AlfalfaGEDB | MsG0580029531.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029531.01

KEGG: -
GO: -
PFAM: PF01575

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029531.01.T01	XP_003617106.1	86.667	165	3	2	1	147	1	164	3.26E-94	279

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029531.01.T01	O32472	38.889	108	44	3	51	138	29	134	3.24E-16	73.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029531.01.T01	G7K300	86.667	165	3	2	1	147	1	164	1.56e-94	279

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000139.01	MsG0580029531.01	0.829604	4.691275e-55	4.824796e-52
MsG0180001153.01	MsG0580029531.01	0.803365	3.609732e-49	1.810493e-46
MsG0180003651.01	MsG0580029531.01	0.805929	1.052946e-49	5.641411e-47
MsG0180005659.01	MsG0580029531.01	0.806760	7.035141e-50	3.849973e-47
MsG0280011387.01	MsG0580029531.01	0.824468	7.942952e-54	7.041169e-51
MsG0380016126.01	MsG0580029531.01	0.810143	1.334685e-50	7.983076e-48
MsG0480021037.01	MsG0580029531.01	0.809372	1.955328e-50	1.146040e-47
MsG0580024544.01	MsG0580029531.01	0.828224	1.012477e-54	1.000133e-51
MsG0580029531.01	MsG0780037093.01	0.809530	1.808308e-50	1.064308e-47

Showing 1 to 9 of 9 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029531.01.T01	MTR_5g087960	86.667	165	3	2	1	147	1	164	3.95e-98	279
MsG0580029531.01.T01	MTR_5g087980	73.171	41	11	0	34	74	18	58	1.75e-13	65.1

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029531.01.T01	AT5G60335	51.020	147	52	3	15	141	12	158	1.44e-44	144
MsG0580029531.01.T01	AT5G60335	51.020	147	52	3	15	141	12	158	1.44e-44	144
MsG0580029531.01.T01	AT5G60335	51.020	147	52	3	15	141	12	158	1.44e-44	144

Showing 1 to 3 of 3 entries

Previous1Next

Find 38 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCTTGACTATAGAGCAG+TGG	0.656459	5:+98205745	MsG0580029531.01.T01:CDS
AACTTCAGTATCTAAGTCTG+AGG	0.645534	5:+98203327	MsG0580029531.01.T01:CDS
AAGACAAGATGCTTCAAGAA+TGG	0.472461	5:+98205680	MsG0580029531.01.T01:CDS
ACAAATTGCCACGAAACTAA+AGG	0.552719	5:-98206004	None:intergenic
ACACTAAATAATGAAACATG+AGG	0.638542	5:-98205824	None:intergenic
ACTCCTCATGTACTTAAACC+TGG	0.600357	5:+98203365	MsG0580029531.01.T01:CDS
ACTGCTCTATAGTCAAGGGT+TGG	0.652806	5:-98205743	None:intergenic
ACTTCGAGCAGCAGCCGAAT+CGG	0.492615	5:-98203474	None:intergenic
ATAATTAGAGAACATACTAA+TGG	0.476766	5:-98206062	None:intergenic
ATCTGATCTCCGATATAGAC+TGG	0.540031	5:-98205511	None:intergenic

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGATGAGATGATATG+CGG	-	Chr5:98203551-98203570	None:intergenic	30.0%
AATGAAACAGATCCATTTCA+GGG	+	Chr5:98203746-98203765	MsG0580029531.01.T01:intron	30.0%
AATTACAAAGTACACTTACG+TGG	-	Chr5:98204662-98204681	None:intergenic	30.0%
AGTTATTCCCATAGTATTGT+TGG	-	Chr5:98205149-98205168	None:intergenic	30.0%
GACTGGTAACTTAAAATTCA+AGG	-	Chr5:98205497-98205516	None:intergenic	30.0%
TAGCATAAACACTTACCATA+TGG	-	Chr5:98204015-98204034	None:intergenic	30.0%
TATGCAAAGGATTAGAATCA+TGG	-	Chr5:98203454-98203473	None:intergenic	30.0%
TATTGAAGGATGAAGTGAAA+AGG	+	Chr5:98204254-98204273	MsG0580029531.01.T01:intron	30.0%
TGAATCTCAGAATCAAATCT+AGG	-	Chr5:98204159-98204178	None:intergenic	30.0%
TTCAAAAAAATGCACAAGAC+AGG	-	Chr5:98205603-98205622	None:intergenic	30.0%

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	98203296	98206117	98203296	ID=MsG0580029531.01;Name=MsG0580029531.01
Chr5	mRNA	98203296	98206117	98203296	ID=MsG0580029531.01.T01;Parent=MsG0580029531.01;Name=MsG0580029531.01.T01;_AED=0.44;_eAED=0.44;_QI=0\|0.5\|0.66\|1\|1\|1\|3\|342\|147
Chr5	exon	98203296	98203517	98203296	ID=MsG0580029531.01.T01:exon:25556;Parent=MsG0580029531.01.T01
Chr5	exon	98205469	98205584	98205469	ID=MsG0580029531.01.T01:exon:25557;Parent=MsG0580029531.01.T01
Chr5	exon	98205670	98206117	98205670	ID=MsG0580029531.01.T01:exon:25558;Parent=MsG0580029531.01.T01
Chr5	CDS	98203296	98203517	98203296	ID=MsG0580029531.01.T01:cds;Parent=MsG0580029531.01.T01
Chr5	CDS	98205469	98205584	98205469	ID=MsG0580029531.01.T01:cds;Parent=MsG0580029531.01.T01
Chr5	CDS	98205670	98205775	98205670	ID=MsG0580029531.01.T01:cds;Parent=MsG0580029531.01.T01
Chr5	three_prime_UTR	98205776	98206117	98205776	ID=MsG0580029531.01.T01:three_prime_utr;Parent=MsG0580029531.01.T01

Gene Sequence

>MsG0580029531.01.T01

ATGCTCCTCAGGAGTTTACATTCTAGTAGCAAACTTCAGTATCTAAGTCTGAGGTGTTTTTCATCTACAACTCCTCATGTACTTAAACCTGGTGATGTTTTGAAAAAAACAAGGGTTTTTACCGAGGAAGATGTTCTTCAGTACTCCAAAGTGAGCCATGATTCTAATCCTTTGCATACCGATTCGGCTGCTGCTCGAAGTGTTGGATTTGATGGTCCATTGCCTGCAGCTGTGTATGTATCTCAAACCTTGAATTTTAAGTTACCAGTCTATATCGGAGATCAGATTGTTGGTGAAGTACAAGCAACTAATCTACGAGAAAACAAAAATCGATATTTTGCGAAGTTTAAGACAAGATGCTTCAAGAATGGAGACATTCTTGTCGTTGAAGGTGAAGCATTGGCTTTGTTACCAACCCTTGACTATAGAGCAGTGGAAGTATAA

Protein sequence

>MsG0580029531.01.T01

MLLRSLHSSSKLQYLSLRCFSSTTPHVLKPGDVLKKTRVFTEEDVLQYSKVSHDSNPLHTDSAAARSVGFDGPLPAAVYVSQTLNFKLPVYIGDQIVGEVQATNLRENKNRYFAKFKTRCFKNGDILVVEGEALALLPTLDYRAVEV*