.01 | 0.801233 | 9.919020e-49 | 4.712640e-46 |
| MsG0180004518.01 | MsG0280006552.01 | 0.819279 | 1.262309e-52 | 9.670535e-50 |
| MsG0180005339.01 | MsG0280006552.01 | 0.812756 | 3.611401e-51 | 2.315481e-48 |
| MsG0180005639.01 | MsG0280006552.01 | 0.885975 | 5.114422e-72 | 3.584200e-68 |
| MsG0180005687.01 | MsG0280006552.01 | 0.860453 | 2.043489e-63 | 5.588914e-60 |
| MsG0180006035.01 | MsG0280006552.01 | 0.803751 | 3.002207e-49 | 1.520868e-46 |
| MsG0180006054.01 | MsG0280006552.01 | 0.807514 | 4.869470e-50 | 2.717677e-47 |
| MsG0280006552.01 | MsG0280006553.01 | 0.866259 | 3.249276e-65 | 1.088253e-61 |
| MsG0280006552.01 | MsG0280006872.01 | 0.839326 | 1.694213e-57 | 2.331650e-54 |
| MsG0280006552.01 | MsG0280006914.01 | 0.821329 | 4.277784e-53 | 3.469793e-50 |
| MsG0280006552.01 | MsG0280006919.01 | 0.815146 | 1.073669e-51 | 7.342871e-49 |
| MsG0280006552.01 | MsG0280007513.01 | -0.803032 | 4.229882e-49 | 2.103551e-46 |
| MsG0280006552.01 | MsG0280007867.01 | 0.881072 | 3.252475e-70 | 1.878337e-66 |
| MsG0280006552.01 | MsG0280008098.01 | 0.803694 | 3.084558e-49 | 1.560304e-46 |
| MsG0280006552.01 | MsG0280008172.01 | 0.845937 | 2.972965e-59 | 5.035324e-56 |
| MsG0280006552.01 | MsG0280009435.01 | 0.827736 | 1.327223e-54 | 1.292376e-51 |
| MsG0280006552.01 | MsG0280009436.01 | 0.832581 | 8.712618e-56 | 9.779962e-53 |
| MsG0280006552.01 | MsG0280009624.01 | 0.855818 | 4.886249e-62 | 1.142464e-58 |
| MsG0280006552.01 | MsG0280009756.01 | 0.819418 | 1.173772e-52 | 9.027461e-50 |
| MsG0280006552.01 | MsG0280009757.01 | 0.821483 | 3.941499e-53 | 3.210671e-50 |
| MsG0280006552.01 | MsG0280009901.01 | 0.844666 | 6.564125e-59 | 1.067358e-55 |
| MsG0280006552.01 | MsG0280009960.01 | 0.805598 | 1.235807e-49 | 6.564809e-47 |
| MsG0280006552.01 | MsG0280010218.01 | 0.803162 | 3.976609e-49 | 1.984230e-46 |
| MsG0280006552.01 | MsG0280010675.01 | 0.803392 | 3.562633e-49 | 1.788189e-46 |
| MsG0280006552.01 | MsG0280011110.01 | -0.830132 | 3.487532e-55 | 3.642129e-52 |
| MsG0280006552.01 | MsG0280011255.01 | 0.808607 | 2.849688e-50 | 1.636520e-47 |
| MsG0280006552.01 | MsG0380011731.01 | 0.801890 | 7.271644e-49 | 3.512856e-46 |
| MsG0280006552.01 | MsG0380011883.01 | 0.806358 | 8.552559e-50 | 4.632496e-47 |
| MsG0280006552.01 | MsG0380012567.01 | 0.824577 | 7.483862e-54 | 6.656107e-51 |
| MsG0280006552.01 | MsG0380013813.01 | 0.806188 | 9.285435e-50 | 5.008079e-47 |
| MsG0280006552.01 | MsG0380014386.01 | 0.835749 | 1.399585e-56 | 1.727572e-53 |
| MsG0280006552.01 | MsG0380014510.01 | 0.817860 | 2.649178e-52 | 1.951725e-49 |
| MsG0280006552.01 | MsG0380014517.01 | 0.829428 | 5.176044e-55 | 5.296145e-52 |
| MsG0280006552.01 | MsG0380014909.01 | 0.806566 | 7.730042e-50 | 4.209417e-47 |
| MsG0280006552.01 | MsG0380014982.01 | 0.836492 | 9.064592e-57 | 1.144142e-53 |
| MsG0280006552.01 | MsG0380015891.01 | 0.818828 | 1.598946e-52 | 1.209826e-49 |
| MsG0280006552.01 | MsG0380016188.01 | -0.804300 | 2.308235e-49 | 1.185911e-46 |
| MsG0280006552.01 | MsG0380016666.01 | 0.813002 | 3.190813e-51 | 2.059212e-48 |
| MsG0280006552.01 | MsG0380017931.01 | 0.804037 | 2.618468e-49 | 1.336274e-46 |
| MsG0280006552.01 | MsG0480018670.01 | 0.841128 | 5.733927e-58 | 8.343656e-55 |
| MsG0280006552.01 | MsG0480019065.01 | 0.823048 | 1.708163e-53 | 1.454773e-50 |
| MsG0280006552.01 | MsG0480019083.01 | 0.801257 | 9.806713e-49 | 4.662029e-46 |
| MsG0280006552.01 | MsG0480019195.01 | 0.807164 | 5.779011e-50 | 3.195916e-47 |
| MsG0280006552.01 | MsG0480019197.01 | 0.806857 | 6.710273e-50 | 3.681619e-47 |
| MsG0280006552.01 | MsG0480019313.01 | 0.844953 | 5.491995e-59 | 9.011936e-56 |
| MsG0280006552.01 | MsG0480019384.01 | 0.815946 | 7.124307e-52 | 4.980508e-49 |
| MsG0280006552.01 | MsG0480020229.01 | 0.850796 | 1.346862e-60 | 2.669512e-57 |
| MsG0280006552.01 | MsG0480020322.01 | 0.819164 | 1.340978e-52 | 1.024047e-49 |
| MsG0280006552.01 | MsG0480020323.01 | 0.822440 | 2.366126e-53 | 1.980626e-50 |
| MsG0280006552.01 | MsG0480020433.01 | 0.845568 | 3.745180e-59 | 6.267156e-56 |
| MsG0280006552.01 | MsG0480021564.01 | 0.813753 | 2.181834e-51 | 1.437034e-48 |
| MsG0280006552.01 | MsG0480021830.01 | 0.839185 | 1.842789e-57 | 2.525133e-54 |
| MsG0280006552.01 | MsG0480022065.01 | 0.832344 | 9.971954e-56 | 1.111406e-52 |
| MsG0280006552.01 | MsG0480022162.01 | 0.809512 | 1.824331e-50 | 1.073209e-47 |
| MsG0280006552.01 | MsG0480022535.01 | 0.890520 | 9.149545e-74 | 7.718506e-70 |
| MsG0280006552.01 | MsG0480022572.01 | 0.802956 | 4.385826e-49 | 2.176905e-46 |
| MsG0280006552.01 | MsG0480022918.01 | 0.817985 | 2.481916e-52 | 1.834717e-49 |
| MsG0280006552.01 | MsG0480023190.01 | 0.811055 | 8.475079e-51 | 5.193674e-48 |
| MsG0280006552.01 | MsG0480023498.01 | 0.814406 | 1.566281e-51 | 1.050105e-48 |
| MsG0280006552.01 | MsG0480023605.01 | 0.824975 | 6.031705e-54 | 5.425998e-51 |
| MsG0280006552.01 | MsG0480023607.01 | 0.830537 | 2.777639e-55 | 2.934778e-52 |
| MsG0280006552.01 | MsG0580024340.01 | 0.887916 | 9.364084e-73 | 7.100351e-69 |
| MsG0280006552.01 | MsG0580024447.01 | 0.834712 | 2.557166e-56 | 3.059203e-53 |
| MsG0280006552.01 | MsG0580024717.01 | 0.810347 | 1.206056e-50 | 7.252322e-48 |
| MsG0280006552.01 | MsG0580025226.01 | 0.834820 | 2.402001e-56 | 2.883256e-53 |
| MsG0280006552.01 | MsG0580025610.01 | 0.818375 | 2.025374e-52 | 1.513572e-49 |
| MsG0280006552.01 | MsG0580025644.01 | 0.805700 | 1.176332e-49 | 6.265762e-47 |
| MsG0280006552.01 | MsG0580025686.01 | 0.819532 | 1.105388e-52 | 8.528992e-50 |
| MsG0280006552.01 | MsG0580025827.01 | 0.812631 | 3.847889e-51 | 2.459004e-48 |
| MsG0280006552.01 | MsG0580026031.01 | 0.836209 | 1.070156e-56 | 1.339605e-53 |
| MsG0280006552.01 | MsG0580026156.01 | 0.807302 | 5.401154e-50 | 2.997847e-47 |
| MsG0280006552.01 | MsG0580026498.01 | 0.803339 | 3.655292e-49 | 1.832121e-46 |
| MsG0280006552.01 | MsG0580027348.01 | 0.813411 | 2.595054e-51 | 1.693491e-48 |
| MsG0280006552.01 | MsG0580027789.01 | 0.864727 | 9.874977e-65 | 3.132217e-61 |
| MsG0280006552.01 | MsG0580028179.01 | 0.833661 | 4.690149e-56 | 5.437475e-53 |
| MsG0280006552.01 | MsG0580028419.01 | 0.811040 | 8.540249e-51 | 5.231499e-48 |
| MsG0280006552.01 | MsG0580028845.01 | 0.809232 | 2.094715e-50 | 1.223184e-47 |
| MsG0280006552.01 | MsG0580029182.01 | 0.807227 | 5.603576e-50 | 3.104013e-47 |
| MsG0280006552.01 | MsG0580029185.01 | 0.811610 | 6.425091e-51 | 3.995041e-48 |
| MsG0280006552.01 | MsG0580029394.01 | 0.838133 | 3.445593e-57 | 4.571910e-54 |
| MsG0280006552.01 | MsG0580029433.01 | 0.847046 | 1.481471e-59 | 2.600345e-56 |
| MsG0280006552.01 | MsG0580030071.01 | 0.816911 | 4.331711e-52 | 3.109416e-49 |
| MsG0280006552.01 | MsG0680030514.01 | 0.805555 | 1.261683e-49 | 6.694779e-47 |
| MsG0280006552.01 | MsG0680030599.01 | 0.803342 | 3.648676e-49 | 1.828988e-46 |
| MsG0280006552.01 | MsG0680030680.01 | 0.832994 | 6.877734e-56 | 7.816602e-53 |
| MsG0280006552.01 | MsG0680030907.01 | 0.830794 | 2.402918e-55 | 2.558325e-52 |
| MsG0280006552.01 | MsG0680031523.01 | 0.805015 | 1.636763e-49 | 8.565728e-47 |
| MsG0280006552.01 | MsG0680031996.01 | 0.871376 | 7.162593e-67 | 2.882863e-63 |
| MsG0280006552.01 | MsG0680031997.01 | 0.819623 | 1.053653e-52 | 8.149902e-50 |
| MsG0280006552.01 | MsG0680031998.01 | 0.819730 | 9.961709e-53 | 7.728657e-50 |
| MsG0280006552.01 | MsG0680032002.01 | 0.805863 | 1.086748e-49 | 5.812869e-47 |
| MsG0280006552.01 | MsG0680032003.01 | 0.802130 | 6.492603e-49 | 3.155518e-46 |
| MsG0280006552.01 | MsG0680032246.01 | 0.812576 | 3.954796e-51 | 2.523701e-48 |
| MsG0280006552.01 | MsG0680032254.01 | 0.818701 | 1.708363e-52 | 1.288050e-49 |
| MsG0280006552.01 | MsG0680032413.01 | 0.800432 | 1.444939e-48 | 6.727189e-46 |
| MsG0280006552.01 | MsG0680033136.01 | 0.869364 | 3.271859e-66 | 1.224801e-62 |
| MsG0280006552.01 | MsG0680033447.01 | 0.837937 | 3.871310e-57 | 5.106726e-54 |
| MsG0280006552.01 | MsG0680033644.01 | 0.808271 | 3.361425e-50 | 1.913687e-47 |
| MsG0280006552.01 | MsG0680034028.01 | 0.853781 | 1.903752e-61 | 4.160566e-58 |
| MsG0280006552.01 | MsG0680034032.01 | 0.807313 | 5.371659e-50 | 2.982348e-47 |
| MsG0280006552.01 | MsG0780035960.01 | 0.807112 | 5.927386e-50 | 3.273404e-47 |
| MsG0280006552.01 | MsG0780036050.01 | 0.839371 | 1.649433e-57 | 2.273226e-54 |
| MsG0280006552.01 | MsG0780036116.01 | 0.845203 | 4.702057e-59 | 7.776848e-56 |
| MsG0280006552.01 | MsG0780036126.01 | 0.827426 | 1.575245e-54 | 1.520274e-51 |
| MsG0280006552.01 | MsG0780036182.01 | 0.855303 | 6.904821e-62 | 1.587122e-58 |
| MsG0280006552.01 | MsG0780036218.01 | 0.817351 | 3.450117e-52 | 2.506497e-49 |
| MsG0280006552.01 | MsG0780036509.01 | 0.856488 | 3.109374e-62 | 7.434846e-59 |
| MsG0280006552.01 | MsG0780036613.01 | 0.812961 | 3.257126e-51 | 2.099600e-48 |
| MsG0280006552.01 | MsG0780036620.01 | 0.870400 | 1.502192e-66 | 5.835440e-63 |
| MsG0280006552.01 | MsG0780036623.01 | 0.819802 | 9.592062e-53 | 7.457088e-50 |
| MsG0280006552.01 | MsG0780036624.01 | 0.832000 | 1.212878e-55 | 1.338360e-52 |
| MsG0280006552.01 | MsG0780037105.01 | 0.821667 | 3.573810e-53 | 2.926317e-50 |
| MsG0280006552.01 | MsG0780037351.01 | 0.850858 | 1.293755e-60 | 2.569419e-57 |
| MsG0280006552.01 | MsG0780037363.01 | 0.813623 | 2.331177e-51 | 1.530025e-48 |
| MsG0280006552.01 | MsG0780039161.01 | 0.804473 | 2.124614e-49 | 1.096400e-46 |
| MsG0280006552.01 | MsG0780039336.01 | 0.807045 | 6.121676e-50 | 3.375018e-47 |
| MsG0280006552.01 | MsG0780039438.01 | 0.832885 | 7.322535e-56 | 8.294352e-53 |
| MsG0280006552.01 | MsG0780039964.01 | 0.817874 | 2.630121e-52 | 1.938411e-49 |
| MsG0280006552.01 | MsG0780040235.01 | 0.823260 | 1.524187e-53 | 1.305773e-50 |
| MsG0280006552.01 | MsG0780040278.01 | 0.820018 | 8.559244e-53 | 6.694589e-50 |
| MsG0280006552.01 | MsG0780040441.01 | 0.810191 | 1.302943e-50 | 7.802810e-48 |
| MsG0280006552.01 | MsG0780040700.01 | 0.811974 | 5.351394e-51 | 3.360060e-48 |
| MsG0280006552.01 | MsG0780041742.01 | 0.821956 | 3.064004e-53 | 2.529419e-50 |
| MsG0280006552.01 | MsG0880041852.01 | 0.809211 | 2.117014e-50 | 1.235478e-47 |
| MsG0280006552.01 | MsG0880042084.01 | 0.837163 | 6.113850e-57 | 7.874689e-54 |
| MsG0280006552.01 | MsG0880042085.01 | 0.816825 | 4.529561e-52 | 3.243691e-49 |
| MsG0280006552.01 | MsG0880042086.01 | 0.871319 | 7.480895e-67 | 3.005175e-63 |
| MsG0280006552.01 | MsG0880042415.01 | 0.829448 | 5.119039e-55 | 5.240618e-52 |
| MsG0280006552.01 | MsG0880042416.01 | 0.868614 | 5.726842e-66 | 2.085037e-62 |
| MsG0280006552.01 | MsG0880042417.01 | 0.832449 | 9.395630e-56 | 1.050465e-52 |
| MsG0280006552.01 | MsG0880042948.01 | 0.845876 | 3.089312e-59 | 5.222285e-56 |
| MsG0280006552.01 | MsG0880043107.01 | 0.850739 | 1.397476e-60 | 2.764452e-57 |
| MsG0280006552.01 | MsG0880044612.01 | 0.824527 | 7.690632e-54 | 6.829732e-51 |
| MsG0280006552.01 | MsG0880044615.01 | 0.805639 | 1.211299e-49 | 6.441701e-47 |
| MsG0280006552.01 | MsG0880044618.01 | 0.811373 | 7.232442e-51 | 4.469249e-48 |
| MsG0280006552.01 | MsG0880044619.01 | 0.840234 | 9.829761e-58 | 1.391405e-54 |
| MsG0280006552.01 | MsG0880044620.01 | 0.870217 | 1.724658e-66 | 6.655787e-63 |
| MsG0280006552.01 | MsG0880044623.01 | 0.814031 | 1.895353e-51 | 1.257808e-48 |
| MsG0280006552.01 | MsG0880044625.01 | 0.836391 | 9.619680e-57 | 1.210587e-53 |
| MsG0280006552.01 | MsG0880044626.01 | 0.831050 | 2.079439e-55 | 2.230729e-52 |
| MsG0280006552.01 | MsG0880044629.01 | 0.865814 | 4.494203e-65 | 1.481795e-61 |
| MsG0280006552.01 | MsG0880044876.01 | 0.845901 | 3.040335e-59 | 5.143521e-56 |
| MsG0280006552.01 | MsG0880045402.01 | 0.831396 | 1.709908e-55 | 1.853209e-52 |
| MsG0280006552.01 | MsG0880045409.01 | 0.801649 | 8.149552e-49 | 3.912615e-46 |
| MsG0280006552.01 | MsG0880045423.01 | 0.823406 | 1.408797e-53 | 1.211816e-50 |
| MsG0280006552.01 | MsG0880045624.01 | 0.827896 | 1.214351e-54 | 1.188075e-51 |
| MsG0280006552.01 | MsG0880045722.01 | 0.808333 | 3.260889e-50 | 1.859461e-47 |
| MsG0280006552.01 | MsG0880045927.01 | 0.855192 | 7.441811e-62 | 1.703887e-58 |
| MsG0280006552.01 | MsG0880045929.01 | 0.825129 | 5.546783e-54 | 5.011690e-51 |
| MsG0280006552.01 | MsG0880046200.01 | 0.873380 | 1.538447e-67 | 6.662285e-64 |
| MsG0280006552.01 | MsG0880046434.01 | -0.833066 | 6.602899e-56 | 7.520468e-53 |
| MsG0280006552.01 | MsG0880047481.01 | -0.829189 | 5.914755e-55 | 6.010160e-52 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006552.01.T01 | MTR_2g010600 | 90.184 | 163 | 15 | 1 | 1 | 163 | 1 | 162 | 1.96e-108 | 306 |
| MsG0280006552.01.T01 | MTR_4g050762 | 84.049 | 163 | 25 | 1 | 1 | 163 | 1 | 162 | 1.56e-94 | 271 |
| MsG0280006552.01.T01 | MTR_2g012370 | 84.049 | 163 | 25 | 1 | 1 | 163 | 1 | 162 | 1.56e-94 | 271 |
| MsG0280006552.01.T01 | MTR_2g010590 | 74.847 | 163 | 37 | 2 | 1 | 163 | 1 | 159 | 7.30e-89 | 256 |
| MsG0280006552.01.T01 | MTR_2g010650 | 67.647 | 170 | 43 | 7 | 1 | 163 | 1 | 165 | 2.37e-73 | 217 |
| MsG0280006552.01.T01 | MTR_2g010610 | 72.393 | 163 | 20 | 3 | 1 | 163 | 1 | 138 | 3.54e-72 | 213 |
| MsG0280006552.01.T01 | MTR_2g010630 | 69.872 | 156 | 39 | 5 | 13 | 163 | 13 | 165 | 9.70e-72 | 213 |
| MsG0280006552.01.T01 | MTR_2g010700 | 59.412 | 170 | 60 | 5 | 1 | 163 | 1 | 168 | 1.87e-65 | 197 |
| MsG0280006552.01.T01 | MTR_2g435490 | 54.717 | 159 | 68 | 2 | 6 | 163 | 9 | 164 | 5.16e-63 | 192 |
| MsG0280006552.01.T01 | MTR_2g010640 | 60.479 | 167 | 58 | 6 | 1 | 163 | 1 | 163 | 7.67e-61 | 186 |
| MsG0280006552.01.T01 | MTR_2g010670 | 57.738 | 168 | 62 | 6 | 1 | 163 | 1 | 164 | 1.21e-55 | 172 |
| MsG0280006552.01.T01 | MTR_2g010690 | 54.762 | 168 | 67 | 6 | 1 | 163 | 1 | 164 | 4.60e-53 | 166 |
| MsG0280006552.01.T01 | MTR_2g010580 | 50.331 | 151 | 70 | 3 | 13 | 163 | 19 | 164 | 5.94e-52 | 163 |
| MsG0280006552.01.T01 | MTR_4g092540 | 45.122 | 164 | 84 | 4 | 1 | 163 | 1 | 159 | 9.25e-45 | 145 |
| MsG0280006552.01.T01 | MTR_4g128750 | 50.735 | 136 | 63 | 2 | 29 | 163 | 41 | 173 | 2.25e-44 | 144 |
| MsG0280006552.01.T01 | MTR_4g128770 | 44.203 | 138 | 74 | 3 | 28 | 163 | 70 | 206 | 1.42e-38 | 130 |
| MsG0280006552.01.T01 | MTR_1g067290 | 42.029 | 138 | 74 | 4 | 28 | 162 | 73 | 207 | 6.40e-33 | 116 |
| MsG0280006552.01.T01 | MTR_8g078770 | 38.129 | 139 | 81 | 4 | 28 | 163 | 36 | 172 | 8.38e-26 | 97.1 |
| MsG0280006552.01.T01 | MTR_5g018770 | 31.844 | 179 | 103 | 4 | 4 | 163 | 7 | 185 | 1.17e-24 | 94.4 |
| MsG0280006552.01.T01 | MTR_4g092515 | 55.789 | 95 | 36 | 4 | 1 | 94 | 7 | 96 | 7.50e-23 | 88.2 |
| MsG0280006552.01.T01 | MTR_5g018755 | 38.462 | 91 | 51 | 4 | 78 | 163 | 13 | 103 | 1.16e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006552.01.T01 | AT2G14580 | 64.242 | 165 | 51 | 4 | 1 | 163 | 3 | 161 | 5.29e-70 | 209 |
| MsG0280006552.01.T01 | AT4G33720 | 59.259 | 162 | 62 | 2 | 2 | 163 | 6 | 163 | 5.38e-66 | 199 |
| MsG0280006552.01.T01 | AT2G14610 | 58.788 | 165 | 60 | 4 | 1 | 163 | 3 | 161 | 4.84e-64 | 194 |
| MsG0280006552.01.T01 | AT5G26130 | 58.228 | 158 | 64 | 2 | 6 | 163 | 11 | 166 | 1.41e-59 | 182 |
| MsG0280006552.01.T01 | AT3G19690 | 53.333 | 165 | 71 | 3 | 1 | 163 | 1 | 161 | 5.13e-59 | 181 |
| MsG0280006552.01.T01 | AT4G33710 | 59.859 | 142 | 55 | 2 | 22 | 163 | 27 | 166 | 2.02e-55 | 172 |
| MsG0280006552.01.T01 | AT2G19990 | 54.962 | 131 | 56 | 1 | 33 | 163 | 49 | 176 | 4.33e-50 | 159 |
| MsG0280006552.01.T01 | AT1G50060 | 52.410 | 166 | 71 | 5 | 1 | 163 | 1 | 161 | 8.14e-50 | 157 |
| MsG0280006552.01.T01 | AT4G25790 | 49.640 | 139 | 66 | 2 | 26 | 163 | 75 | 210 | 9.77e-48 | 154 |
| MsG0280006552.01.T01 | AT3G09590 | 48.551 | 138 | 66 | 2 | 28 | 163 | 52 | 186 | 4.81e-46 | 149 |
| MsG0280006552.01.T01 | AT5G57625 | 49.265 | 136 | 65 | 2 | 29 | 163 | 75 | 207 | 7.64e-46 | 149 |
| MsG0280006552.01.T01 | AT1G50050 | 53.012 | 166 | 71 | 5 | 1 | 163 | 1 | 162 | 1.02e-45 | 147 |
| MsG0280006552.01.T01 | AT4G30320 | 45.033 | 151 | 78 | 3 | 14 | 163 | 15 | 161 | 6.42e-44 | 142 |
| MsG0280006552.01.T01 | AT4G25780 | 50.000 | 138 | 66 | 3 | 28 | 163 | 54 | 190 | 3.62e-43 | 142 |
| MsG0280006552.01.T01 | AT4G33730 | 48.428 | 159 | 68 | 5 | 14 | 163 | 19 | 172 | 3.97e-43 | 141 |
| MsG0280006552.01.T01 | AT1G50050 | 51.829 | 164 | 72 | 5 | 1 | 161 | 1 | 160 | 1.72e-42 | 141 |
| MsG0280006552.01.T01 | AT5G02730 | 47.482 | 139 | 68 | 2 | 27 | 163 | 58 | 193 | 2.21e-42 | 140 |
| MsG0280006552.01.T01 | AT1G01310 | 46.715 | 137 | 68 | 3 | 28 | 163 | 87 | 219 | 1.19e-39 | 134 |
| MsG0280006552.01.T01 | AT4G31470 | 44.604 | 139 | 72 | 3 | 26 | 163 | 51 | 185 | 2.37e-38 | 129 |
| MsG0280006552.01.T01 | AT4G07820 | 46.479 | 142 | 70 | 4 | 22 | 163 | 25 | 160 | 1.12e-37 | 127 |
| MsG0280006552.01.T01 | AT5G66590 | 42.336 | 137 | 77 | 1 | 29 | 163 | 49 | 185 | 5.18e-34 | 118 |
| MsG0280006552.01.T01 | AT2G19970 | 43.262 | 141 | 71 | 5 | 30 | 163 | 39 | 177 | 1.31e-29 | 107 |
| MsG0280006552.01.T01 | AT2G19980 | 37.427 | 171 | 85 | 8 | 3 | 163 | 7 | 165 | 6.67e-26 | 97.1 |
Find 38 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGTTTATCCCTCATTA+TGG | 0.279105 | 2:+3379511 | MsG0280006552.01.T01:CDS |
| GGTGGCGGTGATAAACATTA+TGG | 0.283064 | 2:+3379698 | MsG0280006552.01.T01:CDS |
| CATAGTCTGCTTGTGAGTCT+TGG | 0.335837 | 2:-3379550 | None:intergenic |
| TATTAAGCATGCACTTAGTA+TGG | 0.353177 | 2:-3379968 | None:intergenic |
| GCCATTATACTCAGGTGGTT+TGG | 0.358578 | 2:+3379840 | MsG0280006552.01.T01:CDS |
| TCCAAACCACCTGAGTATAA+TGG | 0.398812 | 2:-3379841 | None:intergenic |
| ATAGTCTGCTTGTGAGTCTT+GGG | 0.401577 | 2:-3379549 | None:intergenic |
| TTGGTGTTGCAAATATTGTT+TGG | 0.407510 | 2:+3379603 | MsG0280006552.01.T01:CDS |
| GTTACTATTATAATCATAGT+TGG | 0.429625 | 2:-3379792 | None:intergenic |
| TGGTGTTGCAAATATTGTTT+GGG | 0.451345 | 2:+3379604 | MsG0280006552.01.T01:CDS |
| TTGACGTCTTGCATCGTTGT+GGG | 0.459049 | 2:-3379579 | None:intergenic |
| GTGGCGGTGATAAACATTAT+GGG | 0.460708 | 2:+3379699 | MsG0280006552.01.T01:CDS |
| ATTATTATCACATCTCACTT+TGG | 0.463790 | 2:-3379888 | None:intergenic |
| CGTTATTATAGTTGCCTGGT+GGG | 0.465282 | 2:-3379940 | None:intergenic |
| GAGAATCTAGCGTGGAGCTC+CGG | 0.490150 | 2:+3379722 | MsG0280006552.01.T01:CDS |
| GTGAGATGTGATAATAATAG+AGG | 0.514467 | 2:+3379893 | MsG0280006552.01.T01:CDS |
| ATCTGAGCCACTCATGTCGC+CGG | 0.523273 | 2:-3379741 | None:intergenic |
| CTTGACGTCTTGCATCGTTG+TGG | 0.543312 | 2:-3379580 | None:intergenic |
| GCTCAGATGCAGTGAAGTTG+TGG | 0.543630 | 2:+3379756 | MsG0280006552.01.T01:CDS |
| CTCAGATGCAGTGAAGTTGT+GGG | 0.551141 | 2:+3379757 | MsG0280006552.01.T01:CDS |
| TGGAGCTCCGGCGACATGAG+TGG | 0.557633 | 2:+3379734 | MsG0280006552.01.T01:CDS |
| GTGTAACATGAACCATAATG+AGG | 0.566235 | 2:-3379523 | None:intergenic |
| ATAATGTTTATCACCGCCAC+CGG | 0.571825 | 2:-3379696 | None:intergenic |
| TCGTTATTATAGTTGCCTGG+TGG | 0.573306 | 2:-3379941 | None:intergenic |
| AAACTATGCTAATCAACGCA+AGG | 0.596763 | 2:+3379652 | MsG0280006552.01.T01:CDS |
| TGGAGAAACTCAGTACGTGT+TGG | 0.598633 | 2:+3379860 | MsG0280006552.01.T01:CDS |
| ACATGCAATTACGACCCACC+AGG | 0.608369 | 2:+3379926 | MsG0280006552.01.T01:CDS |
| AACTATGCTAATCAACGCAA+GGG | 0.616329 | 2:+3379653 | MsG0280006552.01.T01:CDS |
| TGTAACATGAACCATAATGA+GGG | 0.618907 | 2:-3379522 | None:intergenic |
| AACGATGCAAGACGTCAAGT+TGG | 0.620216 | 2:+3379584 | MsG0280006552.01.T01:CDS |
| AAACTGATGCACTCCGGTGG+CGG | 0.623369 | 2:+3379683 | MsG0280006552.01.T01:CDS |
| GTGTGGCCATTATACTCAGG+TGG | 0.627875 | 2:+3379835 | MsG0280006552.01.T01:CDS |
| TGGCGGTGATAAACATTATG+GGG | 0.629775 | 2:+3379700 | MsG0280006552.01.T01:CDS |
| AGTGTGTGGCCATTATACTC+AGG | 0.651003 | 2:+3379832 | MsG0280006552.01.T01:CDS |
| GATTGTAAACTGATGCACTC+CGG | 0.660976 | 2:+3379677 | MsG0280006552.01.T01:CDS |
| TGTAAACTGATGCACTCCGG+TGG | 0.705347 | 2:+3379680 | MsG0280006552.01.T01:CDS |
| ATTATGGGGAGAATCTAGCG+TGG | 0.720756 | 2:+3379714 | MsG0280006552.01.T01:CDS |
| TGTGCTGCTAATAAAGTGTG+TGG | 0.730769 | 2:+3379818 | MsG0280006552.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTACTATTATAATCATAGT+TGG | - | Chr2:3379795-3379814 | None:intergenic | 20.0% |
| ! | ATTATTATCACATCTCACTT+TGG | - | Chr2:3379891-3379910 | None:intergenic | 25.0% |
| GTGAGATGTGATAATAATAG+AGG | + | Chr2:3379893-3379912 | MsG0280006552.01.T01:CDS | 30.0% | |
| TGTAACATGAACCATAATGA+GGG | - | Chr2:3379525-3379544 | None:intergenic | 30.0% | |
| ! | TTTTCGTTATTATAGTTGCC+TGG | - | Chr2:3379947-3379966 | None:intergenic | 30.0% |
| !! | TGGTGTTGCAAATATTGTTT+GGG | + | Chr2:3379604-3379623 | MsG0280006552.01.T01:CDS | 30.0% |
| !! | TTGGTGTTGCAAATATTGTT+TGG | + | Chr2:3379603-3379622 | MsG0280006552.01.T01:CDS | 30.0% |
| AAACTATGCTAATCAACGCA+AGG | + | Chr2:3379652-3379671 | MsG0280006552.01.T01:CDS | 35.0% | |
| AACTATGCTAATCAACGCAA+GGG | + | Chr2:3379653-3379672 | MsG0280006552.01.T01:CDS | 35.0% | |
| GTGTAACATGAACCATAATG+AGG | - | Chr2:3379526-3379545 | None:intergenic | 35.0% | |
| ! | ATTTTCTCTATTGTGTGTGC+TGG | + | Chr2:3379493-3379512 | MsG0280006552.01.T01:CDS | 35.0% |
| ! | TTTTCTCTATTGTGTGTGCT+GGG | + | Chr2:3379494-3379513 | MsG0280006552.01.T01:CDS | 35.0% |
| ATAATGTTTATCACCGCCAC+CGG | - | Chr2:3379699-3379718 | None:intergenic | 40.0% | |
| ATAGTCTGCTTGTGAGTCTT+GGG | - | Chr2:3379552-3379571 | None:intergenic | 40.0% | |
| CGTTATTATAGTTGCCTGGT+GGG | - | Chr2:3379943-3379962 | None:intergenic | 40.0% | |
| GATTGTAAACTGATGCACTC+CGG | + | Chr2:3379677-3379696 | MsG0280006552.01.T01:CDS | 40.0% | |
| GTGGCGGTGATAAACATTAT+GGG | + | Chr2:3379699-3379718 | MsG0280006552.01.T01:CDS | 40.0% | |
| TCCAAACCACCTGAGTATAA+TGG | - | Chr2:3379844-3379863 | None:intergenic | 40.0% | |
| TCGTTATTATAGTTGCCTGG+TGG | - | Chr2:3379944-3379963 | None:intergenic | 40.0% | |
| TGGCGGTGATAAACATTATG+GGG | + | Chr2:3379700-3379719 | MsG0280006552.01.T01:CDS | 40.0% | |
| ! | TGTGCTGCTAATAAAGTGTG+TGG | + | Chr2:3379818-3379837 | MsG0280006552.01.T01:CDS | 40.0% |
| AACGATGCAAGACGTCAAGT+TGG | + | Chr2:3379584-3379603 | MsG0280006552.01.T01:CDS | 45.0% | |
| AGTGTGTGGCCATTATACTC+AGG | + | Chr2:3379832-3379851 | MsG0280006552.01.T01:CDS | 45.0% | |
| ATTATGGGGAGAATCTAGCG+TGG | + | Chr2:3379714-3379733 | MsG0280006552.01.T01:CDS | 45.0% | |
| CATAGTCTGCTTGTGAGTCT+TGG | - | Chr2:3379553-3379572 | None:intergenic | 45.0% | |
| CTCAGATGCAGTGAAGTTGT+GGG | + | Chr2:3379757-3379776 | MsG0280006552.01.T01:CDS | 45.0% | |
| GCCATTATACTCAGGTGGTT+TGG | + | Chr2:3379840-3379859 | MsG0280006552.01.T01:CDS | 45.0% | |
| GCTGGGTTTATCCCTCATTA+TGG | + | Chr2:3379511-3379530 | MsG0280006552.01.T01:CDS | 45.0% | |
| TGGAGAAACTCAGTACGTGT+TGG | + | Chr2:3379860-3379879 | MsG0280006552.01.T01:CDS | 45.0% | |
| TTGACGTCTTGCATCGTTGT+GGG | - | Chr2:3379582-3379601 | None:intergenic | 45.0% | |
| ! | GGTGGCGGTGATAAACATTA+TGG | + | Chr2:3379698-3379717 | MsG0280006552.01.T01:CDS | 45.0% |
| ACATGCAATTACGACCCACC+AGG | + | Chr2:3379926-3379945 | MsG0280006552.01.T01:CDS | 50.0% | |
| CTTGACGTCTTGCATCGTTG+TGG | - | Chr2:3379583-3379602 | None:intergenic | 50.0% | |
| GCTCAGATGCAGTGAAGTTG+TGG | + | Chr2:3379756-3379775 | MsG0280006552.01.T01:CDS | 50.0% | |
| GTGTGGCCATTATACTCAGG+TGG | + | Chr2:3379835-3379854 | MsG0280006552.01.T01:CDS | 50.0% | |
| TGTAAACTGATGCACTCCGG+TGG | + | Chr2:3379680-3379699 | MsG0280006552.01.T01:CDS | 50.0% | |
| AAACTGATGCACTCCGGTGG+CGG | + | Chr2:3379683-3379702 | MsG0280006552.01.T01:CDS | 55.0% | |
| ATCTGAGCCACTCATGTCGC+CGG | - | Chr2:3379744-3379763 | None:intergenic | 55.0% | |
| GAGAATCTAGCGTGGAGCTC+CGG | + | Chr2:3379722-3379741 | MsG0280006552.01.T01:CDS | 55.0% | |
| TGGAGCTCCGGCGACATGAG+TGG | + | Chr2:3379734-3379753 | MsG0280006552.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 3379485 | 3379976 | 3379485 | ID=MsG0280006552.01;Name=MsG0280006552.01 |
| Chr2 | mRNA | 3379485 | 3379976 | 3379485 | ID=MsG0280006552.01.T01;Parent=MsG0280006552.01;Name=MsG0280006552.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|163 |
| Chr2 | exon | 3379485 | 3379976 | 3379485 | ID=MsG0280006552.01.T01:exon:1660;Parent=MsG0280006552.01.T01 |
| Chr2 | CDS | 3379485 | 3379976 | 3379485 | ID=MsG0280006552.01.T01:cds;Parent=MsG0280006552.01.T01 |
| Gene Sequence |
| Protein sequence |
