AlfalfaGEDB | MsG0280011387.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011387.01

KEGG: K14831
GO: -
PFAM: PF01778 PF04874

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011387.01.T01	XP_003597878.1	88.796	357	16	1	1	357	1	333	0	645

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011387.01.T01	Q9UTE6	49.751	201	77	1	1	201	1	177	6.09E-61	201

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011387.01.T01	Q2HUC0	88.796	357	16	1	1	357	1	333	0.0	645

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048197.01	MsG0280011387.01	0.806396	8.393864e-50	4.550974e-47
MsG0080048618.01	MsG0280011387.01	0.816958	4.227875e-52	3.039020e-49
MsG0080048784.01	MsG0280011387.01	0.829194	5.900727e-55	5.996613e-52
MsG0080048817.01	MsG0280011387.01	0.852731	3.809375e-61	8.035689e-58
MsG0080048856.01	MsG0280011387.01	0.821019	5.043470e-53	4.056013e-50
MsG0080048968.01	MsG0280011387.01	0.833721	4.531106e-56	5.262298e-53
MsG0080049148.01	MsG0280011387.01	0.844060	9.549590e-59	1.523707e-55
MsG0180000139.01	MsG0280011387.01	0.897272	1.650685e-76	1.850502e-72
MsG0180000152.01	MsG0280011387.01	0.842805	2.066219e-58	3.168729e-55
MsG0180000335.01	MsG0280011387.01	0.800077	1.706501e-48	7.873544e-46

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PPI

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Gene1	Gene2	Type
MsG0280011387.01	MsG0880042050.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011387.01.T01	MTR_2g103560	88.796	357	16	1	1	357	1	333	0.0	645
MsG0280011387.01.T01	MTR_4g079190	60.388	361	59	7	1	356	1	282	1.11e-122	355
MsG0280011387.01.T01	MTR_1g048860	93.289	149	10	0	151	299	2	150	6.70e-74	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011387.01.T01	AT1G23280	53.008	266	67	4	1	264	1	210	3.67e-80	247

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Find 84 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAAGCACGTAATCAG+AGG	0.629054	2:+83373434	MsG0280011387.01.T01:CDS
AAAGTAGGATTGAGATGCTC+TGG	0.480020	2:-83374343	None:intergenic
AAATTCCAGTGACATTGTAA+GGG	0.584410	2:-83369497	None:intergenic
AACAAATAATAACACTACCA+AGG	0.623666	2:+83371873	MsG0280011387.01.T01:CDS
AACAGCGGCTGCTATAGAGA+AGG	0.646322	2:+83371937	MsG0280011387.01.T01:CDS
AAGAGAAGTGCGTACTGAAG+TGG	0.528805	2:+83372097	MsG0280011387.01.T01:CDS
AAGTGTAGAATTGATATACT+TGG	0.587597	2:-83368779	None:intergenic
AATCCGCATCTGGGTCATTT+TGG	0.284801	2:-83370303	None:intergenic
AATGATGCCGATCATGAAAA+TGG	0.350819	2:+83372569	MsG0280011387.01.T01:CDS
ACAATTGCAATGTCTGTTGT+AGG	0.508401	2:+83370021	MsG0280011387.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAAGGGAAGTCATAA+GGG	-	Chr2:83373893-83373912	None:intergenic	30.0%
AAAATATGACAAGTAACTGG+AGG	-	Chr2:83373097-83373116	None:intergenic	30.0%
AAATTCCAGTGACATTGTAA+GGG	-	Chr2:83369500-83369519	None:intergenic	30.0%
AAGGTCTGGTAATATACATT+TGG	-	Chr2:83373265-83373284	None:intergenic	30.0%
AAGTTCTTAGAGACTTAACT+TGG	+	Chr2:83372411-83372430	MsG0280011387.01.T01:intron	30.0%
ACAACTCAACCATTTCTTTA+GGG	+	Chr2:83373652-83373671	MsG0280011387.01.T01:intron	30.0%
ACACTGACAACTGTATATAT+AGG	-	Chr2:83373699-83373718	None:intergenic	30.0%
ACATAGTTTAGGGACTAAAT+TGG	+	Chr2:83369358-83369377	MsG0280011387.01.T01:intron	30.0%
ACCTAAAAGATAGTAGATCA+AGG	-	Chr2:83371773-83371792	None:intergenic	30.0%
AGCTTCAAAGAAACTTGAAA+AGG	+	Chr2:83373480-83373499	MsG0280011387.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	83368721	83374499	83368721	ID=MsG0280011387.01;Name=MsG0280011387.01
Chr2	mRNA	83368721	83374499	83368721	ID=MsG0280011387.01.T01;Parent=MsG0280011387.01;Name=MsG0280011387.01.T01;_AED=0.38;_eAED=0.42;_QI=0\|0.77\|0.7\|1\|0.77\|0.7\|10\|354\|357
Chr2	exon	83374101	83374499	83374101	ID=MsG0280011387.01.T01:exon:18896;Parent=MsG0280011387.01.T01
Chr2	exon	83373413	83373546	83373413	ID=MsG0280011387.01.T01:exon:18895;Parent=MsG0280011387.01.T01
Chr2	exon	83372476	83372590	83372476	ID=MsG0280011387.01.T01:exon:18894;Parent=MsG0280011387.01.T01
Chr2	exon	83372223	83372360	83372223	ID=MsG0280011387.01.T01:exon:18893;Parent=MsG0280011387.01.T01
Chr2	exon	83372044	83372136	83372044	ID=MsG0280011387.01.T01:exon:18892;Parent=MsG0280011387.01.T01
Chr2	exon	83371871	83371958	83371871	ID=MsG0280011387.01.T01:exon:18891;Parent=MsG0280011387.01.T01
Chr2	exon	83370257	83370354	83370257	ID=MsG0280011387.01.T01:exon:18890;Parent=MsG0280011387.01.T01
Chr2	exon	83369971	83370161	83369971	ID=MsG0280011387.01.T01:exon:18889;Parent=MsG0280011387.01.T01
Chr2	exon	83369494	83369579	83369494	ID=MsG0280011387.01.T01:exon:18888;Parent=MsG0280011387.01.T01
Chr2	exon	83368721	83368806	83368721	ID=MsG0280011387.01.T01:exon:18887;Parent=MsG0280011387.01.T01
Chr2	CDS	83368721	83368806	83368721	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83369494	83369579	83369494	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83369971	83370161	83369971	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83370257	83370354	83370257	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83371871	83371958	83371871	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83372044	83372136	83372044	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83372223	83372360	83372223	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83372476	83372590	83372476	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83373413	83373546	83373413	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	CDS	83374101	83374145	83374101	ID=MsG0280011387.01.T01:cds;Parent=MsG0280011387.01.T01
Chr2	three_prime_UTR	83374146	83374499	83374146	ID=MsG0280011387.01.T01:three_prime_utr;Parent=MsG0280011387.01.T01

Gene Sequence

>MsG0280011387.01.T01

ATGCAGCACGATGAGGTTATATGGCAAGTTATCAGACACAATCATTGCAGTTTCATGACCAAGTATATCAATTCTACACTTTCCCTAAACCCTTACAATGTCACTGGAATTTGTAACCGAAGCTCTTGCCCTTTAGCTAATAGTCGCTATGCCACCATTCGTGAAGACAAAGTGGAAAATGTAATAAGTGGAGAATTTGTGATAAAGAATGCAAGCAATGATACAATTGCAATGTCTGTTGTAGGAGTTTTTTACCTTTACATGAAGACTATTGAAAGAGCTCATACGCCAAAGGATTTGTGGGAAAGAGTTAAGCTGCCTAGGAATTACGAACAGGCACTTGGAGTCATCGACAAACATCTGATGTATTGGCCAAAGCTTCTCGTACACAAGATAAAACAACGATTGACCAAAATGACCCAGATGCGGATTCGTATGAGGAAACTTGCTTTGAAAACAAGGGAACAAATAATAACACTACCAAGGAAAGAGACAAAGAGAGAATCTAGAAGAGAAGCAAAGGCTCAAACAGCGGCTGCTATAGAGAAGGCTATTGAGCATGAGCTAACTAAACGCCTTGAAGAAGGAGTTTATGCTGATAAAAGAGAAGTGCGTACTGAAGTGGAGATTCAGACTGATAAGCAAATTGAGATGGAGATAGTGGGACGCCTCCAAAATGTAGGTTCGCAACCAGGTGAAATATTCAACTATCCTACTGAAGCGTACTATAAAGTTCTTGATATGGAGAAGCTTCAACCTGCTGATGAAGAGGATGAAGAGGAAGCAGAAGTAGAATATGTAGAAGGTTATGAACTTGAAGAGGAAGATGACATGGAAGATTTTGGTGCGTTTGCAATTCATGAGTCACAGGGCAATGATGCCGATCATGAAAATGCTGGAAGCAGTGAAGACGAAGAAACTGAAGCACGTAATCAGAGGAAAGCCAAAAGGAAAATGACTTTAGCTTCAAAGAAACTTGAAAAGGATGCCCTTGATACTAAATCAAAGAAAACGAAGGTCCTCATTGAGGTGGAACACGACGATGCTTACGAAAGACAAAGATTGGTACAGTAG

Protein sequence

>MsG0280011387.01.T01

MQHDEVIWQVIRHNHCSFMTKYINSTLSLNPYNVTGICNRSSCPLANSRYATIREDKVENVISGEFVIKNASNDTIAMSVVGVFYLYMKTIERAHTPKDLWERVKLPRNYEQALGVIDKHLMYWPKLLVHKIKQRLTKMTQMRIRMRKLALKTREQIITLPRKETKRESRREAKAQTAAAIEKAIEHELTKRLEEGVYADKREVRTEVEIQTDKQIEMEIVGRLQNVGSQPGEIFNYPTEAYYKVLDMEKLQPADEEDEEEAEVEYVEGYELEEEDDMEDFGAFAIHESQGNDADHENAGSSEDEETEARNQRKAKRKMTLASKKLEKDALDTKSKKTKVLIEVEHDDAYERQRLVQ*