AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033423.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033423.01.T01 MTR_2g066660 93.421 76 5 0 1 76 8 83 8.27e-50 157
MsG0680033423.01.T01 MTR_3g048535 68.966 116 33 2 1 116 39 151 6.21e-49 157
MsG0680033423.01.T01 MTR_1g084880 38.542 96 54 2 40 135 170 260 2.10e-14 68.9
MsG0680033423.01.T01 MTR_8g042540 58.000 50 21 0 79 128 14 63 2.74e-14 64.7
MsG0680033423.01.T01 MTR_1g019580 54.000 50 23 0 79 128 57 106 3.32e-14 65.9
MsG0680033423.01.T01 MTR_7g110090 65.909 44 15 0 85 128 205 248 3.50e-14 68.2
MsG0680033423.01.T01 MTR_4g062370 60.377 53 21 0 81 133 205 257 3.68e-14 69.3
MsG0680033423.01.T01 MTR_8g042540 58.000 50 21 0 79 128 26 75 3.77e-14 64.7
MsG0680033423.01.T01 MTR_3g048970 37.895 95 54 2 41 135 171 260 7.81e-14 67.4
MsG0680033423.01.T01 MTR_5g094740 56.364 55 24 0 79 133 747 801 1.23e-13 67.8
MsG0680033423.01.T01 MTR_4g057880 52.830 53 25 0 81 133 2 54 2.31e-13 62.0
MsG0680033423.01.T01 MTR_1g087870 44.068 59 33 0 79 137 152 210 5.89e-13 64.7
MsG0680033423.01.T01 MTR_3g452180 47.826 69 35 1 60 127 95 163 7.61e-13 63.5
MsG0680033423.01.T01 MTR_2g016390 37.634 93 53 2 41 133 604 691 3.36e-12 63.5
MsG0680033423.01.T01 MTR_4g081330 49.091 55 28 0 78 132 1092 1146 6.99e-12 62.8
MsG0680033423.01.T01 MTR_1g105780 49.091 55 28 0 79 133 200 254 7.04e-12 62.0
MsG0680033423.01.T01 MTR_1g105765 49.091 55 28 0 79 133 200 254 7.18e-12 62.0
MsG0680033423.01.T01 MTR_3g070250 37.234 94 54 2 40 133 175 263 1.53e-11 61.2
MsG0680033423.01.T01 MTR_0260s0010 86.667 30 4 0 1 30 778 807 4.68e-11 60.5
MsG0680033423.01.T01 MTR_1g069260 54.000 50 23 0 79 128 216 265 6.82e-11 59.3
MsG0680033423.01.T01 MTR_4g032580 50.000 48 24 0 81 128 230 277 9.48e-11 58.9
MsG0680033423.01.T01 MTR_4g032560 50.000 48 24 0 81 128 230 277 9.86e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGAATGTGGTTGTATA+TGG 0.268575 6:+64575026 MsG0680033423.01.T01:CDS
TTGCTATCTGTCTTAGGATT+TGG 0.273833 6:+64575266 MsG0680033423.01.T01:CDS
AGATCCTTGCTATCTGTCTT+AGG 0.281334 6:+64575260 MsG0680033423.01.T01:CDS
CCAAACGCCTGCGTCATATA+TGG 0.341992 6:+64573384 MsG0680033423.01.T01:CDS
GATTCCGTGGGTTGTGTTCT+CGG 0.356311 6:+64573242 MsG0680033423.01.T01:CDS
GACTTGTTGTGCTTTAGCTT+GGG 0.392770 6:+64573358 MsG0680033423.01.T01:CDS
CCTCATGCTCACTTTAAGAT+TGG 0.409855 6:+64575076 MsG0680033423.01.T01:CDS
AGATTGGCGGTGGCTGGAAC+AGG 0.416190 6:+64575092 MsG0680033423.01.T01:CDS
ACTTTAAGATTGGCGGTGGC+TGG 0.418939 6:+64575086 MsG0680033423.01.T01:CDS
TGAAACTGAGAATCTGAGTT+TGG 0.418987 6:+64575003 MsG0680033423.01.T01:CDS
AGACTTGTTGTGCTTTAGCT+TGG 0.425417 6:+64573357 MsG0680033423.01.T01:CDS
ATTCTCAGTTTCAGTGTTCA+AGG 0.440023 6:-64574993 None:intergenic
CATGAGGGCGTGTAACAAAC+TGG 0.441451 6:-64575060 None:intergenic
ACAGGATGGTCAAGGCTAGA+AGG 0.443921 6:+64575110 MsG0680033423.01.T01:CDS
CCATATATGACGCAGGCGTT+TGG 0.449506 6:-64573384 None:intergenic
TGGTCAAGGCTAGAAGGTTA+AGG 0.481185 6:+64575116 MsG0680033423.01.T01:CDS
CATGCTCACTTTAAGATTGG+CGG 0.482279 6:+64575079 MsG0680033423.01.T01:CDS
CTGAGTTTGGTTGATGAATG+TGG 0.483514 6:+64575016 MsG0680033423.01.T01:CDS
TGATGAATGTGGTTGTATAT+GGG 0.484155 6:+64575027 MsG0680033423.01.T01:CDS
TATATGACGCAGGCGTTTGG+CGG 0.508001 6:-64573381 None:intergenic
CTCGGTCAACAAGACGAGAC+TGG 0.509584 6:+64573260 MsG0680033423.01.T01:CDS
GAAACAACAAACGACAGAAA+AGG 0.511685 6:-64575235 None:intergenic
ATCAAAGGCCTTCCTTCCAC+TGG 0.520532 6:-64573197 None:intergenic
TCCACTGGTGGGACAAGGAT+AGG 0.525960 6:-64573182 None:intergenic
TTCTCAGTTTCAGTGTTCAA+GGG 0.549214 6:-64574992 None:intergenic
AAAGGCCTTCCTTCCACTGG+TGG 0.551496 6:-64573194 None:intergenic
TTCCTTCCACTGGTGGGACA+AGG 0.554412 6:-64573187 None:intergenic
GTCAGTGTTAGATGATTCCG+TGG 0.562809 6:+64573229 MsG0680033423.01.T01:CDS
TTGTCCCACCAGTGGAAGGA+AGG 0.564681 6:+64573189 MsG0680033423.01.T01:CDS
ATCCTTGTCCCACCAGTGGA+AGG 0.565938 6:+64573185 MsG0680033423.01.T01:CDS
GCTCACTTTAAGATTGGCGG+TGG 0.568885 6:+64575082 MsG0680033423.01.T01:CDS
CCAATCTTAAAGTGAGCATG+AGG 0.578221 6:-64575076 None:intergenic
ACCTATCCTTGTCCCACCAG+TGG 0.581353 6:+64573181 MsG0680033423.01.T01:CDS
ACTGACAGATACATAATCAA+AGG 0.596373 6:-64573212 None:intergenic
AAATCCTAAGACAGATAGCA+AGG 0.605831 6:-64575264 None:intergenic
AAGGCCTTCCTTCCACTGGT+GGG 0.622615 6:-64573193 None:intergenic
AATTCACTGACTGTGAGACT+CGG 0.641855 6:+64573318 MsG0680033423.01.T01:CDS
TGATTCACCATATATGACGC+AGG 0.647912 6:-64573391 None:intergenic
TGGCGGTGGCTGGAACAGGA+TGG 0.649155 6:+64575096 MsG0680033423.01.T01:CDS
TTGACCGAGAACACAACCCA+CGG 0.663993 6:-64573246 None:intergenic
CAAGGCTAGAAGGTTAAGGA+CGG 0.676218 6:+64575120 MsG0680033423.01.T01:CDS
TGGCTGGAACAGGATGGTCA+AGG 0.676417 6:+64575102 MsG0680033423.01.T01:CDS
AGGGCGTGTAACAAACTGGA+GGG 0.676724 6:-64575056 None:intergenic
CAATCTTAAAGTGAGCATGA+GGG 0.680650 6:-64575075 None:intergenic
ACTGGTGGGACAAGGATAGG+TGG 0.683044 6:-64573179 None:intergenic
GAGGGCGTGTAACAAACTGG+AGG 0.699235 6:-64575057 None:intergenic
TCAGTGTTAGATGATTCCGT+GGG 0.725649 6:+64573230 MsG0680033423.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATCTTTACAAATTTT+GGG - Chr6:64573439-64573458 None:intergenic 10.0%
!!! AGAAATATTTTTTAAATCAA+CGG - Chr6:64573771-64573790 None:intergenic 10.0%
!!! TAAATAATCTTTACAAATTT+TGG - Chr6:64573440-64573459 None:intergenic 10.0%
!! TAAATCAAAAATACATGTAA+GGG - Chr6:64574223-64574242 None:intergenic 15.0%
!! TCTAAAAAAATTCTTTGTAT+GGG + Chr6:64573788-64573807 MsG0680033423.01.T01:intron 15.0%
!! TCTATATTATATATAATCCA+AGG + Chr6:64573598-64573617 MsG0680033423.01.T01:intron 15.0%
!!! GAAATATTTTTTAAATCAAC+GGG - Chr6:64573770-64573789 None:intergenic 15.0%
!!! TTCTAAAAAAATTCTTTGTA+TGG + Chr6:64573787-64573806 MsG0680033423.01.T01:intron 15.0%
!! AAATCAAAAATACATGTAAG+GGG - Chr6:64574222-64574241 None:intergenic 20.0%
!! CTAAAAAAATTCTTTGTATG+GGG + Chr6:64573789-64573808 MsG0680033423.01.T01:intron 20.0%
!! CTAAATCAAAAATACATGTA+AGG - Chr6:64574224-64574243 None:intergenic 20.0%
!! TAAAAAAATTCTTTGTATGG+GGG + Chr6:64573790-64573809 MsG0680033423.01.T01:intron 20.0%
!! TTAAATTCATTATGCACAAA+TGG - Chr6:64574797-64574816 None:intergenic 20.0%
!!! ACACATTTTTTTATGTTTCA+GGG + Chr6:64574440-64574459 MsG0680033423.01.T01:intron 20.0%
!!! TGTTTAAAAAGATATTGACT+TGG + Chr6:64574887-64574906 MsG0680033423.01.T01:intron 20.0%
!!! TTATGATGTTTTAATTATGC+AGG + Chr6:64574938-64574957 MsG0680033423.01.T01:intron 20.0%
!!! TTTTTTTGTTGTTCGTTATT+AGG + Chr6:64575195-64575214 MsG0680033423.01.T01:intron 20.0%
! AATGACATACATATTAGATG+AGG - Chr6:64574248-64574267 None:intergenic 25.0%
! AGCCAAAAATAATCAATCAA+CGG - Chr6:64573698-64573717 None:intergenic 25.0%
! CAAATGAAGAGTAAAATGAT+TGG - Chr6:64573721-64573740 None:intergenic 25.0%
! TGGATAACATTAGTATTTGT+TGG + Chr6:64574643-64574662 MsG0680033423.01.T01:intron 25.0%
!! ACATTAGTATTTGTTGGAAA+TGG + Chr6:64574649-64574668 MsG0680033423.01.T01:intron 25.0%
!! CATTAGTATTTGTTGGAAAT+GGG + Chr6:64574650-64574669 MsG0680033423.01.T01:intron 25.0%
!!! AATGGAAATGGCTATTTTTA+AGG - Chr6:64573949-64573968 None:intergenic 25.0%
!!! CACACATTTTTTTATGTTTC+AGG + Chr6:64574439-64574458 MsG0680033423.01.T01:intron 25.0%
!!! TATTTTTAAGGATTCTTCAG+AGG - Chr6:64573937-64573956 None:intergenic 25.0%
!!! TGTTTTAATTATGCAGGATT+TGG + Chr6:64574944-64574963 MsG0680033423.01.T01:intron 25.0%
ACATCCGTAAACACAAATAA+TGG + Chr6:64574114-64574133 MsG0680033423.01.T01:intron 30.0%
ACTGACAGATACATAATCAA+AGG - Chr6:64573215-64573234 None:intergenic 30.0%
ATATGGTGAATCATACAACT+TGG + Chr6:64573401-64573420 MsG0680033423.01.T01:intron 30.0%
TAGGATTTGCAAATAAACCT+TGG - Chr6:64573618-64573637 None:intergenic 30.0%
TGATGAATGTGGTTGTATAT+GGG + Chr6:64575027-64575046 MsG0680033423.01.T01:CDS 30.0%
TTGATGAATGTGGTTGTATA+TGG + Chr6:64575026-64575045 MsG0680033423.01.T01:CDS 30.0%
TTGCATGAGAATATATAGAG+TGG - Chr6:64574065-64574084 None:intergenic 30.0%
! TGTGCCATTATTTGTGTTTA+CGG - Chr6:64574121-64574140 None:intergenic 30.0%
!! ATTAGTATTGATCCATCCTA+AGG - Chr6:64573671-64573690 None:intergenic 30.0%
!! CAAATCCTAAACCTACTTTT+TGG + Chr6:64573629-64573648 MsG0680033423.01.T01:intron 30.0%
!! CACCGTTGATTGATTATTTT+TGG + Chr6:64573693-64573712 MsG0680033423.01.T01:intron 30.0%
AAATCCTAAGACAGATAGCA+AGG - Chr6:64575267-64575286 None:intergenic 35.0%
AACTAAGCATAATTTCCACC+TGG - Chr6:64573554-64573573 None:intergenic 35.0%
AAGTCGTAAGCAAAATTGGT+TGG - Chr6:64574479-64574498 None:intergenic 35.0%
ACCAAAGTCGTAAGCAAAAT+TGG - Chr6:64574483-64574502 None:intergenic 35.0%
ATGAGAATATATAGAGTGGC+AGG - Chr6:64574061-64574080 None:intergenic 35.0%
ATTCTCAGTTTCAGTGTTCA+AGG - Chr6:64574996-64575015 None:intergenic 35.0%
CAATCTTAAAGTGAGCATGA+GGG - Chr6:64575078-64575097 None:intergenic 35.0%
CCAATACTTCGAAGGAATTA+TGG - Chr6:64574544-64574563 None:intergenic 35.0%
CCATAATTCCTTCGAAGTAT+TGG + Chr6:64574541-64574560 MsG0680033423.01.T01:intron 35.0%
CTTTGGTGAAAAATATTCCC+TGG - Chr6:64574579-64574598 None:intergenic 35.0%
GAAACAACAAACGACAGAAA+AGG - Chr6:64575238-64575257 None:intergenic 35.0%
GGGTAGTTAAAGAATGGAAA+TGG - Chr6:64573961-64573980 None:intergenic 35.0%
GTTTACGGATGTATAGATGT+TGG - Chr6:64574106-64574125 None:intergenic 35.0%
TACATAATCCTGTGGTGAAA+TGG + Chr6:64574290-64574309 MsG0680033423.01.T01:intron 35.0%
TCAATATCCGTGTCAGAAAT+AGG + Chr6:64574676-64574695 MsG0680033423.01.T01:intron 35.0%
TCAGAGGAGTGATTTATGAA+AGG - Chr6:64573921-64573940 None:intergenic 35.0%
TCTAACACCAAAACAGCTAT+TGG - Chr6:64573865-64573884 None:intergenic 35.0%
TGAAACTGAGAATCTGAGTT+TGG + Chr6:64575003-64575022 MsG0680033423.01.T01:CDS 35.0%
TTCTCAGTTTCAGTGTTCAA+GGG - Chr6:64574995-64575014 None:intergenic 35.0%
TTCTCATTGACACCGATATA+TGG - Chr6:64575168-64575187 None:intergenic 35.0%
TTGCTATCTGTCTTAGGATT+TGG + Chr6:64575266-64575285 MsG0680033423.01.T01:CDS 35.0%
! AATTAGAAGAGTGCAGTAGT+GGG - Chr6:64573981-64574000 None:intergenic 35.0%
! ACCAATTTTGCTTACGACTT+TGG + Chr6:64574479-64574498 MsG0680033423.01.T01:intron 35.0%
! ACCTAAAACGTTGATTAAGC+AGG - Chr6:64574411-64574430 None:intergenic 35.0%
! ACCTGCTTAATCAACGTTTT+AGG + Chr6:64574407-64574426 MsG0680033423.01.T01:intron 35.0%
! ATGATTTGGAGCCAAAAAGT+AGG - Chr6:64573643-64573662 None:intergenic 35.0%
! ATGTCATTGTTGTTCAATCC+AGG + Chr6:64574260-64574279 MsG0680033423.01.T01:intron 35.0%
! CAGGGAATATTTTTCACCAA+AGG + Chr6:64574577-64574596 MsG0680033423.01.T01:intron 35.0%
! GAATATTTTTCACCAAAGGC+TGG + Chr6:64574581-64574600 MsG0680033423.01.T01:intron 35.0%
! TAATTAGAAGAGTGCAGTAG+TGG - Chr6:64573982-64574001 None:intergenic 35.0%
! TAGTATTTGTTGGAAATGGG+AGG + Chr6:64574653-64574672 MsG0680033423.01.T01:intron 35.0%
! TGTTGATAGGTATGCTACAT+TGG + Chr6:64574508-64574527 MsG0680033423.01.T01:intron 35.0%
!! ACTTTGGTGATAGTGTTGAT+AGG + Chr6:64574495-64574514 MsG0680033423.01.T01:intron 35.0%
!! AGTAGTGGGTAGTTAAAGAA+TGG - Chr6:64573967-64573986 None:intergenic 35.0%
AATCCTGTGGTGAAATGGAA+AGG + Chr6:64574295-64574314 MsG0680033423.01.T01:intron 40.0%
ACGGATGTATAGATGTTGGT+AGG - Chr6:64574102-64574121 None:intergenic 40.0%
AGTCATTGAGCACTAAACGT+GGG - Chr6:64574005-64574024 None:intergenic 40.0%
ATATCCGTGTCAGAAATAGG+TGG + Chr6:64574679-64574698 MsG0680033423.01.T01:intron 40.0%
ATTGGTAGAGAGAACAACCA+GGG + Chr6:64574559-64574578 MsG0680033423.01.T01:intron 40.0%
CAAAACAGCTATTGGTCAAG+TGG - Chr6:64573857-64573876 None:intergenic 40.0%
CACCACAGGATTATGTATCA+GGG - Chr6:64574287-64574306 None:intergenic 40.0%
CCAATCTTAAAGTGAGCATG+AGG - Chr6:64575079-64575098 None:intergenic 40.0%
CGGATGTATAGATGTTGGTA+GGG - Chr6:64574101-64574120 None:intergenic 40.0%
GACTTGTATAACGCATCACT+TGG + Chr6:64574616-64574635 MsG0680033423.01.T01:intron 40.0%
TATCCGTGTCAGAAATAGGT+GGG + Chr6:64574680-64574699 MsG0680033423.01.T01:intron 40.0%
TATTGGTAGAGAGAACAACC+AGG + Chr6:64574558-64574577 MsG0680033423.01.T01:intron 40.0%
TCACCACAGGATTATGTATC+AGG - Chr6:64574288-64574307 None:intergenic 40.0%
TCAGTGTTAGATGATTCCGT+GGG + Chr6:64573230-64573249 MsG0680033423.01.T01:CDS 40.0%
TCATTATGCACAAATGGCAC+AGG - Chr6:64574791-64574810 None:intergenic 40.0%
TCTCTCTACCAATACTTCGA+AGG - Chr6:64574552-64574571 None:intergenic 40.0%
TGATAGGTATGCTACATTGG+TGG + Chr6:64574511-64574530 MsG0680033423.01.T01:intron 40.0%
TGATTCACCATATATGACGC+AGG - Chr6:64573394-64573413 None:intergenic 40.0%
TGGAGCCAAAAAGTAGGTTT+AGG - Chr6:64573637-64573656 None:intergenic 40.0%
! AATTCACTGACTGTGAGACT+CGG + Chr6:64573318-64573337 MsG0680033423.01.T01:CDS 40.0%
! AGATCCTTGCTATCTGTCTT+AGG + Chr6:64575260-64575279 MsG0680033423.01.T01:CDS 40.0%
! ATGCAGGATTTGGCTCATAT+TGG + Chr6:64574954-64574973 MsG0680033423.01.T01:intron 40.0%
! CACTTGACCAATAGCTGTTT+TGG + Chr6:64573855-64573874 MsG0680033423.01.T01:intron 40.0%
! GACTTTGTTGAGATCGATTC+TGG + Chr6:64574845-64574864 MsG0680033423.01.T01:intron 40.0%
! GATTTATGAAAGGAGCGTGT+TGG - Chr6:64573911-64573930 None:intergenic 40.0%
! GGATGTATAGATGTTGGTAG+GGG - Chr6:64574100-64574119 None:intergenic 40.0%
! GTTATCGGTGCTCCATATAT+CGG + Chr6:64575153-64575172 MsG0680033423.01.T01:intron 40.0%
! TGAGATCGATTCTGGATTCT+TGG + Chr6:64574853-64574872 MsG0680033423.01.T01:intron 40.0%
! TGCAGGATTTGGCTCATATT+GGG + Chr6:64574955-64574974 MsG0680033423.01.T01:intron 40.0%
!! ACCTGGCTTTAGAAAAAACG+TGG - Chr6:64573537-64573556 None:intergenic 40.0%
!! AGACTTGTTGTGCTTTAGCT+TGG + Chr6:64573357-64573376 MsG0680033423.01.T01:CDS 40.0%
!! CAACGGGTTAAATGCATTGT+TGG - Chr6:64573754-64573773 None:intergenic 40.0%
!! CATGCTCACTTTAAGATTGG+CGG + Chr6:64575079-64575098 MsG0680033423.01.T01:CDS 40.0%
!! CCTCATGCTCACTTTAAGAT+TGG + Chr6:64575076-64575095 MsG0680033423.01.T01:CDS 40.0%
!! CCTGGCTTTAGAAAAAACGT+GGG - Chr6:64573536-64573555 None:intergenic 40.0%
!! CTGAGTTTGGTTGATGAATG+TGG + Chr6:64575016-64575035 MsG0680033423.01.T01:CDS 40.0%
!! GACTTGTTGTGCTTTAGCTT+GGG + Chr6:64573358-64573377 MsG0680033423.01.T01:CDS 40.0%
!! TTACCCACCTATTTCTGACA+CGG - Chr6:64574686-64574705 None:intergenic 40.0%
!!! ACGTTTTTTCTAAAGCCAGG+TGG + Chr6:64573536-64573555 MsG0680033423.01.T01:intron 40.0%
!!! TTTTTGGCTCCAAATCATCC+TGG + Chr6:64573645-64573664 MsG0680033423.01.T01:intron 40.0%
AAACCGCAACTTTAGCCTGT+TGG - Chr6:64574325-64574344 None:intergenic 45.0%
AAATGGAAAGGAGAGCCAAC+AGG + Chr6:64574307-64574326 MsG0680033423.01.T01:intron 45.0%
AAGAAGATTGTGTGCGAGCA+TGG - Chr6:64574158-64574177 None:intergenic 45.0%
ACAGGCTAAAGTTGCGGTTT+AGG + Chr6:64574325-64574344 MsG0680033423.01.T01:intron 45.0%
AGGATTATGTATCAGGGTCC+TGG - Chr6:64574281-64574300 None:intergenic 45.0%
ATCCTAAGGCCAGGATGATT+TGG - Chr6:64573657-64573676 None:intergenic 45.0%
CAAGGCTAGAAGGTTAAGGA+CGG + Chr6:64575120-64575139 MsG0680033423.01.T01:CDS 45.0%
CCATGCAATTCGCTGTTTAG+AGG + Chr6:64574734-64574753 MsG0680033423.01.T01:intron 45.0%
CCTCTAAACAGCGAATTGCA+TGG - Chr6:64574737-64574756 None:intergenic 45.0%
CTAAACAGCGAATTGCATGG+AGG - Chr6:64574734-64574753 None:intergenic 45.0%
GACCCTGATACATAATCCTG+TGG + Chr6:64574282-64574301 MsG0680033423.01.T01:intron 45.0%
GAGTCATTGAGCACTAAACG+TGG - Chr6:64574006-64574025 None:intergenic 45.0%
GCGTGTTGGATATCAAACAG+CGG - Chr6:64573897-64573916 None:intergenic 45.0%
GTCAGAAATAGGTGGGTAAG+AGG + Chr6:64574687-64574706 MsG0680033423.01.T01:intron 45.0%
GTCAGTGTTAGATGATTCCG+TGG + Chr6:64573229-64573248 MsG0680033423.01.T01:CDS 45.0%
TATTGATCCATCCTAAGGCC+AGG - Chr6:64573666-64573685 None:intergenic 45.0%
TCTCCTTTCCATTTCACCAC+AGG - Chr6:64574301-64574320 None:intergenic 45.0%
TGGTCAAGGCTAGAAGGTTA+AGG + Chr6:64575116-64575135 MsG0680033423.01.T01:CDS 45.0%
! AAGTGGTCAAAGTGCTTGGA+TGG - Chr6:64573840-64573859 None:intergenic 45.0%
! GTTGCGGTTTAGGACGTTTA+TGG + Chr6:64574335-64574354 MsG0680033423.01.T01:intron 45.0%
!! AAATCATCCTGGCCTTAGGA+TGG + Chr6:64573656-64573675 MsG0680033423.01.T01:intron 45.0%
!! ATAACGCATCACTTGGTGCA+TGG + Chr6:64574623-64574642 MsG0680033423.01.T01:intron 45.0%
!!! CCCACGTTTTTTCTAAAGCC+AGG + Chr6:64573533-64573552 MsG0680033423.01.T01:intron 45.0%
ACAGGATGGTCAAGGCTAGA+AGG + Chr6:64575110-64575129 MsG0680033423.01.T01:CDS 50.0%
AGGGCGTGTAACAAACTGGA+GGG - Chr6:64575059-64575078 None:intergenic 50.0%
AGTGCTTGGATGGATGCAGT+AGG - Chr6:64573830-64573849 None:intergenic 50.0%
ATCAAAGGCCTTCCTTCCAC+TGG - Chr6:64573200-64573219 None:intergenic 50.0%
CCAAACGCCTGCGTCATATA+TGG + Chr6:64573384-64573403 MsG0680033423.01.T01:CDS 50.0%
CCATATATGACGCAGGCGTT+TGG - Chr6:64573387-64573406 None:intergenic 50.0%
CTCGCACACAATCTTCTTGC+TGG + Chr6:64574160-64574179 MsG0680033423.01.T01:intron 50.0%
GAGCCAACAGGCTAAAGTTG+CGG + Chr6:64574319-64574338 MsG0680033423.01.T01:intron 50.0%
GTAAGAGGATACGATGTCCC+AGG + Chr6:64574702-64574721 MsG0680033423.01.T01:intron 50.0%
TATATGACGCAGGCGTTTGG+CGG - Chr6:64573384-64573403 None:intergenic 50.0%
TGGATGGATGCAGTAGGTTG+CGG - Chr6:64573824-64573843 None:intergenic 50.0%
TTGACCGAGAACACAACCCA+CGG - Chr6:64573249-64573268 None:intergenic 50.0%
! AGATGTTGGTAGGGGAGTAG+TGG - Chr6:64574092-64574111 None:intergenic 50.0%
! ATTGCATGGAGGTGTGAACC+TGG - Chr6:64574723-64574742 None:intergenic 50.0%
! CATGAGGGCGTGTAACAAAC+TGG - Chr6:64575063-64575082 None:intergenic 50.0%
! CTCCAAATCATCCTGGCCTT+AGG + Chr6:64573652-64573671 MsG0680033423.01.T01:intron 50.0%
! GACGGTGACAGTGTCGTTAT+CGG + Chr6:64575138-64575157 MsG0680033423.01.T01:intron 50.0%
! GATTCCGTGGGTTGTGTTCT+CGG + Chr6:64573242-64573261 MsG0680033423.01.T01:CDS 50.0%
! GGTCAAGTGGTCAAAGTGCT+TGG - Chr6:64573844-64573863 None:intergenic 50.0%
! TTGCATGGAGGTGTGAACCT+GGG - Chr6:64574722-64574741 None:intergenic 50.0%
!! ACTTTAAGATTGGCGGTGGC+TGG + Chr6:64575086-64575105 MsG0680033423.01.T01:CDS 50.0%
!! GCTCACTTTAAGATTGGCGG+TGG + Chr6:64575082-64575101 MsG0680033423.01.T01:CDS 50.0%
AAAGGCCTTCCTTCCACTGG+TGG - Chr6:64573197-64573216 None:intergenic 55.0%
AAGGCCTTCCTTCCACTGGT+GGG - Chr6:64573196-64573215 None:intergenic 55.0%
ACCTATCCTTGTCCCACCAG+TGG + Chr6:64573181-64573200 MsG0680033423.01.T01:CDS 55.0%
ACGCAATGCAAGCCAGCCTT+TGG - Chr6:64574596-64574615 None:intergenic 55.0%
ACTGGTGGGACAAGGATAGG+TGG - Chr6:64573182-64573201 None:intergenic 55.0%
ATCCTTGTCCCACCAGTGGA+AGG + Chr6:64573185-64573204 MsG0680033423.01.T01:CDS 55.0%
CTCGGTCAACAAGACGAGAC+TGG + Chr6:64573260-64573279 MsG0680033423.01.T01:CDS 55.0%
GGATGGATGCAGTAGGTTGC+GGG - Chr6:64573823-64573842 None:intergenic 55.0%
TCCACTGGTGGGACAAGGAT+AGG - Chr6:64573185-64573204 None:intergenic 55.0%
TGGCTGGAACAGGATGGTCA+AGG + Chr6:64575102-64575121 MsG0680033423.01.T01:CDS 55.0%
TTCCTTCCACTGGTGGGACA+AGG - Chr6:64573190-64573209 None:intergenic 55.0%
TTGTCCCACCAGTGGAAGGA+AGG + Chr6:64573189-64573208 MsG0680033423.01.T01:CDS 55.0%
! GAGGGCGTGTAACAAACTGG+AGG - Chr6:64575060-64575079 None:intergenic 55.0%
AGATTGGCGGTGGCTGGAAC+AGG + Chr6:64575092-64575111 MsG0680033423.01.T01:CDS 60.0%
TGGCGGTGGCTGGAACAGGA+TGG + Chr6:64575096-64575115 MsG0680033423.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 64573173 64575303 64573173 ID=MsG0680033423.01;Name=MsG0680033423.01
Chr6 mRNA 64573173 64575303 64573173 ID=MsG0680033423.01.T01;Parent=MsG0680033423.01;Name=MsG0680033423.01.T01;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.66|1|1|3|0|157
Chr6 exon 64573173 64573405 64573173 ID=MsG0680033423.01.T01:exon:5188;Parent=MsG0680033423.01.T01
Chr6 exon 64574988 64575141 64574988 ID=MsG0680033423.01.T01:exon:5187;Parent=MsG0680033423.01.T01
Chr6 exon 64575217 64575303 64575217 ID=MsG0680033423.01.T01:exon:5186;Parent=MsG0680033423.01.T01
Chr6 CDS 64573173 64573405 64573173 ID=MsG0680033423.01.T01:cds;Parent=MsG0680033423.01.T01
Chr6 CDS 64574988 64575141 64574988 ID=MsG0680033423.01.T01:cds;Parent=MsG0680033423.01.T01
Chr6 CDS 64575217 64575303 64575217 ID=MsG0680033423.01.T01:cds;Parent=MsG0680033423.01.T01
Gene Sequence

>MsG0680033423.01.T01

ATGGAACCACCTATCCTTGTCCCACCAGTGGAAGGAAGGCCTTTGATTATGTATCTGTCAGTGTTAGATGATTCCGTGGGTTGTGTTCTCGGTCAACAAGACGAGACTGGAAAGAAAGAACATGCTATCTACTATCTGAGCAAGAAATTCACTGACTGTGAGACTCGGTATACAATGCTTGAAAAGACTTGTTGTGCTTTAGCTTGGGCCGCCAAACGCCTGCGTCATATATGCTTGCCCTTGAACACTGAAACTGAGAATCTGAGTTTGGTTGATGAATGTGGTTGTATATGGGATTGCACCCTCCAGTTTGTTACACGCCCTCATGCTCACTTTAAGATTGGCGGTGGCTGGAACAGGATGGTCAAGGCTAGAAGGTTAAGGACGGACGTTGCTATCTATTTACCTTTTCTGTCGTTTGTTGTTTCACAGATCCTTGCTATCTGTCTTAGGATTTGGTCTTATGTTGTTTAA
Protein sequence

>MsG0680033423.01.T01

MEPPILVPPVEGRPLIMYLSVLDDSVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHICLPLNTETENLSLVDECGCIWDCTLQFVTRPHAHFKIGGGWNRMVKARRLRTDVAIYLPFLSFVVSQILAICLRIWSYVV*