Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029754.01.T01 | XP_003617477.2 | 96.981 | 265 | 3 | 1 | 1 | 265 | 17 | 276 | 3.53E-163 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029754.01.T01 | P14678 | 59.848 | 132 | 49 | 2 | 1 | 131 | 17 | 145 | 1.13E-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029754.01.T01 | G7K3F8 | 96.981 | 265 | 3 | 1 | 1 | 265 | 17 | 276 | 1.69e-163 | 463 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003585.01 | MsG0580029754.01 | 0.802942 | 4.416258e-49 | 2.191155e-46 |
| MsG0180003623.01 | MsG0580029754.01 | 0.831104 | 2.016370e-55 | 2.166507e-52 |
| MsG0180004503.01 | MsG0580029754.01 | 0.857867 | 1.218457e-62 | 3.050687e-59 |
| MsG0480020796.01 | MsG0580029754.01 | 0.830240 | 3.282250e-55 | 3.438581e-52 |
| MsG0480022927.01 | MsG0580029754.01 | 0.884568 | 1.715594e-71 | 1.137672e-67 |
| MsG0480022955.01 | MsG0580029754.01 | 0.832347 | 9.954269e-56 | 1.109537e-52 |
| MsG0480023996.01 | MsG0580029754.01 | 0.800783 | 1.225749e-48 | 5.757326e-46 |
| MsG0380016201.01 | MsG0580029754.01 | 0.835705 | 1.436199e-56 | 1.770462e-53 |
| MsG0380016732.01 | MsG0580029754.01 | 0.803845 | 2.870507e-49 | 1.457714e-46 |
| MsG0380016744.01 | MsG0580029754.01 | 0.834851 | 2.359552e-56 | 2.834855e-53 |
| MsG0380016805.01 | MsG0580029754.01 | 0.838412 | 2.921013e-57 | 3.909226e-54 |
| MsG0580029754.01 | MsG0580030130.01 | 0.825937 | 3.569953e-54 | 3.300714e-51 |
| MsG0580029754.01 | MsG0780039937.01 | 0.817555 | 3.103282e-52 | 2.267223e-49 |
| MsG0580029754.01 | MsG0780040174.01 | 0.815710 | 8.041344e-52 | 5.585828e-49 |
| MsG0580029754.01 | MsG0780041311.01 | 0.875169 | 3.808238e-68 | 1.760947e-64 |
| MsG0280007606.01 | MsG0580029754.01 | 0.837739 | 4.351056e-57 | 5.705263e-54 |
| MsG0280010232.01 | MsG0580029754.01 | 0.822165 | 2.741390e-53 | 2.276642e-50 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029754.01.T01 | MTR_5g092010 | 96.981 | 265 | 3 | 1 | 1 | 265 | 17 | 276 | 4.28e-167 | 463 |
| MsG0580029754.01.T01 | MTR_8g080090 | 93.671 | 158 | 5 | 2 | 1 | 157 | 17 | 170 | 6.39e-81 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029754.01.T01 | AT5G44500 | 83.824 | 136 | 22 | 0 | 1 | 136 | 17 | 152 | 9.32e-78 | 236 |
| MsG0580029754.01.T01 | AT5G44500 | 83.824 | 136 | 22 | 0 | 1 | 136 | 17 | 152 | 9.32e-78 | 236 |
| MsG0580029754.01.T01 | AT4G20440 | 88.235 | 136 | 15 | 1 | 1 | 136 | 17 | 151 | 1.73e-70 | 218 |
| MsG0580029754.01.T01 | AT4G20440 | 88.235 | 136 | 15 | 1 | 1 | 136 | 17 | 151 | 1.73e-70 | 218 |
| MsG0580029754.01.T01 | AT4G20440 | 88.235 | 136 | 15 | 1 | 1 | 136 | 17 | 151 | 1.73e-70 | 218 |
| MsG0580029754.01.T01 | AT4G20440 | 88.235 | 136 | 15 | 1 | 1 | 136 | 17 | 151 | 1.73e-70 | 218 |
| MsG0580029754.01.T01 | AT4G20440 | 88.235 | 136 | 15 | 1 | 1 | 136 | 17 | 151 | 1.73e-70 | 218 |
Find 142 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATGCCGCCGGGGCAATT+TGG | 0.120570 | 5:-101581708 | MsG0580029754.01.T01:CDS |
| GGAAGTGGTGTTCCGGTTTA+TGG | 0.187174 | 5:-101581522 | MsG0580029754.01.T01:CDS |
| CACTGTTGCTGCTGTTGATT+TGG | 0.210852 | 5:+101581462 | None:intergenic |
| CTATGCCGCCGGGGCAATTT+GGG | 0.264839 | 5:-101581707 | MsG0580029754.01.T01:CDS |
| TGCTGTTGATTTGGAGCATT+TGG | 0.292429 | 5:+101581471 | None:intergenic |
| CAAGCTCAGCCTGGTCTTGC+TGG | 0.294341 | 5:-101581915 | MsG0580029754.01.T01:CDS |
| GGTATGCCACCTCCTCAGTA+TGG | 0.303881 | 5:-101581654 | MsG0580029754.01.T01:CDS |
| TGCAGCAGCATTTACAGCTT+TGG | 0.337717 | 5:+101581998 | None:intergenic |
| TCCTCCTGGAAGTGGTGTTC+CGG | 0.346552 | 5:-101581529 | MsG0580029754.01.T01:CDS |
| ACTTGGTTTGGTTCTACTTC+GGG | 0.347834 | 5:-101582078 | MsG0580029754.01.T01:CDS |
| GGTGGTCCTCCTCCGCAATT+TGG | 0.372572 | 5:-101581675 | MsG0580029754.01.T01:CDS |
| CCAGGAGGAGGAGGCATTCC+AGG | 0.379156 | 5:+101581543 | None:intergenic |
| CCTCCTGGTCAGATGGTTAG+AGG | 0.388518 | 5:-101581609 | MsG0580029754.01.T01:CDS |
| TCAACTTGTCGGAAAATTCA+TGG | 0.388812 | 5:-101582210 | MsG0580029754.01.T01:CDS |
| CCAGGCTGAGCTTGAATAAC+CGG | 0.392249 | 5:+101581924 | None:intergenic |
| CGAGGCGGTGGCTGCATTCC+AGG | 0.395962 | 5:+101581567 | None:intergenic |
| CCTGGAATGCCTCCTCCTCC+TGG | 0.401308 | 5:-101581543 | MsG0580029754.01.T01:CDS |
| TGTCCAGGATGTCCAGGATA+TGG | 0.405313 | 5:+101581765 | None:intergenic |
| CACTTGGTTTGGTTCTACTT+CGG | 0.408536 | 5:-101582079 | MsG0580029754.01.T01:CDS |
| TGACCAGGCGGACGCATAAC+CGG | 0.411010 | 5:+101581807 | None:intergenic |
| TCAGTATGGGCAGAGACCTA+TGG | 0.417999 | 5:-101581640 | MsG0580029754.01.T01:CDS |
| GCAATGGCTGGTCCTGGAAT+TGG | 0.421320 | 5:-101581978 | MsG0580029754.01.T01:CDS |
| CCTGCAGCACGACCAATTCC+AGG | 0.425807 | 5:+101581966 | None:intergenic |
| CGACAAGTTGACGACCGTCT+TGG | 0.426215 | 5:+101582222 | None:intergenic |
| AGACCGCCGCACACTTGGTT+TGG | 0.426719 | 5:-101582090 | MsG0580029754.01.T01:CDS |
| ATGCCATATCCTGGACATCC+TGG | 0.445798 | 5:-101581768 | MsG0580029754.01.T01:CDS |
| CAAGTGTGCGGCGGTCTTCA+CGG | 0.446069 | 5:+101582096 | None:intergenic |
| CCAAATTGCCCCGGCGGCAT+AGG | 0.449138 | 5:+101581708 | None:intergenic |
| CCCACCTCCTCCTGGTCAGA+TGG | 0.451634 | 5:-101581616 | MsG0580029754.01.T01:CDS |
| GCTGCTGCAATGGCTGGTCC+TGG | 0.451669 | 5:-101581984 | MsG0580029754.01.T01:CDS |
| CGCCACATGAATCTTGTTCT+CGG | 0.452233 | 5:-101582179 | MsG0580029754.01.T01:CDS |
| ATGCAGCCACCGCCTCGTCC+TGG | 0.453454 | 5:-101581561 | MsG0580029754.01.T01:CDS |
| GGAGGAGGCATGCCAGGCCG+AGG | 0.453758 | 5:+101581495 | None:intergenic |
| CCTCCTGCTCCTCCTCGTCC+TGG | 0.453758 | 5:-101581585 | MsG0580029754.01.T01:CDS |
| TTTGGTGGAGGAGGCATGCC+AGG | 0.462102 | 5:+101581489 | None:intergenic |
| GTTGTTTCGATGACAGTTGA+AGG | 0.465323 | 5:-101582047 | MsG0580029754.01.T01:CDS |
| GGCCGAGGTGGACCATAAAC+CGG | 0.466333 | 5:+101581510 | None:intergenic |
| GGCATTCCAGGACGAGGCGG+TGG | 0.470062 | 5:+101581555 | None:intergenic |
| GAACGAGATTCCTCCGGTGG+TGG | 0.470828 | 5:+101582020 | None:intergenic |
| CCACCGCCTCCTATGCCGCC+GGG | 0.471646 | 5:-101581717 | MsG0580029754.01.T01:CDS |
| ACCATCTGACCAGGAGGAGG+TGG | 0.471852 | 5:+101581615 | None:intergenic |
| CGTGAAGACCGCCGCACACT+TGG | 0.474603 | 5:-101582095 | MsG0580029754.01.T01:CDS |
| CGAGATTCCTCCGGTGGTGG+AGG | 0.477225 | 5:+101582023 | None:intergenic |
| CAAGACGGTCGTCAACTTGT+CGG | 0.478808 | 5:-101582221 | MsG0580029754.01.T01:CDS |
| GGTGTAGGTGGACCTGCTCC+TGG | 0.479069 | 5:-101581882 | MsG0580029754.01.T01:CDS |
| GCACCACCAGGATATGATAC+TGG | 0.479978 | 5:+101581831 | None:intergenic |
| GCTGGTCCTGTTCGTGGTGT+AGG | 0.480465 | 5:-101581897 | MsG0580029754.01.T01:CDS |
| GGTCTTGCTGGTCCTGTTCG+TGG | 0.480513 | 5:-101581903 | MsG0580029754.01.T01:CDS |
| TCGAAAACTTCCACCGGCGA+AGG | 0.481236 | 5:-101582141 | MsG0580029754.01.T01:CDS |
| GTTTATGGTCCACCTCGGCC+TGG | 0.481603 | 5:-101581507 | MsG0580029754.01.T01:CDS |
| GTAAATGCTGCTGCAATGGC+TGG | 0.484369 | 5:-101581990 | MsG0580029754.01.T01:CDS |
| CCTGGAATTGGTCGTGCTGC+AGG | 0.486165 | 5:-101581966 | MsG0580029754.01.T01:CDS |
| ATCATATCCTGGTGGTGCTC+CGG | 0.486386 | 5:-101581826 | MsG0580029754.01.T01:CDS |
| ATTGGTCGTGCTGCAGGTAG+AGG | 0.488956 | 5:-101581960 | MsG0580029754.01.T01:CDS |
| TAAACCGGAACACCACTTCC+AGG | 0.492870 | 5:+101581525 | None:intergenic |
| GGCATACCAAATTGCGGAGG+AGG | 0.492946 | 5:+101581669 | None:intergenic |
| TCCACCGCCTCCTATGCCGC+CGG | 0.493463 | 5:-101581718 | MsG0580029754.01.T01:CDS |
| GCTCCGGTTATGCGTCCGCC+TGG | 0.493981 | 5:-101581810 | MsG0580029754.01.T01:CDS |
| ATTCCAGGACGAGGAGGAGC+AGG | 0.494294 | 5:+101581582 | None:intergenic |
| CTCTGCCCATACTGAGGAGG+TGG | 0.494871 | 5:+101581648 | None:intergenic |
| ATGCCTCCTCCTCCTGGAAG+TGG | 0.499579 | 5:-101581537 | MsG0580029754.01.T01:CDS |
| CCTATGGGCCCACCTCCTCC+TGG | 0.499583 | 5:-101581624 | MsG0580029754.01.T01:CDS |
| GGTCCACCTACACCACGAAC+AGG | 0.501617 | 5:+101581891 | None:intergenic |
| GTTATGCGTCCGCCTGGTCA+AGG | 0.502014 | 5:-101581804 | MsG0580029754.01.T01:CDS |
| CCAGGAGGAGGTGGGCCCAT+AGG | 0.503981 | 5:+101581624 | None:intergenic |
| GGGCAATTTGGGCAGAGACC+AGG | 0.504430 | 5:-101581696 | MsG0580029754.01.T01:CDS |
| TTTGGAGCATTTGGTGGAGG+AGG | 0.507736 | 5:+101581480 | None:intergenic |
| GTCTTCACGGTCGCCGTCGG+TGG | 0.516113 | 5:+101582109 | None:intergenic |
| AATTGCCCCGGCGGCATAGG+AGG | 0.518983 | 5:+101581711 | None:intergenic |
| GTATGCCACCTCCTCAGTAT+GGG | 0.520179 | 5:-101581653 | MsG0580029754.01.T01:CDS |
| CAGTATGGGCAGAGACCTAT+GGG | 0.520524 | 5:-101581639 | MsG0580029754.01.T01:CDS |
| TGCCCCGGCGGCATAGGAGG+CGG | 0.521351 | 5:+101581714 | None:intergenic |
| CCGGTTATTCAAGCTCAGCC+TGG | 0.521861 | 5:-101581924 | MsG0580029754.01.T01:CDS |
| ATCTGCGGTGGACCTTGTCC+AGG | 0.522039 | 5:+101581750 | None:intergenic |
| CCTGGTCAAATGCCATATCC+TGG | 0.523384 | 5:-101581777 | MsG0580029754.01.T01:CDS |
| AGCTGTAAATGCTGCTGCAA+TGG | 0.530081 | 5:-101581994 | MsG0580029754.01.T01:CDS |
| GGACCTTGTCCAGGATGTCC+AGG | 0.530197 | 5:+101581759 | None:intergenic |
| TGACCAGGTGGACCTTGACC+AGG | 0.530553 | 5:+101581792 | None:intergenic |
| CGCATAACCGGAGCACCACC+AGG | 0.532565 | 5:+101581819 | None:intergenic |
| TGATTTGGAGCATTTGGTGG+AGG | 0.533563 | 5:+101581477 | None:intergenic |
| CCAGGATATGGCATTTGACC+AGG | 0.535882 | 5:+101581777 | None:intergenic |
| TGTTGATTTGGAGCATTTGG+TGG | 0.537037 | 5:+101581474 | None:intergenic |
| GGCTGCATCATACCAGGAGC+AGG | 0.537879 | 5:+101581870 | None:intergenic |
| CGTCCGCCAGTATCATATCC+TGG | 0.538133 | 5:-101581837 | MsG0580029754.01.T01:CDS |
| AAGGTCCACCGCAGATGGTG+AGG | 0.541082 | 5:-101581743 | MsG0580029754.01.T01:CDS |
| GGAGGAGGCATTCCAGGACG+AGG | 0.543227 | 5:+101581549 | None:intergenic |
| CGAAAACTTCCACCGGCGAA+GGG | 0.547258 | 5:-101582140 | MsG0580029754.01.T01:CDS |
| GCGGTCTTCACGGTCGCCGT+CGG | 0.552395 | 5:+101582106 | None:intergenic |
| TGGACAAGGTCCACCGCAGA+TGG | 0.555676 | 5:-101581748 | MsG0580029754.01.T01:CDS |
| CCCGGCGGCATAGGAGGCGG+TGG | 0.555943 | 5:+101581717 | None:intergenic |
| ATCTGCGGCTGCATCATACC+AGG | 0.556260 | 5:+101581864 | None:intergenic |
| CCGCCTGGTCAAGGTCCACC+TGG | 0.556675 | 5:-101581795 | MsG0580029754.01.T01:CDS |
| GGAGGCATGCCAGGCCGAGG+TGG | 0.567307 | 5:+101581498 | None:intergenic |
| CGAACAGGACCAGCAAGACC+AGG | 0.568021 | 5:+101581906 | None:intergenic |
| TTCCGGTTTATGGTCCACCT+CGG | 0.570223 | 5:-101581512 | MsG0580029754.01.T01:CDS |
| AGTTGAAGGTCCTCCACCAC+CGG | 0.570304 | 5:-101582033 | MsG0580029754.01.T01:CDS |
| TGCAGGTAGAGGTATTCCTC+CGG | 0.570514 | 5:-101581949 | MsG0580029754.01.T01:CDS |
| TGAGCTTGAATAACCGGCGC+CGG | 0.578220 | 5:+101581930 | None:intergenic |
| ACACCACTTCCAGGAGGAGG+AGG | 0.578227 | 5:+101581534 | None:intergenic |
| GGACCCCTCACCATCTGCGG+TGG | 0.578400 | 5:+101581738 | None:intergenic |
| CTTGGTTTGGTTCTACTTCG+GGG | 0.587320 | 5:-101582077 | MsG0580029754.01.T01:CDS |
| TTGGAACGAGATTCCTCCGG+TGG | 0.588436 | 5:+101582017 | None:intergenic |
| TAGAGGTATTCCTCCGGCGC+CGG | 0.590446 | 5:-101581943 | MsG0580029754.01.T01:CDS |
| CTCTGCCCAAATTGCCCCGG+CGG | 0.590935 | 5:+101581702 | None:intergenic |
| AATTGCGGAGGAGGACCACC+TGG | 0.591266 | 5:+101581678 | None:intergenic |
| GGTCCTGTTCGTGGTGTAGG+TGG | 0.591284 | 5:-101581894 | MsG0580029754.01.T01:CDS |
| CTAACCATCTGACCAGGAGG+AGG | 0.594137 | 5:+101581612 | None:intergenic |
| CCAGGACGAGGAGGAGCAGG+AGG | 0.595102 | 5:+101581585 | None:intergenic |
| GCTTTGGAACGAGATTCCTC+CGG | 0.595135 | 5:+101582014 | None:intergenic |
| AGGTCCACCGCAGATGGTGA+GGG | 0.597838 | 5:-101581742 | MsG0580029754.01.T01:CDS |
| AGAGTTTCGAAAACTTCCAC+CGG | 0.602174 | 5:-101582147 | MsG0580029754.01.T01:CDS |
| GGTCTCTGCCCAAATTGCCC+CGG | 0.603588 | 5:+101581699 | None:intergenic |
| GGTGGCTGCATTCCAGGACG+AGG | 0.605433 | 5:+101581573 | None:intergenic |
| CACCGCCTCCTATGCCGCCG+GGG | 0.606476 | 5:-101581716 | MsG0580029754.01.T01:CDS |
| GGCTGCATTCCAGGACGAGG+AGG | 0.614859 | 5:+101581576 | None:intergenic |
| GGTGGACCCCTCACCATCTG+CGG | 0.614870 | 5:+101581735 | None:intergenic |
| CAATTTGGGCAGAGACCAGG+TGG | 0.620080 | 5:-101581693 | MsG0580029754.01.T01:CDS |
| GGTCCTCTAACCATCTGACC+AGG | 0.622862 | 5:+101581606 | None:intergenic |
| GGAACACCACTTCCAGGAGG+AGG | 0.623836 | 5:+101581531 | None:intergenic |
| GGTCCACCGCAGATGGTGAG+GGG | 0.627488 | 5:-101581741 | MsG0580029754.01.T01:CDS |
| CCATCTGACCAGGAGGAGGT+GGG | 0.631940 | 5:+101581616 | None:intergenic |
| GCTTGAATAACCGGCGCCGG+AGG | 0.636298 | 5:+101581933 | None:intergenic |
| TATCCTGGACATCCTGGACA+AGG | 0.636817 | 5:-101581762 | MsG0580029754.01.T01:CDS |
| GGAGGCATTCCAGGACGAGG+CGG | 0.646005 | 5:+101581552 | None:intergenic |
| TGAAGGTCCTCCACCACCGG+AGG | 0.647929 | 5:-101582030 | MsG0580029754.01.T01:CDS |
| GGATATGGCATTTGACCAGG+TGG | 0.660601 | 5:+101581780 | None:intergenic |
| GGTCTCTGCCCATACTGAGG+AGG | 0.662332 | 5:+101581645 | None:intergenic |
| ACTGGCGGACGCGAAATCTG+CGG | 0.665825 | 5:+101581849 | None:intergenic |
| ATAGGTCTCTGCCCATACTG+AGG | 0.666393 | 5:+101581642 | None:intergenic |
| CGAGAACAAGATTCATGTGG+CGG | 0.667753 | 5:+101582180 | None:intergenic |
| CGCCGAGAACAAGATTCATG+TGG | 0.676790 | 5:+101582177 | None:intergenic |
| GGAGGTGGCATACCAAATTG+CGG | 0.683306 | 5:+101581663 | None:intergenic |
| AAGGGTAAGAAAACCACCGA+CGG | 0.686452 | 5:-101582122 | MsG0580029754.01.T01:CDS |
| CCTCTAACCATCTGACCAGG+AGG | 0.688741 | 5:+101581609 | None:intergenic |
| GAACCAAACCAAGTGTGCGG+CGG | 0.690540 | 5:+101582087 | None:intergenic |
| CCAGGTGGACCTTGACCAGG+CGG | 0.694084 | 5:+101581795 | None:intergenic |
| GTAGAACCAAACCAAGTGTG+CGG | 0.697209 | 5:+101582084 | None:intergenic |
| CCACCAGGATATGATACTGG+CGG | 0.702997 | 5:+101581834 | None:intergenic |
| GGTGGCATACCAAATTGCGG+AGG | 0.706492 | 5:+101581666 | None:intergenic |
| ATGCGAGTAACAATCCAAGA+CGG | 0.723721 | 5:-101582236 | MsG0580029754.01.T01:CDS |
| ACCGGAACACCACTTCCAGG+AGG | 0.726433 | 5:+101581528 | None:intergenic |
| CCGCCAGTATCATATCCTGG+TGG | 0.734163 | 5:-101581834 | MsG0580029754.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TCAACTTGTCGGAAAATTCA+TGG | - | Chr5:101581487-101581506 | MsG0580029754.01.T01:CDS | 35.0% | |
| AGAGTTTCGAAAACTTCCAC+CGG | - | Chr5:101581550-101581569 | MsG0580029754.01.T01:CDS | 40.0% | |
| ATGCGAGTAACAATCCAAGA+CGG | - | Chr5:101581461-101581480 | MsG0580029754.01.T01:CDS | 40.0% | |
| ! | GTTGTTTCGATGACAGTTGA+AGG | - | Chr5:101581650-101581669 | MsG0580029754.01.T01:CDS | 40.0% |
| !! | ACTTGGTTTGGTTCTACTTC+GGG | - | Chr5:101581619-101581638 | MsG0580029754.01.T01:CDS | 40.0% |
| !! | CACTTGGTTTGGTTCTACTT+CGG | - | Chr5:101581618-101581637 | MsG0580029754.01.T01:CDS | 40.0% |
| !! | TGCTGTTGATTTGGAGCATT+TGG | + | Chr5:101582229-101582248 | None:intergenic | 40.0% |
| !! | TGTTGATTTGGAGCATTTGG+TGG | + | Chr5:101582226-101582245 | None:intergenic | 40.0% |
| AAGGGTAAGAAAACCACCGA+CGG | - | Chr5:101581575-101581594 | MsG0580029754.01.T01:CDS | 45.0% | |
| AGCTGTAAATGCTGCTGCAA+TGG | - | Chr5:101581703-101581722 | MsG0580029754.01.T01:CDS | 45.0% | |
| CGAGAACAAGATTCATGTGG+CGG | + | Chr5:101581520-101581539 | None:intergenic | 45.0% | |
| CGCCACATGAATCTTGTTCT+CGG | - | Chr5:101581518-101581537 | MsG0580029754.01.T01:CDS | 45.0% | |
| GTAGAACCAAACCAAGTGTG+CGG | + | Chr5:101581616-101581635 | None:intergenic | 45.0% | |
| TGCAGCAGCATTTACAGCTT+TGG | + | Chr5:101581702-101581721 | None:intergenic | 45.0% | |
| ! | CACTGTTGCTGCTGTTGATT+TGG | + | Chr5:101582238-101582257 | None:intergenic | 45.0% |
| ! | TGATTTGGAGCATTTGGTGG+AGG | + | Chr5:101582223-101582242 | None:intergenic | 45.0% |
| !! | CTTGGTTTGGTTCTACTTCG+GGG | - | Chr5:101581620-101581639 | MsG0580029754.01.T01:CDS | 45.0% |
| ATAGGTCTCTGCCCATACTG+AGG | + | Chr5:101582058-101582077 | None:intergenic | 50.0% | |
| ATGCCATATCCTGGACATCC+TGG | - | Chr5:101581929-101581948 | MsG0580029754.01.T01:CDS | 50.0% | |
| CAAGACGGTCGTCAACTTGT+CGG | - | Chr5:101581476-101581495 | MsG0580029754.01.T01:CDS | 50.0% | |
| CAGTATGGGCAGAGACCTAT+GGG | - | Chr5:101582058-101582077 | MsG0580029754.01.T01:CDS | 50.0% | |
| CCACCAGGATATGATACTGG+CGG | + | Chr5:101581866-101581885 | None:intergenic | 50.0% | |
| CCAGGATATGGCATTTGACC+AGG | + | Chr5:101581923-101581942 | None:intergenic | 50.0% | |
| CCAGGCTGAGCTTGAATAAC+CGG | + | Chr5:101581776-101581795 | None:intergenic | 50.0% | |
| CCTGGTCAAATGCCATATCC+TGG | - | Chr5:101581920-101581939 | MsG0580029754.01.T01:CDS | 50.0% | |
| CGCCGAGAACAAGATTCATG+TGG | + | Chr5:101581523-101581542 | None:intergenic | 50.0% | |
| GCACCACCAGGATATGATAC+TGG | + | Chr5:101581869-101581888 | None:intergenic | 50.0% | |
| GGAAGTGGTGTTCCGGTTTA+TGG | - | Chr5:101582175-101582194 | MsG0580029754.01.T01:CDS | 50.0% | |
| GGAGGTGGCATACCAAATTG+CGG | + | Chr5:101582037-101582056 | None:intergenic | 50.0% | |
| GGATATGGCATTTGACCAGG+TGG | + | Chr5:101581920-101581939 | None:intergenic | 50.0% | |
| GTAAATGCTGCTGCAATGGC+TGG | - | Chr5:101581707-101581726 | MsG0580029754.01.T01:CDS | 50.0% | |
| GTATGCCACCTCCTCAGTAT+GGG | - | Chr5:101582044-101582063 | MsG0580029754.01.T01:CDS | 50.0% | |
| TAAACCGGAACACCACTTCC+AGG | + | Chr5:101582175-101582194 | None:intergenic | 50.0% | |
| TATCCTGGACATCCTGGACA+AGG | - | Chr5:101581935-101581954 | MsG0580029754.01.T01:CDS | 50.0% | |
| TCAGTATGGGCAGAGACCTA+TGG | - | Chr5:101582057-101582076 | MsG0580029754.01.T01:CDS | 50.0% | |
| TGTCCAGGATGTCCAGGATA+TGG | + | Chr5:101581935-101581954 | None:intergenic | 50.0% | |
| TTCCGGTTTATGGTCCACCT+CGG | - | Chr5:101582185-101582204 | MsG0580029754.01.T01:CDS | 50.0% | |
| ! | ATCATATCCTGGTGGTGCTC+CGG | - | Chr5:101581871-101581890 | MsG0580029754.01.T01:CDS | 50.0% |
| ! | GTGGTTTTCTTACCCTTCGC+CGG | + | Chr5:101581572-101581591 | None:intergenic | 50.0% |
| ! | TTTGGAGCATTTGGTGGAGG+AGG | + | Chr5:101582220-101582239 | None:intergenic | 50.0% |
| !! | GCTTTGGAACGAGATTCCTC+CGG | + | Chr5:101581686-101581705 | None:intergenic | 50.0% |
| !! | TGCAGGTAGAGGTATTCCTC+CGG | - | Chr5:101581748-101581767 | MsG0580029754.01.T01:CDS | 50.0% |
| AGTTGAAGGTCCTCCACCAC+CGG | - | Chr5:101581664-101581683 | MsG0580029754.01.T01:CDS | 55.0% | |
| ATCTGCGGCTGCATCATACC+AGG | + | Chr5:101581836-101581855 | None:intergenic | 55.0% | |
| ATTGGTCGTGCTGCAGGTAG+AGG | - | Chr5:101581737-101581756 | MsG0580029754.01.T01:CDS | 55.0% | |
| CAATTTGGGCAGAGACCAGG+TGG | - | Chr5:101582004-101582023 | MsG0580029754.01.T01:CDS | 55.0% | |
| CCGCCAGTATCATATCCTGG+TGG | - | Chr5:101581863-101581882 | MsG0580029754.01.T01:CDS | 55.0% | |
| CCGGTTATTCAAGCTCAGCC+TGG | - | Chr5:101581773-101581792 | MsG0580029754.01.T01:CDS | 55.0% | |
| CCTCCTGGTCAGATGGTTAG+AGG | - | Chr5:101582088-101582107 | MsG0580029754.01.T01:CDS | 55.0% | |
| CCTCTAACCATCTGACCAGG+AGG | + | Chr5:101582091-101582110 | None:intergenic | 55.0% | |
| CGAAAACTTCCACCGGCGAA+GGG | - | Chr5:101581557-101581576 | MsG0580029754.01.T01:CDS | 55.0% | |
| CGTCCGCCAGTATCATATCC+TGG | - | Chr5:101581860-101581879 | MsG0580029754.01.T01:CDS | 55.0% | |
| CTAACCATCTGACCAGGAGG+AGG | + | Chr5:101582088-101582107 | None:intergenic | 55.0% | |
| GAACCAAACCAAGTGTGCGG+CGG | + | Chr5:101581613-101581632 | None:intergenic | 55.0% | |
| GGCATACCAAATTGCGGAGG+AGG | + | Chr5:101582031-101582050 | None:intergenic | 55.0% | |
| GGTATGCCACCTCCTCAGTA+TGG | - | Chr5:101582043-101582062 | MsG0580029754.01.T01:CDS | 55.0% | |
| GGTCCTCTAACCATCTGACC+AGG | + | Chr5:101582094-101582113 | None:intergenic | 55.0% | |
| GGTGGCATACCAAATTGCGG+AGG | + | Chr5:101582034-101582053 | None:intergenic | 55.0% | |
| TCCTCCTGGAAGTGGTGTTC+CGG | - | Chr5:101582168-101582187 | MsG0580029754.01.T01:CDS | 55.0% | |
| TCGAAAACTTCCACCGGCGA+AGG | - | Chr5:101581556-101581575 | MsG0580029754.01.T01:CDS | 55.0% | |
| TGAGCTTGAATAACCGGCGC+CGG | + | Chr5:101581770-101581789 | None:intergenic | 55.0% | |
| TTGGAACGAGATTCCTCCGG+TGG | + | Chr5:101581683-101581702 | None:intergenic | 55.0% | |
| ! | CGACAAGTTGACGACCGTCT+TGG | + | Chr5:101581478-101581497 | None:intergenic | 55.0% |
| ! | GCAATGGCTGGTCCTGGAAT+TGG | - | Chr5:101581719-101581738 | MsG0580029754.01.T01:CDS | 55.0% |
| ! | GTTTTCTTACCCTTCGCCGG+TGG | + | Chr5:101581569-101581588 | None:intergenic | 55.0% |
| AAGGTCCACCGCAGATGGTG+AGG | - | Chr5:101581954-101581973 | MsG0580029754.01.T01:CDS | 60.0% | |
| AATTGCGGAGGAGGACCACC+TGG | + | Chr5:101582022-101582041 | None:intergenic | 60.0% | |
| ACACCACTTCCAGGAGGAGG+AGG | + | Chr5:101582166-101582185 | None:intergenic | 60.0% | |
| ACCATCTGACCAGGAGGAGG+TGG | + | Chr5:101582085-101582104 | None:intergenic | 60.0% | |
| ACCGGAACACCACTTCCAGG+AGG | + | Chr5:101582172-101582191 | None:intergenic | 60.0% | |
| AGACCGCCGCACACTTGGTT+TGG | - | Chr5:101581607-101581626 | MsG0580029754.01.T01:CDS | 60.0% | |
| AGGTCCACCGCAGATGGTGA+GGG | - | Chr5:101581955-101581974 | MsG0580029754.01.T01:CDS | 60.0% | |
| ATCTGCGGTGGACCTTGTCC+AGG | + | Chr5:101581950-101581969 | None:intergenic | 60.0% | |
| ATGCCTCCTCCTCCTGGAAG+TGG | - | Chr5:101582160-101582179 | MsG0580029754.01.T01:CDS | 60.0% | |
| ATTCCAGGACGAGGAGGAGC+AGG | + | Chr5:101582118-101582137 | None:intergenic | 60.0% | |
| CAAGTGTGCGGCGGTCTTCA+CGG | + | Chr5:101581604-101581623 | None:intergenic | 60.0% | |
| CCATCTGACCAGGAGGAGGT+GGG | + | Chr5:101582084-101582103 | None:intergenic | 60.0% | |
| CCTGCAGCACGACCAATTCC+AGG | + | Chr5:101581734-101581753 | None:intergenic | 60.0% | |
| CCTGGAATTGGTCGTGCTGC+AGG | - | Chr5:101581731-101581750 | MsG0580029754.01.T01:CDS | 60.0% | |
| CGAACAGGACCAGCAAGACC+AGG | + | Chr5:101581794-101581813 | None:intergenic | 60.0% | |
| CTATGCCGCCGGGGCAATTT+GGG | - | Chr5:101581990-101582009 | MsG0580029754.01.T01:CDS | 60.0% | |
| CTCTGCCCATACTGAGGAGG+TGG | + | Chr5:101582052-101582071 | None:intergenic | 60.0% | |
| GAACGAGATTCCTCCGGTGG+TGG | + | Chr5:101581680-101581699 | None:intergenic | 60.0% | |
| GCTGGTCCTGTTCGTGGTGT+AGG | - | Chr5:101581800-101581819 | MsG0580029754.01.T01:CDS | 60.0% | |
| GGAACACCACTTCCAGGAGG+AGG | + | Chr5:101582169-101582188 | None:intergenic | 60.0% | |
| GGACCTTGTCCAGGATGTCC+AGG | + | Chr5:101581941-101581960 | None:intergenic | 60.0% | |
| GGCCGAGGTGGACCATAAAC+CGG | + | Chr5:101582190-101582209 | None:intergenic | 60.0% | |
| GGCTGCATCATACCAGGAGC+AGG | + | Chr5:101581830-101581849 | None:intergenic | 60.0% | |
| GGGCAATTTGGGCAGAGACC+AGG | - | Chr5:101582001-101582020 | MsG0580029754.01.T01:CDS | 60.0% | |
| GGTCCACCTACACCACGAAC+AGG | + | Chr5:101581809-101581828 | None:intergenic | 60.0% | |
| GGTCCTGTTCGTGGTGTAGG+TGG | - | Chr5:101581803-101581822 | MsG0580029754.01.T01:CDS | 60.0% | |
| GGTCTCTGCCCAAATTGCCC+CGG | + | Chr5:101582001-101582020 | None:intergenic | 60.0% | |
| GGTCTCTGCCCATACTGAGG+AGG | + | Chr5:101582055-101582074 | None:intergenic | 60.0% | |
| GGTCTTGCTGGTCCTGTTCG+TGG | - | Chr5:101581794-101581813 | MsG0580029754.01.T01:CDS | 60.0% | |
| GGTGGTCCTCCTCCGCAATT+TGG | - | Chr5:101582022-101582041 | MsG0580029754.01.T01:CDS | 60.0% | |
| GTTATGCGTCCGCCTGGTCA+AGG | - | Chr5:101581893-101581912 | MsG0580029754.01.T01:CDS | 60.0% | |
| GTTTATGGTCCACCTCGGCC+TGG | - | Chr5:101582190-101582209 | MsG0580029754.01.T01:CDS | 60.0% | |
| TGACCAGGCGGACGCATAAC+CGG | + | Chr5:101581893-101581912 | None:intergenic | 60.0% | |
| TGACCAGGTGGACCTTGACC+AGG | + | Chr5:101581908-101581927 | None:intergenic | 60.0% | |
| TGGACAAGGTCCACCGCAGA+TGG | - | Chr5:101581949-101581968 | MsG0580029754.01.T01:CDS | 60.0% | |
| ! | ACTGGCGGACGCGAAATCTG+CGG | + | Chr5:101581851-101581870 | None:intergenic | 60.0% |
| ! | TTTGGTGGAGGAGGCATGCC+AGG | + | Chr5:101582211-101582230 | None:intergenic | 60.0% |
| !! | CAAGCTCAGCCTGGTCTTGC+TGG | - | Chr5:101581782-101581801 | MsG0580029754.01.T01:CDS | 60.0% |
| !! | TAGAGGTATTCCTCCGGCGC+CGG | - | Chr5:101581754-101581773 | MsG0580029754.01.T01:CDS | 60.0% |
| AATTGCCCCGGCGGCATAGG+AGG | + | Chr5:101581989-101582008 | None:intergenic | 65.0% | |
| CCAAATTGCCCCGGCGGCAT+AGG | + | Chr5:101581992-101582011 | None:intergenic | 65.0% | |
| CCAGGTGGACCTTGACCAGG+CGG | + | Chr5:101581905-101581924 | None:intergenic | 65.0% | |
| CCCACCTCCTCCTGGTCAGA+TGG | - | Chr5:101582081-101582100 | MsG0580029754.01.T01:CDS | 65.0% | |
| CCTATGCCGCCGGGGCAATT+TGG | - | Chr5:101581989-101582008 | MsG0580029754.01.T01:CDS | 65.0% | |
| CCTGGAATGCCTCCTCCTCC+TGG | - | Chr5:101582154-101582173 | MsG0580029754.01.T01:CDS | 65.0% | |
| CGTGAAGACCGCCGCACACT+TGG | - | Chr5:101581602-101581621 | MsG0580029754.01.T01:CDS | 65.0% | |
| CTCTGCCCAAATTGCCCCGG+CGG | + | Chr5:101581998-101582017 | None:intergenic | 65.0% | |
| GGCTGCATTCCAGGACGAGG+AGG | + | Chr5:101582124-101582143 | None:intergenic | 65.0% | |
| GGTCCACCGCAGATGGTGAG+GGG | - | Chr5:101581956-101581975 | MsG0580029754.01.T01:CDS | 65.0% | |
| GGTGGACCCCTCACCATCTG+CGG | + | Chr5:101581965-101581984 | None:intergenic | 65.0% | |
| GGTGGCTGCATTCCAGGACG+AGG | + | Chr5:101582127-101582146 | None:intergenic | 65.0% | |
| GGTGTAGGTGGACCTGCTCC+TGG | - | Chr5:101581815-101581834 | MsG0580029754.01.T01:CDS | 65.0% | |
| TGAAGGTCCTCCACCACCGG+AGG | - | Chr5:101581667-101581686 | MsG0580029754.01.T01:CDS | 65.0% | |
| ! | CGAGATTCCTCCGGTGGTGG+AGG | + | Chr5:101581677-101581696 | None:intergenic | 65.0% |
| ! | CGCATAACCGGAGCACCACC+AGG | + | Chr5:101581881-101581900 | None:intergenic | 65.0% |
| ! | GCTGCTGCAATGGCTGGTCC+TGG | - | Chr5:101581713-101581732 | MsG0580029754.01.T01:CDS | 65.0% |
| ! | GCTTGAATAACCGGCGCCGG+AGG | + | Chr5:101581767-101581786 | None:intergenic | 65.0% |
| !! | CCAGGAGGAGGAGGCATTCC+AGG | + | Chr5:101582157-101582176 | None:intergenic | 65.0% |
| !! | GGAGGAGGCATTCCAGGACG+AGG | + | Chr5:101582151-101582170 | None:intergenic | 65.0% |
| !! | GGAGGCATTCCAGGACGAGG+CGG | + | Chr5:101582148-101582167 | None:intergenic | 65.0% |
| ATGCAGCCACCGCCTCGTCC+TGG | - | Chr5:101582136-101582155 | MsG0580029754.01.T01:CDS | 70.0% | |
| CCAGGACGAGGAGGAGCAGG+AGG | + | Chr5:101582115-101582134 | None:intergenic | 70.0% | |
| CCAGGAGGAGGTGGGCCCAT+AGG | + | Chr5:101582076-101582095 | None:intergenic | 70.0% | |
| CCGCCTGGTCAAGGTCCACC+TGG | - | Chr5:101581902-101581921 | MsG0580029754.01.T01:CDS | 70.0% | |
| CCTATGGGCCCACCTCCTCC+TGG | - | Chr5:101582073-101582092 | MsG0580029754.01.T01:CDS | 70.0% | |
| CCTCCTGCTCCTCCTCGTCC+TGG | - | Chr5:101582112-101582131 | MsG0580029754.01.T01:CDS | 70.0% | |
| CGAGGCGGTGGCTGCATTCC+AGG | + | Chr5:101582133-101582152 | None:intergenic | 70.0% | |
| GCGGTCTTCACGGTCGCCGT+CGG | + | Chr5:101581594-101581613 | None:intergenic | 70.0% | |
| GCTCCGGTTATGCGTCCGCC+TGG | - | Chr5:101581887-101581906 | MsG0580029754.01.T01:CDS | 70.0% | |
| GGACCCCTCACCATCTGCGG+TGG | + | Chr5:101581962-101581981 | None:intergenic | 70.0% | |
| GGCATTCCAGGACGAGGCGG+TGG | + | Chr5:101582145-101582164 | None:intergenic | 70.0% | |
| GTCTTCACGGTCGCCGTCGG+TGG | + | Chr5:101581591-101581610 | None:intergenic | 70.0% | |
| TCCACCGCCTCCTATGCCGC+CGG | - | Chr5:101581979-101581998 | MsG0580029754.01.T01:CDS | 70.0% | |
| CACCGCCTCCTATGCCGCCG+GGG | - | Chr5:101581981-101582000 | MsG0580029754.01.T01:CDS | 75.0% | |
| CCACCGCCTCCTATGCCGCC+GGG | - | Chr5:101581980-101581999 | MsG0580029754.01.T01:CDS | 75.0% | |
| TGCCCCGGCGGCATAGGAGG+CGG | + | Chr5:101581986-101582005 | None:intergenic | 75.0% | |
| ! | GGAGGAGGCATGCCAGGCCG+AGG | + | Chr5:101582205-101582224 | None:intergenic | 75.0% |
| ! | GGAGGCATGCCAGGCCGAGG+TGG | + | Chr5:101582202-101582221 | None:intergenic | 75.0% |
| ! | CCCGGCGGCATAGGAGGCGG+TGG | + | Chr5:101581983-101582002 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 101581461 | 101582258 | 101581461 | ID=MsG0580029754.01;Name=MsG0580029754.01 |
| Chr5 | mRNA | 101581461 | 101582258 | 101581461 | ID=MsG0580029754.01.T01;Parent=MsG0580029754.01;Name=MsG0580029754.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|265 |
| Chr5 | exon | 101581461 | 101582258 | 101581461 | ID=MsG0580029754.01.T01:exon:8760;Parent=MsG0580029754.01.T01 |
| Chr5 | CDS | 101581461 | 101582258 | 101581461 | ID=MsG0580029754.01.T01:cds;Parent=MsG0580029754.01.T01 |
| Gene Sequence |
| Protein sequence |
