Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028245.01.T01 | XP_003615282.1 | 93.725 | 255 | 14 | 2 | 1 | 255 | 1 | 253 | 1.44E-149 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028245.01.T01 | Q9LS08 | 39.32 | 206 | 81 | 5 | 33 | 220 | 128 | 307 | 6.31E-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480020591.01 | MsG0580028245.01 | 0.805663 | 1.197318e-49 | 6.371242e-47 |
| MsG0580027951.01 | MsG0580028245.01 | 0.860169 | 2.490665e-63 | 6.746633e-60 |
| MsG0580028245.01 | MsG0780040861.01 | 0.805864 | 1.086275e-49 | 5.810479e-47 |
| MsG0580028245.01 | MsG0780041161.01 | 0.808562 | 2.914665e-50 | 1.671910e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028245.01.T01 | MTR_5g066080 | 93.725 | 255 | 14 | 2 | 1 | 255 | 1 | 253 | 1.75e-153 | 427 |
| MsG0580028245.01.T01 | MTR_1g093750 | 37.864 | 206 | 93 | 4 | 31 | 232 | 152 | 326 | 4.09e-29 | 112 |
| MsG0580028245.01.T01 | MTR_2g091190 | 39.506 | 162 | 73 | 1 | 30 | 191 | 52 | 188 | 1.42e-24 | 98.6 |
| MsG0580028245.01.T01 | MTR_3g070970 | 30.542 | 203 | 100 | 3 | 31 | 223 | 67 | 238 | 1.66e-23 | 96.3 |
| MsG0580028245.01.T01 | MTR_5g032375 | 31.381 | 239 | 116 | 8 | 2 | 224 | 1 | 207 | 2.33e-23 | 94.7 |
| MsG0580028245.01.T01 | MTR_2g015890 | 30.942 | 223 | 123 | 3 | 33 | 255 | 63 | 254 | 4.32e-23 | 94.7 |
| MsG0580028245.01.T01 | MTR_4g079760 | 39.634 | 164 | 73 | 2 | 28 | 191 | 60 | 197 | 2.07e-21 | 90.5 |
| MsG0580028245.01.T01 | MTR_2g015890 | 38.060 | 134 | 55 | 2 | 33 | 166 | 63 | 168 | 1.39e-18 | 82.0 |
| MsG0580028245.01.T01 | MTR_4g087920 | 33.333 | 201 | 90 | 4 | 30 | 220 | 68 | 234 | 6.43e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028245.01.T01 | AT3G25710 | 39.320 | 206 | 81 | 5 | 33 | 220 | 128 | 307 | 6.44e-32 | 120 |
| MsG0580028245.01.T01 | AT3G56770 | 36.979 | 192 | 88 | 3 | 31 | 220 | 39 | 199 | 5.09e-31 | 115 |
| MsG0580028245.01.T01 | AT1G68810 | 41.304 | 184 | 76 | 3 | 9 | 191 | 152 | 304 | 1.89e-30 | 117 |
| MsG0580028245.01.T01 | AT2G41130 | 35.751 | 193 | 96 | 2 | 28 | 220 | 58 | 222 | 1.89e-26 | 103 |
| MsG0580028245.01.T01 | AT4G38070 | 35.465 | 172 | 78 | 4 | 29 | 199 | 83 | 222 | 1.75e-22 | 93.2 |
| MsG0580028245.01.T01 | AT2G40200 | 29.947 | 187 | 97 | 3 | 33 | 216 | 59 | 214 | 3.82e-20 | 87.0 |
| MsG0580028245.01.T01 | AT4G09820 | 41.333 | 75 | 43 | 1 | 26 | 100 | 350 | 423 | 9.74e-11 | 62.0 |
Find 84 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCCGGCCCAACAAAAT+TGG | 0.151635 | 5:+77182268 | None:intergenic |
| AACTGAGACATGGCCGTTTC+CGG | 0.216545 | 5:-77182608 | MsG0580028245.01.T01:CDS |
| AACCCGTAGAATCTTCTTAA+AGG | 0.270050 | 5:+77183137 | None:intergenic |
| CAACCTCACGAGCCCGTTTC+CGG | 0.275304 | 5:+77182254 | None:intergenic |
| GGAGAAGGAGGTAGAAGCTT+TGG | 0.321763 | 5:-77182347 | MsG0580028245.01.T01:CDS |
| AAGAAGCATGCAAGAGTCAT+AGG | 0.355128 | 5:-77183043 | MsG0580028245.01.T01:CDS |
| ACAAGCAATCCGTTCGGTTC+TGG | 0.360599 | 5:-77182470 | MsG0580028245.01.T01:CDS |
| AAAGGTGAAGGTGGTGATAA+TGG | 0.377501 | 5:-77182376 | MsG0580028245.01.T01:CDS |
| ACTGAGACATGGCCGTTTCC+GGG | 0.384662 | 5:-77182607 | MsG0580028245.01.T01:CDS |
| TTATCACCACCTTCACCTTT+AGG | 0.394483 | 5:+77182379 | None:intergenic |
| AGCTTTGGAAAGGGGTTTGA+AGG | 0.397072 | 5:-77182332 | MsG0580028245.01.T01:CDS |
| CCGTTCGGTTCTGGCGAAAC+CGG | 0.414266 | 5:-77182461 | MsG0580028245.01.T01:CDS |
| GGAGGTAGAAGCTTTGGAAA+GGG | 0.416970 | 5:-77182341 | MsG0580028245.01.T01:CDS |
| TGAAGGCTGTTATAGAGAAT+CGG | 0.425996 | 5:-77182315 | MsG0580028245.01.T01:CDS |
| TGAATGACCTTTGTGGTGTT+AGG | 0.434067 | 5:+77182957 | None:intergenic |
| GTTTCCGGCCCAACAAAATT+GGG | 0.435012 | 5:+77182269 | None:intergenic |
| GATTCTACGGGTTTGAGAGC+TGG | 0.437215 | 5:-77183127 | MsG0580028245.01.T01:CDS |
| CAACTGTGACAATTCAAAAT+CGG | 0.443233 | 5:-77183078 | MsG0580028245.01.T01:CDS |
| TATTGCGGTGGTAGAGAGGA+AGG | 0.446965 | 5:-77182559 | MsG0580028245.01.T01:CDS |
| GACAAAGAGTGTTGTGGTGG+TGG | 0.449486 | 5:-77182407 | MsG0580028245.01.T01:CDS |
| GAAGGCTGTTATAGAGAATC+GGG | 0.450367 | 5:-77182314 | MsG0580028245.01.T01:CDS |
| GTCATCATCTCCGCTCGAAC+CGG | 0.455212 | 5:+77182442 | None:intergenic |
| GGCGTCGTTGCTAGCGGAAG+TGG | 0.458288 | 5:-77182746 | MsG0580028245.01.T01:CDS |
| CCTCCTTTAAGAAGATTCTA+CGG | 0.460188 | 5:-77183140 | MsG0580028245.01.T01:CDS |
| GAAGAAGGAAGCCGATGAAA+TGG | 0.461603 | 5:-77182704 | MsG0580028245.01.T01:CDS |
| GAGGTAGAAGCTTTGGAAAG+GGG | 0.467743 | 5:-77182340 | MsG0580028245.01.T01:CDS |
| GGATTGCTTGTGTTAGATCA+TGG | 0.468042 | 5:+77182482 | None:intergenic |
| CTCCTTTAAGAAGATTCTAC+GGG | 0.475979 | 5:-77183139 | MsG0580028245.01.T01:CDS |
| TAATGGAAGAGAGGAGAAGG+AGG | 0.476276 | 5:-77182359 | MsG0580028245.01.T01:CDS |
| GTGACGATTCGCCATTTCAT+CGG | 0.480584 | 5:+77182693 | None:intergenic |
| CTTGTTGTTGAGGAAGAATG+AGG | 0.491130 | 5:-77182224 | MsG0580028245.01.T01:CDS |
| AAGTGGTGCAGCACGTGAAA+CGG | 0.496600 | 5:-77182729 | MsG0580028245.01.T01:CDS |
| TCTTCATGCAGCGGAGAACC+TGG | 0.503192 | 5:-77182652 | MsG0580028245.01.T01:CDS |
| AGGAGGTAGAAGCTTTGGAA+AGG | 0.513380 | 5:-77182342 | MsG0580028245.01.T01:CDS |
| TCGTCTGATTCTCCCGGAAA+CGG | 0.515198 | 5:+77182595 | None:intergenic |
| TGATAATGGAAGAGAGGAGA+AGG | 0.516421 | 5:-77182362 | MsG0580028245.01.T01:CDS |
| ATGGCGAATCGTCACAATGA+TGG | 0.517077 | 5:-77182685 | MsG0580028245.01.T01:CDS |
| AGAAGCATGCAAGAGTCATA+GGG | 0.522990 | 5:-77183042 | MsG0580028245.01.T01:CDS |
| GGGCCGGAAACGGGCTCGTG+AGG | 0.526347 | 5:-77182257 | MsG0580028245.01.T01:CDS |
| ACCTGGTTCAGTTAATTCTA+CGG | 0.531153 | 5:-77182635 | MsG0580028245.01.T01:CDS |
| GATGGATAATAAAGACTATG+AGG | 0.533000 | 5:-77183105 | MsG0580028245.01.T01:CDS |
| GAGTTATTGCGGTGGTAGAG+AGG | 0.542449 | 5:-77182563 | MsG0580028245.01.T01:CDS |
| TTGACCGTTCCTTGTTGTTG+AGG | 0.542986 | 5:-77182234 | MsG0580028245.01.T01:CDS |
| AGGTGGTGATAATGGAAGAG+AGG | 0.544625 | 5:-77182368 | MsG0580028245.01.T01:CDS |
| GCGGAGATGATGACGGTTGG+AGG | 0.548019 | 5:-77182433 | MsG0580028245.01.T01:CDS |
| GTCGCCTCGTCTGATTCTCC+CGG | 0.551846 | 5:+77182589 | None:intergenic |
| GTGGAGTGGCCTAAAGGTGA+AGG | 0.554899 | 5:-77182388 | MsG0580028245.01.T01:CDS |
| ATTGCGGTGGTAGAGAGGAA+GGG | 0.561452 | 5:-77182558 | MsG0580028245.01.T01:CDS |
| GCACGTGAAACGGTTGAAGA+AGG | 0.561695 | 5:-77182719 | MsG0580028245.01.T01:CDS |
| TTGCGGTGGTAGAGAGGAAG+GGG | 0.563178 | 5:-77182557 | MsG0580028245.01.T01:CDS |
| AGATGATGACGGTTGGAGGT+AGG | 0.573370 | 5:-77182429 | MsG0580028245.01.T01:CDS |
| AGGTTCTCCGCTGCATGAAG+AGG | 0.577024 | 5:+77182654 | None:intergenic |
| CTACGGGTTTGAGAGCTGGA+TGG | 0.582407 | 5:-77183123 | MsG0580028245.01.T01:CDS |
| GTGGTGGTGGAGTGGCCTAA+AGG | 0.584300 | 5:-77182394 | MsG0580028245.01.T01:CDS |
| CGAGCGGAGATGATGACGGT+TGG | 0.595891 | 5:-77182436 | MsG0580028245.01.T01:CDS |
| CTCATTCTTCCTCAACAACA+AGG | 0.601988 | 5:+77182225 | None:intergenic |
| CCGTAGAATCTTCTTAAAGG+AGG | 0.605275 | 5:+77183140 | None:intergenic |
| TCTAACACAAGCAATCCGTT+CGG | 0.605327 | 5:-77182476 | MsG0580028245.01.T01:CDS |
| TGACCTTTGTGGTGTTAGGA+AGG | 0.606748 | 5:+77182961 | None:intergenic |
| TCCGTAGAATTAACTGAACC+AGG | 0.607098 | 5:+77182634 | None:intergenic |
| GTTAGATCATGGTTCAGACT+CGG | 0.608951 | 5:+77182493 | None:intergenic |
| AATGGAATGAATGACCTTTG+TGG | 0.614221 | 5:+77182950 | None:intergenic |
| TCTGGCGAAACCGGTTCGAG+CGG | 0.618429 | 5:-77182452 | MsG0580028245.01.T01:CDS |
| GGATAAGGCGTCGTTGCTAG+CGG | 0.625854 | 5:-77182752 | MsG0580028245.01.T01:CDS |
| GAGTCTTCCTCTTCATGCAG+CGG | 0.627449 | 5:-77182661 | MsG0580028245.01.T01:CDS |
| AGAGTCATAGGGAAGCTGAA+AGG | 0.630828 | 5:-77183031 | MsG0580028245.01.T01:CDS |
| CCGGTTTCGCCAGAACCGAA+CGG | 0.637182 | 5:+77182461 | None:intergenic |
| GTAGAGAGGAAGGGGAACCA+CGG | 0.640152 | 5:-77182549 | MsG0580028245.01.T01:CDS |
| ACCGTCACTTTCATCCTCCG+TGG | 0.641892 | 5:+77182532 | None:intergenic |
| CTACGGAGGTAACTGAGACA+TGG | 0.643428 | 5:-77182618 | MsG0580028245.01.T01:CDS |
| GAGTGGCCTAAAGGTGAAGG+TGG | 0.645085 | 5:-77182385 | MsG0580028245.01.T01:CDS |
| TCTTCCTCAACAACAAGGAA+CGG | 0.645939 | 5:+77182230 | None:intergenic |
| AGAGTGTTGTGGTGGTGGAG+TGG | 0.646685 | 5:-77182402 | MsG0580028245.01.T01:CDS |
| GGTTCGAGCGGAGATGATGA+CGG | 0.656508 | 5:-77182440 | MsG0580028245.01.T01:CDS |
| TAGGACAAAGAGTGTTGTGG+TGG | 0.658865 | 5:-77182410 | MsG0580028245.01.T01:CDS |
| GAAAGTGACGGTGTGTTGTG+AGG | 0.659565 | 5:-77182521 | MsG0580028245.01.T01:CDS |
| GAGGCGACAGTGAGTTATTG+CGG | 0.669787 | 5:-77182574 | MsG0580028245.01.T01:CDS |
| GAGAGGAAGGGGAACCACGG+AGG | 0.671020 | 5:-77182546 | MsG0580028245.01.T01:CDS |
| AGGTAGGACAAAGAGTGTTG+TGG | 0.684138 | 5:-77182413 | MsG0580028245.01.T01:CDS |
| TGGTTCAGTTAATTCTACGG+AGG | 0.696147 | 5:-77182632 | MsG0580028245.01.T01:CDS |
| ACCACGGAGGATGAAAGTGA+CGG | 0.697201 | 5:-77182533 | MsG0580028245.01.T01:CDS |
| TCTCCTTCCTAACACCACAA+AGG | 0.703951 | 5:-77182964 | MsG0580028245.01.T01:intron |
| GCGACAGTGAGTTATTGCGG+TGG | 0.734204 | 5:-77182571 | MsG0580028245.01.T01:CDS |
| GTTTCCGGGAGAATCAGACG+AGG | 0.775354 | 5:-77182593 | MsG0580028245.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATATCTGTTTTAG+TGG | - | Chr5:77182529-77182548 | MsG0580028245.01.T01:CDS | 15.0% |
| !!! | TCATTTGTTTCTTATAAAAA+AGG | + | Chr5:77182483-77182502 | None:intergenic | 15.0% |
| ! | AAGAATGTGAAGTTATGAAA+TGG | + | Chr5:77182435-77182454 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | Chr5:77182504-77182523 | MsG0580028245.01.T01:CDS | 25.0% |
| !!! | AAAAATATCTGTTTTAGTGG+TGG | - | Chr5:77182532-77182551 | MsG0580028245.01.T01:CDS | 25.0% |
| !!! | TATGTTATTTTATGTGCAGT+CGG | - | Chr5:77182586-77182605 | MsG0580028245.01.T01:CDS | 25.0% |
| CAACTGTGACAATTCAAAAT+CGG | - | Chr5:77182281-77182300 | MsG0580028245.01.T01:CDS | 30.0% | |
| GATGGATAATAAAGACTATG+AGG | - | Chr5:77182254-77182273 | MsG0580028245.01.T01:CDS | 30.0% | |
| TCTTATAAAAAAGGACCTGA+GGG | + | Chr5:77182474-77182493 | None:intergenic | 30.0% | |
| TGTGAAGTTATGAAATGGAA+TGG | + | Chr5:77182430-77182449 | None:intergenic | 30.0% | |
| TTCTTATAAAAAAGGACCTG+AGG | + | Chr5:77182475-77182494 | None:intergenic | 30.0% | |
| AACCCGTAGAATCTTCTTAA+AGG | + | Chr5:77182225-77182244 | None:intergenic | 35.0% | |
| AATGGAATGAATGACCTTTG+TGG | + | Chr5:77182412-77182431 | None:intergenic | 35.0% | |
| ACCTGGTTCAGTTAATTCTA+CGG | - | Chr5:77182724-77182743 | MsG0580028245.01.T01:CDS | 35.0% | |
| TGAAGGCTGTTATAGAGAAT+CGG | - | Chr5:77183044-77183063 | MsG0580028245.01.T01:CDS | 35.0% | |
| ! | ATTTTATGTGCAGTCGGATA+AGG | - | Chr5:77182592-77182611 | MsG0580028245.01.T01:CDS | 35.0% |
| ! | CCTCCTTTAAGAAGATTCTA+CGG | - | Chr5:77182219-77182238 | MsG0580028245.01.T01:CDS | 35.0% |
| ! | CTCCTTTAAGAAGATTCTAC+GGG | - | Chr5:77182220-77182239 | MsG0580028245.01.T01:CDS | 35.0% |
| AAAGGTGAAGGTGGTGATAA+TGG | - | Chr5:77182983-77183002 | MsG0580028245.01.T01:CDS | 40.0% | |
| CCGTAGAATCTTCTTAAAGG+AGG | + | Chr5:77182222-77182241 | None:intergenic | 40.0% | |
| CTCATTCTTCCTCAACAACA+AGG | + | Chr5:77183137-77183156 | None:intergenic | 40.0% | |
| GAAGGCTGTTATAGAGAATC+GGG | - | Chr5:77183045-77183064 | MsG0580028245.01.T01:CDS | 40.0% | |
| GGATTGCTTGTGTTAGATCA+TGG | + | Chr5:77182880-77182899 | None:intergenic | 40.0% | |
| GTTAGATCATGGTTCAGACT+CGG | + | Chr5:77182869-77182888 | None:intergenic | 40.0% | |
| TCCGTAGAATTAACTGAACC+AGG | + | Chr5:77182728-77182747 | None:intergenic | 40.0% | |
| TCTAACACAAGCAATCCGTT+CGG | - | Chr5:77182883-77182902 | MsG0580028245.01.T01:intron | 40.0% | |
| TCTTCCTCAACAACAAGGAA+CGG | + | Chr5:77183132-77183151 | None:intergenic | 40.0% | |
| TGAATGACCTTTGTGGTGTT+AGG | + | Chr5:77182405-77182424 | None:intergenic | 40.0% | |
| TGCAAAAATACTAGTCCCTC+AGG | - | Chr5:77182456-77182475 | MsG0580028245.01.T01:CDS | 40.0% | |
| TGGTTCAGTTAATTCTACGG+AGG | - | Chr5:77182727-77182746 | MsG0580028245.01.T01:CDS | 40.0% | |
| TTATCACCACCTTCACCTTT+AGG | + | Chr5:77182983-77183002 | None:intergenic | 40.0% | |
| ! | AAGAAGCATGCAAGAGTCAT+AGG | - | Chr5:77182316-77182335 | MsG0580028245.01.T01:CDS | 40.0% |
| ! | AGAAGCATGCAAGAGTCATA+GGG | - | Chr5:77182317-77182336 | MsG0580028245.01.T01:CDS | 40.0% |
| ! | TATAGAGAATCGGGCTTTTG+TGG | - | Chr5:77183054-77183073 | MsG0580028245.01.T01:CDS | 40.0% |
| !! | CTTGTTGTTGAGGAAGAATG+AGG | - | Chr5:77183135-77183154 | MsG0580028245.01.T01:CDS | 40.0% |
| !! | TGATAATGGAAGAGAGGAGA+AGG | - | Chr5:77182997-77183016 | MsG0580028245.01.T01:CDS | 40.0% |
| AGAGTCATAGGGAAGCTGAA+AGG | - | Chr5:77182328-77182347 | MsG0580028245.01.T01:CDS | 45.0% | |
| ATGGCGAATCGTCACAATGA+TGG | - | Chr5:77182674-77182693 | MsG0580028245.01.T01:CDS | 45.0% | |
| GAAGAAGGAAGCCGATGAAA+TGG | - | Chr5:77182655-77182674 | MsG0580028245.01.T01:CDS | 45.0% | |
| GTGACGATTCGCCATTTCAT+CGG | + | Chr5:77182669-77182688 | None:intergenic | 45.0% | |
| GTTTCCGGCCCAACAAAATT+GGG | + | Chr5:77183093-77183112 | None:intergenic | 45.0% | |
| TAATGGAAGAGAGGAGAAGG+AGG | - | Chr5:77183000-77183019 | MsG0580028245.01.T01:CDS | 45.0% | |
| TCTCCTTCCTAACACCACAA+AGG | - | Chr5:77182395-77182414 | MsG0580028245.01.T01:CDS | 45.0% | |
| ! | AATCGGGCTTTTGTGGATTC+TGG | - | Chr5:77183061-77183080 | MsG0580028245.01.T01:CDS | 45.0% |
| ! | AATTTTGTTGGGCCGGAAAC+GGG | - | Chr5:77183093-77183112 | MsG0580028245.01.T01:CDS | 45.0% |
| ! | ATCGGGCTTTTGTGGATTCT+GGG | - | Chr5:77183062-77183081 | MsG0580028245.01.T01:CDS | 45.0% |
| ! | CAATTTTGTTGGGCCGGAAA+CGG | - | Chr5:77183092-77183111 | MsG0580028245.01.T01:CDS | 45.0% |
| ! | TGACCTTTGTGGTGTTAGGA+AGG | + | Chr5:77182401-77182420 | None:intergenic | 45.0% |
| !! | AGCTTTGGAAAGGGGTTTGA+AGG | - | Chr5:77183027-77183046 | MsG0580028245.01.T01:CDS | 45.0% |
| !! | AGGAGGTAGAAGCTTTGGAA+AGG | - | Chr5:77183017-77183036 | MsG0580028245.01.T01:CDS | 45.0% |
| !! | AGGTAGGACAAAGAGTGTTG+TGG | - | Chr5:77182946-77182965 | MsG0580028245.01.T01:intron | 45.0% |
| !! | AGGTGGTGATAATGGAAGAG+AGG | - | Chr5:77182991-77183010 | MsG0580028245.01.T01:CDS | 45.0% |
| !! | GAGGTAGAAGCTTTGGAAAG+GGG | - | Chr5:77183019-77183038 | MsG0580028245.01.T01:CDS | 45.0% |
| !! | GGAGGTAGAAGCTTTGGAAA+GGG | - | Chr5:77183018-77183037 | MsG0580028245.01.T01:CDS | 45.0% |
| !! | TAGGACAAAGAGTGTTGTGG+TGG | - | Chr5:77182949-77182968 | MsG0580028245.01.T01:intron | 45.0% |
| !! | TTGACCGTTCCTTGTTGTTG+AGG | - | Chr5:77183125-77183144 | MsG0580028245.01.T01:CDS | 45.0% |
| !! | TTTAGTGGTGGCTCTGAACA+CGG | - | Chr5:77182544-77182563 | MsG0580028245.01.T01:CDS | 45.0% |
| !!! | GCTTTTGTGGATTCTGGGAT+GGG | - | Chr5:77183067-77183086 | MsG0580028245.01.T01:CDS | 45.0% |
| AACTGAGACATGGCCGTTTC+CGG | - | Chr5:77182751-77182770 | MsG0580028245.01.T01:CDS | 50.0% | |
| AAGTGGTGCAGCACGTGAAA+CGG | - | Chr5:77182630-77182649 | MsG0580028245.01.T01:CDS | 50.0% | |
| ACAAGCAATCCGTTCGGTTC+TGG | - | Chr5:77182889-77182908 | MsG0580028245.01.T01:intron | 50.0% | |
| ACCACGGAGGATGAAAGTGA+CGG | - | Chr5:77182826-77182845 | MsG0580028245.01.T01:intron | 50.0% | |
| ATTGCGGTGGTAGAGAGGAA+GGG | - | Chr5:77182801-77182820 | MsG0580028245.01.T01:intron | 50.0% | |
| CGTTTCCGGCCCAACAAAAT+TGG | + | Chr5:77183094-77183113 | None:intergenic | 50.0% | |
| CTACGGAGGTAACTGAGACA+TGG | - | Chr5:77182741-77182760 | MsG0580028245.01.T01:CDS | 50.0% | |
| GAAAGTGACGGTGTGTTGTG+AGG | - | Chr5:77182838-77182857 | MsG0580028245.01.T01:intron | 50.0% | |
| GAGGCGACAGTGAGTTATTG+CGG | - | Chr5:77182785-77182804 | MsG0580028245.01.T01:intron | 50.0% | |
| GAGTCTTCCTCTTCATGCAG+CGG | - | Chr5:77182698-77182717 | MsG0580028245.01.T01:CDS | 50.0% | |
| GAGTTATTGCGGTGGTAGAG+AGG | - | Chr5:77182796-77182815 | MsG0580028245.01.T01:intron | 50.0% | |
| GATTCTACGGGTTTGAGAGC+TGG | - | Chr5:77182232-77182251 | MsG0580028245.01.T01:CDS | 50.0% | |
| GCACGTGAAACGGTTGAAGA+AGG | - | Chr5:77182640-77182659 | MsG0580028245.01.T01:CDS | 50.0% | |
| GGAGAAGGAGGTAGAAGCTT+TGG | - | Chr5:77183012-77183031 | MsG0580028245.01.T01:CDS | 50.0% | |
| TATTGCGGTGGTAGAGAGGA+AGG | - | Chr5:77182800-77182819 | MsG0580028245.01.T01:intron | 50.0% | |
| TCGTCTGATTCTCCCGGAAA+CGG | + | Chr5:77182767-77182786 | None:intergenic | 50.0% | |
| ! | GGGATGGGCCCAATTTTGTT+GGG | - | Chr5:77183082-77183101 | MsG0580028245.01.T01:CDS | 50.0% |
| ! | TGGGATGGGCCCAATTTTGT+TGG | - | Chr5:77183081-77183100 | MsG0580028245.01.T01:CDS | 50.0% |
| !! | AGATGATGACGGTTGGAGGT+AGG | - | Chr5:77182930-77182949 | MsG0580028245.01.T01:intron | 50.0% |
| !! | GACAAAGAGTGTTGTGGTGG+TGG | - | Chr5:77182952-77182971 | MsG0580028245.01.T01:intron | 50.0% |
| !! | GGCTTTTGTGGATTCTGGGA+TGG | - | Chr5:77183066-77183085 | MsG0580028245.01.T01:CDS | 50.0% |
| ACTGAGACATGGCCGTTTCC+GGG | - | Chr5:77182752-77182771 | MsG0580028245.01.T01:CDS | 55.0% | |
| AGGTTCTCCGCTGCATGAAG+AGG | + | Chr5:77182708-77182727 | None:intergenic | 55.0% | |
| CTACGGGTTTGAGAGCTGGA+TGG | - | Chr5:77182236-77182255 | MsG0580028245.01.T01:CDS | 55.0% | |
| GAGTGGCCTAAAGGTGAAGG+TGG | - | Chr5:77182974-77182993 | MsG0580028245.01.T01:CDS | 55.0% | |
| GCGACAGTGAGTTATTGCGG+TGG | - | Chr5:77182788-77182807 | MsG0580028245.01.T01:intron | 55.0% | |
| GGTTCGAGCGGAGATGATGA+CGG | - | Chr5:77182919-77182938 | MsG0580028245.01.T01:intron | 55.0% | |
| GTAGAGAGGAAGGGGAACCA+CGG | - | Chr5:77182810-77182829 | MsG0580028245.01.T01:intron | 55.0% | |
| GTCATCATCTCCGCTCGAAC+CGG | + | Chr5:77182920-77182939 | None:intergenic | 55.0% | |
| GTGGAGTGGCCTAAAGGTGA+AGG | - | Chr5:77182971-77182990 | MsG0580028245.01.T01:CDS | 55.0% | |
| GTTTCCGGGAGAATCAGACG+AGG | - | Chr5:77182766-77182785 | MsG0580028245.01.T01:intron | 55.0% | |
| TCTTCATGCAGCGGAGAACC+TGG | - | Chr5:77182707-77182726 | MsG0580028245.01.T01:CDS | 55.0% | |
| TTGCGGTGGTAGAGAGGAAG+GGG | - | Chr5:77182802-77182821 | MsG0580028245.01.T01:intron | 55.0% | |
| ! | ACCGTCACTTTCATCCTCCG+TGG | + | Chr5:77182830-77182849 | None:intergenic | 55.0% |
| ! | TGGGCCCAATTTTGTTGGGC+CGG | - | Chr5:77183086-77183105 | MsG0580028245.01.T01:CDS | 55.0% |
| !! | AGAGTGTTGTGGTGGTGGAG+TGG | - | Chr5:77182957-77182976 | MsG0580028245.01.T01:intron | 55.0% |
| !! | GGATAAGGCGTCGTTGCTAG+CGG | - | Chr5:77182607-77182626 | MsG0580028245.01.T01:CDS | 55.0% |
| CAACCTCACGAGCCCGTTTC+CGG | + | Chr5:77183108-77183127 | None:intergenic | 60.0% | |
| CCGGTTTCGCCAGAACCGAA+CGG | + | Chr5:77182901-77182920 | None:intergenic | 60.0% | |
| GTCGCCTCGTCTGATTCTCC+CGG | + | Chr5:77182773-77182792 | None:intergenic | 60.0% | |
| ! | CCGTTCGGTTCTGGCGAAAC+CGG | - | Chr5:77182898-77182917 | MsG0580028245.01.T01:intron | 60.0% |
| !! | CGAGCGGAGATGATGACGGT+TGG | - | Chr5:77182923-77182942 | MsG0580028245.01.T01:intron | 60.0% |
| !! | GCGGAGATGATGACGGTTGG+AGG | - | Chr5:77182926-77182945 | MsG0580028245.01.T01:intron | 60.0% |
| !! | GTGGTGGTGGAGTGGCCTAA+AGG | - | Chr5:77182965-77182984 | MsG0580028245.01.T01:CDS | 60.0% |
| !! | TCTGGCGAAACCGGTTCGAG+CGG | - | Chr5:77182907-77182926 | MsG0580028245.01.T01:intron | 60.0% |
| GAGAGGAAGGGGAACCACGG+AGG | - | Chr5:77182813-77182832 | MsG0580028245.01.T01:intron | 65.0% | |
| GGCGTCGTTGCTAGCGGAAG+TGG | - | Chr5:77182613-77182632 | MsG0580028245.01.T01:CDS | 65.0% | |
| ! | GGGCCGGAAACGGGCTCGTG+AGG | - | Chr5:77183102-77183121 | MsG0580028245.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 77182213 | 77183168 | 77182213 | ID=MsG0580028245.01;Name=MsG0580028245.01 |
| Chr5 | mRNA | 77182213 | 77183168 | 77182213 | ID=MsG0580028245.01.T01;Parent=MsG0580028245.01;Name=MsG0580028245.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|2|0|255 |
| Chr5 | exon | 77182965 | 77183168 | 77182965 | ID=MsG0580028245.01.T01:exon:46297;Parent=MsG0580028245.01.T01 |
| Chr5 | exon | 77182213 | 77182776 | 77182213 | ID=MsG0580028245.01.T01:exon:46296;Parent=MsG0580028245.01.T01 |
| Chr5 | CDS | 77182965 | 77183168 | 77182965 | ID=MsG0580028245.01.T01:cds;Parent=MsG0580028245.01.T01 |
| Chr5 | CDS | 77182213 | 77182776 | 77182213 | ID=MsG0580028245.01.T01:cds;Parent=MsG0580028245.01.T01 |
| Gene Sequence |
| Protein sequence |
