AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029498.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029498.01.T01 MTR_5g087520 94.474 380 2 1 1 361 46 425 0.0 723
MsG0580029498.01.T01 MTR_5g087520 94.474 380 2 1 1 361 45 424 0.0 723
MsG0580029498.01.T01 MTR_6g040240 97.826 46 1 0 57 102 32 77 4.24e-24 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029498.01.T01 AT5G08420 67.919 346 88 3 24 346 29 374 1.02e-150 430

Find 112 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTGTTGTTGTACTATTT+TGG 0.090965 5:+97772907 MsG0580029498.01.T01:three_prime_UTR
ATAAGGATCCTTAGTCTTTC+TGG 0.095982 5:-97769583 None:intergenic
ATATATTGGATCAAAATTTA+TGG 0.168133 5:-97772764 None:intergenic
TCTTTAGGAACCTGCAAATT+TGG 0.182816 5:+97772378 MsG0580029498.01.T01:intron
AAATGCCGAGACATACATTA+TGG 0.250103 5:+97772639 MsG0580029498.01.T01:CDS
AAATAGTACAACAACAAATT+TGG 0.266566 5:-97772904 None:intergenic
GCAAGAGAGGCAGGCGCAGC+AGG 0.288420 5:+97772197 MsG0580029498.01.T01:CDS
GCACCCTGTCTACAACATTA+AGG 0.310603 5:+97771631 MsG0580029498.01.T01:CDS
GGATCGTCATCCCATGGTTT+TGG 0.314052 5:-97769260 None:intergenic
AAGCCATACTTGTTAAACTT+TGG 0.329364 5:-97771807 None:intergenic
AGCCATACTTGTTAAACTTT+GGG 0.346052 5:-97771806 None:intergenic
GGAAACACGGTTTCTGTAAT+GGG 0.348565 5:+97771548 MsG0580029498.01.T01:CDS
GAGTTACCCACCAAATTTGC+AGG 0.359683 5:-97772388 None:intergenic
CCGCACTTGCCCAAGAGAAC+TGG 0.362064 5:+97771772 MsG0580029498.01.T01:CDS
TTTCACGATATTGAGGAAAC+AGG 0.363173 5:-97769364 None:intergenic
GTTGATATACAATTAGAAAC+TGG 0.364628 5:+97772132 MsG0580029498.01.T01:CDS
TGCGACATCATTAAAATTAG+TGG 0.373891 5:+97770342 MsG0580029498.01.T01:CDS
ACCTTCCAGTGGTCGATGTT+AGG 0.378616 5:-97769281 None:intergenic
CTAGCTTTAACAATAATATA+AGG 0.389933 5:-97769600 None:intergenic
ATGTTACAGACTACATATAT+TGG 0.391390 5:-97772778 None:intergenic
GAAACCTATCCCAGTTCTCT+TGG 0.396471 5:-97771782 None:intergenic
TAGTAATAATGTAGCTGAAA+TGG 0.398714 5:+97772420 MsG0580029498.01.T01:CDS
AGTCTGTAACATGTCACTTC+TGG 0.407906 5:+97772789 MsG0580029498.01.T01:three_prime_UTR
AAAGAAATGGCAAGAGAGGC+AGG 0.413730 5:+97772188 MsG0580029498.01.T01:CDS
TAAACCTTAATGTTGTAGAC+AGG 0.419117 5:-97771635 None:intergenic
AATAGAACCTCTTACCTTCA+AGG 0.421832 5:-97772449 None:intergenic
GGGAAACACGGTTTCTGTAA+TGG 0.425521 5:+97771547 MsG0580029498.01.T01:intron
AAAGGAGTATACGGCTTCTT+CGG 0.425543 5:-97771941 None:intergenic
AAATCCTCCCTCAAAGAATT+CGG 0.425871 5:+97769416 MsG0580029498.01.T01:CDS
AAAAGAAATCGGCAAAGAAA+TGG 0.426057 5:+97772175 MsG0580029498.01.T01:CDS
AAGGTTTGAAGCAAGTTAGA+AGG 0.444794 5:+97771579 MsG0580029498.01.T01:CDS
CTTATATTATTGTTAAAGCT+AGG 0.445498 5:+97769601 MsG0580029498.01.T01:CDS
GTAGTGAAAGGGAAGAAGAA+AGG 0.447906 5:+97769224 MsG0580029498.01.T01:CDS
CAGAGATACCGAATTCTTTG+AGG 0.458386 5:-97769424 None:intergenic
GGAGGAGGGAAAGGAGTATA+CGG 0.461417 5:-97771950 None:intergenic
TAGTGAAAGGGAAGAAGAAA+GGG 0.461716 5:+97769225 MsG0580029498.01.T01:CDS
CTCACCTTGCTAGGCTGTTG+AGG 0.464837 5:-97771971 None:intergenic
AATGCCGAGACATACATTAT+GGG 0.473855 5:+97772640 MsG0580029498.01.T01:CDS
TCGAAGTGTTCCTGCTCCAC+AGG 0.473934 5:+97769644 MsG0580029498.01.T01:CDS
TCAGATTCTTATGATGAAGA+AGG 0.476879 5:+97771734 MsG0580029498.01.T01:intron
TGAAATGGCAATGTCCTTGA+AGG 0.477147 5:+97772435 MsG0580029498.01.T01:CDS
GGCTGTTGAGGAGGAGGGAA+AGG 0.478624 5:-97771959 None:intergenic
CATCATTAAAATTAGTGGGT+TGG 0.479683 5:+97770347 MsG0580029498.01.T01:CDS
TGTGTTCTTCATTCTAGAGA+TGG 0.491175 5:+97772712 MsG0580029498.01.T01:three_prime_UTR
CAGAATCAATGTCACACACT+TGG 0.491644 5:+97772832 MsG0580029498.01.T01:three_prime_UTR
AAACCTATCCCAGTTCTCTT+GGG 0.496632 5:-97771781 None:intergenic
TTATATTATTGTTAAAGCTA+GGG 0.497140 5:+97769602 MsG0580029498.01.T01:CDS
TTTCACAATTAACAGGTTGA+GGG 0.497633 5:+97769540 MsG0580029498.01.T01:intron
AGAGATACCGAATTCTTTGA+GGG 0.500894 5:-97769423 None:intergenic
TTGCTAGGCTGTTGAGGAGG+AGG 0.507990 5:-97771965 None:intergenic
ATAAGAATAACCTGTGGAGC+AGG 0.508854 5:-97769654 None:intergenic
CAGTTCTCTTGGGCAAGTGC+GGG 0.516142 5:-97771771 None:intergenic
CGCACTTGCCCAAGAGAACT+GGG 0.520345 5:+97771773 MsG0580029498.01.T01:CDS
GATGGTGGTCGGCACTCGTA+AGG 0.520722 5:-97767707 None:intergenic
GCGACATCATTAAAATTAGT+GGG 0.520878 5:+97770343 MsG0580029498.01.T01:CDS
TTGAGGAAACAGGGTGGAGA+AGG 0.523955 5:-97769354 None:intergenic
TTGAGAAATTCGATCCATCA+TGG 0.525843 5:+97769303 MsG0580029498.01.T01:CDS
ATTCCACTTTCGTTCCATGA+TGG 0.528435 5:-97769317 None:intergenic
TTCAACAACCAGAAAGACTA+AGG 0.530487 5:+97769575 MsG0580029498.01.T01:CDS
TTAGGAACCTGCAAATTTGG+TGG 0.532283 5:+97772381 MsG0580029498.01.T01:intron
CCAGTTCTCTTGGGCAAGTG+CGG 0.532580 5:-97771772 None:intergenic
TATCTCTGCTGAACTCAACT+TGG 0.535241 5:+97769439 MsG0580029498.01.T01:CDS
CGGCAAAGAAATGGCAAGAG+AGG 0.537360 5:+97772184 MsG0580029498.01.T01:CDS
GATCCATCATGGAACGAAAG+TGG 0.542200 5:+97769314 MsG0580029498.01.T01:CDS
TAGGAACCTGCAAATTTGGT+GGG 0.545284 5:+97772382 MsG0580029498.01.T01:intron
ATCTGTTGTCTCACCTTGCT+AGG 0.550245 5:-97771980 None:intergenic
TCTGTAATGGGTTCATACAA+AGG 0.552902 5:+97771560 MsG0580029498.01.T01:CDS
TATCAAACGAAGTAGTGAAA+GGG 0.554461 5:+97769213 MsG0580029498.01.T01:CDS
AAACAGCGCAAGACCTTGGG+TGG 0.558300 5:-97772267 None:intergenic
AGGTTGTTACATTCTCGTCC+AGG 0.558689 5:+97771428 MsG0580029498.01.T01:CDS
TAGTGGGTTGGTTCGCAACA+AGG 0.562965 5:+97770359 MsG0580029498.01.T01:CDS
CAAGACCTTGGGTGGGACAA+AGG 0.568528 5:-97772259 None:intergenic
AGAATCAATGTCACACACTT+GGG 0.570219 5:+97772833 MsG0580029498.01.T01:three_prime_UTR
GTATCAAACGAAGTAGTGAA+AGG 0.575347 5:+97769212 MsG0580029498.01.T01:CDS
TTGATATACAATTAGAAACT+GGG 0.577978 5:+97772133 MsG0580029498.01.T01:CDS
TGCTAGGCTGTTGAGGAGGA+GGG 0.580239 5:-97771964 None:intergenic
TTGAGGGAGGATTTAACAAG+TGG 0.581563 5:-97769407 None:intergenic
ATGTTAGGATCGTCATCCCA+TGG 0.582412 5:-97769266 None:intergenic
TGTTCGACGGTGATGGTGGT+CGG 0.586778 5:-97767718 None:intergenic
GCAAGTTAGAAGGATTGTTG+AGG 0.587122 5:+97771589 MsG0580029498.01.T01:CDS
TTGCCCAAGAGAACTGGGAT+AGG 0.587564 5:+97771778 MsG0580029498.01.T01:CDS
GCTGAGTTGTTCGACGGTGA+TGG 0.587713 5:-97767725 None:intergenic
TAAGTTACTCAAGAAGACAT+TGG 0.588192 5:-97772861 None:intergenic
TGACCCCATAATGTATGTCT+CGG 0.588273 5:-97772644 None:intergenic
ACCTTGCTAGGCTGTTGAGG+AGG 0.588474 5:-97771968 None:intergenic
CAGGCTCTTGAAATACTCAC+AGG 0.589262 5:+97771408 MsG0580029498.01.T01:intron
TGTAATTTCACAGGGAAACA+CGG 0.589507 5:+97771535 MsG0580029498.01.T01:intron
TCCTCCTCAACAGCCTAGCA+AGG 0.591690 5:+97771967 MsG0580029498.01.T01:CDS
CGAGTCCTTTGTCCCACCCA+AGG 0.600099 5:+97772254 MsG0580029498.01.T01:CDS
AGCAGGTACAGAAACAGCTA+TGG 0.601919 5:+97769178 MsG0580029498.01.T01:intron
CGGTGGTTGCGCAAAATGTG+AGG 0.603169 5:-97767680 None:intergenic
AGCACGATAAACCAAAACCA+TGG 0.604271 5:+97769249 MsG0580029498.01.T01:CDS
TTCACGATATTGAGGAAACA+GGG 0.605886 5:-97769363 None:intergenic
GATACCGAATTCTTTGAGGG+AGG 0.614376 5:-97769420 None:intergenic
AAACCTTAATGTTGTAGACA+GGG 0.617864 5:-97771634 None:intergenic
GTGTGTGACATTGATTCTGA+AGG 0.620145 5:-97772828 None:intergenic
GCACGATAAACCAAAACCAT+GGG 0.622145 5:+97769250 MsG0580029498.01.T01:CDS
TCAGCTCGTTGCTCAACCCA+AGG 0.627447 5:+97767743 MsG0580029498.01.T01:five_prime_UTR
TCCTAACATCGACCACTGGA+AGG 0.628268 5:+97769280 MsG0580029498.01.T01:CDS
ACGATCCTAACATCGACCAC+TGG 0.629773 5:+97769276 MsG0580029498.01.T01:CDS
ATGCCGAGACATACATTATG+GGG 0.632165 5:+97772641 MsG0580029498.01.T01:CDS
CGAATTTCTCAACCTTCCAG+TGG 0.635961 5:-97769292 None:intergenic
TCTGAAGGGAAAATTGTACA+AGG 0.637522 5:-97772813 None:intergenic
GTCGGCACTCGTAAGGAAGA+CGG 0.641805 5:-97767700 None:intergenic
CAACGAGCTGAGTTGTTCGA+CGG 0.668044 5:-97767731 None:intergenic
TGTGTGACATTGATTCTGAA+GGG 0.672152 5:-97772827 None:intergenic
GAGTTGTTCGACGGTGATGG+TGG 0.674472 5:-97767722 None:intergenic
AACAGCGCAAGACCTTGGGT+GGG 0.676636 5:-97772266 None:intergenic
TGATATACAATTAGAAACTG+GGG 0.682323 5:+97772134 MsG0580029498.01.T01:CDS
AAATTTGGTGGGTAACTCTG+AGG 0.713774 5:+97772393 MsG0580029498.01.T01:CDS
ACGATATTGAGGAAACAGGG+TGG 0.755331 5:-97769360 None:intergenic
GGCACTCGTAAGGAAGACGG+TGG 0.758338 5:-97767697 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTTATTATAATT+TGG + Chr5:97771349-97771368 MsG0580029498.01.T01:intron 0.0%
!!! TATTATTTTTATACTACTAT+GGG + Chr5:97768675-97768694 MsG0580029498.01.T01:intron 10.0%
!!! TTATTATTTTTATACTACTA+TGG + Chr5:97768674-97768693 MsG0580029498.01.T01:intron 10.0%
!! AAAAAATTACTCAAATTTCA+AGG - Chr5:97767949-97767968 None:intergenic 15.0%
!! AAATTCTACTCTTATTAATT+TGG - Chr5:97770951-97770970 None:intergenic 15.0%
!! ATATATTGGATCAAAATTTA+TGG - Chr5:97772767-97772786 None:intergenic 15.0%
!! TTATATTATTGTTAAAGCTA+GGG + Chr5:97769602-97769621 MsG0580029498.01.T01:CDS 15.0%
!!! ATTATTTTTATACTACTATG+GGG + Chr5:97768676-97768695 MsG0580029498.01.T01:intron 15.0%
!!! GATTATAACAGTTTTTTTAT+TGG - Chr5:97772997-97773016 None:intergenic 15.0%
!!! TATTTTATAGTATAGATTTC+AGG + Chr5:97771680-97771699 MsG0580029498.01.T01:intron 15.0%
!!! TATTTTTTTTCACAATTAAC+AGG + Chr5:97769533-97769552 MsG0580029498.01.T01:intron 15.0%
!!! TGTAATGTATTTGTTATTTT+TGG + Chr5:97768621-97768640 MsG0580029498.01.T01:intron 15.0%
!! AAATAACAAATACATTACAG+AGG - Chr5:97768620-97768639 None:intergenic 20.0%
!! AAATAGTACAACAACAAATT+TGG - Chr5:97772907-97772926 None:intergenic 20.0%
!! CTTATATTATTGTTAAAGCT+AGG + Chr5:97769601-97769620 MsG0580029498.01.T01:CDS 20.0%
!! TACTTGTGAATTAAATTCTA+AGG + Chr5:97772080-97772099 MsG0580029498.01.T01:intron 20.0%
!! TTATTTCGATAAACATTGTA+GGG + Chr5:97769834-97769853 MsG0580029498.01.T01:intron 20.0%
!! TTGATATACAATTAGAAACT+GGG + Chr5:97772133-97772152 MsG0580029498.01.T01:CDS 20.0%
!!! AAATCCTAATATTGTTTTCA+TGG - Chr5:97770863-97770882 None:intergenic 20.0%
!!! AATTTGTTGTTGTACTATTT+TGG + Chr5:97772907-97772926 MsG0580029498.01.T01:three_prime_UTR 20.0%
!!! ATACGATTAAGTATCATTTT+AGG + Chr5:97769707-97769726 MsG0580029498.01.T01:intron 20.0%
!!! ATTTGTTGTTGTACTATTTT+GGG + Chr5:97772908-97772927 MsG0580029498.01.T01:three_prime_UTR 20.0%
!!! CGTTGTTATTTTATTAATGT+TGG + Chr5:97770252-97770271 MsG0580029498.01.T01:intron 20.0%
!!! CTAGCTTTAACAATAATATA+AGG - Chr5:97769603-97769622 None:intergenic 20.0%
!!! TACGATTAAGTATCATTTTA+GGG + Chr5:97769708-97769727 MsG0580029498.01.T01:intron 20.0%
!!! TCAAACATGTAATTTTTTTC+CGG + Chr5:97769967-97769986 MsG0580029498.01.T01:intron 20.0%
!!! TCTTTTTGTTGCAAAATTTT+GGG - Chr5:97771060-97771079 None:intergenic 20.0%
!!! TGCAAGAATTATAAAACTTT+TGG + Chr5:97768855-97768874 MsG0580029498.01.T01:intron 20.0%
!!! TTATTAATGTTGGTTGATTT+AGG + Chr5:97770262-97770281 MsG0580029498.01.T01:intron 20.0%
!!! TTCTTAGATTTCTTTTTTGA+TGG - Chr5:97772679-97772698 None:intergenic 20.0%
!!! TTCTTTTTGTTGCAAAATTT+TGG - Chr5:97771061-97771080 None:intergenic 20.0%
!!! TTGATGAGAGATTATTTTAT+AGG + Chr5:97770171-97770190 MsG0580029498.01.T01:intron 20.0%
!!! TTTCTATTTTGAAAACTATC+AGG - Chr5:97771169-97771188 None:intergenic 20.0%
! AAAAATATCTTCAAGAAGCT+TGG + Chr5:97769384-97769403 MsG0580029498.01.T01:CDS 25.0%
! AATAAGCTGAAAACAACTTA+TGG - Chr5:97769819-97769838 None:intergenic 25.0%
! ACCAAATAAGAATCTAACAT+AGG - Chr5:97770571-97770590 None:intergenic 25.0%
! ACTACCATGAAAACAATATT+AGG + Chr5:97770856-97770875 MsG0580029498.01.T01:intron 25.0%
! AGAAAATATCTGATAGAAGA+GGG - Chr5:97772057-97772076 None:intergenic 25.0%
! AGGAAACAATTAATATTACC+TGG - Chr5:97771449-97771468 None:intergenic 25.0%
! AGGAAAGATTTGTAAAAAGA+AGG + Chr5:97771242-97771261 MsG0580029498.01.T01:intron 25.0%
! ATGTTACAGACTACATATAT+TGG - Chr5:97772781-97772800 None:intergenic 25.0%
! ATTTACTTGCACAAAGATTT+GGG + Chr5:97771488-97771507 MsG0580029498.01.T01:intron 25.0%
! CTTATTTCGATAAACATTGT+AGG + Chr5:97769833-97769852 MsG0580029498.01.T01:intron 25.0%
! GAAAAATGTAAAGCAAAAGA+AGG + Chr5:97771907-97771926 MsG0580029498.01.T01:CDS 25.0%
! GTTGATATACAATTAGAAAC+TGG + Chr5:97772132-97772151 MsG0580029498.01.T01:CDS 25.0%
! TAGTAATAATGTAGCTGAAA+TGG + Chr5:97772420-97772439 MsG0580029498.01.T01:CDS 25.0%
! TATCAAATTGGAAAACAGTT+TGG + Chr5:97770633-97770652 MsG0580029498.01.T01:intron 25.0%
! TGATATACAATTAGAAACTG+GGG + Chr5:97772134-97772153 MsG0580029498.01.T01:CDS 25.0%
! TGTATAATAAGAATAACCTG+TGG - Chr5:97769663-97769682 None:intergenic 25.0%
! TTACAAGCAAAATTAGATTC+TGG - Chr5:97771520-97771539 None:intergenic 25.0%
! TTTCAGTTCTTTATCAAACA+AGG - Chr5:97771035-97771054 None:intergenic 25.0%
! TTTGAGTGACAAAAAGAAAT+CGG + Chr5:97772164-97772183 MsG0580029498.01.T01:CDS 25.0%
!! AAAATAATTGTGTTCTAGAC+AGG + Chr5:97769027-97769046 MsG0580029498.01.T01:intron 25.0%
!! AAATAATTGTGTTCTAGACA+GGG + Chr5:97769028-97769047 MsG0580029498.01.T01:intron 25.0%
!! AAGACTCGAAAGATTAATTT+TGG + Chr5:97768167-97768186 MsG0580029498.01.T01:intron 25.0%
!! AATTTTGCTTGTAATTTCAC+AGG + Chr5:97771526-97771545 MsG0580029498.01.T01:intron 25.0%
!! ACATGATCCATTGATTAAAA+GGG - Chr5:97768884-97768903 None:intergenic 25.0%
!! AGATATTTTTCACGATATTG+AGG - Chr5:97769374-97769393 None:intergenic 25.0%
!! ATAATGGAAACAATCCAATA+TGG - Chr5:97772014-97772033 None:intergenic 25.0%
!! ATTTTGCTTGTAATTTCACA+GGG + Chr5:97771527-97771546 MsG0580029498.01.T01:intron 25.0%
!! TGGTCTTGATTTAATTGTAA+CGG + Chr5:97768081-97768100 MsG0580029498.01.T01:intron 25.0%
!!! ACTTTTGTCATTTAGAAAAG+TGG + Chr5:97768947-97768966 MsG0580029498.01.T01:intron 25.0%
!!! AGATTTGTTTTTTTAGCACT+GGG + Chr5:97771311-97771330 MsG0580029498.01.T01:intron 25.0%
!!! CAAACATGTAATTTTTTTCC+GGG + Chr5:97769968-97769987 MsG0580029498.01.T01:intron 25.0%
!!! TAGATTTGTTTTTTTAGCAC+TGG + Chr5:97771310-97771329 MsG0580029498.01.T01:intron 25.0%
!!! TATCATTTTAGGGTTTGTTT+GGG + Chr5:97769718-97769737 MsG0580029498.01.T01:intron 25.0%
AAAAAGGCCAAAGAGTTTAT+TGG - Chr5:97771110-97771129 None:intergenic 30.0%
AAAAGAAATCGGCAAAGAAA+TGG + Chr5:97772175-97772194 MsG0580029498.01.T01:CDS 30.0%
AAACCTTAATGTTGTAGACA+GGG - Chr5:97771637-97771656 None:intergenic 30.0%
AACATAAGCTCTCATCATAA+AGG - Chr5:97769922-97769941 None:intergenic 30.0%
AAGTCACCCATATAAATACT+TGG - Chr5:97770223-97770242 None:intergenic 30.0%
ACCATGTCCAAGTATTTATA+TGG + Chr5:97770213-97770232 MsG0580029498.01.T01:intron 30.0%
AGAGTCAACTAAAATAAGAG+AGG - Chr5:97770401-97770420 None:intergenic 30.0%
AGCAAGAATGCTGAATAAAA+AGG - Chr5:97771126-97771145 None:intergenic 30.0%
ATAACATTTCCAACTACAAG+TGG + Chr5:97767836-97767855 MsG0580029498.01.T01:intron 30.0%
ATACAATACACCAATAGCAT+GGG + Chr5:97768797-97768816 MsG0580029498.01.T01:intron 30.0%
ATTGATGAAGGGAACAATTA+CGG + Chr5:97768118-97768137 MsG0580029498.01.T01:intron 30.0%
ATTGTTTCCTCAGTTTCTAA+AGG + Chr5:97771459-97771478 MsG0580029498.01.T01:intron 30.0%
CAGAAAATATCTGATAGAAG+AGG - Chr5:97772058-97772077 None:intergenic 30.0%
CATTAACGAAGGACTATATT+AGG - Chr5:97770033-97770052 None:intergenic 30.0%
CATTTACTTGCACAAAGATT+TGG + Chr5:97771487-97771506 MsG0580029498.01.T01:intron 30.0%
CCATGTCCAAGTATTTATAT+GGG + Chr5:97770214-97770233 MsG0580029498.01.T01:intron 30.0%
CTCTAGTAGTTTATCTTCAA+TGG + Chr5:97772533-97772552 MsG0580029498.01.T01:intron 30.0%
CTCTAGTCTAAGTTACATAA+TGG - Chr5:97772030-97772049 None:intergenic 30.0%
CTGTCTTTGTATGAATAATC+AGG + Chr5:97770713-97770732 MsG0580029498.01.T01:intron 30.0%
CTTCTATATTTGCACTCTTT+AGG + Chr5:97772363-97772382 MsG0580029498.01.T01:intron 30.0%
GAAATTCACTAAACACTTTC+AGG + Chr5:97771006-97771025 MsG0580029498.01.T01:intron 30.0%
GAAGATAAACTACTAGAGTT+TGG - Chr5:97772531-97772550 None:intergenic 30.0%
GCCTATGTTAGATTCTTATT+TGG + Chr5:97770567-97770586 MsG0580029498.01.T01:intron 30.0%
GCGACATCATTAAAATTAGT+GGG + Chr5:97770343-97770362 MsG0580029498.01.T01:CDS 30.0%
GGAAAACAGTTTGGTAAAAT+TGG + Chr5:97770642-97770661 MsG0580029498.01.T01:intron 30.0%
GGTCATTTATGTGATATTTC+AGG + Chr5:97772110-97772129 MsG0580029498.01.T01:intron 30.0%
GTATGAATGACATAGATTTG+TGG - Chr5:97772309-97772328 None:intergenic 30.0%
TAAACCTTAATGTTGTAGAC+AGG - Chr5:97771638-97771657 None:intergenic 30.0%
TAAGTTACTCAAGAAGACAT+TGG - Chr5:97772864-97772883 None:intergenic 30.0%
TAGAAGTTCGATAAAATACC+AGG - Chr5:97772349-97772368 None:intergenic 30.0%
TAGAGTCTAAACATTAACGA+AGG - Chr5:97770044-97770063 None:intergenic 30.0%
TATCAAACGAAGTAGTGAAA+GGG + Chr5:97769213-97769232 MsG0580029498.01.T01:CDS 30.0%
TATCTACTAGCATACTGTTT+GGG + Chr5:97769757-97769776 MsG0580029498.01.T01:intron 30.0%
TCAGATTCTTATGATGAAGA+AGG + Chr5:97771734-97771753 MsG0580029498.01.T01:intron 30.0%
TCCAATGAATGATTATGAAG+AGG - Chr5:97767817-97767836 None:intergenic 30.0%
TCCTCTTCATAATCATTCAT+TGG + Chr5:97767813-97767832 MsG0580029498.01.T01:intron 30.0%
TGATCCAACATCAAAACATA+AGG - Chr5:97769004-97769023 None:intergenic 30.0%
TGCGACATCATTAAAATTAG+TGG + Chr5:97770342-97770361 MsG0580029498.01.T01:CDS 30.0%
TTATCTACTAGCATACTGTT+TGG + Chr5:97769756-97769775 MsG0580029498.01.T01:intron 30.0%
TTCCATTGATATTTGAATGC+AGG + Chr5:97771222-97771241 MsG0580029498.01.T01:intron 30.0%
TTCCTGCATTCAAATATCAA+TGG - Chr5:97771227-97771246 None:intergenic 30.0%
TTGTTAAATAGCAGCTATAG+TGG + Chr5:97768196-97768215 MsG0580029498.01.T01:intron 30.0%
TTTGTAACTCACAACTACAA+TGG + Chr5:97771383-97771402 MsG0580029498.01.T01:intron 30.0%
! AAGCCATACTTGTTAAACTT+TGG - Chr5:97771810-97771829 None:intergenic 30.0%
! AATAATTGTGTTCTAGACAG+GGG + Chr5:97769029-97769048 MsG0580029498.01.T01:intron 30.0%
! AGATGCTATTTGATATATGC+AGG - Chr5:97768023-97768042 None:intergenic 30.0%
! AGCCATACTTGTTAAACTTT+GGG - Chr5:97771809-97771828 None:intergenic 30.0%
! ATGCAGTATTGCATGTATTT+TGG + Chr5:97769113-97769132 MsG0580029498.01.T01:intron 30.0%
! CACATGATCCATTGATTAAA+AGG - Chr5:97768885-97768904 None:intergenic 30.0%
! CATCATTAAAATTAGTGGGT+TGG + Chr5:97770347-97770366 MsG0580029498.01.T01:CDS 30.0%
! CGCTTAAACTTTTAGTGTTT+AGG + Chr5:97767889-97767908 MsG0580029498.01.T01:intron 30.0%
! CTGCTTTATAATTTTCTTCC+TGG + Chr5:97772328-97772347 MsG0580029498.01.T01:intron 30.0%
! CTTTTGCTTTACATTTTTCC+TGG - Chr5:97771906-97771925 None:intergenic 30.0%
! TTAGGTACTTTAAGCTTTAG+AGG + Chr5:97767907-97767926 MsG0580029498.01.T01:intron 30.0%
! TTTCAAAGAAATTAGCCTGA+TGG + Chr5:97771191-97771210 MsG0580029498.01.T01:intron 30.0%
! TTTCACAATTAACAGGTTGA+GGG + Chr5:97769540-97769559 MsG0580029498.01.T01:intron 30.0%
! TTTTCACAATTAACAGGTTG+AGG + Chr5:97769539-97769558 MsG0580029498.01.T01:intron 30.0%
!! AGACTCTAATTTGTTGACAT+CGG + Chr5:97770056-97770075 MsG0580029498.01.T01:intron 30.0%
!! AGTTGACTCTTTTTACTTGT+GGG + Chr5:97770411-97770430 MsG0580029498.01.T01:intron 30.0%
!! CTCGAAAGATTAATTTTGGT+CGG + Chr5:97768171-97768190 MsG0580029498.01.T01:intron 30.0%
!! CTGTTTTCCAATTTGATAAC+TGG - Chr5:97770631-97770650 None:intergenic 30.0%
!! TAGTTGACTCTTTTTACTTG+TGG + Chr5:97770410-97770429 MsG0580029498.01.T01:intron 30.0%
!! TATAGAACATAGTTTTGCCT+GGG + Chr5:97770142-97770161 MsG0580029498.01.T01:intron 30.0%
!! TTATAGAACATAGTTTTGCC+TGG + Chr5:97770141-97770160 MsG0580029498.01.T01:intron 30.0%
!!! AATCTGCATATTGTTTTTGC+TGG + Chr5:97770466-97770485 MsG0580029498.01.T01:intron 30.0%
!!! GTATCATTTTAGGGTTTGTT+TGG + Chr5:97769717-97769736 MsG0580029498.01.T01:intron 30.0%
AAAAAGAAGGCAACATCTTG+TGG + Chr5:97771255-97771274 MsG0580029498.01.T01:intron 35.0%
AAAAGAAACGTTGTCAGTCA+TGG - Chr5:97768358-97768377 None:intergenic 35.0%
AAAAGAAGGCAACATCTTGT+GGG + Chr5:97771256-97771275 MsG0580029498.01.T01:intron 35.0%
AAAGGTAGCGAAAATACCTT+GGG - Chr5:97767762-97767781 None:intergenic 35.0%
AAATCCTCCCTCAAAGAATT+CGG + Chr5:97769416-97769435 MsG0580029498.01.T01:CDS 35.0%
AAATGCCGAGACATACATTA+TGG + Chr5:97772639-97772658 MsG0580029498.01.T01:CDS 35.0%
AACCTCTTGTGTAAAGAACA+AGG + Chr5:97768765-97768784 MsG0580029498.01.T01:intron 35.0%
AATAGAACCTCTTACCTTCA+AGG - Chr5:97772452-97772471 None:intergenic 35.0%
AATCTACACACATACCTTCA+AGG - Chr5:97771296-97771315 None:intergenic 35.0%
AATGCCGAGACATACATTAT+GGG + Chr5:97772640-97772659 MsG0580029498.01.T01:CDS 35.0%
ACAGATTTCTCCTTCCATAT+TGG + Chr5:97771997-97772016 MsG0580029498.01.T01:intron 35.0%
ACTGAGAATATGTGCATCTA+GGG + Chr5:97770665-97770684 MsG0580029498.01.T01:intron 35.0%
AGAATCAATGTCACACACTT+GGG + Chr5:97772833-97772852 MsG0580029498.01.T01:three_prime_UTR 35.0%
AGAGATACCGAATTCTTTGA+GGG - Chr5:97769426-97769445 None:intergenic 35.0%
CAAAACAAAGAAAACCACAG+AGG - Chr5:97770526-97770545 None:intergenic 35.0%
CAATGCTTAACTTTATCAGC+AGG + Chr5:97769161-97769180 MsG0580029498.01.T01:intron 35.0%
CATACAATACACCAATAGCA+TGG + Chr5:97768796-97768815 MsG0580029498.01.T01:intron 35.0%
CCCATATAAATACTTGGACA+TGG - Chr5:97770217-97770236 None:intergenic 35.0%
CTCCCAAAGTTTAACAAGTA+TGG + Chr5:97771804-97771823 MsG0580029498.01.T01:intron 35.0%
CTGCTGATAAAGTTAAGCAT+TGG - Chr5:97769163-97769182 None:intergenic 35.0%
CTTGTGTAAAGAACAAGGTA+AGG + Chr5:97768770-97768789 MsG0580029498.01.T01:intron 35.0%
GATTCTTAATCCCAAGTGTT+GGG + Chr5:97770593-97770612 MsG0580029498.01.T01:intron 35.0%
GCTATAACACAATTGCATAG+CGG + Chr5:97768303-97768322 MsG0580029498.01.T01:intron 35.0%
GTAAACTGAACGAAACCATA+AGG - Chr5:97769079-97769098 None:intergenic 35.0%
GTATCAAACGAAGTAGTGAA+AGG + Chr5:97769212-97769231 MsG0580029498.01.T01:CDS 35.0%
TACCTTGTTCTTTACACAAG+AGG - Chr5:97768770-97768789 None:intergenic 35.0%
TAGTGAAAGGGAAGAAGAAA+GGG + Chr5:97769225-97769244 MsG0580029498.01.T01:CDS 35.0%
TATCTCACTTGAATCCAAAC+TGG + Chr5:97772561-97772580 MsG0580029498.01.T01:intron 35.0%
TCCCTTCATCAATAACACAT+GGG - Chr5:97768111-97768130 None:intergenic 35.0%
TCTGAAGGGAAAATTGTACA+AGG - Chr5:97772816-97772835 None:intergenic 35.0%
TGATTCTTAATCCCAAGTGT+TGG + Chr5:97770592-97770611 MsG0580029498.01.T01:intron 35.0%
TGGAAACAATCCAATATGGA+AGG - Chr5:97772010-97772029 None:intergenic 35.0%
TGTAATTTCACAGGGAAACA+CGG + Chr5:97771535-97771554 MsG0580029498.01.T01:intron 35.0%
TTCAACAACCAGAAAGACTA+AGG + Chr5:97769575-97769594 MsG0580029498.01.T01:CDS 35.0%
TTCACGATATTGAGGAAACA+GGG - Chr5:97769366-97769385 None:intergenic 35.0%
TTCCCTTCATCAATAACACA+TGG - Chr5:97768112-97768131 None:intergenic 35.0%
TTGAAGGTAAGAGGTTCTAT+TGG + Chr5:97772451-97772470 MsG0580029498.01.T01:intron 35.0%
TTGAGAAATTCGATCCATCA+TGG + Chr5:97769303-97769322 MsG0580029498.01.T01:CDS 35.0%
TTGTCCATCTTACTTGGTTA+AGG + Chr5:97768379-97768398 MsG0580029498.01.T01:intron 35.0%
TTTCACGATATTGAGGAAAC+AGG - Chr5:97769367-97769386 None:intergenic 35.0%
! AAAGAAATTAGCCTGATGGT+AGG + Chr5:97771195-97771214 MsG0580029498.01.T01:intron 35.0%
! AAGGTTTGAAGCAAGTTAGA+AGG + Chr5:97771579-97771598 MsG0580029498.01.T01:CDS 35.0%
! ATAAGGATCCTTAGTCTTTC+TGG - Chr5:97769586-97769605 None:intergenic 35.0%
! TCTTTAGGAACCTGCAAATT+TGG + Chr5:97772378-97772397 MsG0580029498.01.T01:intron 35.0%
! TGGATCATGTGTTGAACTTT+TGG + Chr5:97768894-97768913 MsG0580029498.01.T01:intron 35.0%
! TGTGTTCTTCATTCTAGAGA+TGG + Chr5:97772712-97772731 MsG0580029498.01.T01:three_prime_UTR 35.0%
! TTACACAAGAGGTTGTTTCA+AGG - Chr5:97768759-97768778 None:intergenic 35.0%
! TTGGTGTCCAGTTATCAAAT+TGG + Chr5:97770621-97770640 MsG0580029498.01.T01:intron 35.0%
! TTGGTTGCCCTTTTAATCAA+TGG + Chr5:97768874-97768893 MsG0580029498.01.T01:intron 35.0%
! TTTTCCTGGAAAAAGAAGTG+AGG - Chr5:97771892-97771911 None:intergenic 35.0%
!! ATTAAATTCTAAGGCGTGCT+TGG + Chr5:97772089-97772108 MsG0580029498.01.T01:intron 35.0%
!! CTTTTGTTGTCCATCTTACT+TGG + Chr5:97768373-97768392 MsG0580029498.01.T01:intron 35.0%
!! GACTCTAATTTGTTGACATC+GGG + Chr5:97770057-97770076 MsG0580029498.01.T01:intron 35.0%
!! GTTGACTCTTTTTACTTGTG+GGG + Chr5:97770412-97770431 MsG0580029498.01.T01:intron 35.0%
!! TATTAATTTGGTGCCTCAGA+AGG - Chr5:97770939-97770958 None:intergenic 35.0%
!! TCTGTAATGGGTTCATACAA+AGG + Chr5:97771560-97771579 MsG0580029498.01.T01:CDS 35.0%
!! TGTGTGACATTGATTCTGAA+GGG - Chr5:97772830-97772849 None:intergenic 35.0%
!! TGTTTGGGTTGACTTATTTG+AGG + Chr5:97769733-97769752 MsG0580029498.01.T01:intron 35.0%
!! TTGTACTATTTTGGGAGTTG+TGG + Chr5:97772916-97772935 MsG0580029498.01.T01:three_prime_UTR 35.0%
!!! ACTGCCTTATGTTTTGATGT+TGG + Chr5:97768997-97769016 MsG0580029498.01.T01:intron 35.0%
!!! TTTTTTCCGGGAATCAAACT+GGG + Chr5:97769980-97769999 MsG0580029498.01.T01:intron 35.0%
!!! TTTTTTTCCGGGAATCAAAC+TGG + Chr5:97769979-97769998 MsG0580029498.01.T01:intron 35.0%
AAAAAAACAGCGCAAGACCT+TGG - Chr5:97772274-97772293 None:intergenic 40.0%
AAAAAACAGCGCAAGACCTT+GGG - Chr5:97772273-97772292 None:intergenic 40.0%
AAACCTATCCCAGTTCTCTT+GGG - Chr5:97771784-97771803 None:intergenic 40.0%
ACAAAGAAAACCACAGAGGA+AGG - Chr5:97770522-97770541 None:intergenic 40.0%
ACCAAACATACCCAACACTT+GGG - Chr5:97770606-97770625 None:intergenic 40.0%
ACCTTCAAGGTGGAAGAATT+GGG - Chr5:97771283-97771302 None:intergenic 40.0%
AGAGTTTATTGGAGCATGGA+AGG - Chr5:97771099-97771118 None:intergenic 40.0%
AGCACGATAAACCAAAACCA+TGG + Chr5:97769249-97769268 MsG0580029498.01.T01:CDS 40.0%
ATAAGAATAACCTGTGGAGC+AGG - Chr5:97769657-97769676 None:intergenic 40.0%
ATCGTCAATGAAGGAAACGA+AGG - Chr5:97767793-97767812 None:intergenic 40.0%
ATGCCGAGACATACATTATG+GGG + Chr5:97772641-97772660 MsG0580029498.01.T01:CDS 40.0%
ATTCCACTTTCGTTCCATGA+TGG - Chr5:97769320-97769339 None:intergenic 40.0%
CAAAGAAAACCACAGAGGAA+GGG - Chr5:97770521-97770540 None:intergenic 40.0%
CAGAATCAATGTCACACACT+TGG + Chr5:97772832-97772851 MsG0580029498.01.T01:three_prime_UTR 40.0%
CAGAGATACCGAATTCTTTG+AGG - Chr5:97769427-97769446 None:intergenic 40.0%
CAGGAAAAAGCTAGGAAGTT+TGG + Chr5:97772592-97772611 MsG0580029498.01.T01:intron 40.0%
CATCAACAAAACTGATGCAG+AGG - Chr5:97771869-97771888 None:intergenic 40.0%
CATGCAATACTGCATTATGC+AGG - Chr5:97769108-97769127 None:intergenic 40.0%
CCAAAGAGTTTATTGGAGCA+TGG - Chr5:97771103-97771122 None:intergenic 40.0%
CCATGCTCCAATAAACTCTT+TGG + Chr5:97771100-97771119 MsG0580029498.01.T01:intron 40.0%
CCCTTCATCAATAACACATG+GGG - Chr5:97768110-97768129 None:intergenic 40.0%
GAAACGAAGGATGAGAAGAA+AGG - Chr5:97767780-97767799 None:intergenic 40.0%
GAAAGGTAGCGAAAATACCT+TGG - Chr5:97767763-97767782 None:intergenic 40.0%
GACTGAGAATATGTGCATCT+AGG + Chr5:97770664-97770683 MsG0580029498.01.T01:intron 40.0%
GAGACCTTAACCAAGTAAGA+TGG - Chr5:97768386-97768405 None:intergenic 40.0%
GCAAGTTAGAAGGATTGTTG+AGG + Chr5:97771589-97771608 MsG0580029498.01.T01:CDS 40.0%
GCACGATAAACCAAAACCAT+GGG + Chr5:97769250-97769269 MsG0580029498.01.T01:CDS 40.0%
GGAAACACGGTTTCTGTAAT+GGG + Chr5:97771548-97771567 MsG0580029498.01.T01:CDS 40.0%
GGAAATCATGTAGTAGTCAC+CGG + Chr5:97770793-97770812 MsG0580029498.01.T01:intron 40.0%
GTAGTGAAAGGGAAGAAGAA+AGG + Chr5:97769224-97769243 MsG0580029498.01.T01:CDS 40.0%
TAAATTCTGCTTCGCTGTAG+CGG - Chr5:97768233-97768252 None:intergenic 40.0%
TAATTATTGCTCCAGCAGTC+TGG - Chr5:97770897-97770916 None:intergenic 40.0%
TACCTTCAAGGTGGAAGAAT+TGG - Chr5:97771284-97771303 None:intergenic 40.0%
TAGGAACCTGCAAATTTGGT+GGG + Chr5:97772382-97772401 MsG0580029498.01.T01:intron 40.0%
TATCTCTGCTGAACTCAACT+TGG + Chr5:97769439-97769458 MsG0580029498.01.T01:CDS 40.0%
TCCTGTGACTGAAAAGTCAT+GGG + Chr5:97768726-97768745 MsG0580029498.01.T01:intron 40.0%
TCTCTCATCAAATTTAGCCC+AGG - Chr5:97770162-97770181 None:intergenic 40.0%
TCTTCACTTCCACTTGTAGT+TGG - Chr5:97767848-97767867 None:intergenic 40.0%
TGAAATGGCAATGTCCTTGA+AGG + Chr5:97772435-97772454 MsG0580029498.01.T01:CDS 40.0%
TGAAGAGGAATCGTCAATGA+AGG - Chr5:97767802-97767821 None:intergenic 40.0%
TGACCCCATAATGTATGTCT+CGG - Chr5:97772647-97772666 None:intergenic 40.0%
TTAGGAACCTGCAAATTTGG+TGG + Chr5:97772381-97772400 MsG0580029498.01.T01:intron 40.0%
TTGAGGGAGGATTTAACAAG+TGG - Chr5:97769410-97769429 None:intergenic 40.0%
TTTAGCGATCTATCCTTCTG+AGG + Chr5:97770923-97770942 MsG0580029498.01.T01:intron 40.0%
! AAAGGAGTATACGGCTTCTT+CGG - Chr5:97771944-97771963 None:intergenic 40.0%
! AAATTTGGTGGGTAACTCTG+AGG + Chr5:97772393-97772412 MsG0580029498.01.T01:CDS 40.0%
! ACAGATAACCTGACCTGTTT+TGG - Chr5:97770697-97770716 None:intergenic 40.0%
! AGTCTGTAACATGTCACTTC+TGG + Chr5:97772789-97772808 MsG0580029498.01.T01:three_prime_UTR 40.0%
! CCCCATGTGTTATTGATGAA+GGG + Chr5:97768107-97768126 MsG0580029498.01.T01:intron 40.0%
! GTCTGTTGATTGTGTTTCTC+AGG + Chr5:97770290-97770309 MsG0580029498.01.T01:intron 40.0%
! TCCCCATGTGTTATTGATGA+AGG + Chr5:97768106-97768125 MsG0580029498.01.T01:intron 40.0%
! TCTAGACAGGGGTATAGATT+TGG + Chr5:97769040-97769059 MsG0580029498.01.T01:intron 40.0%
! TCTAGGGTCAAATCCAAAAC+AGG + Chr5:97770681-97770700 MsG0580029498.01.T01:intron 40.0%
! TTTCCTCAGTTTCTAAAGGC+TGG + Chr5:97771463-97771482 MsG0580029498.01.T01:intron 40.0%
!! AACTTCCTAGCTTTTTCCTG+TGG - Chr5:97772592-97772611 None:intergenic 40.0%
!! GTGTGTGACATTGATTCTGA+AGG - Chr5:97772831-97772850 None:intergenic 40.0%
AAAGAAATGGCAAGAGAGGC+AGG + Chr5:97772188-97772207 MsG0580029498.01.T01:CDS 45.0%
AAGACCATAGTTGCCAATCC+CGG - Chr5:97768068-97768087 None:intergenic 45.0%
AATGGAAGCTTCCTACCATC+AGG - Chr5:97771209-97771228 None:intergenic 45.0%
ACACATGTTAACCAGACTGC+TGG + Chr5:97770883-97770902 MsG0580029498.01.T01:intron 45.0%
ACGATATTGAGGAAACAGGG+TGG - Chr5:97769363-97769382 None:intergenic 45.0%
ACGTTGTCAGTCATGGATAG+CGG - Chr5:97768351-97768370 None:intergenic 45.0%
ACTCACAACTACAATGGTGC+AGG + Chr5:97771389-97771408 MsG0580029498.01.T01:intron 45.0%
AGCAGGTACAGAAACAGCTA+TGG + Chr5:97769178-97769197 MsG0580029498.01.T01:intron 45.0%
AGCATGGAAGGAAAAACCTC+TGG - Chr5:97771087-97771106 None:intergenic 45.0%
AGGTTGTTACATTCTCGTCC+AGG + Chr5:97771428-97771447 MsG0580029498.01.T01:CDS 45.0%
ATCTGTTGTCTCACCTTGCT+AGG - Chr5:97771983-97772002 None:intergenic 45.0%
ATGGAAGGAAAAACCTCTGG+GGG - Chr5:97771084-97771103 None:intergenic 45.0%
ATGTTAGGATCGTCATCCCA+TGG - Chr5:97769269-97769288 None:intergenic 45.0%
CACCAAACATACCCAACACT+TGG - Chr5:97770607-97770626 None:intergenic 45.0%
CAGGCTCTTGAAATACTCAC+AGG + Chr5:97771408-97771427 MsG0580029498.01.T01:intron 45.0%
CATGGAAGGAAAAACCTCTG+GGG - Chr5:97771085-97771104 None:intergenic 45.0%
CGAATTTCTCAACCTTCCAG+TGG - Chr5:97769295-97769314 None:intergenic 45.0%
CTAAGACCCAGTTTGATTCC+CGG - Chr5:97769989-97770008 None:intergenic 45.0%
CTACACACATACCTTCAAGG+TGG - Chr5:97771293-97771312 None:intergenic 45.0%
GAAACCTATCCCAGTTCTCT+TGG - Chr5:97771785-97771804 None:intergenic 45.0%
GAGTTACCCACCAAATTTGC+AGG - Chr5:97772391-97772410 None:intergenic 45.0%
GATCCATCATGGAACGAAAG+TGG + Chr5:97769314-97769333 MsG0580029498.01.T01:CDS 45.0%
GCAATGTCCTTGAAGGTAAG+AGG + Chr5:97772442-97772461 MsG0580029498.01.T01:intron 45.0%
GCACCCTGTCTACAACATTA+AGG + Chr5:97771631-97771650 MsG0580029498.01.T01:CDS 45.0%
GCATGGAAGGAAAAACCTCT+GGG - Chr5:97771086-97771105 None:intergenic 45.0%
GGCATCTTGCTTATGCCTTA+TGG + Chr5:97769061-97769080 MsG0580029498.01.T01:intron 45.0%
GGGAAACACGGTTTCTGTAA+TGG + Chr5:97771547-97771566 MsG0580029498.01.T01:intron 45.0%
GGTCAAATCCAAAACAGGTC+AGG + Chr5:97770686-97770705 MsG0580029498.01.T01:intron 45.0%
GTCCTGTGACTGAAAAGTCA+TGG + Chr5:97768725-97768744 MsG0580029498.01.T01:intron 45.0%
TAGTTGCCAATCCCGGATAA+CGG - Chr5:97768061-97768080 None:intergenic 45.0%
TATACTACTATGGGGAGCCT+TGG + Chr5:97768684-97768703 MsG0580029498.01.T01:intron 45.0%
TCCCAATTCTTCCACCTTGA+AGG + Chr5:97771279-97771298 MsG0580029498.01.T01:intron 45.0%
TGCAATGGCAGTTGCAATGA+AGG + Chr5:97770772-97770791 MsG0580029498.01.T01:intron 45.0%
TTCCTCCACAGGAAAAAGCT+AGG + Chr5:97772584-97772603 MsG0580029498.01.T01:intron 45.0%
! ACCCATGACTTTTCAGTCAC+AGG - Chr5:97768730-97768749 None:intergenic 45.0%
! GATACCGAATTCTTTGAGGG+AGG - Chr5:97769423-97769442 None:intergenic 45.0%
! GATGCCTCACTTCTTTTTCC+AGG + Chr5:97771885-97771904 MsG0580029498.01.T01:intron 45.0%
! TGTCCAGCCTTTAGAAACTG+AGG - Chr5:97771469-97771488 None:intergenic 45.0%
! TTATCCGGGATTGGCAACTA+TGG + Chr5:97768061-97768080 MsG0580029498.01.T01:intron 45.0%
!! ACAACTTTACCGATTCGCCA+AGG - Chr5:97768704-97768723 None:intergenic 45.0%
!! GCAACTGTGATTTGCTGCAA+TGG + Chr5:97770757-97770776 MsG0580029498.01.T01:intron 45.0%
!! TAAGCATTGGTTAGCCTGTG+CGG - Chr5:97769150-97769169 None:intergenic 45.0%
!! TCCCAAGTGTTGGGTATGTT+TGG + Chr5:97770602-97770621 MsG0580029498.01.T01:intron 45.0%
!! TTCCTAGCTTTTTCCTGTGG+AGG - Chr5:97772589-97772608 None:intergenic 45.0%
ACAGTTGCGATGGCTAACAG+GGG - Chr5:97770745-97770764 None:intergenic 50.0%
ACCTTCCAGTGGTCGATGTT+AGG - Chr5:97769284-97769303 None:intergenic 50.0%
ACGATCCTAACATCGACCAC+TGG + Chr5:97769276-97769295 MsG0580029498.01.T01:CDS 50.0%
AGAAAACCACAGAGGAAGGG+AGG - Chr5:97770518-97770537 None:intergenic 50.0%
CAACGAGCTGAGTTGTTCGA+CGG - Chr5:97767734-97767753 None:intergenic 50.0%
CACAGTTGCGATGGCTAACA+GGG - Chr5:97770746-97770765 None:intergenic 50.0%
CAGCGTTATTGTACTGCAGC+CGG - Chr5:97770815-97770834 None:intergenic 50.0%
CGGCAAAGAAATGGCAAGAG+AGG + Chr5:97772184-97772203 MsG0580029498.01.T01:CDS 50.0%
GCAACAAAAAGAACCCCCAG+AGG + Chr5:97771068-97771087 MsG0580029498.01.T01:intron 50.0%
GCAGCAAATCACAGTTGCGA+TGG - Chr5:97770755-97770774 None:intergenic 50.0%
TCACAGTTGCGATGGCTAAC+AGG - Chr5:97770747-97770766 None:intergenic 50.0%
TCCTAACATCGACCACTGGA+AGG + Chr5:97769280-97769299 MsG0580029498.01.T01:CDS 50.0%
TTCCTGTGGAGGAACCAGTT+TGG - Chr5:97772578-97772597 None:intergenic 50.0%
TTGAGGAAACAGGGTGGAGA+AGG - Chr5:97769357-97769376 None:intergenic 50.0%
TTGCCCAAGAGAACTGGGAT+AGG + Chr5:97771778-97771797 MsG0580029498.01.T01:CDS 50.0%
! ATCCAAACTGGTTCCTCCAC+AGG + Chr5:97772573-97772592 MsG0580029498.01.T01:intron 50.0%
! GGAGGAGGGAAAGGAGTATA+CGG - Chr5:97771953-97771972 None:intergenic 50.0%
! GGATCGTCATCCCATGGTTT+TGG - Chr5:97769263-97769282 None:intergenic 50.0%
!! TAGTGGGTTGGTTCGCAACA+AGG + Chr5:97770359-97770378 MsG0580029498.01.T01:CDS 50.0%
AAACAGCGCAAGACCTTGGG+TGG - Chr5:97772270-97772289 None:intergenic 55.0%
AACAGCGCAAGACCTTGGGT+GGG - Chr5:97772269-97772288 None:intergenic 55.0%
AATAGCATGGGACCCCTTCC+TGG + Chr5:97768809-97768828 MsG0580029498.01.T01:intron 55.0%
ACCTTGCTAGGCTGTTGAGG+AGG - Chr5:97771971-97771990 None:intergenic 55.0%
AGCATCGCAGGATCCAGGAA+GGG - Chr5:97768825-97768844 None:intergenic 55.0%
AGGAAGGGGTCCCATGCTAT+TGG - Chr5:97768810-97768829 None:intergenic 55.0%
CAAGACCTTGGGTGGGACAA+AGG - Chr5:97772262-97772281 None:intergenic 55.0%
CACTAAAGCTCCAGCATCGC+AGG - Chr5:97768837-97768856 None:intergenic 55.0%
CAGTTCTCTTGGGCAAGTGC+GGG - Chr5:97771774-97771793 None:intergenic 55.0%
CCAGTTCTCTTGGGCAAGTG+CGG - Chr5:97771775-97771794 None:intergenic 55.0%
CGCACTTGCCCAAGAGAACT+GGG + Chr5:97771773-97771792 MsG0580029498.01.T01:CDS 55.0%
CGGTGGTTGCGCAAAATGTG+AGG - Chr5:97767683-97767702 None:intergenic 55.0%
CTCACCTTGCTAGGCTGTTG+AGG - Chr5:97771974-97771993 None:intergenic 55.0%
GCTGAGTTGTTCGACGGTGA+TGG - Chr5:97767728-97767747 None:intergenic 55.0%
GTCGGCACTCGTAAGGAAGA+CGG - Chr5:97767703-97767722 None:intergenic 55.0%
TATGGGGAGCCTTGGCGAAT+CGG + Chr5:97768692-97768711 MsG0580029498.01.T01:intron 55.0%
TCAGCTCGTTGCTCAACCCA+AGG + Chr5:97767743-97767762 MsG0580029498.01.T01:five_prime_UTR 55.0%
TCCTCCTCAACAGCCTAGCA+AGG + Chr5:97771967-97771986 MsG0580029498.01.T01:CDS 55.0%
TGCTAGGCTGTTGAGGAGGA+GGG - Chr5:97771967-97771986 None:intergenic 55.0%
TTCCCTCCGTTATCCGGGAT+TGG + Chr5:97768052-97768071 MsG0580029498.01.T01:intron 55.0%
TTGCTAGGCTGTTGAGGAGG+AGG - Chr5:97771968-97771987 None:intergenic 55.0%
! GAGTTGTTCGACGGTGATGG+TGG - Chr5:97767725-97767744 None:intergenic 55.0%
! GTTAGCCTGTGCGGTGGATT+AGG - Chr5:97769141-97769160 None:intergenic 55.0%
! TCGAAGTGTTCCTGCTCCAC+AGG + Chr5:97769644-97769663 MsG0580029498.01.T01:CDS 55.0%
! TTGCCAATCCCGGATAACGG+AGG - Chr5:97768058-97768077 None:intergenic 55.0%
!! TGCCAATCCCGGATAACGGA+GGG - Chr5:97768057-97768076 None:intergenic 55.0%
!! TGTTCGACGGTGATGGTGGT+CGG - Chr5:97767721-97767740 None:intergenic 55.0%
ACCACAGAGGAAGGGAGGAC+AGG - Chr5:97770513-97770532 None:intergenic 60.0%
CAGCATCGCAGGATCCAGGA+AGG - Chr5:97768826-97768845 None:intergenic 60.0%
CCGAGCTTCCCTCCGTTATC+CGG + Chr5:97768046-97768065 MsG0580029498.01.T01:intron 60.0%
CCGCACTTGCCCAAGAGAAC+TGG + Chr5:97771772-97771791 MsG0580029498.01.T01:CDS 60.0%
CGAGCTTCCCTCCGTTATCC+GGG + Chr5:97768047-97768066 MsG0580029498.01.T01:intron 60.0%
CGAGTCCTTTGTCCCACCCA+AGG + Chr5:97772254-97772273 MsG0580029498.01.T01:CDS 60.0%
CTTCCTGGATCCTGCGATGC+TGG + Chr5:97768824-97768843 MsG0580029498.01.T01:intron 60.0%
GCATCGCAGGATCCAGGAAG+GGG - Chr5:97768824-97768843 None:intergenic 60.0%
GGCACTCGTAAGGAAGACGG+TGG - Chr5:97767700-97767719 None:intergenic 60.0%
GGCTGTTGAGGAGGAGGGAA+AGG - Chr5:97771962-97771981 None:intergenic 60.0%
TCCTGTCCTCCCTTCCTCTG+TGG + Chr5:97770509-97770528 MsG0580029498.01.T01:intron 60.0%
TGGTGCCTAATCCACCGCAC+AGG + Chr5:97769133-97769152 MsG0580029498.01.T01:intron 60.0%
! GATGGTGGTCGGCACTCGTA+AGG - Chr5:97767710-97767729 None:intergenic 60.0%
!! CCGGATAACGGAGGGAAGCT+CGG - Chr5:97768049-97768068 None:intergenic 60.0%
!! GCATTGGTTAGCCTGTGCGG+TGG - Chr5:97769147-97769166 None:intergenic 60.0%
GCTCCAGCATCGCAGGATCC+AGG - Chr5:97768830-97768849 None:intergenic 65.0%
GCAAGAGAGGCAGGCGCAGC+AGG + Chr5:97772197-97772216 MsG0580029498.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 97767676 97773016 97767676 ID=MsG0580029498.01;Name=MsG0580029498.01
Chr5 mRNA 97767676 97773016 97767676 ID=MsG0580029498.01.T01;Parent=MsG0580029498.01;Name=MsG0580029498.01.T01;_AED=0.41;_eAED=0.41;_QI=103|0.9|1|1|0.9|0.81|11|305|361
Chr5 exon 97767676 97767764 97767676 ID=MsG0580029498.01.T01:exon:25259;Parent=MsG0580029498.01.T01
Chr5 exon 97769183 97769460 97769183 ID=MsG0580029498.01.T01:exon:25260;Parent=MsG0580029498.01.T01
Chr5 exon 97769555 97769665 97769555 ID=MsG0580029498.01.T01:exon:25261;Parent=MsG0580029498.01.T01
Chr5 exon 97770312 97770380 97770312 ID=MsG0580029498.01.T01:exon:25262;Parent=MsG0580029498.01.T01
Chr5 exon 97771411 97771449 97771411 ID=MsG0580029498.01.T01:exon:25263;Parent=MsG0580029498.01.T01
Chr5 exon 97771548 97771652 97771548 ID=MsG0580029498.01.T01:exon:25264;Parent=MsG0580029498.01.T01
Chr5 exon 97771738 97771820 97771738 ID=MsG0580029498.01.T01:exon:25265;Parent=MsG0580029498.01.T01
Chr5 exon 97771907 97771988 97771907 ID=MsG0580029498.01.T01:exon:25266;Parent=MsG0580029498.01.T01
Chr5 exon 97772132 97772275 97772132 ID=MsG0580029498.01.T01:exon:25267;Parent=MsG0580029498.01.T01
Chr5 exon 97772385 97772456 97772385 ID=MsG0580029498.01.T01:exon:25268;Parent=MsG0580029498.01.T01
Chr5 exon 97772595 97773016 97772595 ID=MsG0580029498.01.T01:exon:25269;Parent=MsG0580029498.01.T01
Chr5 five_prime_UTR 97767676 97767764 97767676 ID=MsG0580029498.01.T01:five_prime_utr;Parent=MsG0580029498.01.T01
Chr5 five_prime_UTR 97769183 97769196 97769183 ID=MsG0580029498.01.T01:five_prime_utr;Parent=MsG0580029498.01.T01
Chr5 CDS 97769197 97769460 97769197 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97769555 97769665 97769555 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97770312 97770380 97770312 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97771411 97771449 97771411 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97771548 97771652 97771548 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97771738 97771820 97771738 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97771907 97771988 97771907 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97772132 97772275 97772132 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97772385 97772456 97772385 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 CDS 97772595 97772711 97772595 ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5 three_prime_UTR 97772712 97773016 97772712 ID=MsG0580029498.01.T01:three_prime_utr;Parent=MsG0580029498.01.T01
Gene Sequence

>MsG0580029498.01.T01

ATGGACGAGAATGACGTATCAAACGAAGTAGTGAAAGGGAAGAAGAAAGGGAAGCACGATAAACCAAAACCATGGGATGACGATCCTAACATCGACCACTGGAAGGTTGAGAAATTCGATCCATCATGGAACGAAAGTGGAATGCTTGAAGTCAGTTCCTTCTCCACCCTGTTTCCTCAATATCGTGAAAAATATCTTCAAGAAGCTTGGCCACTTGTTAAATCCTCCCTCAAAGAATTCGGTATCTCTGCTGAACTCAACTTGGTTGAGGGTTCAATGACTGTTTCAACAACCAGAAAGACTAAGGATCCTTATATTATTGTTAAAGCTAGGGATCTTATCAGACTTCTTTCTCGAAGTGTTCCTGCTCCACAGGCAATAAAAGTACTTGATGATGAAATGCAATGCGACATCATTAAAATTAGTGGGTTGGTTCGCAACAAGGCTCTTGAAATACTCACAGGTTGTTACATTCTCGTCCAGGGAAACACGGTTTCTGTAATGGGTTCATACAAAGGTTTGAAGCAAGTTAGAAGGATTGTTGAGGAATGCATGCTGAATAAAATGCACCCTGTCTACAACATTAAGATTCTTATGATGAAGAAGGAACTTGAAAAAGATCCCGCACTTGCCCAAGAGAACTGGGATAGGTTTCTCCCAAAGTTTAACAAGAAAAATGTAAAGCAAAAGAAGGTTAACGCTAAACCGAAGAAGCCGTATACTCCTTTCCCTCCTCCTCAACAGCCTAGCAAGGTTGATATACAATTAGAAACTGGGGAGTACTTTTTGAGTGACAAAAAGAAATCGGCAAAGAAATGGCAAGAGAGGCAGGCGCAGCAGGCAGAAAAAACTGCTGAAAACAAAAGAAAACGAGACGAGTCCTTTGTCCCACCCAAGGAACCTGCAAATTTGGTGGGTAACTCTGAGGATGCTAGTAATAATGTAGCTGAAATGGCAATGTCCTTGAAGGAAAAAGCTAGGAAGTTTGGCAAGCGCAAATCTGAAGAAAATATAAATGCCGAGACATACATTATGGGGTCATCAGAACAACCATCAAAAAAGAAATCTAAGAAGCAAAAGTCTTAG
Protein sequence

>MsG0580029498.01.T01

MDENDVSNEVVKGKKKGKHDKPKPWDDDPNIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECMLNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPPPQQPSKVDIQLETGEYFLSDKKKSAKKWQERQAQQAEKTAENKRKRDESFVPPKEPANLVGNSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMGSSEQPSKKKSKKQKS*