AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030130.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030130.01.T01 MTR_5g097870 63.182 220 72 6 1 217 1 214 2.91e-74 236
MsG0580030130.01.T01 MTR_5g097870 48.571 210 33 4 182 323 253 455 4.15e-43 155
MsG0580030130.01.T01 MTR_5g097870 63.182 220 72 6 1 217 1 214 6.23e-74 236
MsG0580030130.01.T01 MTR_5g097870 48.571 210 33 4 182 323 253 455 6.57e-43 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030130.01.T01 AT4G35370 28.884 457 145 15 2 323 3 414 4.15e-37 138
MsG0580030130.01.T01 AT4G18900 29.885 435 166 13 21 321 5 434 2.22e-28 115
MsG0580030130.01.T01 AT4G18905 32.900 231 136 7 1 217 1 226 1.86e-18 86.7
MsG0580030130.01.T01 AT4G18905 45.794 107 46 2 229 323 365 471 2.16e-18 86.3
MsG0580030130.01.T01 AT4G18905 32.900 231 136 7 1 217 1 226 1.91e-18 86.7
MsG0580030130.01.T01 AT4G18905 45.794 107 46 2 229 323 375 481 2.53e-18 86.3

Find 91 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAGATGAAGATTT+AGG 0.118417 5:+107090741 None:intergenic
TGGGACCATCCATTGAAATT+TGG 0.157308 5:-107087073 MsG0580030130.01.T01:CDS
AAGAAGAAGATGAAGATTTA+GGG 0.230024 5:+107090742 None:intergenic
TTAAGAATACCTTAAGTTAA+AGG 0.233613 5:+107083956 None:intergenic
CTCAGAGGACAACCCATTCT+TGG 0.250710 5:-107084028 MsG0580030130.01.T01:CDS
CTTAGGTGCTGCCGTATTAT+AGG 0.264746 5:+107084474 None:intergenic
CTGACAAGCGAGTGAAGATT+TGG 0.281740 5:-107085565 MsG0580030130.01.T01:CDS
ACCCATTCTTGGTTGGCTAT+TGG 0.282254 5:-107084017 MsG0580030130.01.T01:CDS
TTCTTGGCTGTTGGTTCAAT+GGG 0.292446 5:-107087092 MsG0580030130.01.T01:CDS
CTTCTTGGCTGTTGGTTCAA+TGG 0.294754 5:-107087093 MsG0580030130.01.T01:CDS
GGAGTATGATTCTGAAGATA+TGG 0.322833 5:-107087917 MsG0580030130.01.T01:CDS
GGGACCATCCATTGAAATTT+GGG 0.330425 5:-107087072 MsG0580030130.01.T01:CDS
CGGTGCGGCGGTATTGTTGC+CGG 0.335986 5:+107090705 None:intergenic
TATGGTAACAGGGAACTTCT+TGG 0.361380 5:-107087108 MsG0580030130.01.T01:intron
AGCAGATGACCTTTAACTTA+AGG 0.366046 5:-107083965 MsG0580030130.01.T01:CDS
TCTTCAATTTCATCTTTAGA+AGG 0.369876 5:+107090574 None:intergenic
ACAATACCGCCGCACCGTTC+CGG 0.371804 5:-107090699 MsG0580030130.01.T01:five_prime_UTR
TATTTGTAACAGGTAAACTT+TGG 0.385249 5:-107084257 MsG0580030130.01.T01:intron
TCTGCTTTCGAAACCCCTTT+CGG 0.399941 5:+107090616 None:intergenic
CATTCTTGGTTGGCTATTGG+AGG 0.400179 5:-107084014 MsG0580030130.01.T01:CDS
CTCCAATAGCCAACCAAGAA+TGG 0.401097 5:+107084015 None:intergenic
ATTTGTAACAGGTAAACTTT+GGG 0.409359 5:-107084256 MsG0580030130.01.T01:intron
GTGAATGAGTTAAAGATAGA+TGG 0.418081 5:+107089431 None:intergenic
AAGATTTGGGATGTTGTTGC+TGG 0.420460 5:-107085551 MsG0580030130.01.T01:CDS
AATATTATCACTATTTCCAT+TGG 0.425682 5:+107089526 None:intergenic
GGTGCGGCGGTATTGTTGCC+GGG 0.428879 5:+107090706 None:intergenic
CAATTTCGTGGATTCCGAAA+GGG 0.447261 5:-107090630 MsG0580030130.01.T01:CDS
TTAACCGTAGCTGGTGCAAT+TGG 0.448209 5:-107089557 MsG0580030130.01.T01:CDS
ATCCATGTTGAGATCCTTCA+AGG 0.448626 5:+107089496 None:intergenic
TTCTTCTTCTCTCGCGCCCC+CGG 0.450355 5:-107090724 MsG0580030130.01.T01:five_prime_UTR
TCTTTAGATGCAACAGAAGA+TGG 0.451968 5:+107084216 None:intergenic
TAATATTACCGACGCCTTGA+AGG 0.459375 5:-107089510 MsG0580030130.01.T01:CDS
ACAGGGAACTTCTTGGCTGT+TGG 0.465917 5:-107087101 MsG0580030130.01.T01:intron
TTATGATTGCCGCAATTTCG+TGG 0.471697 5:-107090642 MsG0580030130.01.T01:CDS
AGTAGAGCCATGTGTGGTGT+TGG 0.476737 5:-107086954 MsG0580030130.01.T01:CDS
ATCAAGGTCCCAAATTTCAA+TGG 0.478209 5:+107087064 None:intergenic
TTATCACTATTTCCATTGGA+TGG 0.497026 5:+107089530 None:intergenic
TGGCAAAGAGAAAAGGAAAA+GGG 0.501326 5:-107086930 MsG0580030130.01.T01:CDS
TCCAATAGCCAACCAAGAAT+GGG 0.506954 5:+107084016 None:intergenic
AACCGGCAGAGTGCATAGTT+AGG 0.507480 5:+107089405 None:intergenic
TACCTAACTATGCACTCTGC+CGG 0.509196 5:-107089407 MsG0580030130.01.T01:CDS
AATGGATCATCACTCTGATA+AGG 0.510295 5:-107085513 MsG0580030130.01.T01:intron
GTAGAGCCATGTGTGGTGTT+GGG 0.516272 5:-107086953 MsG0580030130.01.T01:CDS
TACCTCTGTATCCTATAATA+CGG 0.517900 5:-107084485 MsG0580030130.01.T01:CDS
GAGTATGATTCTGAAGATAT+GGG 0.518261 5:-107087916 MsG0580030130.01.T01:CDS
TAGATGCAACAGAAGATGGT+TGG 0.521703 5:+107084220 None:intergenic
AATTTCGTGGATTCCGAAAG+GGG 0.523413 5:-107090629 MsG0580030130.01.T01:CDS
TGTTGGGTGGCAAAGAGAAA+AGG 0.525906 5:-107086937 MsG0580030130.01.T01:CDS
TGGAAAGTGTACTATTACAA+TGG 0.526286 5:-107085531 MsG0580030130.01.T01:CDS
TTTATACACTTACAACATCA+AGG 0.526703 5:+107087048 None:intergenic
ATTACGCCACTGGATAAAAC+CGG 0.526925 5:+107089388 None:intergenic
GCACATGCTTTAACCGTAGC+TGG 0.541928 5:-107089566 MsG0580030130.01.T01:CDS
TGACAAGCGAGTGAAGATTT+GGG 0.543098 5:-107085564 MsG0580030130.01.T01:CDS
TACGGTCAGAGTGGTGGTGC+CGG 0.545155 5:+107090680 None:intergenic
GAGGACAACCCATTCTTGGT+TGG 0.549444 5:-107084024 MsG0580030130.01.T01:CDS
TCAATTTCATCTTTAGAAGG+AGG 0.552892 5:+107090577 None:intergenic
GTTGGCTATTGGAGGCTCAA+AGG 0.554681 5:-107084006 MsG0580030130.01.T01:CDS
AGGTCCCAAATTTCAATGGA+TGG 0.555988 5:+107087068 None:intergenic
TCAGAGTGGTGGTGCCGGAA+CGG 0.561104 5:+107090685 None:intergenic
CATGGATAACTATGATGAAG+AGG 0.561882 5:-107089480 MsG0580030130.01.T01:CDS
GTGCGGCGGTATTGTTGCCG+GGG 0.564212 5:+107090707 None:intergenic
GAATGGGTTGTCCTCTGAGA+AGG 0.566271 5:+107084032 None:intergenic
TTTACCAATTGCACCAGCTA+CGG 0.566294 5:+107089553 None:intergenic
TAACTCTGTTGTACACGATA+CGG 0.573513 5:+107090662 None:intergenic
GTGGCAAAGAGAAAAGGAAA+AGG 0.574347 5:-107086931 MsG0580030130.01.T01:CDS
CGCCTTGAAGGATCTCAACA+TGG 0.577123 5:-107089498 MsG0580030130.01.T01:CDS
TTGCCACCCAACACCACACA+TGG 0.587638 5:+107086947 None:intergenic
TTTCGGAATCCACGAAATTG+CGG 0.589319 5:+107090633 None:intergenic
CAAACAACAACAGAATCAGT+TGG 0.589362 5:+107087879 None:intergenic
CTCACAAGTGATTACGCCAC+TGG 0.590916 5:+107089378 None:intergenic
ATGAGTTAAAGATAGATGGA+TGG 0.593736 5:+107089435 None:intergenic
GCAATTGGTAAACCATCCAA+TGG 0.595294 5:-107089542 MsG0580030130.01.T01:CDS
GCAATTTCGTGGATTCCGAA+AGG 0.597881 5:-107090631 MsG0580030130.01.T01:CDS
GGCAAAGAGAAAAGGAAAAG+GGG 0.597934 5:-107086929 MsG0580030130.01.T01:CDS
CAGTCCGAACATCAAAACAT+TGG 0.599001 5:+107084572 None:intergenic
TATGTACCTGGTGAGAGTGT+TGG 0.601691 5:+107090543 None:intergenic
TGTTAGGTGAGTCTTGAAGA+TGG 0.604591 5:-107084601 MsG0580030130.01.T01:intron
TGTTGTTTGTGCGCGTACTG+AGG 0.617359 5:-107087865 MsG0580030130.01.T01:CDS
GTTGAGATCCTTCAAGGCGT+CGG 0.622922 5:+107089502 None:intergenic
AGTAGCATTCTGCACAGATG+TGG 0.625228 5:+107084537 None:intergenic
ATTCTGCACAGATGTGGCAT+TGG 0.628001 5:+107084543 None:intergenic
TCATCTCCAACACTCTCACC+AGG 0.633867 5:-107090549 MsG0580030130.01.T01:intron
TGCGGCGGTATTGTTGCCGG+GGG 0.649703 5:+107090708 None:intergenic
GTGGTGCCGGAACGGTGCGG+CGG 0.654436 5:+107090693 None:intergenic
GAGCCATGTGTGGTGTTGGG+TGG 0.661618 5:-107086950 MsG0580030130.01.T01:CDS
GTGGTGGTGCCGGAACGGTG+CGG 0.676805 5:+107090690 None:intergenic
ACACGATACGGTCAGAGTGG+TGG 0.684721 5:+107090674 None:intergenic
TATGATGAAGAGGATGACAA+AGG 0.685139 5:-107089470 MsG0580030130.01.T01:CDS
TGCCGTATTATAGGATACAG+AGG 0.687331 5:+107084483 None:intergenic
TGTACACGATACGGTCAGAG+TGG 0.702564 5:+107090671 None:intergenic
TTGATGAGTAGAGCCATGTG+TGG 0.777914 5:-107086960 MsG0580030130.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG - Chr5:107090631-107090650 MsG0580030130.01.T01:CDS 0.0%
!!! ATGTAATATATATGTTTTTA+AGG - Chr5:107086782-107086801 MsG0580030130.01.T01:intron 10.0%
!!! TTATTTTTTATTTTTTGTAG+AGG - Chr5:107084844-107084863 MsG0580030130.01.T01:intron 10.0%
!! AAAACTTATAAGATGAAAAT+GGG - Chr5:107084611-107084630 MsG0580030130.01.T01:intron 15.0%
!! AAACAATTTAAATAAGTCAA+GGG + Chr5:107089468-107089487 None:intergenic 15.0%
!! AATAAATAAAAAAACTAACG+AGG + Chr5:107090017-107090036 None:intergenic 15.0%
!! ATAAATAAAAAAACTAACGA+GGG + Chr5:107090016-107090035 None:intergenic 15.0%
!! ATCTTAAAATAGTTTCATTA+TGG - Chr5:107087597-107087616 MsG0580030130.01.T01:intron 15.0%
!! CAATAATAATTAATACAAGA+TGG + Chr5:107085072-107085091 None:intergenic 15.0%
!! TAAAACTTATAAGATGAAAA+TGG - Chr5:107084610-107084629 MsG0580030130.01.T01:intron 15.0%
!! TTTAAATGCTTCATTAATTA+CGG - Chr5:107089307-107089326 MsG0580030130.01.T01:intron 15.0%
!!! AATCAAGTTTTAATACAAAA+TGG + Chr5:107088862-107088881 None:intergenic 15.0%
!!! TAATATATATGTTTTTAAGG+AGG - Chr5:107086785-107086804 MsG0580030130.01.T01:intron 15.0%
!! AAAAAAATCCTTGTTGAATA+GGG + Chr5:107087709-107087728 None:intergenic 20.0%
!! AAATACTAATCAAAATCCAA+AGG + Chr5:107088621-107088640 None:intergenic 20.0%
!! AAATTACATATTCTATACAG+AGG - Chr5:107084743-107084762 MsG0580030130.01.T01:intron 20.0%
!! AAATTCCTGATTATATTCTT+AGG + Chr5:107086022-107086041 None:intergenic 20.0%
!! AATAATTATACAAGAAAACG+AGG + Chr5:107088707-107088726 None:intergenic 20.0%
!! AATATTATCACTATTTCCAT+TGG + Chr5:107085200-107085219 None:intergenic 20.0%
!! AATTACATATTCTATACAGA+GGG - Chr5:107084744-107084763 MsG0580030130.01.T01:intron 20.0%
!! AGTATTATTAAAACATAGAC+AGG + Chr5:107088191-107088210 None:intergenic 20.0%
!! ATAAAGTAAAATTAGTACAC+AGG + Chr5:107089930-107089949 None:intergenic 20.0%
!! ATAACTATTCAATAACACAA+TGG - Chr5:107086134-107086153 MsG0580030130.01.T01:intron 20.0%
!! ATAATTATACAAGAAAACGA+GGG + Chr5:107088706-107088725 None:intergenic 20.0%
!! ATATACTTTAAATAGCTGAA+AGG + Chr5:107086102-107086121 None:intergenic 20.0%
!! CAAACAATTTAAATAAGTCA+AGG + Chr5:107089469-107089488 None:intergenic 20.0%
!! CTGTTTGAAAATTTAAATGT+TGG - Chr5:107087964-107087983 MsG0580030130.01.T01:intron 20.0%
!! TAAATAAAAAAACTAACGAG+GGG + Chr5:107090015-107090034 None:intergenic 20.0%
!! TACAATAGAGATATATAGTA+GGG + Chr5:107090559-107090578 None:intergenic 20.0%
!! TCTGTATAGAATATGTAATT+TGG + Chr5:107084744-107084763 None:intergenic 20.0%
!! TTAAGAATACCTTAAGTTAA+AGG + Chr5:107090770-107090789 None:intergenic 20.0%
!! TTAAGTGTTAAATACAGATT+CGG + Chr5:107085030-107085049 None:intergenic 20.0%
!! TTACAATAGAGATATATAGT+AGG + Chr5:107090560-107090579 None:intergenic 20.0%
!! TTGCAAATTATTAAGAAGAA+AGG + Chr5:107089422-107089441 None:intergenic 20.0%
!!! AATTTCCAATTTTGTTTTCT+TGG - Chr5:107090060-107090079 MsG0580030130.01.T01:intron 20.0%
!!! ATAATTTTGTAACTAACCTT+TGG - Chr5:107088602-107088621 MsG0580030130.01.T01:intron 20.0%
!!! ATTTTTTCTCATGATATATC+AGG - Chr5:107086617-107086636 MsG0580030130.01.T01:intron 20.0%
!!! TCTAACATTTTTCCAAAATT+TGG - Chr5:107088431-107088450 MsG0580030130.01.T01:intron 20.0%
!!! TTATAAGTTTTAATCGCTTA+TGG + Chr5:107084602-107084621 None:intergenic 20.0%
!!! TTGGTATTTTTCTCTTTTAA+GGG - Chr5:107084634-107084653 MsG0580030130.01.T01:intron 20.0%
!!! TTTAACTTAAGGTATTCTTA+AGG - Chr5:107090769-107090788 MsG0580030130.01.T01:five_prime_UTR 20.0%
!!! TTTTTATCAGAGTAATGAAT+TGG - Chr5:107086672-107086691 MsG0580030130.01.T01:intron 20.0%
!!! TTTTTTTTTGGTGTTTGTTA+GGG - Chr5:107090652-107090671 MsG0580030130.01.T01:exon 20.0%
!!! TTTTTTTTTTGGTGTTTGTT+AGG - Chr5:107090651-107090670 MsG0580030130.01.T01:exon 20.0%
! AAAAAAAAAAACGAAGTCGT+CGG + Chr5:107090622-107090641 None:intergenic 25.0%
! AAAGTTCTATATTGTTGACA+AGG - Chr5:107089381-107089400 MsG0580030130.01.T01:intron 25.0%
! AAGAAGAAGATGAAGATTTA+GGG + Chr5:107083984-107084003 None:intergenic 25.0%
! AAGATAATAAGATGATGCAA+AGG + Chr5:107087582-107087601 None:intergenic 25.0%
! AATAAGAAGACTAATACTTG+AGG - Chr5:107087448-107087467 MsG0580030130.01.T01:intron 25.0%
! AATAGTTTCATTATGGTAAC+AGG - Chr5:107087604-107087623 MsG0580030130.01.T01:intron 25.0%
! AATATTGCAAACAAAGTGTA+AGG + Chr5:107089674-107089693 None:intergenic 25.0%
! ACAATAGAGATATATAGTAG+GGG + Chr5:107090558-107090577 None:intergenic 25.0%
! ACTAATTTCAATTATGTACC+TGG + Chr5:107084195-107084214 None:intergenic 25.0%
! AGAATGACTGCAAATTAATA+AGG - Chr5:107084297-107084316 MsG0580030130.01.T01:intron 25.0%
! AGTTTACCTGTTACAAATAA+TGG + Chr5:107090465-107090484 None:intergenic 25.0%
! ATAGTTTCATTATGGTAACA+GGG - Chr5:107087605-107087624 MsG0580030130.01.T01:intron 25.0%
! ATCAACCACCAAAAATTATT+TGG - Chr5:107087854-107087873 MsG0580030130.01.T01:CDS 25.0%
! ATTCCATAAGCTACAATTAA+CGG - Chr5:107086533-107086552 MsG0580030130.01.T01:intron 25.0%
! ATTTGTAACAGGTAAACTTT+GGG - Chr5:107090467-107090486 MsG0580030130.01.T01:intron 25.0%
! ATTTGTCCCCAATATAAAAA+TGG - Chr5:107084803-107084822 MsG0580030130.01.T01:intron 25.0%
! CAAAAAAATCCTTGTTGAAT+AGG + Chr5:107087710-107087729 None:intergenic 25.0%
! CTAAAAGCAACTATTTAAGT+AGG + Chr5:107088410-107088429 None:intergenic 25.0%
! CTAGATTTACTAACAACTAA+TGG - Chr5:107088775-107088794 MsG0580030130.01.T01:intron 25.0%
! GAAATCAACAAAATACAAAG+AGG - Chr5:107088932-107088951 MsG0580030130.01.T01:intron 25.0%
! GCAAATAAAACATTATGTTC+AGG + Chr5:107089054-107089073 None:intergenic 25.0%
! GTATAAATATAAGCAGCATA+AGG + Chr5:107086595-107086614 None:intergenic 25.0%
! GTGAGTAGTCAATAAAATTT+GGG - Chr5:107084562-107084581 MsG0580030130.01.T01:CDS 25.0%
! TAGATCCAAGAAAACAAAAT+TGG + Chr5:107090068-107090087 None:intergenic 25.0%
! TATTTGTAACAGGTAAACTT+TGG - Chr5:107090466-107090485 MsG0580030130.01.T01:intron 25.0%
! TCTTCAATTTCATCTTTAGA+AGG + Chr5:107084152-107084171 None:intergenic 25.0%
! TGTGAGTAGTCAATAAAATT+TGG - Chr5:107084561-107084580 MsG0580030130.01.T01:CDS 25.0%
! TTCTTTGCAAGTAAAATGTA+GGG - Chr5:107087219-107087238 MsG0580030130.01.T01:intron 25.0%
! TTTATACACTTACAACATCA+AGG + Chr5:107087678-107087697 None:intergenic 25.0%
! TTTCTTTGCAAGTAAAATGT+AGG - Chr5:107087218-107087237 MsG0580030130.01.T01:intron 25.0%
!! ACATTTTACTTGCAAAGAAA+TGG + Chr5:107087218-107087237 None:intergenic 25.0%
!! ACATTTTTATCGTTGATGTA+TGG + Chr5:107086700-107086719 None:intergenic 25.0%
!! AGAGGTAACCAAATAATTTT+TGG + Chr5:107087865-107087884 None:intergenic 25.0%
!! ATTTGGTATTATTTCTTGTC+AGG + Chr5:107084727-107084746 None:intergenic 25.0%
!! CAAACAGATTCACTTTAAAA+TGG + Chr5:107089718-107089737 None:intergenic 25.0%
!! GTTGGTATTTTTCTCTTTTA+AGG - Chr5:107084633-107084652 MsG0580030130.01.T01:intron 25.0%
!! TTTGAAGTTTAGCTATCTAA+TGG - Chr5:107089761-107089780 MsG0580030130.01.T01:intron 25.0%
!! TTTGGTATTATTTCTTGTCA+GGG + Chr5:107084726-107084745 None:intergenic 25.0%
!! TTTTTCCAAAATTTGGATTC+TGG - Chr5:107088438-107088457 MsG0580030130.01.T01:intron 25.0%
!! TTTTTGTAGAGGACTAAATT+GGG - Chr5:107084855-107084874 MsG0580030130.01.T01:intron 25.0%
!!! ACATTTTTTTGTACGACTAA+GGG + Chr5:107085848-107085867 None:intergenic 25.0%
!!! AGTCTCTACCATTTTTATAT+TGG + Chr5:107084814-107084833 None:intergenic 25.0%
!!! GTCTCTACCATTTTTATATT+GGG + Chr5:107084813-107084832 None:intergenic 25.0%
!!! TACATTTTTTTGTACGACTA+AGG + Chr5:107085849-107085868 None:intergenic 25.0%
!!! TCTCTACCATTTTTATATTG+GGG + Chr5:107084812-107084831 None:intergenic 25.0%
!!! TGGATTTTGATTAGTATTTG+TGG - Chr5:107088622-107088641 MsG0580030130.01.T01:intron 25.0%
!!! TTTTGTTTTCTTGGATCTAA+AGG - Chr5:107090069-107090088 MsG0580030130.01.T01:intron 25.0%
!!! TTTTTTGTAGAGGACTAAAT+TGG - Chr5:107084854-107084873 MsG0580030130.01.T01:intron 25.0%
!!! TTTTTTTTGGTGTTTGTTAG+GGG - Chr5:107090653-107090672 MsG0580030130.01.T01:exon 25.0%
AAAAATAAACCAATCCGAAC+AGG - Chr5:107084517-107084536 MsG0580030130.01.T01:CDS 30.0%
AAAAGGAAAAGGGGAAAAAT+GGG - Chr5:107087803-107087822 MsG0580030130.01.T01:intron 30.0%
AAAATTATGAAGGACCAAAC+TGG - Chr5:107084885-107084904 MsG0580030130.01.T01:intron 30.0%
AAACGTAAAAGAAATGGATG+AGG + Chr5:107085971-107085990 None:intergenic 30.0%
AAATTATGAAGGACCAAACT+GGG - Chr5:107084886-107084905 MsG0580030130.01.T01:intron 30.0%
AATAGCTGAAAGGTTAATTG+CGG + Chr5:107086092-107086111 None:intergenic 30.0%
AATCCGTTAATTGTAGCTTA+TGG + Chr5:107086539-107086558 None:intergenic 30.0%
ACAATAGAGCAAAATGTACT+TGG + Chr5:107088525-107088544 None:intergenic 30.0%
AGTAAAGAACTCATAGGATT+TGG + Chr5:107087140-107087159 None:intergenic 30.0%
AGTTGTTAGTAAATCTAGCT+TGG + Chr5:107088773-107088792 None:intergenic 30.0%
ATCTTCAATTCATGTTCACA+AGG + Chr5:107086918-107086937 None:intergenic 30.0%
ATGAGTTAAAGATAGATGGA+TGG + Chr5:107085291-107085310 None:intergenic 30.0%
ATTATTGCTTATTGCAGTGT+AGG - Chr5:107085085-107085104 MsG0580030130.01.T01:intron 30.0%
ATTCATAAGGTTTGTAGTGT+TGG + Chr5:107086462-107086481 None:intergenic 30.0%
CAATGATTTATTGTCCTGTT+AGG - Chr5:107090106-107090125 MsG0580030130.01.T01:intron 30.0%
CAATTTAAATAAGTCAAGGG+CGG + Chr5:107089465-107089484 None:intergenic 30.0%
CTTATAAGATGAAAATGGGT+TGG - Chr5:107084615-107084634 MsG0580030130.01.T01:intron 30.0%
GAAAAATTGGATCATTACCA+AGG + Chr5:107089606-107089625 None:intergenic 30.0%
GAAGAAGAAGATGAAGATTT+AGG + Chr5:107083985-107084004 None:intergenic 30.0%
GGAAAAACTAAGATAAACCA+AGG + Chr5:107086574-107086593 None:intergenic 30.0%
GTATCAAGTAAAGAACTCAT+AGG + Chr5:107087146-107087165 None:intergenic 30.0%
GTGAATGAGTTAAAGATAGA+TGG + Chr5:107085295-107085314 None:intergenic 30.0%
GTGTTAATAAACTTTGCAGA+AGG - Chr5:107089789-107089808 MsG0580030130.01.T01:intron 30.0%
TACATGTGTCTATGTAATGT+CGG + Chr5:107085474-107085493 None:intergenic 30.0%
TACCTCTGTATCCTATAATA+CGG - Chr5:107090238-107090257 MsG0580030130.01.T01:intron 30.0%
TACTACACTTACCAAATATG+TGG - Chr5:107085717-107085736 MsG0580030130.01.T01:intron 30.0%
TAGAATATGAATGCACAACT+TGG + Chr5:107085801-107085820 None:intergenic 30.0%
TAGACACATGTAGTTACATT+TGG - Chr5:107085482-107085501 MsG0580030130.01.T01:intron 30.0%
TCTCATGATATATCAGGATT+GGG - Chr5:107086623-107086642 MsG0580030130.01.T01:intron 30.0%
TGAAATACAAGTTCATATCG+CGG + Chr5:107087042-107087061 None:intergenic 30.0%
TGTACTTGGAATTAAGTGAA+TGG + Chr5:107088511-107088530 None:intergenic 30.0%
TGTTGAAGATACATACACTT+AGG + Chr5:107090269-107090288 None:intergenic 30.0%
TTACTGCCATTATTTGTAAC+AGG - Chr5:107090456-107090475 MsG0580030130.01.T01:intron 30.0%
TTATCACTATTTCCATTGGA+TGG + Chr5:107085196-107085215 None:intergenic 30.0%
TTCCTGATTATATTCTTAGG+TGG + Chr5:107086019-107086038 None:intergenic 30.0%
TTCTCATGATATATCAGGAT+TGG - Chr5:107086622-107086641 MsG0580030130.01.T01:intron 30.0%
TTCTTGTCAGGGAATAAATT+AGG + Chr5:107084715-107084734 None:intergenic 30.0%
! AACATGAACTGTCATGTTTT+TGG + Chr5:107087300-107087319 None:intergenic 30.0%
! AAGAAAAAACTGACAGCTTT+TGG + Chr5:107090534-107090553 None:intergenic 30.0%
! AGAATCCAGAATCCAAATTT+TGG + Chr5:107088446-107088465 None:intergenic 30.0%
! ATCCATTTCTTTTACGTTTG+AGG - Chr5:107085972-107085991 MsG0580030130.01.T01:intron 30.0%
! CTGTAATGTTTTATGCAGTT+TGG - Chr5:107087180-107087199 MsG0580030130.01.T01:intron 30.0%
! CTTTACTTGATACTTGTTGA+TGG - Chr5:107087153-107087172 MsG0580030130.01.T01:intron 30.0%
! GAGTATGATTCTGAAGATAT+GGG - Chr5:107086807-107086826 MsG0580030130.01.T01:intron 30.0%
! TACATTTTGCTCTATTGTCA+GGG - Chr5:107088527-107088546 MsG0580030130.01.T01:intron 30.0%
! TCAATTTCATCTTTAGAAGG+AGG + Chr5:107084149-107084168 None:intergenic 30.0%
! TCCAATTTTTCCTTGTTACT+TGG - Chr5:107089615-107089634 MsG0580030130.01.T01:CDS 30.0%
! TCCATTTCTTTTACGTTTGA+GGG - Chr5:107085973-107085992 MsG0580030130.01.T01:intron 30.0%
! TCTGAAACATCGTTATCAAA+TGG + Chr5:107084280-107084299 None:intergenic 30.0%
! TGGAAAGTGTACTATTACAA+TGG - Chr5:107089192-107089211 MsG0580030130.01.T01:intron 30.0%
! TGTATAAAAAGCGTAAACAC+TGG - Chr5:107086056-107086075 MsG0580030130.01.T01:intron 30.0%
! TTTTCTGATCATGAGTTTAC+TGG + Chr5:107085697-107085716 None:intergenic 30.0%
!! AATTAACGGATTATCCAAAC+AGG - Chr5:107086547-107086566 MsG0580030130.01.T01:intron 30.0%
!! ATTAACGGATTATCCAAACA+GGG - Chr5:107086548-107086567 MsG0580030130.01.T01:intron 30.0%
!! ATTTTTCTCTTTTAAGGGAC+TGG - Chr5:107084639-107084658 MsG0580030130.01.T01:intron 30.0%
!! CATTGATCATCTTTGACTTT+TGG - Chr5:107088573-107088592 MsG0580030130.01.T01:intron 30.0%
!! GGAATACAGGTTTGTTAATT+TGG - Chr5:107088994-107089013 MsG0580030130.01.T01:intron 30.0%
!! GGTAACCAAATAATTTTTGG+TGG + Chr5:107087862-107087881 None:intergenic 30.0%
!! TGCTGATTCTGTAATTTGTT+TGG - Chr5:107088904-107088923 MsG0580030130.01.T01:intron 30.0%
!! TGTTTTTCAGTTGCATTAGT+AGG - Chr5:107086240-107086259 MsG0580030130.01.T01:intron 30.0%
AAACCATTAGGCTCCATTTA+GGG + Chr5:107088320-107088339 None:intergenic 35.0%
AAACTTTGCAGAAGGATGTA+AGG - Chr5:107089797-107089816 MsG0580030130.01.T01:intron 35.0%
AAGCTCTTCACTTAAAGTCT+TGG - Chr5:107084957-107084976 MsG0580030130.01.T01:intron 35.0%
AATACCATCCACAAACTAGA+AGG + Chr5:107088485-107088504 None:intergenic 35.0%
AATGGATCATCACTCTGATA+AGG - Chr5:107089210-107089229 MsG0580030130.01.T01:intron 35.0%
ACAAAATCACCGTAATGTGA+GGG - Chr5:107088111-107088130 MsG0580030130.01.T01:intron 35.0%
ACATTACAGCCATCAGAAAA+AGG + Chr5:107085623-107085642 None:intergenic 35.0%
ACTTGGAACCAAATAATGTG+GGG + Chr5:107088047-107088066 None:intergenic 35.0%
AGCTCTTCACTTAAAGTCTT+GGG - Chr5:107084958-107084977 MsG0580030130.01.T01:intron 35.0%
AGGGAACACAAAAACTGTAT+TGG - Chr5:107088130-107088149 MsG0580030130.01.T01:intron 35.0%
AGTAGAAAAGCCAAGTAACA+AGG + Chr5:107089628-107089647 None:intergenic 35.0%
ATACATGAAAAGGATGGCAA+TGG + Chr5:107085006-107085025 None:intergenic 35.0%
ATCAAGGTCCCAAATTTCAA+TGG + Chr5:107087662-107087681 None:intergenic 35.0%
ATGAAACATTGACACTGACA+CGG + Chr5:107084255-107084274 None:intergenic 35.0%
ATTCCGGAATGATGATATCA+TGG + Chr5:107087065-107087084 None:intergenic 35.0%
CAAACAACAACAGAATCAGT+TGG + Chr5:107086847-107086866 None:intergenic 35.0%
CAAATTACAGAATCAGCAAG+AGG + Chr5:107088902-107088921 None:intergenic 35.0%
CAGATTCGGAATACATGAAA+AGG + Chr5:107085016-107085035 None:intergenic 35.0%
CATGGATAACTATGATGAAG+AGG - Chr5:107085243-107085262 MsG0580030130.01.T01:intron 35.0%
CCAAATATGTGGAATCTAAC+TGG - Chr5:107085728-107085747 MsG0580030130.01.T01:intron 35.0%
CCAGTTAGATTCCACATATT+TGG + Chr5:107085731-107085750 None:intergenic 35.0%
CTGTAATGTAATACCAAACC+TGG - Chr5:107085634-107085653 MsG0580030130.01.T01:intron 35.0%
GAAAAGGAAAAGGGGAAAAA+TGG - Chr5:107087802-107087821 MsG0580030130.01.T01:intron 35.0%
GAAATACAAGTTCATATCGC+GGG + Chr5:107087041-107087060 None:intergenic 35.0%
GAACACAAAAACTGTATTGG+AGG - Chr5:107088133-107088152 MsG0580030130.01.T01:intron 35.0%
GACTGGATCTATGGATAAAA+CGG - Chr5:107090367-107090386 MsG0580030130.01.T01:intron 35.0%
GACTTGGAACCAAATAATGT+GGG + Chr5:107088048-107088067 None:intergenic 35.0%
GCCAAGTAACAAGGAAAAAT+TGG + Chr5:107089619-107089638 None:intergenic 35.0%
GTCAAACTCAAAAGATGTCA+AGG + Chr5:107089094-107089113 None:intergenic 35.0%
TAACAAAACCATGCAAGTGT+TGG + Chr5:107086733-107086752 None:intergenic 35.0%
TAACTCTGTTGTACACGATA+CGG + Chr5:107084064-107084083 None:intergenic 35.0%
TACTCCTTCAACTTGAATGT+GGG - Chr5:107088069-107088088 MsG0580030130.01.T01:intron 35.0%
TAGTATGCAGCTACTCAATA+TGG + Chr5:107088359-107088378 None:intergenic 35.0%
TATGATGAAGAGGATGACAA+AGG - Chr5:107085253-107085272 MsG0580030130.01.T01:intron 35.0%
TATTACATGTTTATCTGCCC+TGG - Chr5:107086987-107087006 MsG0580030130.01.T01:intron 35.0%
TCACCATGATATCATCATTC+CGG - Chr5:107087059-107087078 MsG0580030130.01.T01:intron 35.0%
TCCCTCAAACGTAAAAGAAA+TGG + Chr5:107085977-107085996 None:intergenic 35.0%
TCTTTAGATGCAACAGAAGA+TGG + Chr5:107090510-107090529 None:intergenic 35.0%
TGCCACCTAAGAATATAATC+AGG - Chr5:107086014-107086033 MsG0580030130.01.T01:intron 35.0%
TGGCAAAGAGAAAAGGAAAA+GGG - Chr5:107087793-107087812 MsG0580030130.01.T01:intron 35.0%
TTCGGAATACATGAAAAGGA+TGG + Chr5:107085012-107085031 None:intergenic 35.0%
! AAGAGCTTTTGAGCAGAAAA+TGG + Chr5:107084945-107084964 None:intergenic 35.0%
! AGCAGATGACCTTTAACTTA+AGG - Chr5:107090758-107090777 MsG0580030130.01.T01:five_prime_UTR 35.0%
! ATGTGGATTGAAAGACATCA+TGG + Chr5:107089504-107089523 None:intergenic 35.0%
! GGAGTATGATTCTGAAGATA+TGG - Chr5:107086806-107086825 MsG0580030130.01.T01:intron 35.0%
! GGTCCTTCATAATTTTCTTC+TGG + Chr5:107084881-107084900 None:intergenic 35.0%
! GTACATTTTGCTCTATTGTC+AGG - Chr5:107088526-107088545 MsG0580030130.01.T01:intron 35.0%
! GTTAGTAAATCTAGCTTGGA+AGG + Chr5:107088769-107088788 None:intergenic 35.0%
! TAAAAAGCGTAAACACTGGT+AGG - Chr5:107086060-107086079 MsG0580030130.01.T01:intron 35.0%
! TTTTGTGTTCCCTCACATTA+CGG + Chr5:107088123-107088142 None:intergenic 35.0%
!! AAAACCCACATTCAAGTTGA+AGG + Chr5:107088076-107088095 None:intergenic 35.0%
!! AAATTGTGACGGACCATAAT+GGG + Chr5:107084684-107084703 None:intergenic 35.0%
!! CATATCTACCTTCTAGTTTG+TGG - Chr5:107088474-107088493 MsG0580030130.01.T01:intron 35.0%
!! TAAATTGTGACGGACCATAA+TGG + Chr5:107084685-107084704 None:intergenic 35.0%
!!! ACACTTGCATGGTTTTGTTA+AGG - Chr5:107086733-107086752 MsG0580030130.01.T01:intron 35.0%
!!! CGATCCAATGTTTTGATGTT+CGG - Chr5:107090147-107090166 MsG0580030130.01.T01:intron 35.0%
AACCATTAGGCTCCATTTAG+GGG + Chr5:107088319-107088338 None:intergenic 40.0%
AATGTGGGGGAACTCAAAAA+TGG + Chr5:107088033-107088052 None:intergenic 40.0%
AATTTCCACTTTGCACAGCA+TGG - Chr5:107087082-107087101 MsG0580030130.01.T01:CDS 40.0%
AATTTCGTGGATTCCGAAAG+GGG - Chr5:107084094-107084113 MsG0580030130.01.T01:intron 40.0%
ACTGTATTGGAGGAGGATTT+AGG - Chr5:107088143-107088162 MsG0580030130.01.T01:intron 40.0%
AGAAGGAGGTTCAGCAAAAA+CGG + Chr5:107084135-107084154 None:intergenic 40.0%
AGGATTGGGTTATTCAGTTC+GGG - Chr5:107086637-107086656 MsG0580030130.01.T01:intron 40.0%
AGGTCCCAAATTTCAATGGA+TGG + Chr5:107087658-107087677 None:intergenic 40.0%
ATAGATGCCATATGCATGTG+AGG - Chr5:107088655-107088674 MsG0580030130.01.T01:intron 40.0%
ATCCATGTTGAGATCCTTCA+AGG + Chr5:107085230-107085249 None:intergenic 40.0%
ATCTTCAAGACTCACCTAAC+AGG + Chr5:107090123-107090142 None:intergenic 40.0%
ATGTGGGGGAACTCAAAAAT+GGG + Chr5:107088032-107088051 None:intergenic 40.0%
ATTACGCCACTGGATAAAAC+CGG + Chr5:107085338-107085357 None:intergenic 40.0%
CAAACCATTAGGCTCCATTT+AGG + Chr5:107088321-107088340 None:intergenic 40.0%
CAATTTCGTGGATTCCGAAA+GGG - Chr5:107084093-107084112 MsG0580030130.01.T01:intron 40.0%
CACAAAAACTGTATTGGAGG+AGG - Chr5:107088136-107088155 MsG0580030130.01.T01:intron 40.0%
CACAAAATCACCGTAATGTG+AGG - Chr5:107088110-107088129 MsG0580030130.01.T01:intron 40.0%
CAGGATTGGGTTATTCAGTT+CGG - Chr5:107086636-107086655 MsG0580030130.01.T01:intron 40.0%
CAGTCCGAACATCAAAACAT+TGG + Chr5:107090154-107090173 None:intergenic 40.0%
CCCTCACATATTACATCAGA+GGG - Chr5:107084776-107084795 MsG0580030130.01.T01:intron 40.0%
CCCTCTGATGTAATATGTGA+GGG + Chr5:107084779-107084798 None:intergenic 40.0%
CTAAATGGAGCCTAATGGTT+TGG - Chr5:107088319-107088338 MsG0580030130.01.T01:intron 40.0%
CTTGGAACCAAATAATGTGG+GGG + Chr5:107088046-107088065 None:intergenic 40.0%
GATAAGTTCCAACACTTGCA+TGG - Chr5:107086722-107086741 MsG0580030130.01.T01:intron 40.0%
GATCAAACGAACCACTAAGA+AGG + Chr5:107089574-107089593 None:intergenic 40.0%
GCAATTGGTAAACCATCCAA+TGG - Chr5:107085181-107085200 MsG0580030130.01.T01:intron 40.0%
GGAACTCAAAAATGGGGAAA+AGG + Chr5:107088025-107088044 None:intergenic 40.0%
GGATTGAAAGACATCATGGA+AGG + Chr5:107089500-107089519 None:intergenic 40.0%
GGCAAAGAGAAAAGGAAAAG+GGG - Chr5:107087794-107087813 MsG0580030130.01.T01:intron 40.0%
GGGACCATCCATTGAAATTT+GGG - Chr5:107087651-107087670 MsG0580030130.01.T01:intron 40.0%
GGGCCAGAAGAAAATTATGA+AGG - Chr5:107084875-107084894 MsG0580030130.01.T01:intron 40.0%
GTACTCCTTCAACTTGAATG+TGG - Chr5:107088068-107088087 MsG0580030130.01.T01:intron 40.0%
GTGGAATCTAACTGGTAAAG+AGG - Chr5:107085736-107085755 MsG0580030130.01.T01:intron 40.0%
GTGGCAAAGAGAAAAGGAAA+AGG - Chr5:107087792-107087811 MsG0580030130.01.T01:intron 40.0%
GTTGGTCGTCTATAACTGTT+GGG - Chr5:107087982-107088001 MsG0580030130.01.T01:intron 40.0%
GTTTATGAGTTCAGCTACCT+TGG - Chr5:107085584-107085603 MsG0580030130.01.T01:CDS 40.0%
GTTTGATCATACTGTTGCCT+TGG - Chr5:107089586-107089605 MsG0580030130.01.T01:CDS 40.0%
TAAAGTCTTGGGTGAAGAGA+TGG - Chr5:107084969-107084988 MsG0580030130.01.T01:intron 40.0%
TAATATTACCGACGCCTTGA+AGG - Chr5:107085213-107085232 MsG0580030130.01.T01:intron 40.0%
TAATCACTTGTGAGGCTGTT+TGG - Chr5:107085354-107085373 MsG0580030130.01.T01:intron 40.0%
TAGATGCAACAGAAGATGGT+TGG + Chr5:107090506-107090525 None:intergenic 40.0%
TAGATGCCATATGCATGTGA+GGG - Chr5:107088656-107088675 MsG0580030130.01.T01:intron 40.0%
TATGGTAACAGGGAACTTCT+TGG - Chr5:107087615-107087634 MsG0580030130.01.T01:intron 40.0%
TATGTGTAGTATCACATGCC+AGG + Chr5:107085655-107085674 None:intergenic 40.0%
TCCAATAGCCAACCAAGAAT+GGG + Chr5:107090710-107090729 None:intergenic 40.0%
TCCCTCACATATTACATCAG+AGG - Chr5:107084775-107084794 MsG0580030130.01.T01:intron 40.0%
TCCCTCTGATGTAATATGTG+AGG + Chr5:107084780-107084799 None:intergenic 40.0%
TGACAAGCGAGTGAAGATTT+GGG - Chr5:107089159-107089178 MsG0580030130.01.T01:intron 40.0%
TGCCGTATTATAGGATACAG+AGG + Chr5:107090243-107090262 None:intergenic 40.0%
TGGGACCATCCATTGAAATT+TGG - Chr5:107087650-107087669 MsG0580030130.01.T01:intron 40.0%
TGTTAGGTGAGTCTTGAAGA+TGG - Chr5:107090122-107090141 MsG0580030130.01.T01:intron 40.0%
TGTTGGTCGTCTATAACTGT+TGG - Chr5:107087981-107088000 MsG0580030130.01.T01:intron 40.0%
TGTTGTTGCCCTATTCAACA+AGG - Chr5:107087698-107087717 MsG0580030130.01.T01:intron 40.0%
TTATGATTGCCGCAATTTCG+TGG - Chr5:107084081-107084100 MsG0580030130.01.T01:intron 40.0%
TTCAATCCACATATCCTCAC+AGG - Chr5:107089512-107089531 MsG0580030130.01.T01:CDS 40.0%
TTGAGTTCCCCCACATTATT+TGG - Chr5:107088036-107088055 MsG0580030130.01.T01:intron 40.0%
TTTACCAATTGCACCAGCTA+CGG + Chr5:107085173-107085192 None:intergenic 40.0%
TTTCGGAATCCACGAAATTG+CGG + Chr5:107084093-107084112 None:intergenic 40.0%
! AAGATTTGGGATGTTGTTGC+TGG - Chr5:107089172-107089191 MsG0580030130.01.T01:intron 40.0%
! AAGGTTTTGCACCTAAACCA+AGG + Chr5:107085604-107085623 None:intergenic 40.0%
! ACCTTTTTCTCCTCCTTAAG+GGG + Chr5:107087117-107087136 None:intergenic 40.0%
! CATAAGGTTTGTAGTGTTGG+CGG + Chr5:107086459-107086478 None:intergenic 40.0%
! CGACTTGGAACCAAATAATG+TGG + Chr5:107088049-107088068 None:intergenic 40.0%
! CTTTTCTATCTCCTTCTCAG+AGG - Chr5:107090680-107090699 MsG0580030130.01.T01:five_prime_UTR 40.0%
! GACCTTTTTCTCCTCCTTAA+GGG + Chr5:107087118-107087137 None:intergenic 40.0%
! GGTGCAAAACCTTTTTCTGA+TGG - Chr5:107085611-107085630 MsG0580030130.01.T01:intron 40.0%
! TTTGGTTACCTCTTTTGCTC+TGG - Chr5:107087872-107087891 MsG0580030130.01.T01:CDS 40.0%
! TTTTGTACGACTAAGGGTCA+AGG + Chr5:107085842-107085861 None:intergenic 40.0%
!! TCTACCTTCTAGTTTGTGGA+TGG - Chr5:107088478-107088497 MsG0580030130.01.T01:intron 40.0%
!! TTCTTGGCTGTTGGTTCAAT+GGG - Chr5:107087631-107087650 MsG0580030130.01.T01:intron 40.0%
!!! CTTTTAAGGGACTGGCTTAT+TGG - Chr5:107084647-107084666 MsG0580030130.01.T01:intron 40.0%
AACCCCTAAATGGAGCCTAA+TGG - Chr5:107088314-107088333 MsG0580030130.01.T01:intron 45.0%
AAGGGTCAAGGTTCTGTTCT+AGG + Chr5:107085830-107085849 None:intergenic 45.0%
AGATAAACCAAGGCCCTGTT+TGG + Chr5:107086564-107086583 None:intergenic 45.0%
AGGTCGCGAGTAAATTGTGA+CGG + Chr5:107084695-107084714 None:intergenic 45.0%
AGTAGCATTCTGCACAGATG+TGG + Chr5:107090189-107090208 None:intergenic 45.0%
ATCTGCAGCATTCGGTATAC+AGG + Chr5:107090420-107090439 None:intergenic 45.0%
ATTCTGCACAGATGTGGCAT+TGG + Chr5:107090183-107090202 None:intergenic 45.0%
CAAGTGATTAACGGCCTGTT+CGG + Chr5:107084534-107084553 None:intergenic 45.0%
CAAGTTCATATCGCGGGTAT+TGG + Chr5:107087035-107087054 None:intergenic 45.0%
CACAAACCCACCAAACCATT+AGG + Chr5:107088332-107088351 None:intergenic 45.0%
CAGCAGTGCCAAGTGATTAA+CGG + Chr5:107084543-107084562 None:intergenic 45.0%
CATTGACCCTCACATGCATA+TGG + Chr5:107088665-107088684 None:intergenic 45.0%
CTAAGAGTGAAGACCCAGTT+TGG + Chr5:107084902-107084921 None:intergenic 45.0%
CTCCAATAGCCAACCAAGAA+TGG + Chr5:107090711-107090730 None:intergenic 45.0%
CTGACAAGCGAGTGAAGATT+TGG - Chr5:107089158-107089177 MsG0580030130.01.T01:intron 45.0%
CTTAAACTTGCAAGCGAAGC+TGG - Chr5:107085770-107085789 MsG0580030130.01.T01:intron 45.0%
CTTGAACCTGTGAGGATATG+TGG + Chr5:107089521-107089540 None:intergenic 45.0%
CTTGCTGGAACAAGGAATAC+AGG - Chr5:107088981-107089000 MsG0580030130.01.T01:intron 45.0%
GAAGGAGGTTCAGCAAAAAC+GGG + Chr5:107084134-107084153 None:intergenic 45.0%
GAGTTCAGCTACCTTGGTTT+AGG - Chr5:107085590-107085609 MsG0580030130.01.T01:CDS 45.0%
GAGTTCCAATCTGCAGCATT+CGG + Chr5:107090428-107090447 None:intergenic 45.0%
GCAATTTCGTGGATTCCGAA+AGG - Chr5:107084092-107084111 MsG0580030130.01.T01:intron 45.0%
GCACAACAGATCCTTCTTAG+TGG - Chr5:107089560-107089579 MsG0580030130.01.T01:CDS 45.0%
GCTGTGCAAAGTGGAAATTC+CGG + Chr5:107087081-107087100 None:intergenic 45.0%
GGATTGGGTTATTCAGTTCG+GGG - Chr5:107086638-107086657 MsG0580030130.01.T01:intron 45.0%
GGTTGAGTGAAGACCCATTA+TGG - Chr5:107084668-107084687 MsG0580030130.01.T01:intron 45.0%
GTAGTATCACATGCCAGGTT+TGG + Chr5:107085650-107085669 None:intergenic 45.0%
GTATACCGAATGCTGCAGAT+TGG - Chr5:107090420-107090439 MsG0580030130.01.T01:intron 45.0%
GTATTGGAGGAGGATTTAGG+AGG - Chr5:107088146-107088165 MsG0580030130.01.T01:intron 45.0%
TACCTAACTATGCACTCTGC+CGG - Chr5:107085316-107085335 MsG0580030130.01.T01:intron 45.0%
TCAAGTATCCATACCTGCCA+GGG + Chr5:107087007-107087026 None:intergenic 45.0%
TCTGCTTTCGAAACCCCTTT+CGG + Chr5:107084110-107084129 None:intergenic 45.0%
TGCATGACACCATGTCAACA+GGG + Chr5:107090338-107090357 None:intergenic 45.0%
TGTGGGGGAACTCAAAAATG+GGG + Chr5:107088031-107088050 None:intergenic 45.0%
TGTTGGGTGGCAAAGAGAAA+AGG - Chr5:107087786-107087805 MsG0580030130.01.T01:intron 45.0%
TTAACCCTACCCTGTTGACA+TGG - Chr5:107090326-107090345 MsG0580030130.01.T01:intron 45.0%
TTAACCGTAGCTGGTGCAAT+TGG - Chr5:107085166-107085185 MsG0580030130.01.T01:intron 45.0%
TTGATGAGTAGAGCCATGTG+TGG - Chr5:107087763-107087782 MsG0580030130.01.T01:intron 45.0%
! AATGGAGCCTAATGGTTTGG+TGG - Chr5:107088322-107088341 MsG0580030130.01.T01:intron 45.0%
! ACCCATTCTTGGTTGGCTAT+TGG - Chr5:107090706-107090725 MsG0580030130.01.T01:five_prime_UTR 45.0%
! CAAGTTGAAGGAGTACGACT+TGG + Chr5:107088064-107088083 None:intergenic 45.0%
! CATTCTTGGTTGGCTATTGG+AGG - Chr5:107090709-107090728 MsG0580030130.01.T01:five_prime_UTR 45.0%
! CCTTTTTCTCCTCCTTAAGG+GGG + Chr5:107087116-107087135 None:intergenic 45.0%
! CTTAGGTGCTGCCGTATTAT+AGG + Chr5:107090252-107090271 None:intergenic 45.0%
! GGACCTTTTTCTCCTCCTTA+AGG + Chr5:107087119-107087138 None:intergenic 45.0%
! TATGTACCTGGTGAGAGTGT+TGG + Chr5:107084183-107084202 None:intergenic 45.0%
!! AGCAAGACCAAGTACTGAGT+CGG + Chr5:107088967-107088986 None:intergenic 45.0%
!! ATGATGCAAAGGCATCAAGC+AGG + Chr5:107087571-107087590 None:intergenic 45.0%
!! ATGGAGCCTAATGGTTTGGT+GGG - Chr5:107088323-107088342 MsG0580030130.01.T01:intron 45.0%
!! CTTCTTGGCTGTTGGTTCAA+TGG - Chr5:107087630-107087649 MsG0580030130.01.T01:intron 45.0%
!! GGTGCGTATGGTTATTTCTG+AGG - Chr5:107089904-107089923 MsG0580030130.01.T01:intron 45.0%
!! TACTTGGTCTTGCTGGAACA+AGG - Chr5:107088973-107088992 MsG0580030130.01.T01:intron 45.0%
!! ATATAAAAAAAAAATTCATA+AGG + Chr5:107086475-107086494 None:intergenic 5.0%
!!! TTTATTTTTTAAAATCTAAA+AGG + Chr5:107088831-107088850 None:intergenic 5.0%
AACCGGCAGAGTGCATAGTT+AGG + Chr5:107085321-107085340 None:intergenic 50.0%
ACAGGGAACTTCTTGGCTGT+TGG - Chr5:107087622-107087641 MsG0580030130.01.T01:intron 50.0%
ACATGTTTATCTGCCCTGGC+AGG - Chr5:107086991-107087010 MsG0580030130.01.T01:intron 50.0%
AGCAACTGCTTGAACCTGTG+AGG + Chr5:107089529-107089548 None:intergenic 50.0%
AGTAGAGCCATGTGTGGTGT+TGG - Chr5:107087769-107087788 MsG0580030130.01.T01:intron 50.0%
ATGGCTTGATTGCCCCCTTA+AGG - Chr5:107087101-107087120 MsG0580030130.01.T01:intron 50.0%
CACAGGTTCAAGCAGTTGCT+TGG - Chr5:107089529-107089548 MsG0580030130.01.T01:CDS 50.0%
CAGCGAATCCAGAGCAAAAG+AGG + Chr5:107087883-107087902 None:intergenic 50.0%
CAGTGGCGTAATCACTTGTG+AGG - Chr5:107085346-107085365 MsG0580030130.01.T01:intron 50.0%
CCCCCTTAAGGAGGAGAAAA+AGG - Chr5:107087113-107087132 MsG0580030130.01.T01:intron 50.0%
CCCGTATAGCCAGAATGTGA+CGG + Chr5:107089826-107089845 None:intergenic 50.0%
CGAACAGGCCGTTAATCACT+TGG - Chr5:107084532-107084551 MsG0580030130.01.T01:CDS 50.0%
CGCCTTGAAGGATCTCAACA+TGG - Chr5:107085225-107085244 MsG0580030130.01.T01:intron 50.0%
CTAACGAGGGGAAGTTAGTG+TGG + Chr5:107090003-107090022 None:intergenic 50.0%
CTCAAGTATCCATACCTGCC+AGG + Chr5:107087008-107087027 None:intergenic 50.0%
CTCACAAGTGATTACGCCAC+TGG + Chr5:107085348-107085367 None:intergenic 50.0%
CTCAGAGGACAACCCATTCT+TGG - Chr5:107090695-107090714 MsG0580030130.01.T01:five_prime_UTR 50.0%
CTGATGTAGAGAGCTGGCAT+GGG - Chr5:107089856-107089875 MsG0580030130.01.T01:intron 50.0%
CTGCATGACACCATGTCAAC+AGG + Chr5:107090339-107090358 None:intergenic 50.0%
CTGGCAGGTATGGATACTTG+AGG - Chr5:107087006-107087025 MsG0580030130.01.T01:intron 50.0%
GACACCATGTCAACAGGGTA+GGG + Chr5:107090333-107090352 None:intergenic 50.0%
GAGGACAACCCATTCTTGGT+TGG - Chr5:107090699-107090718 MsG0580030130.01.T01:five_prime_UTR 50.0%
GATTAACGGCCTGTTCGGAT+TGG + Chr5:107084529-107084548 None:intergenic 50.0%
GCACATGCTTTAACCGTAGC+TGG - Chr5:107085157-107085176 MsG0580030130.01.T01:intron 50.0%
GCTTCTCCTTACCAACACTC+TGG - Chr5:107086400-107086419 MsG0580030130.01.T01:intron 50.0%
GCTTCTTGCGACTGGATCTA+TGG - Chr5:107090358-107090377 MsG0580030130.01.T01:intron 50.0%
GGATTATCCAAACAGGGCCT+TGG - Chr5:107086554-107086573 MsG0580030130.01.T01:intron 50.0%
GGCTTCTGTTGAGACATGCA+TGG + Chr5:107088748-107088767 None:intergenic 50.0%
GGGTTATTCAGTTCGGGGAA+CGG - Chr5:107086643-107086662 MsG0580030130.01.T01:intron 50.0%
GTAGAGCCATGTGTGGTGTT+GGG - Chr5:107087770-107087789 MsG0580030130.01.T01:intron 50.0%
GTTGAGATCCTTCAAGGCGT+CGG + Chr5:107085224-107085243 None:intergenic 50.0%
GTTGGCTATTGGAGGCTCAA+AGG - Chr5:107090717-107090736 MsG0580030130.01.T01:five_prime_UTR 50.0%
TCAAGCCATGCTGTGCAAAG+TGG + Chr5:107087090-107087109 None:intergenic 50.0%
TCATCTCCAACACTCTCACC+AGG - Chr5:107084174-107084193 MsG0580030130.01.T01:intron 50.0%
TGACACCATGTCAACAGGGT+AGG + Chr5:107090334-107090353 None:intergenic 50.0%
TGTACACGATACGGTCAGAG+TGG + Chr5:107084055-107084074 None:intergenic 50.0%
TTTATCTGCCCTGGCAGGTA+TGG - Chr5:107086996-107087015 MsG0580030130.01.T01:intron 50.0%
! AAGGTGATGGTCCAGAGTGT+TGG + Chr5:107086414-107086433 None:intergenic 50.0%
! ACACGCTGAGCACTCTTTTG+TGG - Chr5:107089883-107089902 MsG0580030130.01.T01:intron 50.0%
! CACATTCTGGCTATACGGGT+CGG - Chr5:107089827-107089846 MsG0580030130.01.T01:intron 50.0%
! CCGTCACATTCTGGCTATAC+GGG - Chr5:107089823-107089842 MsG0580030130.01.T01:intron 50.0%
! GCACTCTTTTGTGGTGCGTA+TGG - Chr5:107089892-107089911 MsG0580030130.01.T01:intron 50.0%
! GCCGTCACATTCTGGCTATA+CGG - Chr5:107089822-107089841 MsG0580030130.01.T01:intron 50.0%
! TGTTGTTTGTGCGCGTACTG+AGG - Chr5:107086858-107086877 MsG0580030130.01.T01:intron 50.0%
!! ACAAAAGAGTGCTCAGCGTG+TGG + Chr5:107089884-107089903 None:intergenic 50.0%
!! AGTCACACCGACTCAGTACT+TGG - Chr5:107088957-107088976 MsG0580030130.01.T01:intron 50.0%
!! GAATGGGTTGTCCTCTGAGA+AGG + Chr5:107090694-107090713 None:intergenic 50.0%
!! GACTCAGTACTTGGTCTTGC+TGG - Chr5:107088966-107088985 MsG0580030130.01.T01:intron 50.0%
!! GATGGTCCAGAGTGTTGGTA+AGG + Chr5:107086409-107086428 None:intergenic 50.0%
!!! ACTCTGCCGGTTTTATCCAG+TGG - Chr5:107085329-107085348 MsG0580030130.01.T01:intron 50.0%
ACACGATACGGTCAGAGTGG+TGG + Chr5:107084052-107084071 None:intergenic 55.0%
ATTTAGGGGTTGCGAGGGGA+AGG + Chr5:107088305-107088324 None:intergenic 55.0%
CACTCTGGACCATCACCTTC+TGG - Chr5:107086415-107086434 MsG0580030130.01.T01:intron 55.0%
CTCCATTTAGGGGTTGCGAG+GGG + Chr5:107088309-107088328 None:intergenic 55.0%
CTGGACCATCACCTTCTGGT+GGG - Chr5:107086419-107086438 MsG0580030130.01.T01:intron 55.0%
GCTCCATTTAGGGGTTGCGA+GGG + Chr5:107088310-107088329 None:intergenic 55.0%
GCTGATGTAGAGAGCTGGCA+TGG - Chr5:107089855-107089874 MsG0580030130.01.T01:intron 55.0%
GCTTGATTGCCCCCTTAAGG+AGG - Chr5:107087104-107087123 MsG0580030130.01.T01:intron 55.0%
GTAAGGACGCCGTCACATTC+TGG - Chr5:107089814-107089833 MsG0580030130.01.T01:intron 55.0%
GTCATGCAGCTTCTTGCGAC+TGG - Chr5:107090350-107090369 MsG0580030130.01.T01:intron 55.0%
TCTGGACCATCACCTTCTGG+TGG - Chr5:107086418-107086437 MsG0580030130.01.T01:intron 55.0%
TGATGCCCACCAGAAGGTGA+TGG + Chr5:107086427-107086446 None:intergenic 55.0%
TTCCCCTCGCAACCCCTAAA+TGG - Chr5:107088304-107088323 MsG0580030130.01.T01:intron 55.0%
TTGCCACCCAACACCACACA+TGG + Chr5:107087779-107087798 None:intergenic 55.0%
TTTAGGGGTTGCGAGGGGAA+GGG + Chr5:107088304-107088323 None:intergenic 55.0%
!! GAGTACTGATGCCCACCAGA+AGG + Chr5:107086433-107086452 None:intergenic 55.0%
!! TCAGCGCTGATGTAGAGAGC+TGG - Chr5:107089850-107089869 MsG0580030130.01.T01:intron 55.0%
ACAATACCGCCGCACCGTTC+CGG - Chr5:107084024-107084043 MsG0580030130.01.T01:CDS 60.0%
GGCTCCATTTAGGGGTTGCG+AGG + Chr5:107088311-107088330 None:intergenic 60.0%
TTCTTCTTCTCTCGCGCCCC+CGG - Chr5:107083999-107084018 MsG0580030130.01.T01:CDS 60.0%
! GAGCCATGTGTGGTGTTGGG+TGG - Chr5:107087773-107087792 MsG0580030130.01.T01:intron 60.0%
! TACGGTCAGAGTGGTGGTGC+CGG + Chr5:107084046-107084065 None:intergenic 60.0%
! TCAGAGTGGTGGTGCCGGAA+CGG + Chr5:107084041-107084060 None:intergenic 60.0%
CGGTGCGGCGGTATTGTTGC+CGG + Chr5:107084021-107084040 None:intergenic 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG + Chr5:107088288-107088307 None:intergenic 65.0%
GGTGCGGCGGTATTGTTGCC+GGG + Chr5:107084020-107084039 None:intergenic 65.0%
GTGCGGCGGTATTGTTGCCG+GGG + Chr5:107084019-107084038 None:intergenic 65.0%
TGCGGCGGTATTGTTGCCGG+GGG + Chr5:107084018-107084037 None:intergenic 65.0%
!! AGGGGAGGGCTTTGGGAGGA+GGG + Chr5:107088281-107088300 None:intergenic 65.0%
AGGGGTTGCGAGGGGAAGGG+AGG + Chr5:107088301-107088320 None:intergenic 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG + Chr5:107088289-107088308 None:intergenic 70.0%
GGGGTTGCGAGGGGAAGGGA+GGG + Chr5:107088300-107088319 None:intergenic 70.0%
GGGTTGCGAGGGGAAGGGAG+GGG + Chr5:107088299-107088318 None:intergenic 70.0%
TGCGAGGGGAAGGGAGGGGA+GGG + Chr5:107088295-107088314 None:intergenic 70.0%
TTGCGAGGGGAAGGGAGGGG+AGG + Chr5:107088296-107088315 None:intergenic 70.0%
! GTGGTGGTGCCGGAACGGTG+CGG + Chr5:107084036-107084055 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+AGG + Chr5:107088285-107088304 None:intergenic 70.0%
!! GAGGGGAGGGCTTTGGGAGG+AGG + Chr5:107088282-107088301 None:intergenic 70.0%
!! GGGGAGGGCTTTGGGAGGAG+GGG + Chr5:107088280-107088299 None:intergenic 70.0%
! GTGGTGCCGGAACGGTGCGG+CGG + Chr5:107084033-107084052 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 107083956 107090789 107083956 ID=MsG0580030130.01;Name=MsG0580030130.01
Chr5 mRNA 107083956 107090789 107083956 ID=MsG0580030130.01.T01;Parent=MsG0580030130.01;Name=MsG0580030130.01.T01;_AED=0.42;_eAED=0.52;_QI=127|0.25|0.66|1|1|1|9|0|339
Chr5 exon 107083956 107084072 107083956 ID=MsG0580030130.01.T01:exon:17336;Parent=MsG0580030130.01.T01
Chr5 exon 107084206 107084267 107084206 ID=MsG0580030130.01.T01:exon:17335;Parent=MsG0580030130.01.T01
Chr5 exon 107084473 107084617 107084473 ID=MsG0580030130.01.T01:exon:17334;Parent=MsG0580030130.01.T01
Chr5 exon 107085514 107085610 107085514 ID=MsG0580030130.01.T01:exon:17333;Parent=MsG0580030130.01.T01
Chr5 exon 107086915 107086983 107086915 ID=MsG0580030130.01.T01:exon:17332;Parent=MsG0580030130.01.T01
Chr5 exon 107087061 107087119 107087061 ID=MsG0580030130.01.T01:exon:17331;Parent=MsG0580030130.01.T01
Chr5 exon 107087845 107087941 107087845 ID=MsG0580030130.01.T01:exon:17330;Parent=MsG0580030130.01.T01
Chr5 exon 107089383 107089643 107089383 ID=MsG0580030130.01.T01:exon:17329;Parent=MsG0580030130.01.T01
Chr5 exon 107090550 107090789 107090550 ID=MsG0580030130.01.T01:exon:17328;Parent=MsG0580030130.01.T01
Chr5 five_prime_UTR 107090663 107090789 107090663 ID=MsG0580030130.01.T01:five_prime_utr;Parent=MsG0580030130.01.T01
Chr5 CDS 107090550 107090662 107090550 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107089383 107089643 107089383 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107087845 107087941 107087845 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107087061 107087119 107087061 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107086915 107086983 107086915 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107085514 107085610 107085514 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107084473 107084617 107084473 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107084206 107084267 107084206 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Chr5 CDS 107083956 107084072 107083956 ID=MsG0580030130.01.T01:cds;Parent=MsG0580030130.01.T01
Gene Sequence

>MsG0580030130.01.T01

ATGATTGCCGCAATTTCGTGGATTCCGAAAGGGGTTTCGAAAGCAGAACCCGTTTTTGCTGAACCTCCTTCTAAAGATGAAATTGAAGAAATCATCTCCAACACTCTCACCAGTGTAGGAGAAGAAGATGAGAATGAAGAAGACGCTAACAAACAGAACGATGAAGTCGCACATGCTTTAACCGTAGCTGGTGCAATTGGTAAACCATCCAATGGAAATAGTGATAATATTACCGACGCCTTGAAGGATCTCAACATGGATAACTATGATGAAGAGGATGACAAAGGTGTCTTTTTTCTCCATCCATCTATCTTTAACTCATTCACTTACCTAACTATGCACTCTGCCGGTTTTATCCAGTGGCGTAATCACTTGAGGAGTATGATTCTGAAGATATGGGACATGATTATTAATCCAACTGATTCTGTTGTTGTTTGTGCGCGTACTGAGGATGATGTCAATTTTCTTGAAGGAACTTCTTGGCTGTTGGTTCAATGGGACCATCCATTGAAATTTGGGACCTTGATGTTATTGATGAGTAGAGCCATGTGTGGTGTTGGGTGGCAAAGAGAAAAGGAAAAGGGGAAAAATGGGAAAAATAATACACTTGCAAGTGCTAGTGCTGACAAGCGAGTGAAGATTTGGGATGTTGTTGCTGGAAAGTGTACTATTACAATGGATCATCACTCTGATAAGGTGAGTCTTGAAGATGGTACGATCCAATGTTTTGATGTTCGGACTGCAATGTCCAATGCCACATCTGTGCAGAATGCTACTTTTACACTTCATGCACACGATAAATCTGTTACCTCTGTATCCTATAATACGGCAGCACCTAAGTGTAAACTTTGGGATTTGTCTAACAACCAACCATCTTCTGTTGCATCTAAAGAGCCAAAAGCTGGGCTGTCTTTTCTATCTCCTTCTCAGAGGACAACCCATTCTTGGTTGGCTATTGGAGGCTCAAAGGAAAATTCAAGTCGTGAAAAGCAGATGACCTTTAACTTAAGGTATTCTTAA
Protein sequence

>MsG0580030130.01.T01

MIAAISWIPKGVSKAEPVFAEPPSKDEIEEIISNTLTSVGEEDENEEDANKQNDEVAHALTVAGAIGKPSNGNSDNITDALKDLNMDNYDEEDDKGVFFLHPSIFNSFTYLTMHSAGFIQWRNHLRSMILKIWDMIINPTDSVVVCARTEDDVNFLEGTSWLLVQWDHPLKFGTLMLLMSRAMCGVGWQREKEKGKNGKNNTLASASADKRVKIWDVVAGKCTITMDHHSDKVSLEDGTIQCFDVRTAMSNATSVQNATFTLHAHDKSVTSVSYNTAAPKCKLWDLSNNQPSSVASKEPKAGLSFLSPSQRTTHSWLAIGGSKENSSREKQMTFNLRYS*