AlfalfaGEDB | MsG0580029498.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029498.01

KEGG: K06961
GO: GO:0003723
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029498.01.T01	KEH28341.1	94.474	380	2	1	1	361	46	425	0	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029498.01.T01	O74777	54.403	318	122	5	3	300	5	319	2.63E-109	325

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029498.01.T01	A0A072UG01	94.474	380	2	1	1	361	46	425	0.0	723

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280010519.01	MsG0580029498.01	0.802829	4.658119e-49	2.304827e-46
MsG0380016678.01	MsG0580029498.01	0.812835	3.471796e-51	2.230414e-48
MsG0380016760.01	MsG0580029498.01	0.805942	1.046415e-49	5.608334e-47
MsG0480020911.01	MsG0580029498.01	0.818972	1.482825e-52	1.126564e-49
MsG0480022363.01	MsG0580029498.01	0.806253	8.999821e-50	4.861988e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029498.01.T01	MTR_5g087520	94.474	380	2	1	1	361	46	425	0.0	723
MsG0580029498.01.T01	MTR_5g087520	94.474	380	2	1	1	361	45	424	0.0	723
MsG0580029498.01.T01	MTR_6g040240	97.826	46	1	0	57	102	32	77	4.24e-24	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029498.01.T01	AT5G08420	67.919	346	88	3	24	346	29	374	1.02e-150	430

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Find 112 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATCGGCAAAGAAA+TGG	0.426057	5:+97772175	MsG0580029498.01.T01:CDS
AAACAGCGCAAGACCTTGGG+TGG	0.558300	5:-97772267	None:intergenic
AAACCTATCCCAGTTCTCTT+GGG	0.496632	5:-97771781	None:intergenic
AAACCTTAATGTTGTAGACA+GGG	0.617864	5:-97771634	None:intergenic
AAAGAAATGGCAAGAGAGGC+AGG	0.413730	5:+97772188	MsG0580029498.01.T01:CDS
AAAGGAGTATACGGCTTCTT+CGG	0.425543	5:-97771941	None:intergenic
AAATAGTACAACAACAAATT+TGG	0.266566	5:-97772904	None:intergenic
AAATCCTCCCTCAAAGAATT+CGG	0.425871	5:+97769416	MsG0580029498.01.T01:CDS
AAATGCCGAGACATACATTA+TGG	0.250103	5:+97772639	MsG0580029498.01.T01:CDS
AAATTTGGTGGGTAACTCTG+AGG	0.713774	5:+97772393	MsG0580029498.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGCCAAAGAGTTTAT+TGG	-	Chr5:97771110-97771129	None:intergenic	30.0%
AAAAGAAATCGGCAAAGAAA+TGG	+	Chr5:97772175-97772194	MsG0580029498.01.T01:CDS	30.0%
AAACCTTAATGTTGTAGACA+GGG	-	Chr5:97771637-97771656	None:intergenic	30.0%
AACATAAGCTCTCATCATAA+AGG	-	Chr5:97769922-97769941	None:intergenic	30.0%
AAGTCACCCATATAAATACT+TGG	-	Chr5:97770223-97770242	None:intergenic	30.0%
ACCATGTCCAAGTATTTATA+TGG	+	Chr5:97770213-97770232	MsG0580029498.01.T01:intron	30.0%
AGAGTCAACTAAAATAAGAG+AGG	-	Chr5:97770401-97770420	None:intergenic	30.0%
AGCAAGAATGCTGAATAAAA+AGG	-	Chr5:97771126-97771145	None:intergenic	30.0%
ATAACATTTCCAACTACAAG+TGG	+	Chr5:97767836-97767855	MsG0580029498.01.T01:intron	30.0%
ATACAATACACCAATAGCAT+GGG	+	Chr5:97768797-97768816	MsG0580029498.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	97767676	97773016	97767676	ID=MsG0580029498.01;Name=MsG0580029498.01
Chr5	mRNA	97767676	97773016	97767676	ID=MsG0580029498.01.T01;Parent=MsG0580029498.01;Name=MsG0580029498.01.T01;_AED=0.41;_eAED=0.41;_QI=103\|0.9\|1\|1\|0.9\|0.81\|11\|305\|361
Chr5	exon	97767676	97767764	97767676	ID=MsG0580029498.01.T01:exon:25259;Parent=MsG0580029498.01.T01
Chr5	exon	97769183	97769460	97769183	ID=MsG0580029498.01.T01:exon:25260;Parent=MsG0580029498.01.T01
Chr5	exon	97769555	97769665	97769555	ID=MsG0580029498.01.T01:exon:25261;Parent=MsG0580029498.01.T01
Chr5	exon	97770312	97770380	97770312	ID=MsG0580029498.01.T01:exon:25262;Parent=MsG0580029498.01.T01
Chr5	exon	97771411	97771449	97771411	ID=MsG0580029498.01.T01:exon:25263;Parent=MsG0580029498.01.T01
Chr5	exon	97771548	97771652	97771548	ID=MsG0580029498.01.T01:exon:25264;Parent=MsG0580029498.01.T01
Chr5	exon	97771738	97771820	97771738	ID=MsG0580029498.01.T01:exon:25265;Parent=MsG0580029498.01.T01
Chr5	exon	97771907	97771988	97771907	ID=MsG0580029498.01.T01:exon:25266;Parent=MsG0580029498.01.T01
Chr5	exon	97772132	97772275	97772132	ID=MsG0580029498.01.T01:exon:25267;Parent=MsG0580029498.01.T01
Chr5	exon	97772385	97772456	97772385	ID=MsG0580029498.01.T01:exon:25268;Parent=MsG0580029498.01.T01
Chr5	exon	97772595	97773016	97772595	ID=MsG0580029498.01.T01:exon:25269;Parent=MsG0580029498.01.T01
Chr5	five_prime_UTR	97767676	97767764	97767676	ID=MsG0580029498.01.T01:five_prime_utr;Parent=MsG0580029498.01.T01
Chr5	five_prime_UTR	97769183	97769196	97769183	ID=MsG0580029498.01.T01:five_prime_utr;Parent=MsG0580029498.01.T01
Chr5	CDS	97769197	97769460	97769197	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97769555	97769665	97769555	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97770312	97770380	97770312	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97771411	97771449	97771411	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97771548	97771652	97771548	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97771738	97771820	97771738	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97771907	97771988	97771907	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97772132	97772275	97772132	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97772385	97772456	97772385	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	CDS	97772595	97772711	97772595	ID=MsG0580029498.01.T01:cds;Parent=MsG0580029498.01.T01
Chr5	three_prime_UTR	97772712	97773016	97772712	ID=MsG0580029498.01.T01:three_prime_utr;Parent=MsG0580029498.01.T01

Gene Sequence

>MsG0580029498.01.T01

ATGGACGAGAATGACGTATCAAACGAAGTAGTGAAAGGGAAGAAGAAAGGGAAGCACGATAAACCAAAACCATGGGATGACGATCCTAACATCGACCACTGGAAGGTTGAGAAATTCGATCCATCATGGAACGAAAGTGGAATGCTTGAAGTCAGTTCCTTCTCCACCCTGTTTCCTCAATATCGTGAAAAATATCTTCAAGAAGCTTGGCCACTTGTTAAATCCTCCCTCAAAGAATTCGGTATCTCTGCTGAACTCAACTTGGTTGAGGGTTCAATGACTGTTTCAACAACCAGAAAGACTAAGGATCCTTATATTATTGTTAAAGCTAGGGATCTTATCAGACTTCTTTCTCGAAGTGTTCCTGCTCCACAGGCAATAAAAGTACTTGATGATGAAATGCAATGCGACATCATTAAAATTAGTGGGTTGGTTCGCAACAAGGCTCTTGAAATACTCACAGGTTGTTACATTCTCGTCCAGGGAAACACGGTTTCTGTAATGGGTTCATACAAAGGTTTGAAGCAAGTTAGAAGGATTGTTGAGGAATGCATGCTGAATAAAATGCACCCTGTCTACAACATTAAGATTCTTATGATGAAGAAGGAACTTGAAAAAGATCCCGCACTTGCCCAAGAGAACTGGGATAGGTTTCTCCCAAAGTTTAACAAGAAAAATGTAAAGCAAAAGAAGGTTAACGCTAAACCGAAGAAGCCGTATACTCCTTTCCCTCCTCCTCAACAGCCTAGCAAGGTTGATATACAATTAGAAACTGGGGAGTACTTTTTGAGTGACAAAAAGAAATCGGCAAAGAAATGGCAAGAGAGGCAGGCGCAGCAGGCAGAAAAAACTGCTGAAAACAAAAGAAAACGAGACGAGTCCTTTGTCCCACCCAAGGAACCTGCAAATTTGGTGGGTAACTCTGAGGATGCTAGTAATAATGTAGCTGAAATGGCAATGTCCTTGAAGGAAAAAGCTAGGAAGTTTGGCAAGCGCAAATCTGAAGAAAATATAAATGCCGAGACATACATTATGGGGTCATCAGAACAACCATCAAAAAAGAAATCTAAGAAGCAAAAGTCTTAG

Protein sequence

>MsG0580029498.01.T01

MDENDVSNEVVKGKKKGKHDKPKPWDDDPNIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECMLNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPPPQQPSKVDIQLETGEYFLSDKKKSAKKWQERQAQQAEKTAENKRKRDESFVPPKEPANLVGNSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMGSSEQPSKKKSKKQKS*