Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027951.01.T01 | XP_003615282.1 | 93.701 | 254 | 15 | 1 | 1 | 254 | 1 | 253 | 1.26E-150 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027951.01.T01 | Q9LS08 | 38.049 | 205 | 84 | 4 | 33 | 219 | 128 | 307 | 3.12E-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027951.01.T01 | G7KBK5 | 93.701 | 254 | 15 | 1 | 1 | 254 | 1 | 253 | 6.00e-151 | 430 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047912.01 | MsG0580027951.01 | 0.804682 | 1.921517e-49 | 9.970051e-47 |
| MsG0080048764.01 | MsG0580027951.01 | 0.805895 | 1.070209e-49 | 5.728932e-47 |
| MsG0180001006.01 | MsG0580027951.01 | 0.816516 | 5.311283e-52 | 3.771470e-49 |
| MsG0180003671.01 | MsG0580027951.01 | 0.805098 | 1.573007e-49 | 8.249520e-47 |
| MsG0180004388.01 | MsG0580027951.01 | 0.802246 | 6.144699e-49 | 2.995367e-46 |
| MsG0180004689.01 | MsG0580027951.01 | 0.801614 | 8.284300e-49 | 3.973822e-46 |
| MsG0180006143.01 | MsG0580027951.01 | 0.803422 | 3.512234e-49 | 1.764280e-46 |
| MsG0280006313.01 | MsG0580027951.01 | 0.804877 | 1.749458e-49 | 9.123957e-47 |
| MsG0280010551.01 | MsG0580027951.01 | 0.807164 | 5.777342e-50 | 3.195030e-47 |
| MsG0480018637.01 | MsG0580027951.01 | 0.816114 | 6.534227e-52 | 4.589299e-49 |
| MsG0480018787.01 | MsG0580027951.01 | 0.813798 | 2.132297e-51 | 1.406156e-48 |
| MsG0480020591.01 | MsG0580027951.01 | 0.815536 | 8.792263e-52 | 6.078199e-49 |
| MsG0480021274.01 | MsG0580027951.01 | 0.809288 | 2.037499e-50 | 1.191534e-47 |
| MsG0480021953.01 | MsG0580027951.01 | 0.816323 | 5.867141e-52 | 4.144562e-49 |
| MsG0480022480.01 | MsG0580027951.01 | 0.809837 | 1.552875e-50 | 9.214721e-48 |
| MsG0480023245.01 | MsG0580027951.01 | 0.817105 | 3.918536e-52 | 2.827725e-49 |
| MsG0580024374.01 | MsG0580027951.01 | 0.815635 | 8.356519e-52 | 5.792993e-49 |
| MsG0380015779.01 | MsG0580027951.01 | 0.830833 | 2.350960e-55 | 2.505926e-52 |
| MsG0380016227.01 | MsG0580027951.01 | 0.812084 | 5.064894e-51 | 3.189723e-48 |
| MsG0380016752.01 | MsG0580027951.01 | 0.809619 | 1.730046e-50 | 1.020750e-47 |
| MsG0380016971.01 | MsG0580027951.01 | 0.816717 | 4.788068e-52 | 3.418764e-49 |
| MsG0380017146.01 | MsG0580027951.01 | 0.807010 | 6.226656e-50 | 3.429794e-47 |
| MsG0380017631.01 | MsG0580027951.01 | 0.800598 | 1.337003e-48 | 6.250764e-46 |
| MsG0380018009.01 | MsG0580027951.01 | 0.822134 | 2.787272e-53 | 2.312767e-50 |
| MsG0480018126.01 | MsG0580027951.01 | 0.801886 | 7.288172e-49 | 3.520408e-46 |
| MsG0480018163.01 | MsG0580027951.01 | 0.805139 | 1.542176e-49 | 8.096553e-47 |
| MsG0580027169.01 | MsG0580027951.01 | 0.812349 | 4.434595e-51 | 2.812929e-48 |
| MsG0580027951.01 | MsG0580028245.01 | 0.860169 | 2.490665e-63 | 6.746633e-60 |
| MsG0580027951.01 | MsG0580029762.01 | 0.802915 | 4.472103e-49 | 2.217497e-46 |
| MsG0580027951.01 | MsG0580030235.01 | 0.817099 | 3.931575e-52 | 2.836625e-49 |
| MsG0580027951.01 | MsG0680030685.01 | 0.804290 | 2.318979e-49 | 1.191143e-46 |
| MsG0580027951.01 | MsG0680031651.01 | 0.813228 | 2.846548e-51 | 1.848202e-48 |
| MsG0580027951.01 | MsG0680035346.01 | 0.800822 | 1.203664e-48 | 5.659302e-46 |
| MsG0580027951.01 | MsG0780036609.01 | 0.837285 | 5.688749e-57 | 7.354453e-54 |
| MsG0580027951.01 | MsG0780039952.01 | 0.803044 | 4.206066e-49 | 2.092317e-46 |
| MsG0580027951.01 | MsG0780040861.01 | 0.845768 | 3.304428e-59 | 5.566656e-56 |
| MsG0580027951.01 | MsG0780041065.01 | 0.804770 | 1.841495e-49 | 9.576845e-47 |
| MsG0580027951.01 | MsG0780041161.01 | 0.839666 | 1.382092e-57 | 1.921979e-54 |
| MsG0580027951.01 | MsG0780041222.01 | 0.800932 | 1.142903e-48 | 5.388982e-46 |
| MsG0580027951.01 | MsG0780041399.01 | 0.804872 | 1.753786e-49 | 9.145322e-47 |
| MsG0580027951.01 | MsG0880043592.01 | 0.809872 | 1.526317e-50 | 9.065108e-48 |
| MsG0580027951.01 | MsG0880046479.01 | 0.811061 | 8.452279e-51 | 5.180346e-48 |
| MsG0580027951.01 | MsG0880046973.01 | 0.801259 | 9.796667e-49 | 4.657504e-46 |
| MsG0280007088.01 | MsG0580027951.01 | 0.820974 | 5.164259e-53 | 4.147941e-50 |
| MsG0280007609.01 | MsG0580027951.01 | 0.814234 | 1.708800e-51 | 1.140291e-48 |
| MsG0280007815.01 | MsG0580027951.01 | 0.809312 | 2.013359e-50 | 1.178143e-47 |
| MsG0280008907.01 | MsG0580027951.01 | 0.826072 | 3.314805e-54 | 3.076377e-51 |
| MsG0280008971.01 | MsG0580027951.01 | 0.807235 | 5.580701e-50 | 3.092052e-47 |
| MsG0280010389.01 | MsG0580027951.01 | 0.801400 | 9.165505e-49 | 4.372835e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027951.01.T01 | MTR_5g066080 | 93.701 | 254 | 15 | 1 | 1 | 254 | 1 | 253 | 1.52e-154 | 430 |
| MsG0580027951.01.T01 | MTR_1g093750 | 38.350 | 206 | 91 | 4 | 31 | 231 | 152 | 326 | 2.50e-29 | 113 |
| MsG0580027951.01.T01 | MTR_3g070970 | 32.020 | 203 | 96 | 3 | 31 | 222 | 67 | 238 | 2.92e-25 | 100 |
| MsG0580027951.01.T01 | MTR_5g032375 | 31.513 | 238 | 116 | 7 | 2 | 223 | 1 | 207 | 8.06e-25 | 98.6 |
| MsG0580027951.01.T01 | MTR_2g091190 | 40.123 | 162 | 71 | 2 | 30 | 190 | 52 | 188 | 1.40e-23 | 95.9 |
| MsG0580027951.01.T01 | MTR_2g015890 | 31.081 | 222 | 123 | 3 | 33 | 254 | 63 | 254 | 4.31e-23 | 94.7 |
| MsG0580027951.01.T01 | MTR_4g079760 | 39.024 | 164 | 73 | 3 | 28 | 190 | 60 | 197 | 2.80e-19 | 84.7 |
| MsG0580027951.01.T01 | MTR_2g015890 | 38.346 | 133 | 55 | 2 | 33 | 165 | 63 | 168 | 1.07e-18 | 82.0 |
| MsG0580027951.01.T01 | MTR_4g087920 | 34.000 | 200 | 89 | 4 | 30 | 219 | 68 | 234 | 7.09e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027951.01.T01 | AT3G56770 | 37.629 | 194 | 83 | 5 | 31 | 219 | 39 | 199 | 1.34e-30 | 114 |
| MsG0580027951.01.T01 | AT3G25710 | 38.049 | 205 | 84 | 4 | 33 | 219 | 128 | 307 | 3.18e-30 | 115 |
| MsG0580027951.01.T01 | AT1G68810 | 41.848 | 184 | 74 | 4 | 9 | 190 | 152 | 304 | 1.46e-29 | 114 |
| MsG0580027951.01.T01 | AT2G41130 | 35.751 | 193 | 95 | 3 | 28 | 219 | 58 | 222 | 7.70e-26 | 102 |
| MsG0580027951.01.T01 | AT4G38070 | 36.257 | 171 | 77 | 4 | 29 | 198 | 83 | 222 | 7.57e-23 | 94.4 |
| MsG0580027951.01.T01 | AT2G40200 | 29.508 | 183 | 102 | 3 | 33 | 215 | 59 | 214 | 2.00e-20 | 87.8 |
Find 80 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCGTAGAATCTTCTTAA+AGG | 0.270050 | 5:+71651540 | None:intergenic |
| CAACCTCACGAGCCCGTTTC+CGG | 0.275304 | 5:+71650619 | None:intergenic |
| CGCTAACAACGACGCCTTAT+CGG | 0.275455 | 5:+71651115 | None:intergenic |
| ACCTGGTTCGGTTAATTCTA+TGG | 0.293857 | 5:-71650997 | MsG0580027951.01.T01:CDS |
| GGAGAAGGAGGTAGAAGCTT+TGG | 0.321763 | 5:-71650712 | MsG0580027951.01.T01:CDS |
| CGTTTCCGGCCCAACAAAAT+CGG | 0.326862 | 5:+71650633 | None:intergenic |
| AAGAAGCATGCAAGAGTCAT+AGG | 0.355128 | 5:-71651446 | MsG0580027951.01.T01:CDS |
| GCTGAGACATGGCCGTTTCC+AGG | 0.358022 | 5:-71650969 | MsG0580027951.01.T01:CDS |
| ACAAGCAATCCGTTCGGTTC+TGG | 0.360599 | 5:-71650835 | MsG0580027951.01.T01:CDS |
| AAAGGTGAAGGTGGTGATAA+TGG | 0.377501 | 5:-71650741 | MsG0580027951.01.T01:CDS |
| TTATCACCACCTTCACCTTT+AGG | 0.394483 | 5:+71650744 | None:intergenic |
| AGCTTTGGAAAGGGGTTTGA+AGG | 0.397072 | 5:-71650697 | MsG0580027951.01.T01:CDS |
| CCGTTCGGTTCTGGCGAAAC+CGG | 0.414266 | 5:-71650826 | MsG0580027951.01.T01:CDS |
| GGAGGTAGAAGCTTTGGAAA+GGG | 0.416970 | 5:-71650706 | MsG0580027951.01.T01:CDS |
| TGAAGGCTGTTATAGAGAAT+CGG | 0.425996 | 5:-71650680 | MsG0580027951.01.T01:CDS |
| GGCGTCGTTGTTAGCGGAAG+TGG | 0.431203 | 5:-71651108 | MsG0580027951.01.T01:CDS |
| TGAATGACCTTTGTGGTGTT+AGG | 0.434067 | 5:+71651360 | None:intergenic |
| GATTCTACGGGTTTGAGAGC+TGG | 0.437215 | 5:-71651530 | MsG0580027951.01.T01:CDS |
| CAACTGTGACAATTCAAAAT+CGG | 0.443233 | 5:-71651481 | MsG0580027951.01.T01:CDS |
| GACAAAGAGTGTTGTGGTGG+TGG | 0.449486 | 5:-71650772 | MsG0580027951.01.T01:CDS |
| GAAGGCTGTTATAGAGAATC+GGG | 0.450367 | 5:-71650679 | MsG0580027951.01.T01:CDS |
| GTCATCATCTCCGCTCGAAC+CGG | 0.455212 | 5:+71650807 | None:intergenic |
| CCTCCTTTAAGAAGATTCTA+CGG | 0.460188 | 5:-71651543 | MsG0580027951.01.T01:CDS |
| GAAGAAGGAAGCTGATGAAA+TGG | 0.465712 | 5:-71651066 | MsG0580027951.01.T01:CDS |
| GAGGTAGAAGCTTTGGAAAG+GGG | 0.467743 | 5:-71650705 | MsG0580027951.01.T01:CDS |
| GGATTGCTTGTGTTAGATCA+TGG | 0.468042 | 5:+71650847 | None:intergenic |
| GTCGCCTCGTCTGATTCTCC+TGG | 0.474032 | 5:+71650951 | None:intergenic |
| CTCCTTTAAGAAGATTCTAC+GGG | 0.475979 | 5:-71651542 | MsG0580027951.01.T01:CDS |
| TAATGGAAGAGAGGAGAAGG+AGG | 0.476276 | 5:-71650724 | MsG0580027951.01.T01:CDS |
| CTTGTTGTTGAGGAAGAATG+AGG | 0.491130 | 5:-71650589 | MsG0580027951.01.T01:CDS |
| TCTTCATGCAGCGGAGAACC+TGG | 0.503192 | 5:-71651014 | MsG0580027951.01.T01:CDS |
| CGATAAGGCGTCGTTGTTAG+CGG | 0.504065 | 5:-71651114 | MsG0580027951.01.T01:CDS |
| GTTTCCGGCCCAACAAAATC+GGG | 0.508277 | 5:+71650634 | None:intergenic |
| AGGAGGTAGAAGCTTTGGAA+AGG | 0.513380 | 5:-71650707 | MsG0580027951.01.T01:CDS |
| AGTTATTGCGGCAGAGAGGA+AGG | 0.514601 | 5:-71650924 | MsG0580027951.01.T01:CDS |
| TGATAATGGAAGAGAGGAGA+AGG | 0.516421 | 5:-71650727 | MsG0580027951.01.T01:CDS |
| ATGGCGAATCGTCACAATGA+TGG | 0.517077 | 5:-71651047 | MsG0580027951.01.T01:CDS |
| AGAAGCATGCAAGAGTCATA+GGG | 0.522990 | 5:-71651445 | MsG0580027951.01.T01:CDS |
| GGGCCGGAAACGGGCTCGTG+AGG | 0.526347 | 5:-71650622 | MsG0580027951.01.T01:CDS |
| AAGTGGTGCAACACGTGAAA+CGG | 0.531203 | 5:-71651091 | MsG0580027951.01.T01:CDS |
| GATGGATAATAAAGACTATG+AGG | 0.533000 | 5:-71651508 | MsG0580027951.01.T01:CDS |
| TTGACCGTTCCTTGTTGTTG+AGG | 0.542986 | 5:-71650599 | MsG0580027951.01.T01:CDS |
| ATGCAGCGGAGAACCTGGTT+CGG | 0.543278 | 5:-71651009 | MsG0580027951.01.T01:CDS |
| AGGTGGTGATAATGGAAGAG+AGG | 0.544625 | 5:-71650733 | MsG0580027951.01.T01:CDS |
| GCGGAGATGATGACGGTTGG+AGG | 0.548019 | 5:-71650798 | MsG0580027951.01.T01:CDS |
| GTGGAGTGGCCTAAAGGTGA+AGG | 0.554899 | 5:-71650753 | MsG0580027951.01.T01:CDS |
| TCGTCTGATTCTCCTGGAAA+CGG | 0.558339 | 5:+71650957 | None:intergenic |
| ACACGTGAAACGGTTGAAGA+AGG | 0.560709 | 5:-71651081 | MsG0580027951.01.T01:CDS |
| AGATGATGACGGTTGGAGGT+AGG | 0.573370 | 5:-71650794 | MsG0580027951.01.T01:CDS |
| AGGTTCTCCGCTGCATGAAG+AGG | 0.577024 | 5:+71651016 | None:intergenic |
| CTACGGGTTTGAGAGCTGGA+TGG | 0.582407 | 5:-71651526 | MsG0580027951.01.T01:CDS |
| GTGGTGGTGGAGTGGCCTAA+AGG | 0.584300 | 5:-71650759 | MsG0580027951.01.T01:CDS |
| TCCATAGAATTAACCGAACC+AGG | 0.589609 | 5:+71650996 | None:intergenic |
| CGAGCGGAGATGATGACGGT+TGG | 0.595891 | 5:-71650801 | MsG0580027951.01.T01:CDS |
| CTCATTCTTCCTCAACAACA+AGG | 0.601988 | 5:+71650590 | None:intergenic |
| CCGTAGAATCTTCTTAAAGG+AGG | 0.605275 | 5:+71651543 | None:intergenic |
| TCTAACACAAGCAATCCGTT+CGG | 0.605327 | 5:-71650841 | MsG0580027951.01.T01:CDS |
| TGACCTTTGTGGTGTTAGGA+AGG | 0.606748 | 5:+71651364 | None:intergenic |
| GTTAGATCATGGTTCAGACT+CGG | 0.608951 | 5:+71650858 | None:intergenic |
| CTATGGAGGTAGCTGAGACA+TGG | 0.609137 | 5:-71650980 | MsG0580027951.01.T01:CDS |
| AATGGAATGAATGACCTTTG+TGG | 0.614221 | 5:+71651353 | None:intergenic |
| TCTGGCGAAACCGGTTCGAG+CGG | 0.618429 | 5:-71650817 | MsG0580027951.01.T01:CDS |
| GAGTCTTCCTCTTCATGCAG+CGG | 0.627449 | 5:-71651023 | MsG0580027951.01.T01:CDS |
| AGAGTCATAGGGAAGCTGAA+AGG | 0.630828 | 5:-71651434 | MsG0580027951.01.T01:CDS |
| CCGGTTTCGCCAGAACCGAA+CGG | 0.637182 | 5:+71650826 | None:intergenic |
| GAGTGGCCTAAAGGTGAAGG+TGG | 0.645085 | 5:-71650750 | MsG0580027951.01.T01:CDS |
| GCAGAGAGGAAGGAGAACCA+CGG | 0.645622 | 5:-71650914 | MsG0580027951.01.T01:CDS |
| TCTTCCTCAACAACAAGGAA+CGG | 0.645939 | 5:+71650595 | None:intergenic |
| AGAGTGTTGTGGTGGTGGAG+TGG | 0.646685 | 5:-71650767 | MsG0580027951.01.T01:CDS |
| ACTGTCACTTTCATCCTCCG+TGG | 0.656210 | 5:+71650897 | None:intergenic |
| GGTTCGAGCGGAGATGATGA+CGG | 0.656508 | 5:-71650805 | MsG0580027951.01.T01:CDS |
| GAGGCGACAGTGAGTTATTG+CGG | 0.657187 | 5:-71650936 | MsG0580027951.01.T01:CDS |
| TAGGACAAAGAGTGTTGTGG+TGG | 0.658865 | 5:-71650775 | MsG0580027951.01.T01:CDS |
| TGGTTCGGTTAATTCTATGG+AGG | 0.666132 | 5:-71650994 | MsG0580027951.01.T01:CDS |
| AGTGAGTTATTGCGGCAGAG+AGG | 0.669057 | 5:-71650928 | MsG0580027951.01.T01:CDS |
| AGGTAGGACAAAGAGTGTTG+TGG | 0.684138 | 5:-71650778 | MsG0580027951.01.T01:CDS |
| TCTCCTTCCTAACACCACAA+AGG | 0.703951 | 5:-71651367 | MsG0580027951.01.T01:intron |
| GAAAGTGACAGTGTGTTGTG+AGG | 0.711096 | 5:-71650886 | MsG0580027951.01.T01:CDS |
| GAGAGGAAGGAGAACCACGG+AGG | 0.734471 | 5:-71650911 | MsG0580027951.01.T01:CDS |
| GTTTCCAGGAGAATCAGACG+AGG | 0.774251 | 5:-71650955 | MsG0580027951.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATATCTGTTTTAG+TGG | - | Chr5:71650935-71650954 | MsG0580027951.01.T01:CDS | 15.0% |
| !!! | TCATTTGTTTCTTATAAAAA+AGG | + | Chr5:71650848-71650867 | None:intergenic | 15.0% |
| ! | AAATGAGTCAACAAAAGTTA+AGG | - | Chr5:71650862-71650881 | MsG0580027951.01.T01:CDS | 25.0% |
| ! | AAGAATGTGAAGTTATGAAA+TGG | + | Chr5:71650800-71650819 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | Chr5:71650910-71650929 | MsG0580027951.01.T01:CDS | 25.0% |
| !!! | AAAAATATCTGTTTTAGTGG+TGG | - | Chr5:71650938-71650957 | MsG0580027951.01.T01:CDS | 25.0% |
| CAACTGTGACAATTCAAAAT+CGG | - | Chr5:71650646-71650665 | MsG0580027951.01.T01:CDS | 30.0% | |
| GATGGATAATAAAGACTATG+AGG | - | Chr5:71650619-71650638 | MsG0580027951.01.T01:CDS | 30.0% | |
| TCTTATAAAAAAGGACCTGA+GGG | + | Chr5:71650839-71650858 | None:intergenic | 30.0% | |
| TGTGAAGTTATGAAATGGAA+TGG | + | Chr5:71650795-71650814 | None:intergenic | 30.0% | |
| TTCTTATAAAAAAGGACCTG+AGG | + | Chr5:71650840-71650859 | None:intergenic | 30.0% | |
| AACCCGTAGAATCTTCTTAA+AGG | + | Chr5:71650590-71650609 | None:intergenic | 35.0% | |
| AATGGAATGAATGACCTTTG+TGG | + | Chr5:71650777-71650796 | None:intergenic | 35.0% | |
| TGAAGGCTGTTATAGAGAAT+CGG | - | Chr5:71651447-71651466 | MsG0580027951.01.T01:CDS | 35.0% | |
| ! | ATTTTATGTGCAGTCCGATA+AGG | - | Chr5:71650998-71651017 | MsG0580027951.01.T01:CDS | 35.0% |
| ! | CCTCCTTTAAGAAGATTCTA+CGG | - | Chr5:71650584-71650603 | MsG0580027951.01.T01:CDS | 35.0% |
| ! | CTCCTTTAAGAAGATTCTAC+GGG | - | Chr5:71650585-71650604 | MsG0580027951.01.T01:CDS | 35.0% |
| AAAGGTGAAGGTGGTGATAA+TGG | - | Chr5:71651386-71651405 | MsG0580027951.01.T01:CDS | 40.0% | |
| CCGTAGAATCTTCTTAAAGG+AGG | + | Chr5:71650587-71650606 | None:intergenic | 40.0% | |
| CTCATTCTTCCTCAACAACA+AGG | + | Chr5:71651540-71651559 | None:intergenic | 40.0% | |
| GAAGAAGGAAGCTGATGAAA+TGG | - | Chr5:71651061-71651080 | MsG0580027951.01.T01:CDS | 40.0% | |
| GAAGGCTGTTATAGAGAATC+GGG | - | Chr5:71651448-71651467 | MsG0580027951.01.T01:CDS | 40.0% | |
| GGATTGCTTGTGTTAGATCA+TGG | + | Chr5:71651283-71651302 | None:intergenic | 40.0% | |
| GTTAGATCATGGTTCAGACT+CGG | + | Chr5:71651272-71651291 | None:intergenic | 40.0% | |
| TCCATAGAATTAACCGAACC+AGG | + | Chr5:71651134-71651153 | None:intergenic | 40.0% | |
| TCTAACACAAGCAATCCGTT+CGG | - | Chr5:71651286-71651305 | MsG0580027951.01.T01:intron | 40.0% | |
| TCTTCCTCAACAACAAGGAA+CGG | + | Chr5:71651535-71651554 | None:intergenic | 40.0% | |
| TGAATGACCTTTGTGGTGTT+AGG | + | Chr5:71650770-71650789 | None:intergenic | 40.0% | |
| TGCAAAAATACTAGTCCCTC+AGG | - | Chr5:71650821-71650840 | MsG0580027951.01.T01:CDS | 40.0% | |
| TTATCACCACCTTCACCTTT+AGG | + | Chr5:71651386-71651405 | None:intergenic | 40.0% | |
| ! | AAGAAGCATGCAAGAGTCAT+AGG | - | Chr5:71650681-71650700 | MsG0580027951.01.T01:CDS | 40.0% |
| ! | AGAAGCATGCAAGAGTCATA+GGG | - | Chr5:71650682-71650701 | MsG0580027951.01.T01:CDS | 40.0% |
| ! | TATAGAGAATCGGGCTTTTG+TGG | - | Chr5:71651457-71651476 | MsG0580027951.01.T01:CDS | 40.0% |
| !! | ACCTGGTTCGGTTAATTCTA+TGG | - | Chr5:71651130-71651149 | MsG0580027951.01.T01:intron | 40.0% |
| !! | CTTGTTGTTGAGGAAGAATG+AGG | - | Chr5:71651538-71651557 | MsG0580027951.01.T01:CDS | 40.0% |
| !! | TGATAATGGAAGAGAGGAGA+AGG | - | Chr5:71651400-71651419 | MsG0580027951.01.T01:CDS | 40.0% |
| !! | TGGTTCGGTTAATTCTATGG+AGG | - | Chr5:71651133-71651152 | MsG0580027951.01.T01:intron | 40.0% |
| AAGTGGTGCAACACGTGAAA+CGG | - | Chr5:71651036-71651055 | MsG0580027951.01.T01:CDS | 45.0% | |
| ACACGTGAAACGGTTGAAGA+AGG | - | Chr5:71651046-71651065 | MsG0580027951.01.T01:CDS | 45.0% | |
| AGAGTCATAGGGAAGCTGAA+AGG | - | Chr5:71650693-71650712 | MsG0580027951.01.T01:CDS | 45.0% | |
| ATGGCGAATCGTCACAATGA+TGG | - | Chr5:71651080-71651099 | MsG0580027951.01.T01:CDS | 45.0% | |
| GAAAGTGACAGTGTGTTGTG+AGG | - | Chr5:71651241-71651260 | MsG0580027951.01.T01:intron | 45.0% | |
| TAATGGAAGAGAGGAGAAGG+AGG | - | Chr5:71651403-71651422 | MsG0580027951.01.T01:CDS | 45.0% | |
| TCGTCTGATTCTCCTGGAAA+CGG | + | Chr5:71651173-71651192 | None:intergenic | 45.0% | |
| TCTCCTTCCTAACACCACAA+AGG | - | Chr5:71650760-71650779 | MsG0580027951.01.T01:CDS | 45.0% | |
| ! | AATCGGGCTTTTGTGGATTC+TGG | - | Chr5:71651464-71651483 | MsG0580027951.01.T01:CDS | 45.0% |
| ! | ATCGGGCTTTTGTGGATTCT+GGG | - | Chr5:71651465-71651484 | MsG0580027951.01.T01:CDS | 45.0% |
| ! | TGACCTTTGTGGTGTTAGGA+AGG | + | Chr5:71650766-71650785 | None:intergenic | 45.0% |
| !! | AGCTTTGGAAAGGGGTTTGA+AGG | - | Chr5:71651430-71651449 | MsG0580027951.01.T01:CDS | 45.0% |
| !! | AGGAGGTAGAAGCTTTGGAA+AGG | - | Chr5:71651420-71651439 | MsG0580027951.01.T01:CDS | 45.0% |
| !! | AGGTAGGACAAAGAGTGTTG+TGG | - | Chr5:71651349-71651368 | MsG0580027951.01.T01:intron | 45.0% |
| !! | AGGTGGTGATAATGGAAGAG+AGG | - | Chr5:71651394-71651413 | MsG0580027951.01.T01:CDS | 45.0% |
| !! | GAGGTAGAAGCTTTGGAAAG+GGG | - | Chr5:71651422-71651441 | MsG0580027951.01.T01:CDS | 45.0% |
| !! | GGAGGTAGAAGCTTTGGAAA+GGG | - | Chr5:71651421-71651440 | MsG0580027951.01.T01:CDS | 45.0% |
| !! | TAGGACAAAGAGTGTTGTGG+TGG | - | Chr5:71651352-71651371 | MsG0580027951.01.T01:intron | 45.0% |
| !! | TTGACCGTTCCTTGTTGTTG+AGG | - | Chr5:71651528-71651547 | MsG0580027951.01.T01:CDS | 45.0% |
| !! | TTTAGTGGTGGCTCTGAACA+CGG | - | Chr5:71650950-71650969 | MsG0580027951.01.T01:CDS | 45.0% |
| !!! | GCTTTTGTGGATTCTGGGAT+GGG | - | Chr5:71651470-71651489 | MsG0580027951.01.T01:CDS | 45.0% |
| ACAAGCAATCCGTTCGGTTC+TGG | - | Chr5:71651292-71651311 | MsG0580027951.01.T01:intron | 50.0% | |
| AGTGAGTTATTGCGGCAGAG+AGG | - | Chr5:71651199-71651218 | MsG0580027951.01.T01:intron | 50.0% | |
| AGTTATTGCGGCAGAGAGGA+AGG | - | Chr5:71651203-71651222 | MsG0580027951.01.T01:intron | 50.0% | |
| CGCTAACAACGACGCCTTAT+CGG | + | Chr5:71651015-71651034 | None:intergenic | 50.0% | |
| CGTTTCCGGCCCAACAAAAT+CGG | + | Chr5:71651497-71651516 | None:intergenic | 50.0% | |
| CTATGGAGGTAGCTGAGACA+TGG | - | Chr5:71651147-71651166 | MsG0580027951.01.T01:intron | 50.0% | |
| GAGGCGACAGTGAGTTATTG+CGG | - | Chr5:71651191-71651210 | MsG0580027951.01.T01:intron | 50.0% | |
| GAGTCTTCCTCTTCATGCAG+CGG | - | Chr5:71651104-71651123 | MsG0580027951.01.T01:CDS | 50.0% | |
| GATTCTACGGGTTTGAGAGC+TGG | - | Chr5:71650597-71650616 | MsG0580027951.01.T01:CDS | 50.0% | |
| GGAGAAGGAGGTAGAAGCTT+TGG | - | Chr5:71651415-71651434 | MsG0580027951.01.T01:CDS | 50.0% | |
| GTTTCCAGGAGAATCAGACG+AGG | - | Chr5:71651172-71651191 | MsG0580027951.01.T01:intron | 50.0% | |
| GTTTCCGGCCCAACAAAATC+GGG | + | Chr5:71651496-71651515 | None:intergenic | 50.0% | |
| ! | CGATTTTGTTGGGCCGGAAA+CGG | - | Chr5:71651495-71651514 | MsG0580027951.01.T01:CDS | 50.0% |
| ! | GATTTTGTTGGGCCGGAAAC+GGG | - | Chr5:71651496-71651515 | MsG0580027951.01.T01:CDS | 50.0% |
| !! | ACTGTCACTTTCATCCTCCG+TGG | + | Chr5:71651233-71651252 | None:intergenic | 50.0% |
| !! | AGATGATGACGGTTGGAGGT+AGG | - | Chr5:71651333-71651352 | MsG0580027951.01.T01:intron | 50.0% |
| !! | CGATAAGGCGTCGTTGTTAG+CGG | - | Chr5:71651013-71651032 | MsG0580027951.01.T01:CDS | 50.0% |
| !! | GACAAAGAGTGTTGTGGTGG+TGG | - | Chr5:71651355-71651374 | MsG0580027951.01.T01:intron | 50.0% |
| !! | GGCTTTTGTGGATTCTGGGA+TGG | - | Chr5:71651469-71651488 | MsG0580027951.01.T01:CDS | 50.0% |
| AGGTTCTCCGCTGCATGAAG+AGG | + | Chr5:71651114-71651133 | None:intergenic | 55.0% | |
| ATGCAGCGGAGAACCTGGTT+CGG | - | Chr5:71651118-71651137 | MsG0580027951.01.T01:CDS | 55.0% | |
| CTACGGGTTTGAGAGCTGGA+TGG | - | Chr5:71650601-71650620 | MsG0580027951.01.T01:CDS | 55.0% | |
| GAGTGGCCTAAAGGTGAAGG+TGG | - | Chr5:71651377-71651396 | MsG0580027951.01.T01:CDS | 55.0% | |
| GCAGAGAGGAAGGAGAACCA+CGG | - | Chr5:71651213-71651232 | MsG0580027951.01.T01:intron | 55.0% | |
| GGTTCGAGCGGAGATGATGA+CGG | - | Chr5:71651322-71651341 | MsG0580027951.01.T01:intron | 55.0% | |
| GTCATCATCTCCGCTCGAAC+CGG | + | Chr5:71651323-71651342 | None:intergenic | 55.0% | |
| GTGGAGTGGCCTAAAGGTGA+AGG | - | Chr5:71651374-71651393 | MsG0580027951.01.T01:CDS | 55.0% | |
| TCTTCATGCAGCGGAGAACC+TGG | - | Chr5:71651113-71651132 | MsG0580027951.01.T01:CDS | 55.0% | |
| ! | GGGATGGGCCCGATTTTGTT+GGG | - | Chr5:71651485-71651504 | MsG0580027951.01.T01:CDS | 55.0% |
| ! | TGGGATGGGCCCGATTTTGT+TGG | - | Chr5:71651484-71651503 | MsG0580027951.01.T01:CDS | 55.0% |
| !! | AGAGTGTTGTGGTGGTGGAG+TGG | - | Chr5:71651360-71651379 | MsG0580027951.01.T01:intron | 55.0% |
| CAACCTCACGAGCCCGTTTC+CGG | + | Chr5:71651511-71651530 | None:intergenic | 60.0% | |
| CCGGTTTCGCCAGAACCGAA+CGG | + | Chr5:71651304-71651323 | None:intergenic | 60.0% | |
| GAGAGGAAGGAGAACCACGG+AGG | - | Chr5:71651216-71651235 | MsG0580027951.01.T01:intron | 60.0% | |
| GCTGAGACATGGCCGTTTCC+AGG | - | Chr5:71651158-71651177 | MsG0580027951.01.T01:intron | 60.0% | |
| GGCGTCGTTGTTAGCGGAAG+TGG | - | Chr5:71651019-71651038 | MsG0580027951.01.T01:CDS | 60.0% | |
| GTCGCCTCGTCTGATTCTCC+TGG | + | Chr5:71651179-71651198 | None:intergenic | 60.0% | |
| ! | CCGTTCGGTTCTGGCGAAAC+CGG | - | Chr5:71651301-71651320 | MsG0580027951.01.T01:intron | 60.0% |
| ! | TGGGCCCGATTTTGTTGGGC+CGG | - | Chr5:71651489-71651508 | MsG0580027951.01.T01:CDS | 60.0% |
| !! | CGAGCGGAGATGATGACGGT+TGG | - | Chr5:71651326-71651345 | MsG0580027951.01.T01:intron | 60.0% |
| !! | GCGGAGATGATGACGGTTGG+AGG | - | Chr5:71651329-71651348 | MsG0580027951.01.T01:intron | 60.0% |
| !! | GTGGTGGTGGAGTGGCCTAA+AGG | - | Chr5:71651368-71651387 | MsG0580027951.01.T01:CDS | 60.0% |
| !! | TCTGGCGAAACCGGTTCGAG+CGG | - | Chr5:71651310-71651329 | MsG0580027951.01.T01:intron | 60.0% |
| ! | GGGCCGGAAACGGGCTCGTG+AGG | - | Chr5:71651505-71651524 | MsG0580027951.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 71650578 | 71651571 | 71650578 | ID=MsG0580027951.01;Name=MsG0580027951.01 |
| Chr5 | mRNA | 71650578 | 71651571 | 71650578 | ID=MsG0580027951.01.T01;Parent=MsG0580027951.01;Name=MsG0580027951.01.T01;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|254 |
| Chr5 | exon | 71651368 | 71651571 | 71651368 | ID=MsG0580027951.01.T01:exon:5017;Parent=MsG0580027951.01.T01 |
| Chr5 | exon | 71650578 | 71651138 | 71650578 | ID=MsG0580027951.01.T01:exon:5016;Parent=MsG0580027951.01.T01 |
| Chr5 | CDS | 71651368 | 71651571 | 71651368 | ID=MsG0580027951.01.T01:cds;Parent=MsG0580027951.01.T01 |
| Chr5 | CDS | 71650578 | 71651138 | 71650578 | ID=MsG0580027951.01.T01:cds;Parent=MsG0580027951.01.T01 |
| Gene Sequence |
| Protein sequence |
