AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028223.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028223.01.T01 MTR_5g065830 94.886 352 18 0 1 352 1 352 0.0 645
MsG0580028223.01.T01 MTR_4g080990 47.564 349 157 8 4 345 3 332 8.17e-100 304
MsG0580028223.01.T01 MTR_3g100710 48.179 357 163 9 4 345 3 352 5.69e-95 292
MsG0580028223.01.T01 MTR_5g032550 46.575 292 143 5 54 345 58 336 8.83e-80 252
MsG0580028223.01.T01 MTR_3g100710 43.978 357 149 10 4 345 3 323 2.00e-77 246
MsG0580028223.01.T01 MTR_5g032550 51.309 191 93 0 54 244 58 248 1.15e-62 205
MsG0580028223.01.T01 MTR_8g068950 35.422 367 207 9 7 351 9 367 8.39e-57 193
MsG0580028223.01.T01 MTR_5g035360 34.532 278 168 2 6 283 9 272 1.66e-44 159
MsG0580028223.01.T01 MTR_8g063120 36.325 234 149 0 55 288 61 294 3.65e-44 159
MsG0580028223.01.T01 MTR_0172s0050 50.314 159 51 4 351 492 97 244 2.04e-40 146
MsG0580028223.01.T01 MTR_8g063120 37.912 182 113 0 55 236 61 242 4.95e-40 146
MsG0580028223.01.T01 MTR_3g102310 32.215 298 192 7 55 350 56 345 2.21e-35 135
MsG0580028223.01.T01 MTR_3g408350 57.798 109 28 2 395 492 91 192 6.95e-35 129
MsG0580028223.01.T01 MTR_1g107535 33.091 275 167 6 55 320 73 339 1.28e-34 134
MsG0580028223.01.T01 MTR_3g408350 46.405 153 63 3 351 492 93 237 1.45e-34 130
MsG0580028223.01.T01 MTR_4g094942 29.153 295 199 6 55 345 53 341 7.61e-34 131
MsG0580028223.01.T01 MTR_2g089490 28.322 286 190 5 37 319 6 279 4.74e-30 119
MsG0580028223.01.T01 MTR_5g015670 34.314 204 117 6 86 282 101 294 1.60e-28 116
MsG0580028223.01.T01 MTR_2g089490 27.622 286 189 6 37 319 6 276 2.75e-27 111
MsG0580028223.01.T01 MTR_7g044840 45.588 136 60 4 351 483 94 218 1.97e-26 107
MsG0580028223.01.T01 MTR_2g011500 27.092 251 164 5 61 310 66 298 7.28e-26 107
MsG0580028223.01.T01 MTR_3g103080 28.517 263 165 8 86 334 65 318 1.53e-21 95.9
MsG0580028223.01.T01 MTR_4g095790 27.647 170 109 4 88 249 68 231 7.98e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028223.01.T01 AT5G65420 42.121 330 162 10 1 326 1 305 1.08e-68 222
MsG0580028223.01.T01 AT5G65420 41.471 340 160 12 1 326 1 315 5.31e-67 218
MsG0580028223.01.T01 AT2G22490 41.007 278 156 3 55 327 64 338 1.11e-65 216
MsG0580028223.01.T01 AT2G22490 40.288 278 159 2 55 327 64 339 4.88e-65 214
MsG0580028223.01.T01 AT5G10440 45.783 249 127 3 51 298 32 273 1.26e-63 209
MsG0580028223.01.T01 AT5G65420 44.706 255 128 6 1 253 1 244 3.59e-61 201
MsG0580028223.01.T01 AT1G70210 34.420 276 162 3 11 284 22 280 1.25e-49 173
MsG0580028223.01.T01 AT5G10440 46.067 178 95 1 51 227 32 209 4.68e-49 168
MsG0580028223.01.T01 AT5G65420 42.795 229 118 6 1 227 1 218 1.12e-48 168
MsG0580028223.01.T01 AT5G67260 32.013 303 192 8 11 310 21 312 1.71e-35 136
MsG0580028223.01.T01 AT5G67260 32.013 303 192 8 11 310 21 312 2.47e-35 136
MsG0580028223.01.T01 AT4G34160 32.653 196 132 0 88 283 87 282 5.75e-33 129
MsG0580028223.01.T01 AT3G50070 29.605 304 186 5 11 308 20 301 2.49e-31 124
MsG0580028223.01.T01 AT4G03270 31.687 243 148 6 65 296 35 270 2.69e-28 114
MsG0580028223.01.T01 AT4G03270 31.687 243 147 7 65 296 35 269 8.82e-27 110
MsG0580028223.01.T01 AT4G37630 29.752 242 151 5 1 240 1 225 4.08e-26 107
MsG0580028223.01.T01 AT4G37630 29.508 244 151 6 1 240 1 227 1.37e-25 106
MsG0580028223.01.T01 AT4G37630 29.508 244 151 6 1 240 1 227 6.69e-25 105
MsG0580028223.01.T01 AT5G51400 52.632 95 36 3 392 484 135 222 1.10e-23 100
MsG0580028223.01.T01 AT2G45010 39.850 133 72 2 351 483 96 220 7.09e-23 97.8
MsG0580028223.01.T01 AT2G45010 39.850 133 72 2 351 483 50 174 8.18e-23 96.7
MsG0580028223.01.T01 AT5G02110 22.963 270 193 6 55 320 45 303 3.67e-13 71.2
MsG0580028223.01.T01 AT1G77390 29.146 199 118 9 56 246 184 367 2.07e-12 69.3
MsG0580028223.01.T01 AT5G02110 23.887 247 170 6 82 320 38 274 1.38e-11 65.9

Find 94 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACAACCTCATCAATTT+TGG 0.202482 5:+76946685 None:intergenic
TGTCGAAGGTTGCATTTCTT+TGG 0.228315 5:-76940927 MsG0580028223.01.T01:CDS
ACAAAAGAAATATCACTTAA+AGG 0.255348 5:-76940774 MsG0580028223.01.T01:CDS
TTACTCTTCAAAGTTGGATA+TGG 0.269040 5:+76944947 None:intergenic
TGCAAAATTGAATCTCCTAT+TGG 0.289534 5:+76945561 None:intergenic
TTATGTCCTTGTGTACTATT+TGG 0.293293 5:-76941017 MsG0580028223.01.T01:CDS
GTGCATGTTGTGTGCATTGC+TGG 0.319796 5:-76940646 MsG0580028223.01.T01:CDS
GTCGAAGGTTGCATTTCTTT+GGG 0.327155 5:-76940926 MsG0580028223.01.T01:intron
AAATGGAGAATTGGATTTGC+AGG 0.329376 5:-76947440 MsG0580028223.01.T01:CDS
GGAGATGAAGGGACGGCTTT+CGG 0.340872 5:-76940591 MsG0580028223.01.T01:CDS
TTATAGGCTGGACTGTGCTT+TGG 0.345436 5:-76946930 MsG0580028223.01.T01:intron
AGAGCATCCAACACTCCTAT+TGG 0.376719 5:+76945071 None:intergenic
CCTTTCTGCTGTTGACATGC+TGG 0.383313 5:-76946859 MsG0580028223.01.T01:intron
CTTTCTCAGTTTGAACAGTT+AGG 0.401585 5:+76945352 None:intergenic
AAAGTGGTCAATTCAACTCT+TGG 0.419818 5:-76946732 MsG0580028223.01.T01:CDS
GGGTTTATATTTCTCGTGGC+TGG 0.430171 5:-76940834 MsG0580028223.01.T01:CDS
TCTCATTGAATATGTTGAAA+AGG 0.437409 5:-76945319 MsG0580028223.01.T01:intron
CTTGTGCCTCAAACTCCAAT+AGG 0.437823 5:-76945086 MsG0580028223.01.T01:CDS
CTCATAATGAGTACTGTAAG+AGG 0.441691 5:-76945528 MsG0580028223.01.T01:intron
GTGTGCATTGCTGGTTGCAC+TGG 0.444515 5:-76940637 MsG0580028223.01.T01:CDS
AAACTGTTACTCTTCAAAGT+TGG 0.451677 5:+76944941 None:intergenic
TGATACTAAGTACATTGAAA+TGG 0.452661 5:-76945653 MsG0580028223.01.T01:CDS
AACACTCCTATTGGAGTTTG+AGG 0.454151 5:+76945080 None:intergenic
CTGCTAGTGATTATGTCAAT+AGG 0.455696 5:-76947468 MsG0580028223.01.T01:CDS
AACTTTGGAGATGCAGGCTA+TGG 0.456144 5:-76940489 MsG0580028223.01.T01:CDS
CAACAATGAGCATGTAACTT+TGG 0.461491 5:-76940504 MsG0580028223.01.T01:CDS
TCCTCGATCTGTTGATATGC+AGG 0.462271 5:-76946663 MsG0580028223.01.T01:intron
ATGATTCAACAGCTGTCATC+AGG 0.468082 5:-76945149 MsG0580028223.01.T01:CDS
AGTAGACTTCATCTCTTGAA+TGG 0.470294 5:+76940529 None:intergenic
CTTGAGGGGAAGACACTCAT+TGG 0.471943 5:-76940979 MsG0580028223.01.T01:CDS
TCAAGAGCACAGGGAGATGA+AGG 0.472835 5:-76940603 MsG0580028223.01.T01:CDS
GCAGGATGGAATCCATTGAT+TGG 0.473926 5:-76947417 MsG0580028223.01.T01:CDS
GGTGGTGGAACATACTCAAC+TGG 0.477182 5:+76947562 None:intergenic
GCGATTACACTGGTCAAGTT+CGG 0.478509 5:-76940805 MsG0580028223.01.T01:CDS
GCTGAGTGAGGAGAATTTGA+AGG 0.482997 5:-76947521 MsG0580028223.01.T01:CDS
AATGGTGATCAAGTTCCAAT+AGG 0.487509 5:-76945576 MsG0580028223.01.T01:CDS
GATGGAATCCATTGATTGGA+TGG 0.510249 5:-76947413 MsG0580028223.01.T01:CDS
GCATGTAACTTTGGAGATGC+AGG 0.510709 5:-76940495 MsG0580028223.01.T01:CDS
TTATCTAGCTGTACGCTACA+TGG 0.511993 5:-76946889 MsG0580028223.01.T01:CDS
TTACAGTACTCATTATGAGT+TGG 0.513504 5:+76945532 None:intergenic
AGCAATGGAGGTGGCAGCAA+TGG 0.516570 5:+76947541 None:intergenic
GAGAATTGGATTTGCAGGGC+AGG 0.526391 5:-76947435 MsG0580028223.01.T01:CDS
TCAAACTCCAATAGGAGTGT+TGG 0.527142 5:-76945078 MsG0580028223.01.T01:CDS
GAATGATCTTGGTGGTTCAA+TGG 0.530813 5:-76947611 MsG0580028223.01.T01:CDS
GACTTCATCTCTTGAATGGA+AGG 0.531641 5:+76940533 None:intergenic
CTCCCTGTGCTCTTGACACA+AGG 0.532100 5:+76940610 None:intergenic
GTGCCTTGTGTCAAGAGCAC+AGG 0.538053 5:-76940613 MsG0580028223.01.T01:CDS
TCCTCACTCAGCAATGGAGG+TGG 0.540406 5:+76947532 None:intergenic
TCATCTCTTGAATGGAAGGA+GGG 0.547506 5:+76940537 None:intergenic
ACGCAATGTACAAAGCTTGA+GGG 0.550210 5:-76940994 MsG0580028223.01.T01:CDS
GATCACCATTGATCTTGCTA+AGG 0.553277 5:+76945589 None:intergenic
GGAGGTGGCAGCAATGGTGG+TGG 0.554050 5:+76947547 None:intergenic
ATCCATTGATTGGATGGAAA+AGG 0.554319 5:-76947407 MsG0580028223.01.T01:intron
TTCATCTCTTGAATGGAAGG+AGG 0.558790 5:+76940536 None:intergenic
GCATCAGGGCTGTTATGAAG+TGG 0.558972 5:+76944984 None:intergenic
GACGCAATGTACAAAGCTTG+AGG 0.564085 5:-76940995 MsG0580028223.01.T01:CDS
TTAGATGAGAATGATCTTGG+TGG 0.564857 5:-76947619 MsG0580028223.01.T01:CDS
CAACAGCTGTCATCAGGTAG+TGG 0.565018 5:-76945143 MsG0580028223.01.T01:CDS
GGAGATGCAGGCTATGGGAT+AGG 0.566278 5:-76940483 None:intergenic
TTCTCCTCACTCAGCAATGG+AGG 0.566829 5:+76947529 None:intergenic
AAGGTACACAAGGCCACAGA+AGG 0.566842 5:-76940755 MsG0580028223.01.T01:CDS
GTGAGGGTTTATATTTCTCG+TGG 0.568607 5:-76940838 MsG0580028223.01.T01:intron
AAATTCTCCTCACTCAGCAA+TGG 0.571090 5:+76947526 None:intergenic
ACAGCTGCTGCAATTTCTGA+TGG 0.571571 5:+76945405 None:intergenic
AATGGAGGTGGCAGCAATGG+TGG 0.577757 5:+76947544 None:intergenic
ATTGGATTTGCAGGGCAGGA+TGG 0.578670 5:-76947431 MsG0580028223.01.T01:CDS
ATTACTAGTATCTGTGGAGG+TGG 0.579868 5:-76945379 MsG0580028223.01.T01:CDS
GCCACCTCCATTGCTGAGTG+AGG 0.584775 5:-76947533 MsG0580028223.01.T01:CDS
ATTGGAGTTTGAGGCACAAG+AGG 0.585033 5:+76945089 None:intergenic
AGGTAGTGGTTCTTCTGCAA+AGG 0.585965 5:-76945129 MsG0580028223.01.T01:CDS
CCAGCATGTCAACAGCAGAA+AGG 0.586707 5:+76946859 None:intergenic
CTATTGACATAATCACTAGC+AGG 0.587604 5:+76947469 None:intergenic
AATGGAGAATTGGATTTGCA+GGG 0.587750 5:-76947439 MsG0580028223.01.T01:CDS
GACATAATTTAACCCTTCTG+TGG 0.589359 5:+76940742 None:intergenic
TGTCATCACTATTGTAGCTG+AGG 0.590736 5:+76945045 None:intergenic
ACTTTGGAGATGCAGGCTAT+GGG 0.591373 5:-76940488 MsG0580028223.01.T01:CDS
TGTCTCAGAAGGAAAGAAAG+TGG 0.596410 5:-76946748 MsG0580028223.01.T01:intron
TGCCTTGTGTCAAGAGCACA+GGG 0.601598 5:-76940612 MsG0580028223.01.T01:CDS
CGCAATGTACAAAGCTTGAG+GGG 0.612384 5:-76940993 MsG0580028223.01.T01:CDS
GGGAAGACACTCATTGGACT+AGG 0.614591 5:-76940973 MsG0580028223.01.T01:CDS
TGTTGCATTACTAGTATCTG+TGG 0.621047 5:-76945385 MsG0580028223.01.T01:CDS
AGCACAGGGAGATGAAGGGA+CGG 0.629454 5:-76940598 MsG0580028223.01.T01:CDS
AAAATGGCATGACAAATGCA+TGG 0.642333 5:+76940950 None:intergenic
GCACACAACATGCACAACAA+AGG 0.644804 5:+76940654 None:intergenic
CAAGAGCACAGGGAGATGAA+GGG 0.660978 5:-76940602 MsG0580028223.01.T01:CDS
TCTGGCAGCCAAAATTGATG+AGG 0.661753 5:-76946693 MsG0580028223.01.T01:CDS
ATATCACTTAAAGGTACACA+AGG 0.665076 5:-76940765 MsG0580028223.01.T01:CDS
ACCTGCATATCAACAGATCG+AGG 0.665183 5:+76946662 None:intergenic
TGCATTACTAGTATCTGTGG+AGG 0.668966 5:-76945382 MsG0580028223.01.T01:CDS
TTGCGTCCAAATAGTACACA+AGG 0.670043 5:+76941011 None:intergenic
TGAAGTGGAGAATCTGCAAG+AGG 0.676218 5:+76944999 None:intergenic
AGGTACACAAGGCCACAGAA+GGG 0.689613 5:-76940754 MsG0580028223.01.T01:intron
CTGGTGTGTAGCGATTACAC+TGG 0.736128 5:-76940815 MsG0580028223.01.T01:CDS
ACAGCTAGATAAATACAGAG+AGG 0.759447 5:+76946900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATTGAATTCAATTA+TGG - Chr5:76945436-76945455 MsG0580028223.01.T01:intron 10.0%
!!! TTAATCATTTTCTAATTTAT+GGG - Chr5:76942929-76942948 MsG0580028223.01.T01:intron 10.0%
!! AACTAAAAATAATTGGATAT+AGG + Chr5:76946296-76946315 None:intergenic 15.0%
!! AATAATATAATTGAATGTAC+AGG + Chr5:76942286-76942305 None:intergenic 15.0%
!! ATTAAAATTAGAAAATTGTG+TGG - Chr5:76943795-76943814 MsG0580028223.01.T01:intron 15.0%
!! CAAAAAAAAAAAGAGATTAA+AGG + Chr5:76940920-76940939 None:intergenic 15.0%
!! TATTATATAACTAACAACAA+AGG + Chr5:76946323-76946342 None:intergenic 15.0%
!!! AGTTTGTAAATGTTTTAAAT+CGG - Chr5:76941553-76941572 MsG0580028223.01.T01:intron 15.0%
!!! CAATAAATTTTCTTTAATCT+TGG - Chr5:76940941-76940960 MsG0580028223.01.T01:CDS 15.0%
!!! CTTAATCATTTTCTAATTTA+TGG - Chr5:76942928-76942947 MsG0580028223.01.T01:intron 15.0%
!!! TAGTCAAAATTTAATGTTTT+TGG + Chr5:76946598-76946617 None:intergenic 15.0%
!!! TATATCCAATTATTTTTAGT+TGG - Chr5:76946295-76946314 MsG0580028223.01.T01:intron 15.0%
!!! TCTTTAGCTTTATTTTTTTA+CGG + Chr5:76946490-76946509 None:intergenic 15.0%
!!! TTAGAATTTTCTAAAGTAAT+AGG + Chr5:76945090-76945109 None:intergenic 15.0%
!!! TTCAAACTAGTTTAAATTAA+AGG - Chr5:76946635-76946654 MsG0580028223.01.T01:intron 15.0%
!!! TTTAAGATTTAAGAATTGTT+TGG - Chr5:76944578-76944597 MsG0580028223.01.T01:intron 15.0%
!! AAAAAATTCCAAGGAATATA+AGG - Chr5:76946986-76947005 MsG0580028223.01.T01:intron 20.0%
!! AATAAACATGTATTTAGAGA+TGG - Chr5:76944083-76944102 MsG0580028223.01.T01:intron 20.0%
!! AATAATAGAACAAAAACTCT+AGG + Chr5:76943402-76943421 None:intergenic 20.0%
!! ACAAAAGAAATATCACTTAA+AGG - Chr5:76947386-76947405 MsG0580028223.01.T01:intron 20.0%
!! ACAATCAAACAAATTAATGT+GGG + Chr5:76940784-76940803 None:intergenic 20.0%
!! ACATAGACAATAAAACTAAA+AGG - Chr5:76943442-76943461 MsG0580028223.01.T01:intron 20.0%
!! AGCTTTCAATATAAAAATGT+TGG + Chr5:76941893-76941912 None:intergenic 20.0%
!! ATAAACATGTATTTAGAGAT+GGG - Chr5:76944084-76944103 MsG0580028223.01.T01:intron 20.0%
!! ATAGACAATAAAACTAAAAG+GGG - Chr5:76943444-76943463 MsG0580028223.01.T01:intron 20.0%
!! ATCTTTCATTTAACTAAAAC+TGG + Chr5:76944559-76944578 None:intergenic 20.0%
!! ATTTGCTTGAATATAATCTA+TGG - Chr5:76941079-76941098 MsG0580028223.01.T01:intron 20.0%
!! CATAGACAATAAAACTAAAA+GGG - Chr5:76943443-76943462 MsG0580028223.01.T01:intron 20.0%
!! GAAAAATGAAAGAATGTAAA+AGG + Chr5:76947102-76947121 None:intergenic 20.0%
!! TCAATCATACAAAAATGAAA+TGG + Chr5:76941194-76941213 None:intergenic 20.0%
!! TCTTACAAAATCTTATCATA+GGG - Chr5:76943762-76943781 MsG0580028223.01.T01:intron 20.0%
!! TTAATGATCTTAGATTTGAA+AGG - Chr5:76940997-76941016 MsG0580028223.01.T01:CDS 20.0%
!! TTTGTTCTATTATTAAGTGA+GGG - Chr5:76943408-76943427 MsG0580028223.01.T01:intron 20.0%
!!! AAAATTTTGATGTTCAATCA+AGG - Chr5:76945958-76945977 MsG0580028223.01.T01:intron 20.0%
!!! AATATTTTTGTTATACTCCT+TGG - Chr5:76945811-76945830 MsG0580028223.01.T01:intron 20.0%
!!! AATCTGAGTAAGTTTTATTA+TGG - Chr5:76945577-76945596 MsG0580028223.01.T01:CDS 20.0%
!!! AGACATCTAACTTTTTTTAT+TGG + Chr5:76942886-76942905 None:intergenic 20.0%
!!! ATAACAATATTGATAACATC+AGG + Chr5:76944985-76945004 None:intergenic 20.0%
!!! ATTTAAGAATTGTTTGGAAT+GGG - Chr5:76944584-76944603 MsG0580028223.01.T01:intron 20.0%
!!! CTAGGTCAATAATATAATTT+TGG + Chr5:76944030-76944049 None:intergenic 20.0%
!!! GTTTGTAAATGTTTTAAATC+GGG - Chr5:76941554-76941573 MsG0580028223.01.T01:intron 20.0%
!!! TAAGTGATATTTCTTTTGTA+AGG + Chr5:76947385-76947404 None:intergenic 20.0%
!!! TACTTAATGCATTTAGATTT+TGG - Chr5:76946082-76946101 MsG0580028223.01.T01:intron 20.0%
!!! TATTTTCTTGTTTCCTTTAT+TGG + Chr5:76943272-76943291 None:intergenic 20.0%
!!! TCTTTGTTCTATTTTACAAA+TGG - Chr5:76943539-76943558 MsG0580028223.01.T01:intron 20.0%
!!! TGGTTATAATTTTGATTTCT+AGG - Chr5:76943815-76943834 MsG0580028223.01.T01:intron 20.0%
!!! TTTATTTTCTTTCGATATAG+AGG - Chr5:76946704-76946723 MsG0580028223.01.T01:CDS 20.0%
!!! TTTTGTTCTATTATTAAGTG+AGG - Chr5:76943407-76943426 MsG0580028223.01.T01:intron 20.0%
! AAATCAAGAAACCTAAAAAG+AGG + Chr5:76945397-76945416 None:intergenic 25.0%
! AAGCAAATCAATTTCAACAA+TGG + Chr5:76941067-76941086 None:intergenic 25.0%
! AAGGAAACAAGAAAATAGAT+AGG - Chr5:76943275-76943294 MsG0580028223.01.T01:intron 25.0%
! AATATAATTGAATGTACAGG+TGG + Chr5:76942283-76942302 None:intergenic 25.0%
! AATGTCCTACAAAATGATAA+TGG - Chr5:76943726-76943745 MsG0580028223.01.T01:intron 25.0%
! AATTATTATGGTCACATCAA+AGG + Chr5:76942174-76942193 None:intergenic 25.0%
! AATTGATGAAGTGAAGAAAA+TGG - Chr5:76941330-76941349 MsG0580028223.01.T01:intron 25.0%
! ACAAAAACTATACACCAAAT+TGG - Chr5:76943860-76943879 MsG0580028223.01.T01:intron 25.0%
! ACAAAAGTAATCTTCATTGT+TGG - Chr5:76944412-76944431 MsG0580028223.01.T01:intron 25.0%
! AGAAAATAGATAGGGAAAAA+AGG - Chr5:76943284-76943303 MsG0580028223.01.T01:intron 25.0%
! AGAATCAATTATACACACAA+AGG - Chr5:76946507-76946526 MsG0580028223.01.T01:intron 25.0%
! AGACATGAAAAATCAAAACT+TGG + Chr5:76940496-76940515 None:intergenic 25.0%
! AGATAGTAGTACAACAAATA+TGG - Chr5:76946917-76946936 MsG0580028223.01.T01:CDS 25.0%
! AGCAAATTGTTGAGAATATT+TGG - Chr5:76947020-76947039 MsG0580028223.01.T01:intron 25.0%
! AGGAAACAAGAAAATAGATA+GGG - Chr5:76943276-76943295 MsG0580028223.01.T01:intron 25.0%
! AGGTACCAACTAAAAATAAT+TGG + Chr5:76946303-76946322 None:intergenic 25.0%
! ATCAAGTTAGTATCTAAGTT+AGG + Chr5:76945363-76945382 None:intergenic 25.0%
! ATGATCAATGTTAACATTGT+TGG - Chr5:76943940-76943959 MsG0580028223.01.T01:intron 25.0%
! CAAGAATACAAAAAATTCCA+AGG - Chr5:76946977-76946996 MsG0580028223.01.T01:intron 25.0%
! CACAATCAAACAAATTAATG+TGG + Chr5:76940785-76940804 None:intergenic 25.0%
! CATTGCCAAATTATAAAGTT+AGG + Chr5:76945039-76945058 None:intergenic 25.0%
! GATTTAAGAATTGTTTGGAA+TGG - Chr5:76944583-76944602 MsG0580028223.01.T01:intron 25.0%
! GTCTTACAAAATCTTATCAT+AGG - Chr5:76943761-76943780 MsG0580028223.01.T01:intron 25.0%
! GTTAAAAGAAACTCAATGAA+TGG + Chr5:76944186-76944205 None:intergenic 25.0%
! GTTGGTATTATGTTAGTATT+GGG - Chr5:76943958-76943977 MsG0580028223.01.T01:intron 25.0%
! TAGACAACTAATCAAATGTT+GGG + Chr5:76946569-76946588 None:intergenic 25.0%
! TAGACAATAAAACTAAAAGG+GGG - Chr5:76943445-76943464 MsG0580028223.01.T01:intron 25.0%
! TATAACCAATTGTAAAAACC+AGG + Chr5:76944614-76944633 None:intergenic 25.0%
! TCTCATTGAATATGTTGAAA+AGG - Chr5:76942841-76942860 MsG0580028223.01.T01:intron 25.0%
! TCTTCTTAAACCTTTATCTT+AGG - Chr5:76945469-76945488 MsG0580028223.01.T01:intron 25.0%
! TGATACTAAGTACATTGAAA+TGG - Chr5:76942507-76942526 MsG0580028223.01.T01:intron 25.0%
! TGTTGGTATTATGTTAGTAT+TGG - Chr5:76943957-76943976 MsG0580028223.01.T01:intron 25.0%
! TTAGACAACTAATCAAATGT+TGG + Chr5:76946570-76946589 None:intergenic 25.0%
! TTAGTGAATAAGACAACTTT+AGG - Chr5:76946852-76946871 MsG0580028223.01.T01:intron 25.0%
! TTATAGCAAAGAGAGAAATA+AGG - Chr5:76943354-76943373 MsG0580028223.01.T01:intron 25.0%
! TTATATTATTGACCTAGATG+TGG - Chr5:76944033-76944052 MsG0580028223.01.T01:intron 25.0%
! TTGCTTGATCAATGAAAATA+TGG + Chr5:76944741-76944760 None:intergenic 25.0%
! TTGGTATTATGTTAGTATTG+GGG - Chr5:76943959-76943978 MsG0580028223.01.T01:intron 25.0%
! TTTGCTTGTCAACAATTAAA+TGG - Chr5:76943643-76943662 MsG0580028223.01.T01:intron 25.0%
!! AATGAGATGATAATGTGAAA+TGG - Chr5:76942691-76942710 MsG0580028223.01.T01:intron 25.0%
!! ACGCCTTAAATTTAAAATGT+TGG + Chr5:76941592-76941611 None:intergenic 25.0%
!! ATTTTAGATGAGAATGATCT+TGG - Chr5:76940538-76940557 MsG0580028223.01.T01:CDS 25.0%
!! CATGTTTTCCATTACAATTA+AGG + Chr5:76944158-76944177 None:intergenic 25.0%
!! CTTAATTGTAATGGAAAACA+TGG - Chr5:76944156-76944175 MsG0580028223.01.T01:intron 25.0%
!! CTTTACCATTATCATTTTGT+AGG + Chr5:76943734-76943753 None:intergenic 25.0%
!! GCACCAACATTTTAAATTTA+AGG - Chr5:76941586-76941605 MsG0580028223.01.T01:intron 25.0%
!! TATATCTATCTACATTTTGC+AGG - Chr5:76942965-76942984 MsG0580028223.01.T01:intron 25.0%
!! TCATTTTCTAATTTATGGGA+TGG - Chr5:76942933-76942952 MsG0580028223.01.T01:intron 25.0%
!! TGTTGTACTACTATCTTTTT+GGG + Chr5:76946913-76946932 None:intergenic 25.0%
!! TTGTTGTACTACTATCTTTT+TGG + Chr5:76946914-76946933 None:intergenic 25.0%
!! TTTAAGAATTGTTTGGAATG+GGG - Chr5:76944585-76944604 MsG0580028223.01.T01:intron 25.0%
!!! AACTCATGCATCTTTTTTAT+AGG - Chr5:76941214-76941233 MsG0580028223.01.T01:intron 25.0%
!!! AACTTTTTTTTTTCTGCAGA+TGG - Chr5:76942433-76942452 MsG0580028223.01.T01:intron 25.0%
!!! ATATATAAGAAGTACTTGAG+AGG + Chr5:76944217-76944236 None:intergenic 25.0%
!!! ATGATAATGTGAAATGGTTT+TGG - Chr5:76942697-76942716 MsG0580028223.01.T01:intron 25.0%
!!! ATTTTTTTACGGTTAACCAT+TGG + Chr5:76946479-76946498 None:intergenic 25.0%
!!! CTAACTTTTTTTATTGGCAT+TGG + Chr5:76942880-76942899 None:intergenic 25.0%
!!! CTTGGAATTTTTTGTATTCT+TGG + Chr5:76946979-76946998 None:intergenic 25.0%
!!! GAAACAAGGTTTATTTTTGA+AGG - Chr5:76944331-76944350 MsG0580028223.01.T01:intron 25.0%
!!! GAAATATTTTTTCATTGAGC+AGG + Chr5:76944248-76944267 None:intergenic 25.0%
!!! GTTTCTTGATTTGTGTTTTT+AGG - Chr5:76945405-76945424 MsG0580028223.01.T01:CDS 25.0%
!!! TATATAAGAAGTACTTGAGA+GGG + Chr5:76944216-76944235 None:intergenic 25.0%
!!! TATTTTTGAAGGAAGAAACA+AGG - Chr5:76944342-76944361 MsG0580028223.01.T01:intron 25.0%
!!! TGTCTTTAATTTTACATGTG+AGG - Chr5:76942396-76942415 MsG0580028223.01.T01:intron 25.0%
!!! TTGAATTTTTCAACCATGAT+TGG - Chr5:76945007-76945026 MsG0580028223.01.T01:CDS 25.0%
AAAAAGTCAATGTAGGAGAA+AGG + Chr5:76942551-76942570 None:intergenic 30.0%
AAAACTATACACCAAATTGG+TGG - Chr5:76943863-76943882 MsG0580028223.01.T01:intron 30.0%
AAACTATACACCAAATTGGT+GGG - Chr5:76943864-76943883 MsG0580028223.01.T01:intron 30.0%
AAACTGTTACTCTTCAAAGT+TGG + Chr5:76943222-76943241 None:intergenic 30.0%
AAGTTAGTATCTAAGTTAGG+TGG + Chr5:76945360-76945379 None:intergenic 30.0%
AATTCTGCAATCATAAACAG+AGG + Chr5:76947484-76947503 None:intergenic 30.0%
AATTGTGCTTCATTTCTCAA+GGG - Chr5:76945125-76945144 MsG0580028223.01.T01:CDS 30.0%
ACCATGCTTAAAAAGAAACA+AGG - Chr5:76944317-76944336 MsG0580028223.01.T01:intron 30.0%
ACTATGTCTATCTCAATTGT+TGG - Chr5:76944633-76944652 MsG0580028223.01.T01:intron 30.0%
ATAATTCAGATCATAACCAG+TGG + Chr5:76941388-76941407 None:intergenic 30.0%
ATAGCTTGACAGAACAATAA+CGG + Chr5:76943599-76943618 None:intergenic 30.0%
ATCAAGCACATAAACAAACA+TGG + Chr5:76941740-76941759 None:intergenic 30.0%
ATGAAGCACATAAACAAACA+CGG + Chr5:76942044-76942063 None:intergenic 30.0%
ATGTTAATCATACCACATCT+AGG + Chr5:76944048-76944067 None:intergenic 30.0%
CAAATCAAGTACAATTTGAG+AGG + Chr5:76947069-76947088 None:intergenic 30.0%
CACATGTATCAATATCATGT+CGG + Chr5:76941630-76941649 None:intergenic 30.0%
CATGAAAAATCAAAACTTGG+TGG + Chr5:76940493-76940512 None:intergenic 30.0%
CCATGTTCTTTCAAAAGAAT+AGG - Chr5:76944946-76944965 MsG0580028223.01.T01:intron 30.0%
CTAAACTCTAAACACTTACT+CGG + Chr5:76943679-76943698 None:intergenic 30.0%
CTATGTCTATCTCAATTGTT+GGG - Chr5:76944634-76944653 MsG0580028223.01.T01:intron 30.0%
CTTTATTGGTATTCCTTTGA+GGG + Chr5:76943258-76943277 None:intergenic 30.0%
GAGTGAAATCTTAAACATCT+TGG - Chr5:76944516-76944535 MsG0580028223.01.T01:intron 30.0%
GTATGTCTCCTTAATTGTAA+TGG - Chr5:76944147-76944166 MsG0580028223.01.T01:intron 30.0%
TAATTGTGCTTCATTTCTCA+AGG - Chr5:76945124-76945143 MsG0580028223.01.T01:CDS 30.0%
TACAGAGCATGTATAAGAAT+GGG - Chr5:76946177-76946196 MsG0580028223.01.T01:intron 30.0%
TACGAATTATCGATAATCGA+TGG - Chr5:76944712-76944731 MsG0580028223.01.T01:intron 30.0%
TATGTCAATAGGCTGAAAAA+TGG - Chr5:76940703-76940722 MsG0580028223.01.T01:intron 30.0%
TGCAAAATTGAATCTCCTAT+TGG + Chr5:76942602-76942621 None:intergenic 30.0%
TGGCACCTAACTTTATAATT+TGG - Chr5:76945031-76945050 MsG0580028223.01.T01:CDS 30.0%
TGTATAAATGTCGTTCTACA+TGG + Chr5:76947443-76947462 None:intergenic 30.0%
TTACAGTACTCATTATGAGT+TGG + Chr5:76942631-76942650 None:intergenic 30.0%
TTACTCTTCAAAGTTGGATA+TGG + Chr5:76943216-76943235 None:intergenic 30.0%
TTATGTCCTTGTGTACTATT+TGG - Chr5:76947143-76947162 MsG0580028223.01.T01:intron 30.0%
TTTAAGCATGGTCTAATAGT+TGG + Chr5:76944309-76944328 None:intergenic 30.0%
TTTACGTGAACCTAAGATAA+AGG + Chr5:76945482-76945501 None:intergenic 30.0%
TTTATTGGTATTCCTTTGAG+GGG + Chr5:76943257-76943276 None:intergenic 30.0%
! AACAACAACCTCATCAATTT+TGG + Chr5:76941478-76941497 None:intergenic 30.0%
! ATATCACTTAAAGGTACACA+AGG - Chr5:76947395-76947414 MsG0580028223.01.T01:intron 30.0%
! ATATTGAGAGCTTTCCATTT+TGG - Chr5:76944811-76944830 MsG0580028223.01.T01:intron 30.0%
! ATTATTAAGCCCTTTTCCAA+TGG - Chr5:76946460-76946479 MsG0580028223.01.T01:intron 30.0%
! GAATTATTTCTTGTCTCAGA+AGG - Chr5:76941401-76941420 MsG0580028223.01.T01:intron 30.0%
! TAGGACATTTCTTTTTGTTG+TGG + Chr5:76943715-76943734 None:intergenic 30.0%
! TTAAGAATTGTTTGGAATGG+GGG - Chr5:76944586-76944605 MsG0580028223.01.T01:intron 30.0%
! TTTTTCCTTAGCAAGATCAA+TGG - Chr5:76942566-76942585 MsG0580028223.01.T01:intron 30.0%
!! ACCTTGTTTCTTTTTAAGCA+TGG + Chr5:76944321-76944340 None:intergenic 30.0%
!! AGGACATTTCTTTTTGTTGT+GGG + Chr5:76943714-76943733 None:intergenic 30.0%
!! ATATAAGAAGTACTTGAGAG+GGG + Chr5:76944215-76944234 None:intergenic 30.0%
!! ATTCTTTCATTTTTCACTGC+AGG - Chr5:76947107-76947126 MsG0580028223.01.T01:intron 30.0%
!! ATTTTTCAACCATGATTGGT+TGG - Chr5:76945011-76945030 MsG0580028223.01.T01:CDS 30.0%
!! CCTATTCTTTTGAAAGAACA+TGG + Chr5:76944949-76944968 None:intergenic 30.0%
!! CTTTGAAGAGTAACAGTTTT+TGG - Chr5:76943223-76943242 MsG0580028223.01.T01:intron 30.0%
!! TGATCATTTTTCCAGAGTTT+TGG - Chr5:76944777-76944796 MsG0580028223.01.T01:intron 30.0%
!! TGTTCTAAAGACACTTGTTA+AGG + Chr5:76945691-76945710 None:intergenic 30.0%
!! TGTTGAAAAGGTACTAATGA+TGG - Chr5:76942853-76942872 MsG0580028223.01.T01:intron 30.0%
!! TTTTTGTTATACTCCTTGGA+AGG - Chr5:76945815-76945834 MsG0580028223.01.T01:intron 30.0%
AAAATGGCATGACAAATGCA+TGG + Chr5:76947213-76947232 None:intergenic 35.0%
AAAGTGGTCAATTCAACTCT+TGG - Chr5:76941428-76941447 MsG0580028223.01.T01:intron 35.0%
AAATGGAGAATTGGATTTGC+AGG - Chr5:76940720-76940739 MsG0580028223.01.T01:intron 35.0%
AATAAAACTAAAAGGGGGCA+TGG - Chr5:76943450-76943469 MsG0580028223.01.T01:intron 35.0%
AATGCAACCTTCGACAAAAA+TGG + Chr5:76947229-76947248 None:intergenic 35.0%
AATGGAGAATTGGATTTGCA+GGG - Chr5:76940721-76940740 MsG0580028223.01.T01:intron 35.0%
AATGGTGATCAAGTTCCAAT+AGG - Chr5:76942584-76942603 MsG0580028223.01.T01:intron 35.0%
AATTGTTGACAAGCAAACTG+TGG + Chr5:76943640-76943659 None:intergenic 35.0%
ACAGCTAGATAAATACAGAG+AGG + Chr5:76941263-76941282 None:intergenic 35.0%
ACATCATCAATGTAGGCTAT+TGG + Chr5:76946953-76946972 None:intergenic 35.0%
ACTAACAAGACACTAACATG+TGG - Chr5:76941685-76941704 MsG0580028223.01.T01:intron 35.0%
AGTAGACTTCATCTCTTGAA+TGG + Chr5:76947634-76947653 None:intergenic 35.0%
AGTAGTATTACCCACCAATT+TGG + Chr5:76943877-76943896 None:intergenic 35.0%
ATACATGTTTGTGCCTTCTA+AGG + Chr5:76945846-76945865 None:intergenic 35.0%
ATTGATTGGATGGAAAAGGT+GGG - Chr5:76940757-76940776 MsG0580028223.01.T01:CDS 35.0%
CAACAATGAGCATGTAACTT+TGG - Chr5:76947656-76947675 MsG0580028223.01.T01:CDS 35.0%
CACAAAAGACTATCACAAGT+TGG - Chr5:76945901-76945920 MsG0580028223.01.T01:intron 35.0%
CATTCTTATACATGCTCTGT+AGG + Chr5:76946178-76946197 None:intergenic 35.0%
CCTCAAAGGAATACCAATAA+AGG - Chr5:76943256-76943275 MsG0580028223.01.T01:intron 35.0%
CCTTTATTGGTATTCCTTTG+AGG + Chr5:76943259-76943278 None:intergenic 35.0%
CGACATGATATTGATACATG+TGG - Chr5:76941628-76941647 MsG0580028223.01.T01:intron 35.0%
CTACAGAGCATGTATAAGAA+TGG - Chr5:76946176-76946195 MsG0580028223.01.T01:intron 35.0%
CTACTCCAATTTGTATGAGT+GGG - Chr5:76946814-76946833 MsG0580028223.01.T01:intron 35.0%
CTAGTTCACCTTATATTCCT+TGG + Chr5:76946997-76947016 None:intergenic 35.0%
CTATTGACATAATCACTAGC+AGG + Chr5:76940694-76940713 None:intergenic 35.0%
CTGCTAGTGATTATGTCAAT+AGG - Chr5:76940692-76940711 MsG0580028223.01.T01:intron 35.0%
CTTTCTCAGTTTGAACAGTT+AGG + Chr5:76942811-76942830 None:intergenic 35.0%
GAAAGCAATGCACATAACAT+TGG + Chr5:76940898-76940917 None:intergenic 35.0%
GACATAATTTAACCCTTCTG+TGG + Chr5:76947421-76947440 None:intergenic 35.0%
GCTAAGGAAAAAGTCAATGT+AGG + Chr5:76942558-76942577 None:intergenic 35.0%
GGATATGAAGACTTTCACAT+TGG - Chr5:76945979-76945998 MsG0580028223.01.T01:intron 35.0%
GTTGTATGATGATCTTCCAA+CGG + Chr5:76945227-76945246 None:intergenic 35.0%
TAATTCCTGGCATTAATCCA+TGG - Chr5:76947283-76947302 MsG0580028223.01.T01:intron 35.0%
TACGGTTAACCATTGGAAAA+GGG + Chr5:76946472-76946491 None:intergenic 35.0%
TAGGCTGAAAAATGGAGAAT+TGG - Chr5:76940711-76940730 MsG0580028223.01.T01:intron 35.0%
TATGAAGTGAATCGTACCTT+TGG + Chr5:76945326-76945345 None:intergenic 35.0%
TCAAGAAACCTAAAAAGAGG+AGG + Chr5:76945394-76945413 None:intergenic 35.0%
TCATGTGAACATCTCCAAAA+TGG + Chr5:76944828-76944847 None:intergenic 35.0%
TCTACTCCAATTTGTATGAG+TGG - Chr5:76946813-76946832 MsG0580028223.01.T01:intron 35.0%
TGGCTTCATCAAAATCATCA+AGG + Chr5:76944929-76944948 None:intergenic 35.0%
TGTTGCATTACTAGTATCTG+TGG - Chr5:76942775-76942794 MsG0580028223.01.T01:intron 35.0%
TTACGGTTAACCATTGGAAA+AGG + Chr5:76946473-76946492 None:intergenic 35.0%
TTAGATGAGAATGATCTTGG+TGG - Chr5:76940541-76940560 MsG0580028223.01.T01:CDS 35.0%
TTCCACTATATAGCCTCTTA+GGG - Chr5:76944122-76944141 MsG0580028223.01.T01:intron 35.0%
TTGGAAGGAAAATCCTTAGA+AGG - Chr5:76945830-76945849 MsG0580028223.01.T01:intron 35.0%
TTGGCTAACATCATCAATGT+AGG + Chr5:76946960-76946979 None:intergenic 35.0%
TTTACATGTGAGGTAGTGAA+TGG - Chr5:76942406-76942425 MsG0580028223.01.T01:intron 35.0%
TTTCCACTATATAGCCTCTT+AGG - Chr5:76944121-76944140 MsG0580028223.01.T01:intron 35.0%
TTTGTGGCTATATATGCACT+AGG - Chr5:76944459-76944478 MsG0580028223.01.T01:intron 35.0%
! ATAAAACTAAAAGGGGGCAT+GGG - Chr5:76943451-76943470 MsG0580028223.01.T01:intron 35.0%
! ATCCATTGATTGGATGGAAA+AGG - Chr5:76940753-76940772 MsG0580028223.01.T01:intron 35.0%
! CGAGTAAGTGTTTAGAGTTT+AGG - Chr5:76943677-76943696 MsG0580028223.01.T01:intron 35.0%
! CTCATAATGAGTACTGTAAG+AGG - Chr5:76942632-76942651 MsG0580028223.01.T01:intron 35.0%
! CTCTGGAAAAATGATCAACA+AGG + Chr5:76944774-76944793 None:intergenic 35.0%
! CTTATCTTCCTCCTCTTTTT+AGG - Chr5:76945383-76945402 MsG0580028223.01.T01:CDS 35.0%
! TGTTAGTGTCTTGTTAGTGT+TGG + Chr5:76941683-76941702 None:intergenic 35.0%
! TTATTGGTATTCCTTTGAGG+GGG + Chr5:76943256-76943275 None:intergenic 35.0%
! TTTTCTTGCGTTTAGCATCA+GGG + Chr5:76943193-76943212 None:intergenic 35.0%
!! GGCTTTTTGTTGCTTATATC+TGG - Chr5:76941449-76941468 MsG0580028223.01.T01:intron 35.0%
!! TAATTTTGGTGACTTGAGTG+AGG + Chr5:76944016-76944035 None:intergenic 35.0%
!! TATAAGAAGTACTTGAGAGG+GGG + Chr5:76944214-76944233 None:intergenic 35.0%
!! TCATTTTTCCAGAGTTTTGG+TGG - Chr5:76944780-76944799 MsG0580028223.01.T01:intron 35.0%
!! TTCTAAGGATTTTCCTTCCA+AGG + Chr5:76945831-76945850 None:intergenic 35.0%
!! TTTTGGAGATGTTCACATGA+AGG - Chr5:76944828-76944847 MsG0580028223.01.T01:intron 35.0%
!! TTTTGTTGTGGGTGTGAAAA+TGG + Chr5:76943703-76943722 None:intergenic 35.0%
!!! CATGCATCTTTTTTATAGGC+TGG - Chr5:76941218-76941237 MsG0580028223.01.T01:intron 35.0%
AAATTCTCCTCACTCAGCAA+TGG + Chr5:76940637-76940656 None:intergenic 40.0%
AACACTCCTATTGGAGTTTG+AGG + Chr5:76943083-76943102 None:intergenic 40.0%
AACCCCTCACTCAAAATGTT+CGG - Chr5:76944681-76944700 MsG0580028223.01.T01:intron 40.0%
AATGAAGTCAAGTCCTGCAT+TGG + Chr5:76942726-76942745 None:intergenic 40.0%
ACAATGGGTCATGCTCATAT+AGG + Chr5:76945300-76945319 None:intergenic 40.0%
ACCAGTGGCAAACAACATAA+TGG + Chr5:76941373-76941392 None:intergenic 40.0%
ACGCAATGTACAAAGCTTGA+GGG - Chr5:76947166-76947185 MsG0580028223.01.T01:intron 40.0%
ACTAACAGGACACTGACATA+TGG - Chr5:76941989-76942008 MsG0580028223.01.T01:intron 40.0%
ACTGCAAGGAATGAAGTTTG+TGG - Chr5:76944443-76944462 MsG0580028223.01.T01:intron 40.0%
ATCAACTTCCACCAAAACTC+TGG + Chr5:76944791-76944810 None:intergenic 40.0%
ATCGACATGACATTGACACA+TGG - Chr5:76941928-76941947 MsG0580028223.01.T01:intron 40.0%
ATCGTACCTTTGGTTGACAA+TGG + Chr5:76945316-76945335 None:intergenic 40.0%
ATGATTCAACAGCTGTCATC+AGG - Chr5:76943011-76943030 MsG0580028223.01.T01:intron 40.0%
ATTACTAGTATCTGTGGAGG+TGG - Chr5:76942781-76942800 MsG0580028223.01.T01:intron 40.0%
GACTTCATCTCTTGAATGGA+AGG + Chr5:76947630-76947649 None:intergenic 40.0%
GATCACCATTGATCTTGCTA+AGG + Chr5:76942574-76942593 None:intergenic 40.0%
GTCGAAGGTTGCATTTCTTT+GGG - Chr5:76947234-76947253 MsG0580028223.01.T01:intron 40.0%
GTGAGGGTTTATATTTCTCG+TGG - Chr5:76947322-76947341 MsG0580028223.01.T01:intron 40.0%
GTGGAGTGATAAAAAAGTCG+AGG + Chr5:76943992-76944011 None:intergenic 40.0%
GTGTTTGCTCTTGCAAACAA+TGG - Chr5:76946133-76946152 MsG0580028223.01.T01:intron 40.0%
TAGACACGAATCATGCACAA+TGG - Chr5:76946341-76946360 MsG0580028223.01.T01:intron 40.0%
TCATCTCTTGAATGGAAGGA+GGG + Chr5:76947626-76947645 None:intergenic 40.0%
TCGACATGACATTGACACAT+GGG - Chr5:76941929-76941948 MsG0580028223.01.T01:intron 40.0%
TCGTACCTTTGGTTGACAAT+GGG + Chr5:76945315-76945334 None:intergenic 40.0%
TGCATTACTAGTATCTGTGG+AGG - Chr5:76942778-76942797 MsG0580028223.01.T01:intron 40.0%
TGCTACCCACTCATACAAAT+TGG + Chr5:76946822-76946841 None:intergenic 40.0%
TGTCAGTGTCCTGTTAGTAT+TGG + Chr5:76941987-76942006 None:intergenic 40.0%
TGTCATCACTATTGTAGCTG+AGG + Chr5:76943118-76943137 None:intergenic 40.0%
TGTCGAAGGTTGCATTTCTT+TGG - Chr5:76947233-76947252 MsG0580028223.01.T01:intron 40.0%
TGTCTCAGAAGGAAAGAAAG+TGG - Chr5:76941412-76941431 MsG0580028223.01.T01:intron 40.0%
TTAAGATTTCACTCGCCAAG+AGG + Chr5:76944510-76944529 None:intergenic 40.0%
TTATCTAGCTGTACGCTACA+TGG - Chr5:76941271-76941290 MsG0580028223.01.T01:intron 40.0%
TTCATCTCTTGAATGGAAGG+AGG + Chr5:76947627-76947646 None:intergenic 40.0%
TTGATTGGATGGAAAAGGTG+GGG - Chr5:76940758-76940777 MsG0580028223.01.T01:CDS 40.0%
TTGCGTCCAAATAGTACACA+AGG + Chr5:76947152-76947171 None:intergenic 40.0%
! CACCTTTTCCATCCAATCAA+TGG + Chr5:76940758-76940777 None:intergenic 40.0%
! CATTGATTGGATGGAAAAGG+TGG - Chr5:76940756-76940775 MsG0580028223.01.T01:CDS 40.0%
! GAATGATCTTGGTGGTTCAA+TGG - Chr5:76940549-76940568 MsG0580028223.01.T01:CDS 40.0%
! GATGGAATCCATTGATTGGA+TGG - Chr5:76940747-76940766 MsG0580028223.01.T01:intron 40.0%
! GTTTTCTTGCGTTTAGCATC+AGG + Chr5:76943194-76943213 None:intergenic 40.0%
! TAAAACTAAAAGGGGGCATG+GGG - Chr5:76943452-76943471 MsG0580028223.01.T01:intron 40.0%
! TAGTATTGGACGCTAGACAT+AGG + Chr5:76941973-76941992 None:intergenic 40.0%
! TATTGGTATTCCTTTGAGGG+GGG + Chr5:76943255-76943274 None:intergenic 40.0%
! TCAAACTCCAATAGGAGTGT+TGG - Chr5:76943082-76943101 MsG0580028223.01.T01:intron 40.0%
! TCCATTATGTTGTTTGCCAC+TGG - Chr5:76941369-76941388 MsG0580028223.01.T01:intron 40.0%
! TGAGGGGTTTTCAAAATGCT+TGG + Chr5:76944670-76944689 None:intergenic 40.0%
! TGTTGGCTGATATTACTGCA+AGG - Chr5:76944429-76944448 MsG0580028223.01.T01:intron 40.0%
!! ACATCGACTCTTCTGATAGA+AGG - Chr5:76942231-76942250 MsG0580028223.01.T01:intron 40.0%
!! ATAAGAAGTACTTGAGAGGG+GGG + Chr5:76944213-76944232 None:intergenic 40.0%
!! ATGTCAGGTGTCATTTGTGA+GGG - Chr5:76947306-76947325 MsG0580028223.01.T01:intron 40.0%
!! GGGTACCTGGTTTTTACAAT+TGG - Chr5:76944606-76944625 MsG0580028223.01.T01:intron 40.0%
!! TCACCGAACATTTTGAGTGA+GGG + Chr5:76944687-76944706 None:intergenic 40.0%
!!! ATGGTTTTGGAATCCAATGC+AGG - Chr5:76942710-76942729 MsG0580028223.01.T01:intron 40.0%
!!! GTTTTTTATGTGTCTGCGAC+TGG + Chr5:76942152-76942171 None:intergenic 40.0%
!!! TGTCATGCCATTTTTGTCGA+AGG - Chr5:76947219-76947238 MsG0580028223.01.T01:intron 40.0%
ACACTAGCAAGTGCACGTAA+AGG - Chr5:76945542-76945561 MsG0580028223.01.T01:CDS 45.0%
ACAGCTGCTGCAATTTCTGA+TGG + Chr5:76942758-76942777 None:intergenic 45.0%
ACCAAGTTATGGAAGCCTCT+TGG - Chr5:76944492-76944511 MsG0580028223.01.T01:intron 45.0%
ACCTGCATATCAACAGATCG+AGG + Chr5:76941501-76941520 None:intergenic 45.0%
AGCCCTAAGAGGCTATATAG+TGG + Chr5:76944127-76944146 None:intergenic 45.0%
AGTTAGGTGCCAACCAATCA+TGG + Chr5:76945023-76945042 None:intergenic 45.0%
CAAATGACACCTGACATCCA+TGG + Chr5:76947303-76947322 None:intergenic 45.0%
CATGACCCATTGTCAACCAA+AGG - Chr5:76945307-76945326 MsG0580028223.01.T01:intron 45.0%
CGCAATGTACAAAGCTTGAG+GGG - Chr5:76947167-76947186 MsG0580028223.01.T01:intron 45.0%
CTTGTGCCTCAAACTCCAAT+AGG - Chr5:76943074-76943093 MsG0580028223.01.T01:intron 45.0%
GACGCAATGTACAAAGCTTG+AGG - Chr5:76947165-76947184 MsG0580028223.01.T01:intron 45.0%
GCACACAACATGCACAACAA+AGG + Chr5:76947509-76947528 None:intergenic 45.0%
GCAGGATGGAATCCATTGAT+TGG - Chr5:76940743-76940762 MsG0580028223.01.T01:intron 45.0%
GCATGCAACTACTTGCTTGT+TGG - Chr5:76946208-76946227 MsG0580028223.01.T01:intron 45.0%
GCGATTACACTGGTCAAGTT+CGG - Chr5:76947355-76947374 MsG0580028223.01.T01:intron 45.0%
GCTGAGTGAGGAGAATTTGA+AGG - Chr5:76940639-76940658 MsG0580028223.01.T01:CDS 45.0%
GGCATTAATCCATGGATGTC+AGG - Chr5:76947291-76947310 MsG0580028223.01.T01:intron 45.0%
GGGTTTATATTTCTCGTGGC+TGG - Chr5:76947326-76947345 MsG0580028223.01.T01:intron 45.0%
GTCTAGCGTCCAATACTAAC+AGG - Chr5:76941975-76941994 MsG0580028223.01.T01:intron 45.0%
GTGGCAAACACATGTTAGAC+AGG + Chr5:76942264-76942283 None:intergenic 45.0%
TCCTCGATCTGTTGATATGC+AGG - Chr5:76941497-76941516 MsG0580028223.01.T01:intron 45.0%
TCTGGCAGCCAAAATTGATG+AGG - Chr5:76941467-76941486 MsG0580028223.01.T01:intron 45.0%
TCTTGTGTGGTGAAGCACAT+TGG + Chr5:76945180-76945199 None:intergenic 45.0%
TGAAGTGGAGAATCTGCAAG+AGG + Chr5:76943164-76943183 None:intergenic 45.0%
TTATAGGCTGGACTGTGCTT+TGG - Chr5:76941230-76941249 MsG0580028223.01.T01:intron 45.0%
! AACTTTGGAGATGCAGGCTA+TGG - Chr5:76947671-76947690 MsG0580028223.01.T01:CDS 45.0%
! ACTTTGGAGATGCAGGCTAT+GGG - Chr5:76947672-76947691 MsG0580028223.01.T01:CDS 45.0%
! AGAGCATCCAACACTCCTAT+TGG + Chr5:76943092-76943111 None:intergenic 45.0%
! AGGTAGTGGTTCTTCTGCAA+AGG - Chr5:76943031-76943050 MsG0580028223.01.T01:intron 45.0%
! ATTGGAGTTTGAGGCACAAG+AGG + Chr5:76943074-76943093 None:intergenic 45.0%
! GACATCCATGGATTAATGCC+AGG + Chr5:76947291-76947310 None:intergenic 45.0%
! GCATGTAACTTTGGAGATGC+AGG - Chr5:76947665-76947684 MsG0580028223.01.T01:CDS 45.0%
! TGCACTTGCTAGTGTTTCTC+TGG + Chr5:76945537-76945556 None:intergenic 45.0%
! TTTTTCACTGCAGGCTTGAC+TGG - Chr5:76947116-76947135 MsG0580028223.01.T01:intron 45.0%
!! AGAGATGGGTTATGCAGCTA+GGG - Chr5:76944098-76944117 MsG0580028223.01.T01:intron 45.0%
!! CACCGAACATTTTGAGTGAG+GGG + Chr5:76944686-76944705 None:intergenic 45.0%
!! CTCACCGAACATTTTGAGTG+AGG + Chr5:76944688-76944707 None:intergenic 45.0%
!! GATGTCAGGTGTCATTTGTG+AGG - Chr5:76947305-76947324 MsG0580028223.01.T01:intron 45.0%
!! GCATGGGGCAAAGGTATTAT+AGG - Chr5:76943467-76943486 MsG0580028223.01.T01:intron 45.0%
!! TAGAGATGGGTTATGCAGCT+AGG - Chr5:76944097-76944116 MsG0580028223.01.T01:intron 45.0%
!! TGACTTGTTAGCGTTGTGTC+TGG - Chr5:76941654-76941673 MsG0580028223.01.T01:intron 45.0%
!! AATAAAAGAAATTAATTAAT+TGG + Chr5:76946690-76946709 None:intergenic 5.0%
!! ATCAAATATTTAATAATAAA+AGG + Chr5:76941110-76941129 None:intergenic 5.0%
!! TCAAATATTTAATAATAAAA+GGG + Chr5:76941109-76941128 None:intergenic 5.0%
!!! AGTTTTTAAAAAAATTATTA+TGG + Chr5:76942186-76942205 None:intergenic 5.0%
!!! TAATAATTTTTTTAAAAACT+TGG - Chr5:76942186-76942205 MsG0580028223.01.T01:intron 5.0%
!!! TTTTTTTATATAAAACTTAT+CGG - Chr5:76945647-76945666 MsG0580028223.01.T01:CDS 5.0%
AAGGTACACAAGGCCACAGA+AGG - Chr5:76947405-76947424 MsG0580028223.01.T01:intron 50.0%
AGGAGACATACAGCCCTAAG+AGG + Chr5:76944138-76944157 None:intergenic 50.0%
AGGTACACAAGGCCACAGAA+GGG - Chr5:76947406-76947425 MsG0580028223.01.T01:intron 50.0%
ATCTCACGTCGGATACAACG+AGG - Chr5:76945257-76945276 MsG0580028223.01.T01:intron 50.0%
ATTGGATTTGCAGGGCAGGA+TGG - Chr5:76940729-76940748 MsG0580028223.01.T01:intron 50.0%
CAACAGCTGTCATCAGGTAG+TGG - Chr5:76943017-76943036 MsG0580028223.01.T01:intron 50.0%
CCAGCATGTCAACAGCAGAA+AGG + Chr5:76941304-76941323 None:intergenic 50.0%
CCGACGTGAGATGCAAAAGA+CGG + Chr5:76945249-76945268 None:intergenic 50.0%
CCTTTCTGCTGTTGACATGC+TGG - Chr5:76941301-76941320 MsG0580028223.01.T01:intron 50.0%
CTGGTGTGTAGCGATTACAC+TGG - Chr5:76947345-76947364 MsG0580028223.01.T01:intron 50.0%
CTTGAGGGGAAGACACTCAT+TGG - Chr5:76947181-76947200 MsG0580028223.01.T01:intron 50.0%
GAAGCACATTGGACGTCTTC+TGG + Chr5:76945169-76945188 None:intergenic 50.0%
GAGAATTGGATTTGCAGGGC+AGG - Chr5:76940725-76940744 MsG0580028223.01.T01:intron 50.0%
GCATCAGGGCTGTTATGAAG+TGG + Chr5:76943179-76943198 None:intergenic 50.0%
GCCAAGAGGCTTCCATAACT+TGG + Chr5:76944496-76944515 None:intergenic 50.0%
GCTGCAGCTGTCTTAATTCC+TGG - Chr5:76947270-76947289 MsG0580028223.01.T01:intron 50.0%
GGGAAGACACTCATTGGACT+AGG - Chr5:76947187-76947206 MsG0580028223.01.T01:intron 50.0%
GTGCATGTTGTGTGCATTGC+TGG - Chr5:76947514-76947533 MsG0580028223.01.T01:CDS 50.0%
TCAGGTGATGCACTCTTGTG+TGG + Chr5:76945193-76945212 None:intergenic 50.0%
TTCTCCTCACTCAGCAATGG+AGG + Chr5:76940634-76940653 None:intergenic 50.0%
! CAAGAGCACAGGGAGATGAA+GGG - Chr5:76947558-76947577 MsG0580028223.01.T01:CDS 50.0%
! CCGTCTTTTGCATCTCACGT+CGG - Chr5:76945246-76945265 MsG0580028223.01.T01:intron 50.0%
! TCAAGAGCACAGGGAGATGA+AGG - Chr5:76947557-76947576 MsG0580028223.01.T01:CDS 50.0%
! TGCCTTGTGTCAAGAGCACA+GGG - Chr5:76947548-76947567 MsG0580028223.01.T01:CDS 50.0%
! TTGGTGACTTGAGTGAGGAG+TGG + Chr5:76944011-76944030 None:intergenic 50.0%
!! GGTGGTGGAACATACTCAAC+TGG + Chr5:76940601-76940620 None:intergenic 50.0%
!! TTGTTTGGAATGGGGGTACC+TGG - Chr5:76944593-76944612 MsG0580028223.01.T01:intron 50.0%
AATGGAGGTGGCAGCAATGG+TGG + Chr5:76940619-76940638 None:intergenic 55.0%
AGCAATGGAGGTGGCAGCAA+TGG + Chr5:76940622-76940641 None:intergenic 55.0%
AGCACAGGGAGATGAAGGGA+CGG - Chr5:76947562-76947581 MsG0580028223.01.T01:CDS 55.0%
AGTCACTGCGTACGAGTACG+AGG - Chr5:76946885-76946904 MsG0580028223.01.T01:CDS 55.0%
CTCCCTGTGCTCTTGACACA+AGG + Chr5:76947553-76947572 None:intergenic 55.0%
GGAGATGAAGGGACGGCTTT+CGG - Chr5:76947569-76947588 MsG0580028223.01.T01:CDS 55.0%
GTGCATCACCTGATCTGCTC+TGG - Chr5:76945200-76945219 MsG0580028223.01.T01:intron 55.0%
TCCTCACTCAGCAATGGAGG+TGG + Chr5:76940631-76940650 None:intergenic 55.0%
TTGGATGATGCCCCCCTCAA+AGG - Chr5:76943242-76943261 MsG0580028223.01.T01:intron 55.0%
! GTGCCTTGTGTCAAGAGCAC+AGG - Chr5:76947547-76947566 MsG0580028223.01.T01:CDS 55.0%
! GTGTGCATTGCTGGTTGCAC+TGG - Chr5:76947523-76947542 MsG0580028223.01.T01:CDS 55.0%
! TAAAAGGGGGCATGGGGCAA+AGG - Chr5:76943458-76943477 MsG0580028223.01.T01:intron 55.0%
!! TGGACGTCTTCTGGTCTTGC+AGG + Chr5:76945160-76945179 None:intergenic 55.0%
CCAACGGTCCAGAGCAGATC+AGG + Chr5:76945211-76945230 None:intergenic 60.0%
GCCACCTCCATTGCTGAGTG+AGG - Chr5:76940627-76940646 MsG0580028223.01.T01:CDS 60.0%
! CCTGATCTGCTCTGGACCGT+TGG - Chr5:76945208-76945227 MsG0580028223.01.T01:intron 60.0%
GGAGGTGGCAGCAATGGTGG+TGG + Chr5:76940616-76940635 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 76940484 76947698 76940484 ID=MsG0580028223.01;Name=MsG0580028223.01
Chr5 mRNA 76940484 76947698 76940484 ID=MsG0580028223.01.T01;Parent=MsG0580028223.01;Name=MsG0580028223.01.T01;_AED=0.12;_eAED=0.21;_QI=0|0|0|1|1|1|9|0|493
Chr5 exon 76947408 76947698 76947408 ID=MsG0580028223.01.T01:exon:15567;Parent=MsG0580028223.01.T01
Chr5 exon 76946860 76946946 76946860 ID=MsG0580028223.01.T01:exon:15566;Parent=MsG0580028223.01.T01
Chr5 exon 76946664 76946762 76946664 ID=MsG0580028223.01.T01:exon:15565;Parent=MsG0580028223.01.T01
Chr5 exon 76945529 76945730 76945529 ID=MsG0580028223.01.T01:exon:15564;Parent=MsG0580028223.01.T01
Chr5 exon 76945320 76945450 76945320 ID=MsG0580028223.01.T01:exon:15563;Parent=MsG0580028223.01.T01
Chr5 exon 76944951 76945195 76944951 ID=MsG0580028223.01.T01:exon:15562;Parent=MsG0580028223.01.T01
Chr5 exon 76940927 76941053 76940927 ID=MsG0580028223.01.T01:exon:15561;Parent=MsG0580028223.01.T01
Chr5 exon 76940755 76940855 76940755 ID=MsG0580028223.01.T01:exon:15560;Parent=MsG0580028223.01.T01
Chr5 exon 76940484 76940682 76940484 ID=MsG0580028223.01.T01:exon:15559;Parent=MsG0580028223.01.T01
Chr5 CDS 76947408 76947698 76947408 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76946860 76946946 76946860 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76946664 76946762 76946664 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76945529 76945730 76945529 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76945320 76945450 76945320 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76944951 76945195 76944951 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76940927 76941053 76940927 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76940755 76940855 76940755 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Chr5 CDS 76940484 76940682 76940484 ID=MsG0580028223.01.T01:cds;Parent=MsG0580028223.01.T01
Gene Sequence

>MsG0580028223.01.T01

ATGGCACCACCAAGTTTTGATTTTTCATGTCTTTTTTGCACTGAAGACAGTAGCATTTTAGATGAGAATGATCTTGGTGGTTCAATGGAAGATGAAACTGAGCAATTTGATGAGCCAGTTGAGTATGTTCCACCACCATTGCTGCCACCTCCATTGCTGAGTGAGGAGAATTTGAAGGTTTTGATTGAAAAAGAATGTCATCACTTGCCTGCTAGTGATTATGTCAATAGGCTGAAAAATGGAGAATTGGATTTGCAGGGCAGGATGGAATCCATTGATTGGATGGAAAAGGCTGGACTGTGCTTTGGTTTTGCACCTCTCTGTATTTATCTAGCTGTACGCTACATGGATCGCTTCCTTTCTGCTGTTGACATGCTGAAGGAAAGAAAGTGGTCAATTCAACTCTTGGCTTTTTGTTGCTTATATCTGGCAGCCAAAATTGATGAGGTTGTTGTTCCTCGATCTGTTGATATGCAGATGGATGAAAAGAAGTATTTATTTGATAAGAAAACATTACGTACGACTGAGCTTATGATACTAAGTACATTGAAATGGAGAATGCAAGCAATTACACCTTTCTCCTACATTGACTTTTTCCTTAGCAAGATCAATGGTGATCAAGTTCCAATAGGAGATTCAATTTTGCAATCTTTCCAACTCATAATGAGTACTGTAAGAGGACTTGACTTCATTCAGTTCAGACCATCAGAAATTGCAGCAGCTGTTGCATTACTAGTATCTGTGGAGGTGGAAAACCTAACTGTTCAAACTGAGAAAGCAGTTTCTCTTCTCATTGAATATGTTGAAAAGGAGAAAGTAATGAAGTGTATTGAAATGATTCAACAGCTGTCATCAGGTAGTGGTTCTTCTGCAAAGGATGCTAATGTTTCTGTTCCTCTTGTGCCTCAAACTCCAATAGGAGTGTTGGATGCTCTTTGCCTCAGCTACAATAGTGATGACAATCACTCAGATGCTACTACTGCACCTCTTGCAGATTCTCCACTTCATAACAGCCCTGATGCTAAACGCAAGAAAACCATATCCAACTTTGAAGAGCTTGACTGGACTGTTATGTCCTTGTGTACTATTTGGACGCAATGTACAAAGCTTGAGGGGAAGACACTCATTGGACTAGGCCATGCATTTGTCATGCCATTTTTGTCGAAGGTTGCATTTCTTTGGGGTTTATATTTCTCGTGGCTGGTGTGTAGCGATTACACTGGTCAAGTTCGGCAATCCTTACAAAAGAAATATCACTTAAAGGTACACAAGGCCACAGAAGGAATTCACCTTTGTTGTGCATGTTGTGTGCATTGCTGGTTGCACTGGTGTGCCTTGTGTCAAGAGCACAGGGAGATGAAGGGACGGCTTTCGGAAAATGTTTGTTCAGAAATGACAATTCTAAACCCTCCTTCCATTCAAGAGATGAAGTCTACTGACAACAATGAGCATGTAACTTTGGAGATGCAGGCTATGGGATAG
Protein sequence

>MsG0580028223.01.T01

MAPPSFDFSCLFCTEDSSILDENDLGGSMEDETEQFDEPVEYVPPPLLPPPLLSEENLKVLIEKECHHLPASDYVNRLKNGELDLQGRMESIDWMEKAGLCFGFAPLCIYLAVRYMDRFLSAVDMLKERKWSIQLLAFCCLYLAAKIDEVVVPRSVDMQMDEKKYLFDKKTLRTTELMILSTLKWRMQAITPFSYIDFFLSKINGDQVPIGDSILQSFQLIMSTVRGLDFIQFRPSEIAAAVALLVSVEVENLTVQTEKAVSLLIEYVEKEKVMKCIEMIQQLSSGSGSSAKDANVSVPLVPQTPIGVLDALCLSYNSDDNHSDATTAPLADSPLHNSPDAKRKKTISNFEELDWTVMSLCTIWTQCTKLEGKTLIGLGHAFVMPFLSKVAFLWGLYFSWLVCSDYTGQVRQSLQKKYHLKVHKATEGIHLCCACCVHCWLHWCALCQEHREMKGRLSENVCSEMTILNPPSIQEMKSTDNNEHVTLEMQAMG*