Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028775.01.T01 | XP_003616115.1 | 100 | 75 | 0 | 0 | 9 | 83 | 312 | 386 | 3.35E-44 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028775.01.T01 | Q9FGV1 | 93.243 | 74 | 5 | 0 | 9 | 82 | 310 | 383 | 1.25E-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028775.01.T01 | G7KFN6 | 100.000 | 75 | 0 | 0 | 9 | 83 | 312 | 386 | 1.60e-44 | 162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048298.01 | MsG0580028775.01 | 0.802382 | 5.760733e-49 | 2.818041e-46 |
| MsG0480020699.01 | MsG0580028775.01 | 0.800080 | 1.704147e-48 | 7.863327e-46 |
| MsG0480022796.01 | MsG0580028775.01 | 0.800509 | 1.393828e-48 | 6.501735e-46 |
| MsG0480023202.01 | MsG0580028775.01 | 0.800170 | 1.633779e-48 | 7.555620e-46 |
| MsG0580024462.01 | MsG0580028775.01 | 0.811229 | 7.770708e-51 | 4.783735e-48 |
| MsG0580028775.01 | MsG0580028776.01 | 0.815845 | 7.504654e-52 | 5.231769e-49 |
| MsG0580028775.01 | MsG0680034853.01 | 0.817118 | 3.891297e-52 | 2.809085e-49 |
| MsG0580028775.01 | MsG0880042380.01 | 0.810807 | 9.590399e-51 | 5.838269e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028775.01.T01 | MTR_5g076270 | 100.000 | 75 | 0 | 0 | 9 | 83 | 312 | 386 | 4.05e-48 | 162 |
| MsG0580028775.01.T01 | MTR_3g064050 | 93.333 | 75 | 5 | 0 | 9 | 83 | 77 | 151 | 3.49e-45 | 153 |
| MsG0580028775.01.T01 | MTR_3g064050 | 93.333 | 75 | 5 | 0 | 9 | 83 | 314 | 388 | 1.86e-44 | 152 |
| MsG0580028775.01.T01 | MTR_8g079492 | 89.474 | 76 | 8 | 0 | 9 | 84 | 228 | 303 | 2.29e-41 | 143 |
| MsG0580028775.01.T01 | MTR_8g079492 | 89.474 | 76 | 8 | 0 | 9 | 84 | 310 | 385 | 2.62e-41 | 143 |
| MsG0580028775.01.T01 | MTR_8g079492 | 90.541 | 74 | 7 | 0 | 9 | 82 | 310 | 383 | 7.79e-41 | 142 |
| MsG0580028775.01.T01 | MTR_2g018690 | 88.158 | 76 | 9 | 0 | 9 | 84 | 311 | 386 | 1.60e-40 | 141 |
| MsG0580028775.01.T01 | MTR_4g124900 | 63.014 | 73 | 21 | 3 | 9 | 78 | 309 | 378 | 2.62e-23 | 92.4 |
| MsG0580028775.01.T01 | MTR_4g124900 | 63.014 | 73 | 21 | 3 | 9 | 78 | 309 | 378 | 2.67e-23 | 92.4 |
| MsG0580028775.01.T01 | MTR_2g043250 | 72.727 | 55 | 14 | 1 | 9 | 63 | 309 | 362 | 3.83e-22 | 89.0 |
| MsG0580028775.01.T01 | MTR_8g101360 | 66.667 | 51 | 17 | 0 | 9 | 59 | 319 | 369 | 9.89e-21 | 85.1 |
| MsG0580028775.01.T01 | MTR_1g024025 | 52.857 | 70 | 32 | 1 | 9 | 78 | 330 | 398 | 5.12e-19 | 80.1 |
| MsG0580028775.01.T01 | MTR_2g014770 | 46.154 | 65 | 35 | 0 | 9 | 73 | 341 | 405 | 1.55e-12 | 61.6 |
| MsG0580028775.01.T01 | MTR_2g014770 | 46.154 | 65 | 35 | 0 | 9 | 73 | 341 | 405 | 1.69e-12 | 61.6 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 355 | 416 | 3.91e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 368 | 429 | 3.91e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 355 | 416 | 4.04e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 368 | 429 | 4.05e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 355 | 416 | 4.10e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 368 | 429 | 4.18e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 238 | 299 | 4.35e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 238 | 299 | 4.41e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 225 | 286 | 4.45e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_2g093740 | 45.161 | 62 | 34 | 0 | 12 | 73 | 225 | 286 | 4.52e-12 | 60.5 |
| MsG0580028775.01.T01 | MTR_8g100050 | 47.826 | 69 | 33 | 1 | 9 | 77 | 345 | 410 | 1.58e-11 | 58.9 |
| MsG0580028775.01.T01 | MTR_8g100050 | 47.826 | 69 | 33 | 1 | 9 | 77 | 345 | 410 | 2.01e-11 | 58.5 |
| MsG0580028775.01.T01 | MTR_4g088210 | 47.692 | 65 | 33 | 1 | 9 | 73 | 331 | 394 | 3.62e-11 | 57.8 |
| MsG0580028775.01.T01 | MTR_4g088210 | 47.692 | 65 | 33 | 1 | 9 | 73 | 331 | 394 | 3.62e-11 | 57.8 |
| MsG0580028775.01.T01 | MTR_4g021580 | 45.588 | 68 | 34 | 2 | 9 | 74 | 304 | 370 | 9.29e-11 | 56.6 |
| MsG0580028775.01.T01 | MTR_4g021580 | 45.588 | 68 | 34 | 2 | 9 | 74 | 304 | 370 | 9.34e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028775.01.T01 | AT5G37020 | 93.243 | 74 | 5 | 0 | 9 | 82 | 310 | 383 | 9.58e-44 | 150 |
| MsG0580028775.01.T01 | AT5G37020 | 93.243 | 74 | 5 | 0 | 9 | 82 | 215 | 288 | 9.85e-44 | 150 |
| MsG0580028775.01.T01 | AT5G37020 | 93.243 | 74 | 5 | 0 | 9 | 82 | 310 | 383 | 1.28e-43 | 150 |
| MsG0580028775.01.T01 | AT1G30330 | 86.842 | 76 | 10 | 0 | 9 | 84 | 313 | 388 | 4.75e-40 | 140 |
| MsG0580028775.01.T01 | AT1G30330 | 86.842 | 76 | 10 | 0 | 9 | 84 | 313 | 388 | 4.75e-40 | 140 |
| MsG0580028775.01.T01 | AT1G30330 | 86.842 | 76 | 10 | 0 | 9 | 84 | 311 | 386 | 4.99e-40 | 140 |
| MsG0580028775.01.T01 | AT1G19220 | 61.644 | 73 | 22 | 3 | 9 | 78 | 309 | 378 | 1.27e-21 | 87.4 |
| MsG0580028775.01.T01 | AT5G20730 | 65.455 | 55 | 18 | 1 | 9 | 63 | 310 | 363 | 1.82e-20 | 84.3 |
| MsG0580028775.01.T01 | AT5G20730 | 65.455 | 55 | 18 | 1 | 9 | 63 | 311 | 364 | 1.86e-20 | 84.3 |
| MsG0580028775.01.T01 | AT5G20730 | 65.455 | 55 | 18 | 1 | 9 | 63 | 311 | 364 | 1.95e-20 | 84.3 |
| MsG0580028775.01.T01 | AT1G19850 | 50.725 | 69 | 33 | 1 | 9 | 77 | 331 | 398 | 4.84e-16 | 71.6 |
| MsG0580028775.01.T01 | AT1G19850 | 50.725 | 69 | 33 | 1 | 9 | 77 | 342 | 409 | 4.94e-16 | 71.6 |
| MsG0580028775.01.T01 | AT5G60450 | 47.761 | 67 | 35 | 0 | 9 | 75 | 335 | 401 | 2.51e-14 | 66.6 |
| MsG0580028775.01.T01 | AT5G60450 | 47.761 | 67 | 35 | 0 | 9 | 75 | 359 | 425 | 2.80e-14 | 66.6 |
| MsG0580028775.01.T01 | AT5G62000 | 46.377 | 69 | 34 | 1 | 9 | 77 | 347 | 412 | 2.09e-12 | 61.2 |
| MsG0580028775.01.T01 | AT5G62000 | 46.377 | 69 | 34 | 1 | 9 | 77 | 347 | 412 | 2.09e-12 | 61.2 |
| MsG0580028775.01.T01 | AT5G62000 | 46.377 | 69 | 34 | 1 | 9 | 77 | 347 | 412 | 2.09e-12 | 61.2 |
| MsG0580028775.01.T01 | AT5G62000 | 46.377 | 69 | 34 | 1 | 9 | 77 | 347 | 412 | 2.09e-12 | 61.2 |
| MsG0580028775.01.T01 | AT5G62000 | 46.377 | 69 | 34 | 1 | 9 | 77 | 347 | 412 | 2.40e-12 | 61.2 |
| MsG0580028775.01.T01 | AT2G33860 | 46.774 | 62 | 33 | 0 | 12 | 73 | 188 | 249 | 2.28e-11 | 58.5 |
| MsG0580028775.01.T01 | AT2G33860 | 57.778 | 45 | 19 | 0 | 12 | 56 | 345 | 389 | 2.47e-11 | 58.2 |
Find 33 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGACCTCCAATGAGAATT+TGG | 0.247430 | 5:+86109634 | None:intergenic |
| GCCATGGTCGTTTCAATCTA+AGG | 0.278500 | 5:+86108985 | None:intergenic |
| TACATTGGAAATGTAGTTAA+AGG | 0.316141 | 5:+86109023 | None:intergenic |
| GACAGCCACGGGTATCGTTA+TGG | 0.368607 | 5:-86109055 | MsG0580028775.01.T01:CDS |
| TCCATTGTGCATAGGTTGGT+TGG | 0.395710 | 5:-86109100 | MsG0580028775.01.T01:intron |
| TTCTCATTGGAGGTCTGTTA+AGG | 0.408471 | 5:-86109629 | MsG0580028775.01.T01:intron |
| TGAGAATTTGGCCACCGAAC+AGG | 0.420532 | 5:+86109646 | None:intergenic |
| ACCTTGTTTGTGCAGGTACA+TGG | 0.430262 | 5:-86109698 | MsG0580028775.01.T01:CDS |
| TTCGGTGGCCAAATTCTCAT+TGG | 0.448662 | 5:-86109642 | MsG0580028775.01.T01:CDS |
| CCATTGTGCATAGGTTGGTT+GGG | 0.449329 | 5:-86109099 | MsG0580028775.01.T01:intron |
| ACAGCCACGGGTATCGTTAT+GGG | 0.450191 | 5:-86109054 | MsG0580028775.01.T01:CDS |
| GGTTGGGATGAATCGACAGC+TGG | 0.467846 | 5:-86109083 | MsG0580028775.01.T01:CDS |
| GGAAATAGTGATGGATACAT+TGG | 0.468477 | 5:+86109008 | None:intergenic |
| CCATGGTCGTTTCAATCTAA+GGG | 0.508697 | 5:+86108986 | None:intergenic |
| GGTGGCCAAATTCTCATTGG+AGG | 0.509028 | 5:-86109639 | MsG0580028775.01.T01:CDS |
| TTGAAACGACCATGGCATCC+TGG | 0.526294 | 5:-86108978 | MsG0580028775.01.T01:CDS |
| CCAAGAAAAGAAGAAGTGCC+AGG | 0.532299 | 5:+86108960 | None:intergenic |
| CCTTGTTTGTGCAGGTACAT+GGG | 0.538001 | 5:-86109697 | MsG0580028775.01.T01:CDS |
| ATGTGCCACCTTGTTTGTGC+AGG | 0.550647 | 5:-86109705 | MsG0580028775.01.T01:CDS |
| TAAGTGACATGGATCCTGTT+CGG | 0.554501 | 5:-86109660 | MsG0580028775.01.T01:CDS |
| AATCTAAGGGGAAATAGTGA+TGG | 0.562581 | 5:+86108999 | None:intergenic |
| CCCATGTACCTGCACAAACA+AGG | 0.564028 | 5:+86109697 | None:intergenic |
| GTTGGGATGAATCGACAGCT+GGG | 0.567928 | 5:-86109082 | MsG0580028775.01.T01:CDS |
| GAAGAAGTGCCAGGATGCCA+TGG | 0.571373 | 5:+86108969 | None:intergenic |
| CCCTTAGATTGAAACGACCA+TGG | 0.577662 | 5:-86108986 | MsG0580028775.01.T01:CDS |
| AGCTGGGGAGAGACAGCCAC+GGG | 0.580172 | 5:-86109066 | MsG0580028775.01.T01:CDS |
| CATGGTCGTTTCAATCTAAG+GGG | 0.661723 | 5:+86108987 | None:intergenic |
| TATAACTAGCATAAGTGACA+TGG | 0.663626 | 5:-86109671 | MsG0580028775.01.T01:CDS |
| ATTTCCCATAACGATACCCG+TGG | 0.672203 | 5:+86109050 | None:intergenic |
| CAGCTGGGGAGAGACAGCCA+CGG | 0.687247 | 5:-86109067 | MsG0580028775.01.T01:CDS |
| GTGACATGGATCCTGTTCGG+TGG | 0.692792 | 5:-86109657 | MsG0580028775.01.T01:CDS |
| TTGGGATGAATCGACAGCTG+GGG | 0.697786 | 5:-86109081 | MsG0580028775.01.T01:CDS |
| ATGTACCTGCACAAACAAGG+TGG | 0.738221 | 5:+86109700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCATTAAAAGTTTTGAA+AGG | - | Chr5:86109510-86109529 | MsG0580028775.01.T01:intron | 15.0% |
| !! | AAATATCTACTTAATCGAAA+AGG | + | Chr5:86109349-86109368 | None:intergenic | 20.0% |
| !! | CACAATGTAATACATAAAAT+TGG | - | Chr5:86109063-86109082 | MsG0580028775.01.T01:CDS | 20.0% |
| !! | TTGTATTCCATATATTAGAA+AGG | - | Chr5:86109478-86109497 | MsG0580028775.01.T01:intron | 20.0% |
| !!! | AGATTTCAAGTGTTTTTTAA+AGG | + | Chr5:86109217-86109236 | None:intergenic | 20.0% |
| !!! | TATTTTCTTTTTACATAACC+TGG | - | Chr5:86109364-86109383 | MsG0580028775.01.T01:intron | 20.0% |
| ! | AAGGTTTATTAATCAAAGAC+AGG | + | Chr5:86109198-86109217 | None:intergenic | 25.0% |
| ! | ACTAAGACCTTTCTAATATA+TGG | + | Chr5:86109488-86109507 | None:intergenic | 25.0% |
| ! | CAAAGTAAACTTTATGAAAC+AGG | + | Chr5:86109245-86109264 | None:intergenic | 25.0% |
| ! | GAATCATGTTCAAATTCAAT+AGG | - | Chr5:86109400-86109419 | MsG0580028775.01.T01:intron | 25.0% |
| ! | TACATTGGAAATGTAGTTAA+AGG | + | Chr5:86109636-86109655 | None:intergenic | 25.0% |
| AAGGGAGAATGTTAATACAA+CGG | - | Chr5:86109127-86109146 | MsG0580028775.01.T01:intron | 30.0% | |
| ATGGATGAAACAAGATAATC+AGG | + | Chr5:86109541-86109560 | None:intergenic | 30.0% | |
| TATAACTAGCATAAGTGACA+TGG | - | Chr5:86108985-86109004 | MsG0580028775.01.T01:CDS | 30.0% | |
| ! | TTGAGTTCTAATCATGAAGA+GGG | - | Chr5:86109171-86109190 | MsG0580028775.01.T01:intron | 30.0% |
| ! | TTTGAGTTCTAATCATGAAG+AGG | - | Chr5:86109170-86109189 | MsG0580028775.01.T01:intron | 30.0% |
| !! | CTTCTTGACTAGGTTTTAAT+CGG | - | Chr5:86109436-86109455 | MsG0580028775.01.T01:intron | 30.0% |
| AATCTAAGGGGAAATAGTGA+TGG | + | Chr5:86109660-86109679 | None:intergenic | 35.0% | |
| CCAAAAAACCTCATGGTTTA+AGG | + | Chr5:86109281-86109300 | None:intergenic | 35.0% | |
| CCTTCGAAACATAAGACTAA+GGG | - | Chr5:86109109-86109128 | MsG0580028775.01.T01:intron | 35.0% | |
| CGATTAAAACCTAGTCAAGA+AGG | + | Chr5:86109438-86109457 | None:intergenic | 35.0% | |
| CTCATGGTTTAAGGATGAAA+AGG | + | Chr5:86109272-86109291 | None:intergenic | 35.0% | |
| TCCTTCGAAACATAAGACTA+AGG | - | Chr5:86109108-86109127 | MsG0580028775.01.T01:intron | 35.0% | |
| TTGTTTCATCCATTGTGCAT+AGG | - | Chr5:86109548-86109567 | MsG0580028775.01.T01:intron | 35.0% | |
| ! | CTTTTCATCCTTAAACCATG+AGG | - | Chr5:86109270-86109289 | MsG0580028775.01.T01:intron | 35.0% |
| ! | TGAGTTCTAATCATGAAGAG+GGG | - | Chr5:86109172-86109191 | MsG0580028775.01.T01:intron | 35.0% |
| ! | TTTAGTTCACCTTCTTGACT+AGG | - | Chr5:86109426-86109445 | MsG0580028775.01.T01:intron | 35.0% |
| !! | ACTAGGTTTTAATCGGTTCA+AGG | - | Chr5:86109443-86109462 | MsG0580028775.01.T01:intron | 35.0% |
| !! | GGAAATAGTGATGGATACAT+TGG | + | Chr5:86109651-86109670 | None:intergenic | 35.0% |
| !!! | AACGGTAACTTTGCTGTTTT+GGG | - | Chr5:86109145-86109164 | MsG0580028775.01.T01:intron | 35.0% |
| !!! | CCTTAAACCATGAGGTTTTT+TGG | - | Chr5:86109278-86109297 | MsG0580028775.01.T01:intron | 35.0% |
| ACAGACCTCCAATGAGAATT+TGG | + | Chr5:86109025-86109044 | None:intergenic | 40.0% | |
| CATGGTCGTTTCAATCTAAG+GGG | + | Chr5:86109672-86109691 | None:intergenic | 40.0% | |
| CCATGGTCGTTTCAATCTAA+GGG | + | Chr5:86109673-86109692 | None:intergenic | 40.0% | |
| GACTACTCCAAAAAACCTCA+TGG | + | Chr5:86109288-86109307 | None:intergenic | 40.0% | |
| TAAGTGACATGGATCCTGTT+CGG | - | Chr5:86108996-86109015 | MsG0580028775.01.T01:CDS | 40.0% | |
| TTCATCCATTGTGCATAGGT+TGG | - | Chr5:86109552-86109571 | MsG0580028775.01.T01:intron | 40.0% | |
| TTCTCATTGGAGGTCTGTTA+AGG | - | Chr5:86109027-86109046 | MsG0580028775.01.T01:CDS | 40.0% | |
| !! | CCCTTAGTCTTATGTTTCGA+AGG | + | Chr5:86109112-86109131 | None:intergenic | 40.0% |
| !!! | CAACGGTAACTTTGCTGTTT+TGG | - | Chr5:86109144-86109163 | MsG0580028775.01.T01:intron | 40.0% |
| !!! | TGAGGTTTTTTGGAGTAGTC+TGG | - | Chr5:86109288-86109307 | MsG0580028775.01.T01:intron | 40.0% |
| ATGTACCTGCACAAACAAGG+TGG | + | Chr5:86108959-86108978 | None:intergenic | 45.0% | |
| ATTTCCCATAACGATACCCG+TGG | + | Chr5:86109609-86109628 | None:intergenic | 45.0% | |
| CCCTTAGATTGAAACGACCA+TGG | - | Chr5:86109670-86109689 | MsG0580028775.01.T01:CDS | 45.0% | |
| GCCATGGTCGTTTCAATCTA+AGG | + | Chr5:86109674-86109693 | None:intergenic | 45.0% | |
| TTCGGTGGCCAAATTCTCAT+TGG | - | Chr5:86109014-86109033 | MsG0580028775.01.T01:CDS | 45.0% | |
| ! | ACCTTGTTTGTGCAGGTACA+TGG | - | Chr5:86108958-86108977 | MsG0580028775.01.T01:CDS | 45.0% |
| ! | CCTGGCACTTCTTCTTTTCT+TGG | - | Chr5:86109696-86109715 | MsG0580028775.01.T01:CDS | 45.0% |
| ! | CCTTGTTTGTGCAGGTACAT+GGG | - | Chr5:86108959-86108978 | MsG0580028775.01.T01:CDS | 45.0% |
| ! | GATTCGTGTTGCTGTATTCC+AGG | + | Chr5:86109385-86109404 | None:intergenic | 45.0% |
| !! | CCAAGAAAAGAAGAAGTGCC+AGG | + | Chr5:86109699-86109718 | None:intergenic | 45.0% |
| !! | CCATTGTGCATAGGTTGGTT+GGG | - | Chr5:86109557-86109576 | MsG0580028775.01.T01:intron | 45.0% |
| !! | TCCATTGTGCATAGGTTGGT+TGG | - | Chr5:86109556-86109575 | MsG0580028775.01.T01:intron | 45.0% |
| CCCAACCAACCTATGCACAA+TGG | + | Chr5:86109560-86109579 | None:intergenic | 50.0% | |
| CCCATGTACCTGCACAAACA+AGG | + | Chr5:86108962-86108981 | None:intergenic | 50.0% | |
| GGTGGCCAAATTCTCATTGG+AGG | - | Chr5:86109017-86109036 | MsG0580028775.01.T01:CDS | 50.0% | |
| GTTGGGATGAATCGACAGCT+GGG | - | Chr5:86109574-86109593 | MsG0580028775.01.T01:intron | 50.0% | |
| TGAGAATTTGGCCACCGAAC+AGG | + | Chr5:86109013-86109032 | None:intergenic | 50.0% | |
| TTGAAACGACCATGGCATCC+TGG | - | Chr5:86109678-86109697 | MsG0580028775.01.T01:CDS | 50.0% | |
| TTGGGATGAATCGACAGCTG+GGG | - | Chr5:86109575-86109594 | MsG0580028775.01.T01:intron | 50.0% | |
| ! | ACAGCCACGGGTATCGTTAT+GGG | - | Chr5:86109602-86109621 | MsG0580028775.01.T01:intron | 50.0% |
| ! | ATGTGCCACCTTGTTTGTGC+AGG | - | Chr5:86108951-86108970 | MsG0580028775.01.T01:CDS | 50.0% |
| GGTTGGGATGAATCGACAGC+TGG | - | Chr5:86109573-86109592 | MsG0580028775.01.T01:intron | 55.0% | |
| GTGACATGGATCCTGTTCGG+TGG | - | Chr5:86108999-86109018 | MsG0580028775.01.T01:CDS | 55.0% | |
| ! | GACAGCCACGGGTATCGTTA+TGG | - | Chr5:86109601-86109620 | MsG0580028775.01.T01:intron | 55.0% |
| !! | GAAGAAGTGCCAGGATGCCA+TGG | + | Chr5:86109690-86109709 | None:intergenic | 55.0% |
| AGCTGGGGAGAGACAGCCAC+GGG | - | Chr5:86109590-86109609 | MsG0580028775.01.T01:intron | 65.0% | |
| CAGCTGGGGAGAGACAGCCA+CGG | - | Chr5:86109589-86109608 | MsG0580028775.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 86108947 | 86109731 | 86108947 | ID=MsG0580028775.01;Name=MsG0580028775.01 |
| Chr5 | mRNA | 86108947 | 86109731 | 86108947 | ID=MsG0580028775.01.T01;Parent=MsG0580028775.01;Name=MsG0580028775.01.T01;_AED=0.49;_eAED=0.56;_QI=0|1|0|1|1|1|2|0|87 |
| Chr5 | exon | 86109630 | 86109731 | 86109630 | ID=MsG0580028775.01.T01:exon:21678;Parent=MsG0580028775.01.T01 |
| Chr5 | exon | 86108947 | 86109108 | 86108947 | ID=MsG0580028775.01.T01:exon:21677;Parent=MsG0580028775.01.T01 |
| Chr5 | CDS | 86109630 | 86109731 | 86109630 | ID=MsG0580028775.01.T01:cds;Parent=MsG0580028775.01.T01 |
| Chr5 | CDS | 86108947 | 86109108 | 86108947 | ID=MsG0580028775.01.T01:cds;Parent=MsG0580028775.01.T01 |
| Gene Sequence |
| Protein sequence |
