AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022363.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022363.01.T01 MTR_4g088595 90.110 273 2 1 61 333 1 248 1.89e-173 481
MsG0480022363.01.T01 MTR_7g053160 87.179 273 10 1 61 333 1 248 8.14e-168 467
MsG0480022363.01.T01 MTR_2g014030 87.179 273 10 1 61 333 1 248 1.01e-167 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022363.01.T01 AT5G10360 82.847 274 20 2 61 332 1 249 3.96e-156 437
MsG0480022363.01.T01 AT4G31700 82.545 275 21 2 61 333 1 250 9.05e-149 419
MsG0480022363.01.T01 AT4G31700 80.282 213 15 2 123 333 1 188 3.52e-102 298
MsG0480022363.01.T01 AT5G10360 93.277 119 8 0 61 179 1 119 4.28e-79 240
MsG0480022363.01.T01 AT5G10360 82.222 90 14 1 245 332 108 197 2.50e-36 130

Find 110 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTGCAGCCGTGCTTTC+TGG 0.027256 4:-71607221 MsG0480022363.01.T01:intron
TTATCAATTTGATGTTATTT+TGG 0.155467 4:-71605322 MsG0480022363.01.T01:three_prime_UTR
TTGCTCTCTGCAGGAGTTTA+AGG 0.158668 4:-71607071 MsG0480022363.01.T01:intron
GTTGAACAGCTTACGGATTT+TGG 0.198177 4:+71606225 None:intergenic
CAATTCTTGCTCGCTTCCTT+TGG 0.278075 4:+71605690 None:intergenic
GTGACCAATCGTTGTATCTT+TGG 0.296066 4:+71605725 None:intergenic
GGAAGTTCTTGGTGATGCTT+TGG 0.339745 4:-71607181 MsG0480022363.01.T01:CDS
TGAGATTTCATTTGAATTGA+AGG 0.342708 4:-71605364 MsG0480022363.01.T01:three_prime_UTR
GTTTGCTTAGCGATTGTTTA+GGG 0.350565 4:-71610706 None:intergenic
ATATTGCAGCCGTGCTTTCT+GGG 0.350681 4:-71607220 MsG0480022363.01.T01:intron
TTCCCTCTGCTCCTTCAATC+TGG 0.366847 4:+71605601 None:intergenic
TGTTTGCTTAGCGATTGTTT+AGG 0.367550 4:-71610707 None:intergenic
CTCTTAGGACCTCTCATCCT+TGG 0.367925 4:+71606253 None:intergenic
CACTTTATTTATAGATGGAT+TGG 0.374590 4:-71610546 MsG0480022363.01.T01:intron
AAAGGTGATAATGATCTTCC+AGG 0.375447 4:-71606295 MsG0480022363.01.T01:CDS
GACGCAATGGAGAGCGTAGA+AGG 0.381140 4:-71606381 MsG0480022363.01.T01:CDS
GTCAACACTCCCTGCTTCAT+TGG 0.384872 4:+71607004 None:intergenic
TGTTGACCCCTGGCCGTGTT+AGG 0.390290 4:-71606988 MsG0480022363.01.T01:CDS
TGCTCTCTGCAGGAGTTTAA+GGG 0.392051 4:-71607070 MsG0480022363.01.T01:intron
AGGATCTCACAGGAAGTTCT+TGG 0.420484 4:-71607192 MsG0480022363.01.T01:CDS
GAAGTTCTTGGTGATGCTTT+GGG 0.420593 4:-71607180 MsG0480022363.01.T01:CDS
ACTCCTTGCTTCCAGATTGA+AGG 0.422012 4:-71605612 MsG0480022363.01.T01:CDS
TGGCTTAGCACTGGATAGTC+TGG 0.428627 4:+71605547 None:intergenic
ACACCCTGCTCCACACATCT+TGG 0.430446 4:+71610629 None:intergenic
AATTGAGCGTCGCCTCTTGT+TGG 0.430521 4:+71610458 None:intergenic
TTCTTGCTCGCTTCCTTTGG+AGG 0.436168 4:+71605693 None:intergenic
CGCTTCCTTTGGAGGGTCAA+AGG 0.448439 4:+71605701 None:intergenic
TCAACACTCCCTGCTTCATT+GGG 0.455023 4:+71607005 None:intergenic
CTGACATCCAGTGGTTGGAT+TGG 0.459762 4:+71607910 None:intergenic
TTGTTTGATTGCAGGGAAGA+AGG 0.460053 4:-71605759 MsG0480022363.01.T01:intron
AAAACGGCACTTCTTTCAAA+CGG 0.461686 4:+71605869 None:intergenic
TTGACAGGTTGAACAGCTTA+CGG 0.462619 4:+71606218 None:intergenic
CTTAGCGATTGTTTAGGGAT+AGG 0.462827 4:-71610701 None:intergenic
AGCAAGAGCCTAACACGGCC+AGG 0.463109 4:+71606980 None:intergenic
AAATGATCCGGCACATAAAG+AGG 0.467034 4:+71610507 None:intergenic
AAACGGCACTTCTTTCAAAC+GGG 0.470874 4:+71605870 None:intergenic
CTGAACTGATTAAAATGATC+CGG 0.474076 4:+71610495 None:intergenic
GGTTCCAAGATGTGTGGAGC+AGG 0.474488 4:-71610633 MsG0480022363.01.T01:CDS
ACAAGGATTCCCAATGAAGC+AGG 0.478682 4:-71607014 MsG0480022363.01.T01:CDS
GCAGCTTACAGCTAGAGATA+TGG 0.481546 4:-71605509 MsG0480022363.01.T01:three_prime_UTR
TTCTTCTGACATCCAGTGGT+TGG 0.481727 4:+71607905 None:intergenic
AAGTTCAAAACAGAGAGGTC+GGG 0.481755 4:+71606331 None:intergenic
GCTGCTTATGCTGTGGCAGA+TGG 0.483327 4:+71605527 None:intergenic
GCACATCATCATCCTTTGAC+AGG 0.490483 4:+71606203 None:intergenic
GCGATTGTTTAGGGATAGGT+TGG 0.494775 4:-71610697 None:intergenic
AACTTGGTTATTGTGAAGAA+AGG 0.498754 4:-71606313 MsG0480022363.01.T01:CDS
AATCAGAAACTTACCATCCT+TGG 0.507683 4:+71606144 None:intergenic
AACGTTGCCAATCCAACCAC+TGG 0.507932 4:-71607917 MsG0480022363.01.T01:CDS
TCTTGCTCGCTTCCTTTGGA+GGG 0.509236 4:+71605694 None:intergenic
TCATTAGTCTTGTTCCATGA+GGG 0.522530 4:-71605461 MsG0480022363.01.T01:three_prime_UTR
CAATAACACCTCGTCTAAGA+AGG 0.524629 4:+71610661 None:intergenic
GCAAGAGCCTAACACGGCCA+GGG 0.526221 4:+71606981 None:intergenic
GGTTATGTCTTCAAGATCAC+TGG 0.529877 4:-71607049 MsG0480022363.01.T01:CDS
AAGCTTCTTCTGACATCCAG+TGG 0.530433 4:+71607901 None:intergenic
ATCGCAAATTGTGAGGAAAA+CGG 0.530719 4:+71605853 None:intergenic
TAGGGATAGGTTGGCTACAA+AGG 0.536979 4:-71610688 MsG0480022363.01.T01:CDS
GTTTATCATTAACACCCTCA+TGG 0.538364 4:+71605447 None:intergenic
TATGTCTTCAAGATCACTGG+TGG 0.541337 4:-71607046 MsG0480022363.01.T01:CDS
TTCATTAGTCTTGTTCCATG+AGG 0.544368 4:-71605462 MsG0480022363.01.T01:three_prime_UTR
AAGCAGGGAGTGTTGACCCC+TGG 0.544754 4:-71606998 MsG0480022363.01.T01:CDS
GATTGTCCTTCAGTGACATC+CGG 0.545722 4:-71605833 MsG0480022363.01.T01:intron
TTCTCAACATCAGTAAGCCC+TGG 0.548857 4:+71606277 None:intergenic
GCCGTGCTTTCTGGGACAAG+AGG 0.553103 4:-71607212 MsG0480022363.01.T01:CDS
GGTCAACCCTCTTTATGTGC+CGG 0.553149 4:-71610514 MsG0480022363.01.T01:CDS
CAAGTTCAAAACAGAGAGGT+CGG 0.553854 4:+71606330 None:intergenic
GGAACGCCGAAGTGAGAGCT+TGG 0.554466 4:-71605582 MsG0480022363.01.T01:CDS
CTTCCGTGTCCACGGAAACA+AGG 0.556351 4:+71606403 None:intergenic
GCAGGAACTCCTTGTTTCCG+TGG 0.557291 4:-71606412 MsG0480022363.01.T01:intron
CAGAAACTTACCATCCTTGG+TGG 0.557776 4:+71606147 None:intergenic
CAAGAAGAAGAGAATTGCTA+AGG 0.559648 4:-71605663 MsG0480022363.01.T01:CDS
TCCTCTTGTCCCAGAAAGCA+CGG 0.564472 4:+71607211 None:intergenic
ACTCCTTGTTTCCGTGGACA+CGG 0.569669 4:-71606406 MsG0480022363.01.T01:CDS
AGCTCCAAAGATACAACGAT+TGG 0.570130 4:-71605729 MsG0480022363.01.T01:CDS
TCACTCCTTTGACCCTCCAA+AGG 0.572684 4:-71605706 MsG0480022363.01.T01:CDS
CGTAGAAGGAAGTCTGTTCG+TGG 0.573391 4:-71606367 MsG0480022363.01.T01:CDS
GCTCCTTCAATCTGGAAGCA+AGG 0.577913 4:+71605609 None:intergenic
CCTTGGTGGTGAAAGTTCTA+CGG 0.579080 4:+71606161 None:intergenic
TTCCAGATTGAAGGAGCAGA+GGG 0.584168 4:-71605603 MsG0480022363.01.T01:CDS
AGAACTTTCACCACCAAGGA+TGG 0.589936 4:-71606157 MsG0480022363.01.T01:intron
CATTGCGTCTTCCGTGTCCA+CGG 0.591891 4:+71606395 None:intergenic
CTGGGACAAGAGGATCTCAC+AGG 0.592723 4:-71607202 MsG0480022363.01.T01:CDS
TAAGCTGTTCAACCTGTCAA+AGG 0.594543 4:-71606215 MsG0480022363.01.T01:CDS
AGTTCAAAACAGAGAGGTCG+GGG 0.595017 4:+71606332 None:intergenic
CGTGGACACGGAAGACGCAA+TGG 0.595810 4:-71606394 MsG0480022363.01.T01:CDS
TTGGTGGTGTTACCAACAAG+AGG 0.596033 4:-71610470 MsG0480022363.01.T01:CDS
TTACTGATGTTGAGAAGCCA+AGG 0.596042 4:-71606270 MsG0480022363.01.T01:CDS
GTTGAGAAGCCAAGGATGAG+AGG 0.601224 4:-71606262 MsG0480022363.01.T01:CDS
TGTGGCAGATGGCTTAGCAC+TGG 0.603451 4:+71605538 None:intergenic
AATGATCCGGCACATAAAGA+GGG 0.607324 4:+71610508 None:intergenic
AAGGTGATAATGATCTTCCA+GGG 0.607328 4:-71606294 MsG0480022363.01.T01:CDS
GTTAGGCTCTTGCTCCATAG+AGG 0.608724 4:-71606971 MsG0480022363.01.T01:intron
AGACGAGGTGTTATTGACGA+TGG 0.609456 4:-71610654 MsG0480022363.01.T01:CDS
TCTTAGCCAAGCTCTCACTT+CGG 0.610174 4:+71605576 None:intergenic
GTGAGAGCTTGGCTAAGAAG+AGG 0.611225 4:-71605571 MsG0480022363.01.T01:CDS
CAAGAGCCTAACACGGCCAG+GGG 0.618346 4:+71606982 None:intergenic
CTTCCAGATTGAAGGAGCAG+AGG 0.620391 4:-71605604 MsG0480022363.01.T01:CDS
ATGTCTTCAAGATCACTGGT+GGG 0.622519 4:-71607045 MsG0480022363.01.T01:CDS
AATTGCTAAGGCAAAATCAG+AGG 0.627856 4:-71605651 MsG0480022363.01.T01:CDS
GGTGGTGAAAGTTCTACGGT+AGG 0.627958 4:+71606165 None:intergenic
AAGGACAATCGCAAATTGTG+AGG 0.634058 4:+71605846 None:intergenic
CAAGGATTCCCAATGAAGCA+GGG 0.635106 4:-71607013 MsG0480022363.01.T01:CDS
ACTGGTGGGTGTGACAAACA+AGG 0.636404 4:-71607031 MsG0480022363.01.T01:CDS
GACGATGGTTCCAAGATGTG+TGG 0.650093 4:-71610639 MsG0480022363.01.T01:CDS
GCTGTAAGCTGCTTATGCTG+TGG 0.655143 4:+71605520 None:intergenic
GTTCCAAGATGTGTGGAGCA+GGG 0.658444 4:-71610632 MsG0480022363.01.T01:intron
CCGTAGAACTTTCACCACCA+AGG 0.691015 4:-71606161 MsG0480022363.01.T01:CDS
TATGGAGCAAGAGCCTAACA+CGG 0.710814 4:+71606975 None:intergenic
TAGATGGATTGGCATCTCAG+CGG 0.720214 4:-71610535 MsG0480022363.01.T01:CDS
TAACCAAGTTCAAAACAGAG+AGG 0.738467 4:+71606326 None:intergenic
AAGGCTAACCTTCTTAGACG+AGG 0.748478 4:-71610669 MsG0480022363.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATCCTTATATTAA+GGG - Chr4:71609911-71609930 MsG0480022363.01.T01:intron 10.0%
!!! AAACTTTAATTTTTTTTTTG+TGG + Chr4:71607681-71607700 None:intergenic 10.0%
!!! AACTTTAATTTTTTTTTTGT+GGG + Chr4:71607680-71607699 None:intergenic 10.0%
!! CTTTATATATCCTTATATTA+AGG - Chr4:71609910-71609929 MsG0480022363.01.T01:intron 15.0%
!! TATAAGGATATATAAAGAAA+TGG + Chr4:71609907-71609926 None:intergenic 15.0%
!!! AAAATATTTTAAAGTGTCTT+GGG + Chr4:71607216-71607235 None:intergenic 15.0%
!!! TAAAATATTTTAAAGTGTCT+TGG + Chr4:71607217-71607236 None:intergenic 15.0%
!!! TCTAAAATTTAAATGCAAAA+AGG + Chr4:71606077-71606096 None:intergenic 15.0%
!!! TCTTACATTGTAATTATTTT+GGG - Chr4:71605432-71605451 MsG0480022363.01.T01:three_prime_UTR 15.0%
!!! TTAGTTTGTTTCAAAATAAT+AGG - Chr4:71605989-71606008 MsG0480022363.01.T01:intron 15.0%
!!! TTATCAATTTGATGTTATTT+TGG - Chr4:71610688-71610707 MsG0480022363.01.T01:CDS 15.0%
!!! TTCTTACATTGTAATTATTT+TGG - Chr4:71605431-71605450 MsG0480022363.01.T01:three_prime_UTR 15.0%
!!! TTTTTTTATTTCATCTCTAT+TGG + Chr4:71607811-71607830 None:intergenic 15.0%
!! AAAAACAAGAGAAACAAAAA+AGG + Chr4:71605789-71605808 None:intergenic 20.0%
!! AAAAAGGATAAATATGATAC+GGG + Chr4:71606061-71606080 None:intergenic 20.0%
!! AAGAATATTACTTTCATTGA+AGG - Chr4:71610071-71610090 MsG0480022363.01.T01:intron 20.0%
!! AAGTCAAAGTTATTTAAACT+TGG + Chr4:71607098-71607117 None:intergenic 20.0%
!! ACATGAGATAAATAGTAAAA+TGG + Chr4:71609207-71609226 None:intergenic 20.0%
!! AGAATGTATATAATTAAACC+TGG - Chr4:71606703-71606722 MsG0480022363.01.T01:intron 20.0%
!! ATGAATGATATCTTTGAATT+TGG - Chr4:71606022-71606041 MsG0480022363.01.T01:intron 20.0%
!! CAAAAAGGATAAATATGATA+CGG + Chr4:71606062-71606081 None:intergenic 20.0%
!! CAGAAAATTGAAAAGAATTT+CGG + Chr4:71608287-71608306 None:intergenic 20.0%
!! TAAATAGATTGAAGATTTGA+AGG + Chr4:71609079-71609098 None:intergenic 20.0%
!! TAGCTTATGAAAATAGTTTA+TGG - Chr4:71608541-71608560 MsG0480022363.01.T01:intron 20.0%
!!! AAATATTTTAAAGTGTCTTG+GGG + Chr4:71607215-71607234 None:intergenic 20.0%
!!! CAATTTTCATTAAAAATAGC+CGG + Chr4:71607292-71607311 None:intergenic 20.0%
!!! TAATATTGTTGTTGTAATCA+GGG + Chr4:71606475-71606494 None:intergenic 20.0%
!!! TATTTTTTCCTAAAAACACA+TGG - Chr4:71607325-71607344 MsG0480022363.01.T01:intron 20.0%
!!! TCATTTGAAGTATTTTTCTT+AGG - Chr4:71608193-71608212 MsG0480022363.01.T01:intron 20.0%
!!! TTAAGTTGTTTATCAAAACA+AGG - Chr4:71608674-71608693 MsG0480022363.01.T01:intron 20.0%
!!! TTAATATTGTTGTTGTAATC+AGG + Chr4:71606476-71606495 None:intergenic 20.0%
!!! TTTTTGTGAAGTTATTTATG+TGG - Chr4:71608737-71608756 MsG0480022363.01.T01:intron 20.0%
! AAAAAAAAATGCTACCTCTA+TGG + Chr4:71609056-71609075 None:intergenic 25.0%
! AAAATTAAAGTTTCCGACAA+AGG - Chr4:71607688-71607707 MsG0480022363.01.T01:intron 25.0%
! AACAATAATCATTGTGATCA+TGG + Chr4:71609475-71609494 None:intergenic 25.0%
! AAGATTATTCTAACTCAAGT+AGG - Chr4:71606854-71606873 MsG0480022363.01.T01:intron 25.0%
! AATCAAAAGAAACGTTTGTA+AGG + Chr4:71606654-71606673 None:intergenic 25.0%
! ACATCCAAAACTATTTAACT+AGG + Chr4:71609369-71609388 None:intergenic 25.0%
! ACGCATACATGTAAAAAAAT+TGG + Chr4:71606258-71606277 None:intergenic 25.0%
! AGAACAAAAATGAATACAAG+TGG + Chr4:71610013-71610032 None:intergenic 25.0%
! AGATTATTCTAACTCAAGTA+GGG - Chr4:71606855-71606874 MsG0480022363.01.T01:intron 25.0%
! CGTTCATAAATTTATAGTAG+TGG - Chr4:71609158-71609177 MsG0480022363.01.T01:intron 25.0%
! CTCTATAAGAATACATATAG+AGG + Chr4:71607502-71607521 None:intergenic 25.0%
! CTCTATATGTATTCTTATAG+AGG - Chr4:71607500-71607519 MsG0480022363.01.T01:intron 25.0%
! CTTAGTATTTCATTATTTGC+AGG - Chr4:71609534-71609553 MsG0480022363.01.T01:intron 25.0%
! GACAATGATTTATTCAACAA+AGG - Chr4:71606972-71606991 MsG0480022363.01.T01:CDS 25.0%
! GCAAATAATGAAATACTAAG+TGG + Chr4:71609534-71609553 None:intergenic 25.0%
! GCTAAAACTATCAACTAATT+AGG + Chr4:71605967-71605986 None:intergenic 25.0%
! GTAATGAATTGTAATCTTAG+TGG - Chr4:71610225-71610244 MsG0480022363.01.T01:intron 25.0%
! GTTATCTCTAATATTACATG+TGG + Chr4:71609289-71609308 None:intergenic 25.0%
! TAACTTCTTAAGTTAAGTGT+TGG + Chr4:71606791-71606810 None:intergenic 25.0%
! TAGGTAATTAGATTATAGTC+TGG + Chr4:71605948-71605967 None:intergenic 25.0%
! TCATAAATTTATAGTAGTGG+AGG - Chr4:71609161-71609180 MsG0480022363.01.T01:intron 25.0%
! TCTTCAATCTATTTACCTTT+CGG - Chr4:71609084-71609103 MsG0480022363.01.T01:intron 25.0%
! TGAGATTTCATTTGAATTGA+AGG - Chr4:71610646-71610665 MsG0480022363.01.T01:CDS 25.0%
! TTACAATGCTCTACAAAATA+AGG + Chr4:71608896-71608915 None:intergenic 25.0%
! TTCATTACAAATGTCTGTAT+TGG + Chr4:71610213-71610232 None:intergenic 25.0%
!! ACTATTTTCATAAGCTATCT+TGG + Chr4:71608538-71608557 None:intergenic 25.0%
!! AGTTCTTTTCATAAAGTTAG+TGG + Chr4:71609337-71609356 None:intergenic 25.0%
!! CACTTTATTTATAGATGGAT+TGG - Chr4:71605464-71605483 MsG0480022363.01.T01:three_prime_UTR 25.0%
!! CATATTTTCCATGTGTTTTT+AGG + Chr4:71607336-71607355 None:intergenic 25.0%
!! CATTGTCATTTATCTGAATT+TGG - Chr4:71608401-71608420 MsG0480022363.01.T01:intron 25.0%
!! CTTTAAAAACTTAGATGCAA+CGG - Chr4:71606343-71606362 MsG0480022363.01.T01:CDS 25.0%
!! TTTGGCACTTTATTTATAGA+TGG - Chr4:71605459-71605478 MsG0480022363.01.T01:three_prime_UTR 25.0%
!!! AATATTTTAAAGTGTCTTGG+GGG + Chr4:71607214-71607233 None:intergenic 25.0%
!!! ACAATATGTTTTGATATGCA+TGG - Chr4:71608369-71608388 MsG0480022363.01.T01:intron 25.0%
!!! ATTTGGTTTGAACTGATATT+TGG - Chr4:71608418-71608437 MsG0480022363.01.T01:intron 25.0%
!!! CATTTTAATCAGTTCAGTTT+TGG - Chr4:71605521-71605540 MsG0480022363.01.T01:exon 25.0%
!!! TAATTTTTTATGCACTTTGC+AGG - Chr4:71609580-71609599 MsG0480022363.01.T01:intron 25.0%
!!! TTAAATAGTTTTGGATGTGT+GGG - Chr4:71609371-71609390 MsG0480022363.01.T01:intron 25.0%
!!! TTTATTTTATCGTGTGTAGT+AGG - Chr4:71608586-71608605 MsG0480022363.01.T01:intron 25.0%
AACTTGGTTATTGTGAAGAA+AGG - Chr4:71609697-71609716 MsG0480022363.01.T01:intron 30.0%
ACAAAAATGAATACAAGTGG+AGG + Chr4:71610010-71610029 None:intergenic 30.0%
ACAGTATACATTGTCTAGAT+TGG - Chr4:71610106-71610125 MsG0480022363.01.T01:intron 30.0%
AGAAATGGTTACAATATTCG+TGG + Chr4:71609892-71609911 None:intergenic 30.0%
AGGAACAACAAGTTATTCAA+AGG - Chr4:71605614-71605633 MsG0480022363.01.T01:CDS 30.0%
AGTATACATTGTCTAGATTG+GGG - Chr4:71610108-71610127 MsG0480022363.01.T01:intron 30.0%
ATATGACTGTAGTGTAAATC+TGG - Chr4:71608337-71608356 MsG0480022363.01.T01:intron 30.0%
ATCCTTATATTAAGGGTAGT+GGG - Chr4:71609918-71609937 MsG0480022363.01.T01:intron 30.0%
CAGTATACATTGTCTAGATT+GGG - Chr4:71610107-71610126 MsG0480022363.01.T01:intron 30.0%
CCAAAACTATTTAACTAGGA+GGG + Chr4:71609365-71609384 None:intergenic 30.0%
CCAACATAGATTTATGAACA+TGG + Chr4:71608243-71608262 None:intergenic 30.0%
CCATGTTCATAAATCTATGT+TGG - Chr4:71608240-71608259 MsG0480022363.01.T01:intron 30.0%
CTGAACTGATTAAAATGATC+CGG + Chr4:71605518-71605537 None:intergenic 30.0%
GAAAATGAAGAGAGAGTAAA+TGG + Chr4:71608166-71608185 None:intergenic 30.0%
GATTATTCTAACTCAAGTAG+GGG - Chr4:71606856-71606875 MsG0480022363.01.T01:intron 30.0%
GTGAACTTGTAGAAATAAGT+TGG + Chr4:71608516-71608535 None:intergenic 30.0%
TATATCATTGATGCACACAA+TGG - Chr4:71606811-71606830 MsG0480022363.01.T01:intron 30.0%
TATATCTCTCGATTGAGATT+AGG + Chr4:71606542-71606561 None:intergenic 30.0%
TATCCTTATATTAAGGGTAG+TGG - Chr4:71609917-71609936 MsG0480022363.01.T01:intron 30.0%
TCCAAAACTATTTAACTAGG+AGG + Chr4:71609366-71609385 None:intergenic 30.0%
TCTCCAATAGTAATACTAAG+AGG + Chr4:71609138-71609157 None:intergenic 30.0%
TTGAAAACAAACCTTCATGT+TGG + Chr4:71607989-71608008 None:intergenic 30.0%
TTGCCTCTTAGTATTACTAT+TGG - Chr4:71609132-71609151 MsG0480022363.01.T01:intron 30.0%
! AAAAAAATTGCGATTTTGCG+CGG + Chr4:71607587-71607606 None:intergenic 30.0%
! GCATATGTAGTTATTTCAGT+AGG - Chr4:71609255-71609274 MsG0480022363.01.T01:intron 30.0%
! GCTCAATTTTACAGGTTATT+TGG - Chr4:71605567-71605586 MsG0480022363.01.T01:CDS 30.0%
! GTGATTTTGCATTGGATTAT+TGG - Chr4:71609225-71609244 MsG0480022363.01.T01:intron 30.0%
! GTTATAGTGGAACAATCTAT+TGG + Chr4:71606448-71606467 None:intergenic 30.0%
! GTTTTGTATCATTCTGAGTA+AGG - Chr4:71607533-71607552 MsG0480022363.01.T01:intron 30.0%
! TATCTCATGTGATTTTGCAT+TGG - Chr4:71609217-71609236 MsG0480022363.01.T01:intron 30.0%
! TGTAAAGTGCTTTGATTTCT+TGG - Chr4:71607158-71607177 MsG0480022363.01.T01:intron 30.0%
! TGTAGAAATAAGTTGGAAAC+AGG + Chr4:71608509-71608528 None:intergenic 30.0%
!! AAATATGTTTTTGCCCTCAA+CGG - Chr4:71607349-71607368 MsG0480022363.01.T01:intron 30.0%
!! CTGTATTGGTACAATTTTAC+CGG + Chr4:71610199-71610218 None:intergenic 30.0%
!! TAGGAAAGACACTTTTGATT+TGG - Chr4:71605866-71605885 MsG0480022363.01.T01:CDS 30.0%
!! TTAAGTCACTCACTTTTATG+TGG - Chr4:71605672-71605691 MsG0480022363.01.T01:CDS 30.0%
!! TTTAATCAGTTCAGTTTTGG+TGG - Chr4:71605524-71605543 MsG0480022363.01.T01:exon 30.0%
!!! AATTGTGTTTGTCGCTTTTT+GGG - Chr4:71606318-71606337 MsG0480022363.01.T01:CDS 30.0%
!!! CTTTTGATTTTTTCCAGACA+AGG - Chr4:71606665-71606684 MsG0480022363.01.T01:intron 30.0%
!!! GTAATTATTTTGGGTCTGTT+TGG - Chr4:71605441-71605460 MsG0480022363.01.T01:three_prime_UTR 30.0%
!!! GTTAAATAGTTTTGGATGTG+TGG - Chr4:71609370-71609389 MsG0480022363.01.T01:intron 30.0%
!!! GTTTTTTTCCTAAAACCACA+TGG + Chr4:71607753-71607772 None:intergenic 30.0%
AAAAAATCCATGCCATAGTG+AGG - Chr4:71609415-71609434 MsG0480022363.01.T01:intron 35.0%
AAAAATCCATGCCATAGTGA+GGG - Chr4:71609416-71609435 MsG0480022363.01.T01:intron 35.0%
AAAACGGCACTTCTTTCAAA+CGG + Chr4:71610144-71610163 None:intergenic 35.0%
AAACAGTTGTCCAAACTACT+AGG - Chr4:71609974-71609993 MsG0480022363.01.T01:intron 35.0%
AACAGTTGTCCAAACTACTA+GGG - Chr4:71609975-71609994 MsG0480022363.01.T01:intron 35.0%
AAGACACCTATAGTTTATCC+TGG - Chr4:71606391-71606410 MsG0480022363.01.T01:CDS 35.0%
AAGATTGCAAATAGATGCAG+TGG - Chr4:71606194-71606213 MsG0480022363.01.T01:CDS 35.0%
AATCAGAAACTTACCATCCT+TGG + Chr4:71609869-71609888 None:intergenic 35.0%
AATTGCTAAGGCAAAATCAG+AGG - Chr4:71610359-71610378 MsG0480022363.01.T01:intron 35.0%
ATAGCATTTACACGAACTCT+AGG - Chr4:71606586-71606605 MsG0480022363.01.T01:intron 35.0%
ATCGCAAATTGTGAGGAAAA+CGG + Chr4:71610160-71610179 None:intergenic 35.0%
ATTATAGTCTGGCATGACTT+AGG + Chr4:71605937-71605956 None:intergenic 35.0%
CAAGAAGAAGAGAATTGCTA+AGG - Chr4:71610347-71610366 MsG0480022363.01.T01:intron 35.0%
CACAAAAGAACTCATTACAG+AGG + Chr4:71606768-71606787 None:intergenic 35.0%
CGAAAAATCAAAACAAACCG+AGG - Chr4:71607445-71607464 MsG0480022363.01.T01:intron 35.0%
CGGATTGAATACAACTGTTA+GGG - Chr4:71607712-71607731 MsG0480022363.01.T01:intron 35.0%
CGTGAAAAAATTCAACCTCT+GGG + Chr4:71607634-71607653 None:intergenic 35.0%
CTAAACAATCCAATCCAAAC+AGG + Chr4:71608446-71608465 None:intergenic 35.0%
GATGAACCAGGATAAACTAT+AGG + Chr4:71606400-71606419 None:intergenic 35.0%
GGATTGAATACAACTGTTAG+GGG - Chr4:71607713-71607732 MsG0480022363.01.T01:intron 35.0%
GGTGAAAAAAACACGAGAAA+GGG - Chr4:71606288-71606307 MsG0480022363.01.T01:CDS 35.0%
GTAACATTTCGAATAAGCCT+CGG + Chr4:71607465-71607484 None:intergenic 35.0%
GTTTATCATTAACACCCTCA+TGG + Chr4:71610566-71610585 None:intergenic 35.0%
TAACCAAGTTCAAAACAGAG+AGG + Chr4:71609687-71609706 None:intergenic 35.0%
TCATGGAAGGAAAAAGTAAC+CGG - Chr4:71607270-71607289 MsG0480022363.01.T01:intron 35.0%
TCCTTATATTAAGGGTAGTG+GGG - Chr4:71609919-71609938 MsG0480022363.01.T01:intron 35.0%
TCGTGAAAAAATTCAACCTC+TGG + Chr4:71607635-71607654 None:intergenic 35.0%
TGGGAAACATGCATATAGTA+TGG - Chr4:71609390-71609409 MsG0480022363.01.T01:intron 35.0%
TGGTGAAAAAAACACGAGAA+AGG - Chr4:71606287-71606306 MsG0480022363.01.T01:CDS 35.0%
TGTCAACAACCTGAAAAACT+GGG + Chr4:71605649-71605668 None:intergenic 35.0%
TTAAAGTTTCCGACAAAGGA+CGG - Chr4:71607692-71607711 MsG0480022363.01.T01:intron 35.0%
TTATAGTCTGGCATGACTTA+GGG + Chr4:71605936-71605955 None:intergenic 35.0%
TTCGTAGTATATACCTTGTC+TGG + Chr4:71606681-71606700 None:intergenic 35.0%
TTGTCAACAACCTGAAAAAC+TGG + Chr4:71605650-71605669 None:intergenic 35.0%
! AAAGGTGATAATGATCTTCC+AGG - Chr4:71609715-71609734 MsG0480022363.01.T01:intron 35.0%
! AAGGTGATAATGATCTTCCA+GGG - Chr4:71609716-71609735 MsG0480022363.01.T01:intron 35.0%
! ACGGATTGAATACAACTGTT+AGG - Chr4:71607711-71607730 MsG0480022363.01.T01:intron 35.0%
! CCCTCCTAGTTAAATAGTTT+TGG - Chr4:71609362-71609381 MsG0480022363.01.T01:intron 35.0%
! CGTATTTTCCATGTGGTTTT+AGG - Chr4:71607742-71607761 MsG0480022363.01.T01:intron 35.0%
! GAGTAAGCTTCTTTTCTACT+TGG - Chr4:71609556-71609575 MsG0480022363.01.T01:intron 35.0%
! GCAAAAACGTATTTTCCATG+TGG - Chr4:71607735-71607754 MsG0480022363.01.T01:intron 35.0%
! TAACTACCGTTTAGTCTTTC+CGG - Chr4:71607376-71607395 MsG0480022363.01.T01:intron 35.0%
! TAATCAGGGTTTGGTTATAG+TGG + Chr4:71606461-71606480 None:intergenic 35.0%
! TTGTTGTTGTAATCAGGGTT+TGG + Chr4:71606470-71606489 None:intergenic 35.0%
!! ACTCACTTTTATGTGGTTGA+AGG - Chr4:71605679-71605698 MsG0480022363.01.T01:CDS 35.0%
!! TCATTAGTCTTGTTCCATGA+GGG - Chr4:71610549-71610568 MsG0480022363.01.T01:intron 35.0%
!! TTCATTAGTCTTGTTCCATG+AGG - Chr4:71610548-71610567 MsG0480022363.01.T01:intron 35.0%
!!! AGACTTTGTTGTTCTTTTCC+TGG - Chr4:71605831-71605850 MsG0480022363.01.T01:intron 35.0%
!!! GAATTGTGTTTGTCGCTTTT+TGG - Chr4:71606317-71606336 MsG0480022363.01.T01:CDS 35.0%
!!! GCTTGTAAACTAGTTTTGAC+CGG + Chr4:71606746-71606765 None:intergenic 35.0%
AAAAAAAAGCCCAAAGTGCG+TGG - Chr4:71607829-71607848 MsG0480022363.01.T01:intron 40.0%
AAAAAAAGCCCAAAGTGCGT+GGG - Chr4:71607830-71607849 MsG0480022363.01.T01:intron 40.0%
AAACGGCACTTCTTTCAAAC+GGG + Chr4:71610143-71610162 None:intergenic 40.0%
AAATGATCCGGCACATAAAG+AGG + Chr4:71605506-71605525 None:intergenic 40.0%
AACATCCACCTCAACTAATG+CGG - Chr4:71606220-71606239 MsG0480022363.01.T01:CDS 40.0%
AACGGAACGTAAAGAGACAA+AGG - Chr4:71606361-71606380 MsG0480022363.01.T01:CDS 40.0%
AAGGACAATCGCAAATTGTG+AGG + Chr4:71610167-71610186 None:intergenic 40.0%
AAGTTCAAAACAGAGAGGTC+GGG + Chr4:71609682-71609701 None:intergenic 40.0%
AATGATCCGGCACATAAAGA+GGG + Chr4:71605505-71605524 None:intergenic 40.0%
ACAGTTGTCCAAACTACTAG+GGG - Chr4:71609976-71609995 MsG0480022363.01.T01:intron 40.0%
ACGGAACGTAAAGAGACAAA+GGG - Chr4:71606362-71606381 MsG0480022363.01.T01:CDS 40.0%
AGCTCCAAAGATACAACGAT+TGG - Chr4:71610281-71610300 MsG0480022363.01.T01:intron 40.0%
ATCACCATTGATGCTTTGTC+AGG + Chr4:71607410-71607429 None:intergenic 40.0%
ATGAAAACTGAAGGGAAGAG+TGG + Chr4:71605714-71605733 None:intergenic 40.0%
ATGTCTTCAAGATCACTGGT+GGG - Chr4:71608965-71608984 MsG0480022363.01.T01:intron 40.0%
CAAGTTCAAAACAGAGAGGT+CGG + Chr4:71609683-71609702 None:intergenic 40.0%
CAATAACACCTCGTCTAAGA+AGG + Chr4:71605352-71605371 None:intergenic 40.0%
CACCAACCATGAAAACTGAA+GGG + Chr4:71605722-71605741 None:intergenic 40.0%
CATGTATGCGTGTATTGTGA+TGG - Chr4:71606267-71606286 MsG0480022363.01.T01:CDS 40.0%
CTTAGTCCGTTTACCATACT+GGG - Chr4:71605743-71605762 MsG0480022363.01.T01:CDS 40.0%
GGTTATGTCTTCAAGATCAC+TGG - Chr4:71608961-71608980 MsG0480022363.01.T01:intron 40.0%
GTATTCAATCCGTCCTTTGT+CGG + Chr4:71607704-71607723 None:intergenic 40.0%
GTGACCAATCGTTGTATCTT+TGG + Chr4:71610288-71610307 None:intergenic 40.0%
GTTCCTTTCCATTTCTCACA+CGG + Chr4:71605600-71605619 None:intergenic 40.0%
TAAAGTTAGTGGAGACGTTG+AGG + Chr4:71609326-71609345 None:intergenic 40.0%
TAAGCTGTTCAACCTGTCAA+AGG - Chr4:71609795-71609814 MsG0480022363.01.T01:intron 40.0%
TATAGTCTGGCATGACTTAG+GGG + Chr4:71605935-71605954 None:intergenic 40.0%
TATGTCTTCAAGATCACTGG+TGG - Chr4:71608964-71608983 MsG0480022363.01.T01:intron 40.0%
TCTCTCGATTGAGATTAGGA+AGG + Chr4:71606538-71606557 None:intergenic 40.0%
TTACTGATGTTGAGAAGCCA+AGG - Chr4:71609740-71609759 MsG0480022363.01.T01:intron 40.0%
TTCCTAGCATAAGATGTACC+AGG + Chr4:71605852-71605871 None:intergenic 40.0%
TTCCTGGTACATCTTATGCT+AGG - Chr4:71605847-71605866 MsG0480022363.01.T01:CDS 40.0%
TTGAGATTAGGAAGGCCTTT+AGG + Chr4:71606530-71606549 None:intergenic 40.0%
TTGTTTGATTGCAGGGAAGA+AGG - Chr4:71610251-71610270 MsG0480022363.01.T01:intron 40.0%
TTTACAGAAAGTCAGAGCTC+TGG + Chr4:71607144-71607163 None:intergenic 40.0%
! AAGGTAGGGTTTTACACACT+GGG + Chr4:71607904-71607923 None:intergenic 40.0%
! AATGGTGATTTTGCGCGTTT+TGG - Chr4:71607421-71607440 MsG0480022363.01.T01:intron 40.0%
! ACTCCTTCCTCTTTTCTGTT+TGG + Chr4:71607872-71607891 None:intergenic 40.0%
! ACTCTTCCCTTCAGTTTTCA+TGG - Chr4:71605713-71605732 MsG0480022363.01.T01:CDS 40.0%
! ACTGATATTTGGAGCCTGTT+TGG - Chr4:71608429-71608448 MsG0480022363.01.T01:intron 40.0%
! AGTGTCTTGGGGGATTTTAT+AGG + Chr4:71607204-71607223 None:intergenic 40.0%
! AGTTCCTGACAAAGCATCAA+TGG - Chr4:71607403-71607422 MsG0480022363.01.T01:intron 40.0%
! ATATTAGCCTATGCCCAGTA+TGG + Chr4:71605759-71605778 None:intergenic 40.0%
! ATTTTACCGGATGTCACTGA+AGG + Chr4:71610186-71610205 None:intergenic 40.0%
! CAAAGAATGCCCAGTTTTTC+AGG - Chr4:71605637-71605656 MsG0480022363.01.T01:CDS 40.0%
! CCTTATATTAAGGGTAGTGG+GGG - Chr4:71609920-71609939 MsG0480022363.01.T01:intron 40.0%
! CTCCTTCCTCTTTTCTGTTT+GGG + Chr4:71607871-71607890 None:intergenic 40.0%
! GAACAATCTATTGGAAGTGC+AGG + Chr4:71606439-71606458 None:intergenic 40.0%
! GTGTCTTGGGGGATTTTATA+GGG + Chr4:71607203-71607222 None:intergenic 40.0%
! GTTGAACAGCTTACGGATTT+TGG + Chr4:71609788-71609807 None:intergenic 40.0%
! TATTTGGAGCCTGTTTGGAT+TGG - Chr4:71608434-71608453 MsG0480022363.01.T01:intron 40.0%
! TGCAGGTAATCTAGAGTTGT+GGG + Chr4:71606422-71606441 None:intergenic 40.0%
! TTCCCTTCAGTTTTCATGGT+TGG - Chr4:71605717-71605736 MsG0480022363.01.T01:CDS 40.0%
! TTGACAGGTTGAACAGCTTA+CGG + Chr4:71609795-71609814 None:intergenic 40.0%
!! AGTGGTTGTTGTTTGATTGC+AGG - Chr4:71610243-71610262 MsG0480022363.01.T01:intron 40.0%
!! GAAGTTCTTGGTGATGCTTT+GGG - Chr4:71608830-71608849 MsG0480022363.01.T01:intron 40.0%
!! GTGGTTGTTGTTTGATTGCA+GGG - Chr4:71610244-71610263 MsG0480022363.01.T01:intron 40.0%
AAGCTTCTTCTGACATCCAG+TGG + Chr4:71608112-71608131 None:intergenic 45.0%
AAGGCTAACCTTCTTAGACG+AGG - Chr4:71605341-71605360 MsG0480022363.01.T01:three_prime_UTR 45.0%
ACAAGGATTCCCAATGAAGC+AGG - Chr4:71608996-71609015 MsG0480022363.01.T01:intron 45.0%
ACATCCACCTCAACTAATGC+GGG - Chr4:71606221-71606240 MsG0480022363.01.T01:CDS 45.0%
ACGGTAGTTAACTACCGTTG+AGG + Chr4:71607366-71607385 None:intergenic 45.0%
ACTCCTTGCTTCCAGATTGA+AGG - Chr4:71610398-71610417 MsG0480022363.01.T01:intron 45.0%
AGAACTTTCACCACCAAGGA+TGG - Chr4:71609853-71609872 MsG0480022363.01.T01:intron 45.0%
AGCCCAAACAGAAAAGAGGA+AGG - Chr4:71607866-71607885 MsG0480022363.01.T01:intron 45.0%
AGGACGAGATTCCAACATGA+AGG - Chr4:71607975-71607994 MsG0480022363.01.T01:intron 45.0%
AGGATCTCACAGGAAGTTCT+TGG - Chr4:71608818-71608837 MsG0480022363.01.T01:intron 45.0%
AGTTCAAAACAGAGAGGTCG+GGG + Chr4:71609681-71609700 None:intergenic 45.0%
ATAGTCTGGCATGACTTAGG+GGG + Chr4:71605934-71605953 None:intergenic 45.0%
ATATTGCAGCCGTGCTTTCT+GGG - Chr4:71608790-71608809 MsG0480022363.01.T01:intron 45.0%
ATTTCCCTGCCTCAACCTAA+AGG - Chr4:71606512-71606531 MsG0480022363.01.T01:intron 45.0%
CAACCGTGTGAGAAATGGAA+AGG - Chr4:71605594-71605613 MsG0480022363.01.T01:CDS 45.0%
CAAGGATTCCCAATGAAGCA+GGG - Chr4:71608997-71609016 MsG0480022363.01.T01:intron 45.0%
CAATTCTTGCTCGCTTCCTT+TGG + Chr4:71610323-71610342 None:intergenic 45.0%
CAGAAACTTACCATCCTTGG+TGG + Chr4:71609866-71609885 None:intergenic 45.0%
CAGCAACAATGGAGAAGGTA+GGG + Chr4:71607918-71607937 None:intergenic 45.0%
CCACCAACCATGAAAACTGA+AGG + Chr4:71605723-71605742 None:intergenic 45.0%
CCCCCACTACCCTTAATATA+AGG + Chr4:71609923-71609942 None:intergenic 45.0%
CCTATGCCCAGTATGGTAAA+CGG + Chr4:71605752-71605771 None:intergenic 45.0%
CGGAACGTAAAGAGACAAAG+GGG - Chr4:71606363-71606382 MsG0480022363.01.T01:CDS 45.0%
CGGTAGTTAACTACCGTTGA+GGG + Chr4:71607365-71607384 None:intergenic 45.0%
CTATGAAGCCCCTAGTAGTT+TGG + Chr4:71609987-71610006 None:intergenic 45.0%
GATTGTCCTTCAGTGACATC+CGG - Chr4:71610177-71610196 MsG0480022363.01.T01:intron 45.0%
GCAACATACAGTATGCCGAA+AGG + Chr4:71609102-71609121 None:intergenic 45.0%
GCACATCATCATCCTTTGAC+AGG + Chr4:71609810-71609829 None:intergenic 45.0%
GCAGCTTACAGCTAGAGATA+TGG - Chr4:71610501-71610520 MsG0480022363.01.T01:CDS 45.0%
GCTTAGTCCGTTTACCATAC+TGG - Chr4:71605742-71605761 MsG0480022363.01.T01:CDS 45.0%
GTGAGTATGCTTGAGTGTCA+TGG + Chr4:71607047-71607066 None:intergenic 45.0%
GTTTGCAACCGTGTGAGAAA+TGG - Chr4:71605589-71605608 MsG0480022363.01.T01:CDS 45.0%
TATATTGCAGCCGTGCTTTC+TGG - Chr4:71608789-71608808 MsG0480022363.01.T01:intron 45.0%
TATGGAGCAAGAGCCTAACA+CGG + Chr4:71609038-71609057 None:intergenic 45.0%
TCAACACTCCCTGCTTCATT+GGG + Chr4:71609008-71609027 None:intergenic 45.0%
TCAGCAACAATGGAGAAGGT+AGG + Chr4:71607919-71607938 None:intergenic 45.0%
TCTTAGCCAAGCTCTCACTT+CGG + Chr4:71610437-71610456 None:intergenic 45.0%
TGCTCTCTGCAGGAGTTTAA+GGG - Chr4:71608940-71608959 MsG0480022363.01.T01:intron 45.0%
TTCCAGATTGAAGGAGCAGA+GGG - Chr4:71610407-71610426 MsG0480022363.01.T01:intron 45.0%
TTCTCAACATCAGTAAGCCC+TGG + Chr4:71609736-71609755 None:intergenic 45.0%
TTCTTCTGACATCCAGTGGT+TGG + Chr4:71608108-71608127 None:intergenic 45.0%
TTGCTCTCTGCAGGAGTTTA+AGG - Chr4:71608939-71608958 MsG0480022363.01.T01:intron 45.0%
! AATTGCGATTTTGCGCGGTT+CGG + Chr4:71607582-71607601 None:intergenic 45.0%
! AGTTTCTCGAGCGTTGTGTT+CGG + Chr4:71607251-71607270 None:intergenic 45.0%
! CCTTCAGTTTTCATGGTTGG+TGG - Chr4:71605720-71605739 MsG0480022363.01.T01:CDS 45.0%
! CGGATTTTGGATGCTCTCTT+AGG + Chr4:71609775-71609794 None:intergenic 45.0%
! GAAGGTAGGGTTTTACACAC+TGG + Chr4:71607905-71607924 None:intergenic 45.0%
! GTGCAGGTAATCTAGAGTTG+TGG + Chr4:71606423-71606442 None:intergenic 45.0%
! GTTGTGATTTTGCTCTCTGC+AGG - Chr4:71608930-71608949 MsG0480022363.01.T01:intron 45.0%
! TAGGGATAGGTTGGCTACAA+AGG - Chr4:71605322-71605341 MsG0480022363.01.T01:three_prime_UTR 45.0%
! TTCCTCTTTTCTGTTTGGGC+TGG + Chr4:71607867-71607886 None:intergenic 45.0%
!! AAAGTCAGAGCTCTGGACTA+AGG + Chr4:71607137-71607156 None:intergenic 45.0%
!! AGACGAGGTGTTATTGACGA+TGG - Chr4:71605356-71605375 MsG0480022363.01.T01:three_prime_UTR 45.0%
!! CCTTGGTGGTGAAAGTTCTA+CGG + Chr4:71609852-71609871 None:intergenic 45.0%
!! CGACCTCTCTGTTTTGAACT+TGG - Chr4:71609681-71609700 MsG0480022363.01.T01:intron 45.0%
!! GGAAGTTCTTGGTGATGCTT+TGG - Chr4:71608829-71608848 MsG0480022363.01.T01:intron 45.0%
!! TAGATGGATTGGCATCTCAG+CGG - Chr4:71605475-71605494 MsG0480022363.01.T01:three_prime_UTR 45.0%
!! TTAGGAAGGCCTTTAGGTTG+AGG + Chr4:71606524-71606543 None:intergenic 45.0%
!! TTGGTGGTGTTACCAACAAG+AGG - Chr4:71605540-71605559 MsG0480022363.01.T01:CDS 45.0%
AACCCAAACCCACGCACTTT+GGG + Chr4:71607841-71607860 None:intergenic 50.0%
AACGTTGCCAATCCAACCAC+TGG - Chr4:71608093-71608112 MsG0480022363.01.T01:intron 50.0%
ACGCTCGAGAAACTCATGGA+AGG - Chr4:71607257-71607276 MsG0480022363.01.T01:intron 50.0%
AGGTTGAGGCAGGGAAATCT+AGG + Chr4:71606510-71606529 None:intergenic 50.0%
ATCATGGACAGCCCTACCTT+AGG + Chr4:71609459-71609478 None:intergenic 50.0%
CACAACGCTCGAGAAACTCA+TGG - Chr4:71607253-71607272 MsG0480022363.01.T01:intron 50.0%
CCGTAGAACTTTCACCACCA+AGG - Chr4:71609849-71609868 MsG0480022363.01.T01:intron 50.0%
CCGTTTACCATACTGGGCAT+AGG - Chr4:71605749-71605768 MsG0480022363.01.T01:intron 50.0%
CGTAGAAGGAAGTCTGTTCG+TGG - Chr4:71609643-71609662 MsG0480022363.01.T01:intron 50.0%
CTAGAGTTGTGGGATGAACC+AGG + Chr4:71606412-71606431 None:intergenic 50.0%
CTCTTAGGACCTCTCATCCT+TGG + Chr4:71609760-71609779 None:intergenic 50.0%
CTGACATCCAGTGGTTGGAT+TGG + Chr4:71608103-71608122 None:intergenic 50.0%
CTGCAGCCGGAAAGACTAAA+CGG + Chr4:71607385-71607404 None:intergenic 50.0%
CTTCCAGATTGAAGGAGCAG+AGG - Chr4:71610406-71610425 MsG0480022363.01.T01:intron 50.0%
GACGATGGTTCCAAGATGTG+TGG - Chr4:71605371-71605390 MsG0480022363.01.T01:three_prime_UTR 50.0%
GCTCCTTCAATCTGGAAGCA+AGG + Chr4:71610404-71610423 None:intergenic 50.0%
GCTGTAAGCTGCTTATGCTG+TGG + Chr4:71610493-71610512 None:intergenic 50.0%
GGCTTCAGCAACAATGGAGA+AGG + Chr4:71607923-71607942 None:intergenic 50.0%
GGTCAACCCTCTTTATGTGC+CGG - Chr4:71605496-71605515 MsG0480022363.01.T01:three_prime_UTR 50.0%
GGTGGTGAAAGTTCTACGGT+AGG + Chr4:71609848-71609867 None:intergenic 50.0%
GTCAACACTCCCTGCTTCAT+TGG + Chr4:71609009-71609028 None:intergenic 50.0%
GTCCAGCCCAAACAGAAAAG+AGG - Chr4:71607862-71607881 MsG0480022363.01.T01:intron 50.0%
GTGAGAGCTTGGCTAAGAAG+AGG - Chr4:71610439-71610458 MsG0480022363.01.T01:intron 50.0%
GTTAGGCTCTTGCTCCATAG+AGG - Chr4:71609039-71609058 MsG0480022363.01.T01:intron 50.0%
GTTCCAAGATGTGTGGAGCA+GGG - Chr4:71605378-71605397 MsG0480022363.01.T01:three_prime_UTR 50.0%
GTTGAGAAGCCAAGGATGAG+AGG - Chr4:71609748-71609767 MsG0480022363.01.T01:intron 50.0%
TAACCCAAACCCACGCACTT+TGG + Chr4:71607842-71607861 None:intergenic 50.0%
TACGCAACCCGCATTAGTTG+AGG + Chr4:71606231-71606250 None:intergenic 50.0%
TCACTCCTTTGACCCTCCAA+AGG - Chr4:71610304-71610323 MsG0480022363.01.T01:intron 50.0%
TCATGGACAGCCCTACCTTA+GGG + Chr4:71609458-71609477 None:intergenic 50.0%
TCCTCTTGTCCCAGAAAGCA+CGG + Chr4:71608802-71608821 None:intergenic 50.0%
TCTTGCTCGCTTCCTTTGGA+GGG + Chr4:71610319-71610338 None:intergenic 50.0%
TTCCCTCTGCTCCTTCAATC+TGG + Chr4:71610412-71610431 None:intergenic 50.0%
TTCTTGCTCGCTTCCTTTGG+AGG + Chr4:71610320-71610339 None:intergenic 50.0%
! AATTGAGCGTCGCCTCTTGT+TGG + Chr4:71605555-71605574 None:intergenic 50.0%
! ACTCCTTGTTTCCGTGGACA+CGG - Chr4:71609604-71609623 MsG0480022363.01.T01:intron 50.0%
! ACTGGTGGGTGTGACAAACA+AGG - Chr4:71608979-71608998 MsG0480022363.01.T01:intron 50.0%
! GAGGCGACGCTCAATTTTAC+AGG - Chr4:71605559-71605578 MsG0480022363.01.T01:CDS 50.0%
! TGGCTTAGCACTGGATAGTC+TGG + Chr4:71610466-71610485 None:intergenic 50.0%
!! AAGGCCTTTAGGTTGAGGCA+GGG + Chr4:71606519-71606538 None:intergenic 50.0%
!!! CAACCTCTGGGTCACTTTTC+TGG + Chr4:71607622-71607641 None:intergenic 50.0%
AAGCCCAAAGTGCGTGGGTT+TGG - Chr4:71607835-71607854 MsG0480022363.01.T01:intron 55.0%
ACACCCTGCTCCACACATCT+TGG + Chr4:71605384-71605403 None:intergenic 55.0%
AGCCCAAAGTGCGTGGGTTT+GGG - Chr4:71607836-71607855 MsG0480022363.01.T01:intron 55.0%
CATGGACAGCCCTACCTTAG+GGG + Chr4:71609457-71609476 None:intergenic 55.0%
CATTGCGTCTTCCGTGTCCA+CGG + Chr4:71609618-71609637 None:intergenic 55.0%
CGCACACAAGAGAGTTTCCG+CGG - Chr4:71607942-71607961 MsG0480022363.01.T01:intron 55.0%
CGCGGAAACTCTCTTGTGTG+CGG + Chr4:71607944-71607963 None:intergenic 55.0%
CGTCCAGAAAAGTGACCCAG+AGG - Chr4:71607616-71607635 MsG0480022363.01.T01:intron 55.0%
CTGGGACAAGAGGATCTCAC+AGG - Chr4:71608808-71608827 MsG0480022363.01.T01:intron 55.0%
CTTCCGTGTCCACGGAAACA+AGG + Chr4:71609610-71609629 None:intergenic 55.0%
GCAACCCGCATTAGTTGAGG+TGG + Chr4:71606228-71606247 None:intergenic 55.0%
GCAGTAGCATACTCACGACC+AGG + Chr4:71606724-71606743 None:intergenic 55.0%
GCTGCTTATGCTGTGGCAGA+TGG + Chr4:71610486-71610505 None:intergenic 55.0%
GCTTTGTCAGGAACTGCAGC+CGG + Chr4:71607398-71607417 None:intergenic 55.0%
GGTCGTGAGTATGCTACTGC+CGG - Chr4:71606724-71606743 MsG0480022363.01.T01:intron 55.0%
GGTTCCAAGATGTGTGGAGC+AGG - Chr4:71605377-71605396 MsG0480022363.01.T01:three_prime_UTR 55.0%
GTGTGCGGCTTCAGCAACAA+TGG + Chr4:71607929-71607948 None:intergenic 55.0%
TGTGGCAGATGGCTTAGCAC+TGG + Chr4:71610475-71610494 None:intergenic 55.0%
! CGCTTCCTTTGGAGGGTCAA+AGG + Chr4:71610312-71610331 None:intergenic 55.0%
! GACGCAATGGAGAGCGTAGA+AGG - Chr4:71609629-71609648 MsG0480022363.01.T01:intron 55.0%
! GCAGGAACTCCTTGTTTCCG+TGG - Chr4:71609598-71609617 MsG0480022363.01.T01:intron 55.0%
!! GAAGGCCTTTAGGTTGAGGC+AGG + Chr4:71606520-71606539 None:intergenic 55.0%
AGCAAGAGCCTAACACGGCC+AGG + Chr4:71609033-71609052 None:intergenic 60.0%
CAAGAGCCTAACACGGCCAG+GGG + Chr4:71609031-71609050 None:intergenic 60.0%
CACAAGAGAGTTTCCGCGGC+TGG - Chr4:71607946-71607965 MsG0480022363.01.T01:intron 60.0%
CCATGCCATAGTGAGGGCCA+AGG - Chr4:71609422-71609441 MsG0480022363.01.T01:intron 60.0%
CCCACACCTCCCCTAAGGTA+GGG - Chr4:71609445-71609464 MsG0480022363.01.T01:intron 60.0%
CCTTGGCCCTCACTATGGCA+TGG + Chr4:71609425-71609444 None:intergenic 60.0%
CGTGGACACGGAAGACGCAA+TGG - Chr4:71609616-71609635 MsG0480022363.01.T01:intron 60.0%
GCAAGAGCCTAACACGGCCA+GGG + Chr4:71609032-71609051 None:intergenic 60.0%
GGAACGCCGAAGTGAGAGCT+TGG - Chr4:71610428-71610447 MsG0480022363.01.T01:intron 60.0%
GTTTCCGCGGCTGGATCAAG+AGG - Chr4:71607955-71607974 MsG0480022363.01.T01:intron 60.0%
TCGTCCTCTTGATCCAGCCG+CGG + Chr4:71607962-71607981 None:intergenic 60.0%
TGTTGACCCCTGGCCGTGTT+AGG - Chr4:71609022-71609041 MsG0480022363.01.T01:intron 60.0%
! CACTTTTCTGGACGCGCGCT+TGG + Chr4:71607610-71607629 None:intergenic 60.0%
! CCCTACCTTAGGGGAGGTGT+GGG + Chr4:71609448-71609467 None:intergenic 60.0%
!! AAGCAGGGAGTGTTGACCCC+TGG - Chr4:71609012-71609031 MsG0480022363.01.T01:intron 60.0%
!! GCCGTGCTTTCTGGGACAAG+AGG - Chr4:71608798-71608817 MsG0480022363.01.T01:intron 60.0%
CAAGGCCCACACCTCCCCTA+AGG - Chr4:71609440-71609459 MsG0480022363.01.T01:intron 65.0%
GCCCACACCTCCCCTAAGGT+AGG - Chr4:71609444-71609463 MsG0480022363.01.T01:intron 65.0%
GCCCTACCTTAGGGGAGGTG+TGG + Chr4:71609449-71609468 None:intergenic 65.0%
GGACAGCCCTACCTTAGGGG+AGG + Chr4:71609454-71609473 None:intergenic 65.0%
GTGGGCCTTGGCCCTCACTA+TGG + Chr4:71609430-71609449 None:intergenic 65.0%
! CTTAGGGGAGGTGTGGGCCT+TGG + Chr4:71609442-71609461 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 71605317 71610715 71605317 ID=MsG0480022363.01;Name=MsG0480022363.01
Chr4 mRNA 71605317 71610715 71605317 ID=MsG0480022363.01.T01;Parent=MsG0480022363.01;Name=MsG0480022363.01.T01;_AED=0.33;_eAED=0.37;_QI=0|0.42|0.62|1|1|1|8|215|333
Chr4 exon 71605317 71605767 71605317 ID=MsG0480022363.01.T01:exon:4885;Parent=MsG0480022363.01.T01
Chr4 exon 71605834 71605908 71605834 ID=MsG0480022363.01.T01:exon:4884;Parent=MsG0480022363.01.T01
Chr4 exon 71606158 71606430 71606158 ID=MsG0480022363.01.T01:exon:4883;Parent=MsG0480022363.01.T01
Chr4 exon 71606972 71607080 71606972 ID=MsG0480022363.01.T01:exon:4882;Parent=MsG0480022363.01.T01
Chr4 exon 71607176 71607233 71607176 ID=MsG0480022363.01.T01:exon:4881;Parent=MsG0480022363.01.T01
Chr4 exon 71607878 71607942 71607878 ID=MsG0480022363.01.T01:exon:4880;Parent=MsG0480022363.01.T01
Chr4 exon 71610452 71610554 71610452 ID=MsG0480022363.01.T01:exon:4879;Parent=MsG0480022363.01.T01
Chr4 exon 71610633 71610715 71610633 ID=MsG0480022363.01.T01:exon:4878;Parent=MsG0480022363.01.T01
Chr4 CDS 71610633 71610715 71610633 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 CDS 71610452 71610554 71610452 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 CDS 71607878 71607942 71607878 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 CDS 71607176 71607233 71607176 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 CDS 71606972 71607080 71606972 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 CDS 71606158 71606430 71606158 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 CDS 71605834 71605908 71605834 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 CDS 71605532 71605767 71605532 ID=MsG0480022363.01.T01:cds;Parent=MsG0480022363.01.T01
Chr4 three_prime_UTR 71605317 71605531 71605317 ID=MsG0480022363.01.T01:three_prime_utr;Parent=MsG0480022363.01.T01
Gene Sequence

>MsG0480022363.01.T01

TTGTTTAGGGATAGGTTGGCTACAAAGGCTAACCTTCTTAGACGAGGTGTTATTGACGATGGTTCCAAGATGTGTGGAGCAGGATGGATTGGCATCTCAGCGGTCAACCCTCTTTATGTGCCGGATCATTTTAATCAGTTCAGTTTTGGTGGTGTTACCAACAAGAGGCGACGCTCAATTTTACAGTTTAACGTTGCCAATCCAACCACTGGATGTCAGAAGAAGCTTGAAATCGATGATGACATGAAGCTCCGTGCTTTCTGGGACAAGAGGATCTCACAGGAAGTTCTTGGTGATGCTTTGGGAGAAGAGTTTAAGGGTTATGTCTTCAAGATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGCCGTGTTAGGCTCTTGCTCCATAGAGGAACTCCTTGTTTCCGTGGACACGGAAGACGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGATGCATTGTCAGCCCCGACCTCTCTGTTTTGAACTTGGTTATTGTGAAGAAAGGTGATAATGATCTTCCAGGGCTTACTGATGTTGAGAAGCCAAGGATGAGAGGTCCTAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCAAAGGATGATGATGTGCGAAAATATGTTAACACCTACCGTAGAACTTTCACCACCAAGGATGATTGGGGTTTAGAGTACCCGTTTGAAAGAAGTGCCGTTTTCCTCACAATTTGCGATTGTCCTTCAGTGACATCCGGGAAGAAGGTTAGCAAAGCTCCAAAGATACAACGATTGGTCACTCCTTTGACCCTCCAAAGGAAGCGAGCAAGAATTGCAGACAAGAAGAAGAGAATTGCTAAGGCAAAATCAGAGGCAGCAGATTATCAGAAACTCCTTGCTTCCAGATTGAAGGAGCAGAGGGAACGCCGAAGTGAGAGCTTGGCTAAGAAGAGGTCCAGACTATCCAGTGCTAAGCCATCTGCCACAGCATAA

Protein sequence

>MsG0480022363.01.T01

LFRDRLATKANLLRRGVIDDGSKMCGAGWIGISAVNPLYVPDHFNQFSFGGVTNKRRRSILQFNVANPTTGCQKKLEIDDDMKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKDDWGLEYPFERSAVFLTICDCPSVTSGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRERRSESLAKKRSRLSSAKPSATA*