AlfalfaGEDB | MsG0380016805.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016805.01

KEGG: K02998
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0015935
PFAM: PF00318

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016805.01.T01	AES72823.1	98.893	271	3	0	326	596	1	271	0	562

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016805.01.T01	O65751	89.299	271	28	1	326	595	1	271	1.71E-177	507

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016805.01.T01	G7JB02	98.893	271	3	0	326	596	1	271	0.0	562

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000097.01	MsG0380016805.01	0.813913	2.012201e-51	1.331031e-48
MsG0180001169.01	MsG0380016805.01	0.864709	1.000253e-64	3.170857e-61
MsG0180001829.01	MsG0380016805.01	0.820061	8.366961e-53	6.552209e-50
MsG0180002738.01	MsG0380016805.01	0.840429	8.740750e-58	1.244706e-54
MsG0180003585.01	MsG0380016805.01	0.853034	3.119752e-61	6.649361e-58
MsG0180003623.01	MsG0380016805.01	0.894374	2.617974e-75	2.596007e-71
MsG0180003897.01	MsG0380016805.01	0.856171	3.852083e-62	9.111746e-59
MsG0180004503.01	MsG0380016805.01	0.917628	4.212305e-86	1.227713e-81
MsG0280006301.01	MsG0380016805.01	0.860487	1.995540e-63	5.464217e-60
MsG0280006747.01	MsG0380016805.01	0.854239	1.404886e-61	3.117550e-58

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016805.01.T01	MTR_3g095810	98.893	271	3	0	326	596	1	271	0.0	562
MsG0380016805.01.T01	MTR_3g095810	98.889	270	3	0	326	595	1	270	0.0	559
MsG0380016805.01.T01	MTR_3g095800	82.524	309	38	4	1	298	2	305	4.47e-176	501
MsG0380016805.01.T01	MTR_7g107400	94.717	265	13	1	332	595	3	267	1.47e-174	497
MsG0380016805.01.T01	MTR_6g044600	40.426	141	66	2	178	314	773	899	3.69e-23	105
MsG0380016805.01.T01	MTR_1g099270	26.974	304	190	9	6	294	53	339	4.02e-23	101
MsG0380016805.01.T01	MTR_1g099270	26.974	304	190	9	6	294	53	339	4.08e-23	102
MsG0380016805.01.T01	MTR_6g034375	36.429	140	72	2	178	314	698	823	9.50e-19	90.9
MsG0380016805.01.T01	MTR_6g034375	36.429	140	72	2	178	314	753	878	1.20e-18	90.9
MsG0380016805.01.T01	MTR_5g098320	36.667	120	75	1	176	294	76	195	4.58e-18	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016805.01.T01	AT3G04770	79.389	262	42	5	332	589	9	262	8.23e-146	423
MsG0380016805.01.T01	AT1G72370	82.591	247	40	3	326	569	1	247	9.31e-142	413
MsG0380016805.01.T01	AT1G72370	82.591	247	40	3	326	569	1	247	1.05e-141	413
MsG0380016805.01.T01	AT3G04770	88.832	197	22	0	332	528	9	205	1.22e-127	379
MsG0380016805.01.T01	AT1G43770	37.209	129	76	3	173	296	281	409	6.27e-20	93.2
MsG0380016805.01.T01	AT1G43770	37.209	129	76	3	173	296	281	409	6.27e-20	93.2
MsG0380016805.01.T01	AT3G02890	33.121	157	97	4	148	296	603	759	3.97e-13	73.2
MsG0380016805.01.T01	AT3G02890	32.484	157	98	4	148	296	662	818	6.44e-13	72.4
MsG0380016805.01.T01	AT3G02890	32.484	157	98	4	148	296	662	818	7.21e-13	72.4
MsG0380016805.01.T01	AT5G16680	33.588	131	75	4	175	296	828	955	2.54e-12	70.9

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Find 139 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTATACGCTACTTATT+AGG	0.319796	3:-88123798	None:intergenic
AAATGTTCTTTACCAGCTTC+TGG	0.204965	3:-88128521	None:intergenic
AACAAGGGAAAGCATAGCAT+CGG	0.599533	3:+88128089	MsG0380016805.01.T01:CDS
AACTCTGGATACTGCAGTAA+CGG	0.564251	3:-88124207	None:intergenic
AACTGGGCTGCCCCAGAAGC+TGG	0.477922	3:+88128509	MsG0380016805.01.T01:CDS
AACTTGCATTTGATTGGTAA+AGG	0.474388	3:-88127763	None:intergenic
AAGATCCACCAGGATGATAA+TGG	0.347379	3:+88123838	MsG0380016805.01.T01:CDS
AAGTAACCCAAAATGCAAAA+CGG	0.583078	3:+88123894	MsG0380016805.01.T01:CDS
AAGTAGCATACCTTTCATAC+TGG	0.330845	3:-88124639	None:intergenic
AATGACATACGCCTTTCATC+CGG	0.495585	3:-88124846	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACATGTTTGGTAAAAG+AGG	+	Chr3:88120911-88120930	MsG0380016805.01.T01:intron	30.0%
AACACAAGGTGTAACTTAAT+TGG	-	Chr3:88127439-88127458	None:intergenic	30.0%
AACTTGCATTTGATTGGTAA+AGG	-	Chr3:88127766-88127785	None:intergenic	30.0%
AAGACATGTTTGGTAAAAGA+GGG	+	Chr3:88120912-88120931	MsG0380016805.01.T01:intron	30.0%
AAGTAACCCAAAATGCAAAA+CGG	+	Chr3:88123894-88123913	MsG0380016805.01.T01:CDS	30.0%
AATCAAAGCCAAGAAAATAG+TGG	+	Chr3:88124985-88125004	MsG0380016805.01.T01:intron	30.0%
ACACAAGGTGTAACTTAATT+GGG	-	Chr3:88127438-88127457	None:intergenic	30.0%
ACATTATTGTTCAATCTGCA+AGG	+	Chr3:88127661-88127680	MsG0380016805.01.T01:CDS	30.0%
ACCAGCAATATAAATTTGGT+TGG	+	Chr3:88123208-88123227	MsG0380016805.01.T01:intron	30.0%
AGATTGAACAATAATGTCCT+GGG	-	Chr3:88127658-88127677	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	88120466	88128553	88120466	ID=MsG0380016805.01;Name=MsG0380016805.01
Chr3	mRNA	88120466	88128553	88120466	ID=MsG0380016805.01.T01;Parent=MsG0380016805.01;Name=MsG0380016805.01.T01;_AED=0.49;_eAED=0.52;_QI=0\|0\|0\|1\|0.85\|0.75\|8\|0\|602
Chr3	exon	88120466	88120501	88120466	ID=MsG0380016805.01.T01:exon:22705;Parent=MsG0380016805.01.T01
Chr3	exon	88123754	88124274	88123754	ID=MsG0380016805.01.T01:exon:22706;Parent=MsG0380016805.01.T01
Chr3	exon	88124438	88124650	88124438	ID=MsG0380016805.01.T01:exon:22707;Parent=MsG0380016805.01.T01
Chr3	exon	88124734	88124858	88124734	ID=MsG0380016805.01.T01:exon:22708;Parent=MsG0380016805.01.T01
Chr3	exon	88126661	88126882	88126661	ID=MsG0380016805.01.T01:exon:22709;Parent=MsG0380016805.01.T01
Chr3	exon	88127577	88127839	88127577	ID=MsG0380016805.01.T01:exon:22710;Parent=MsG0380016805.01.T01
Chr3	exon	88127993	88128190	88127993	ID=MsG0380016805.01.T01:exon:22711;Parent=MsG0380016805.01.T01
Chr3	exon	88128323	88128553	88128323	ID=MsG0380016805.01.T01:exon:22712;Parent=MsG0380016805.01.T01
Chr3	CDS	88120466	88120501	88120466	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01
Chr3	CDS	88123754	88124274	88123754	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01
Chr3	CDS	88124438	88124650	88124438	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01
Chr3	CDS	88124734	88124858	88124734	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01
Chr3	CDS	88126661	88126882	88126661	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01
Chr3	CDS	88127577	88127839	88127577	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01
Chr3	CDS	88127993	88128190	88127993	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01
Chr3	CDS	88128323	88128553	88128323	ID=MsG0380016805.01.T01:cds;Parent=MsG0380016805.01.T01

Gene Sequence

>MsG0380016805.01.T01

ATGGTTCCTCAACCGTGCCTTGTTGCCGCTGAAAAGATGTTTTGTGTAACATTTTTGTTGCTTGATATTTGTAAAATATGCCTAATAAGTAGCGTATACATTTGCAGTTATTGTTTAGATAAGATCCACCAGGATGATAATGGGACAGTAATCTGGAAATGCGAGGAGTGTGCTCCAAGTAACCCAAAATGCAAAACGGAACCGTTACGAAAAAGTGAACGCATAAGTTATGCAACTGATGCTAAGTATAAAAGGATGATAATGAAAAAGAAGAGTGGTGTAGTTAGAAAACAACCACTTGTCAGATCAAATGAAGGTGAAAGTTTTGGATGCCTTGCCAAAAAGGACACTGAGAAGATACTGCCAATCCTTGAGAACGAAAATGTGTTTTTTAAGCAGCCTGAATCACCTAAAGATCCTTCGAATATGTCATCTGACATGCAGGCAATGGAATGTGAGATATATACAGAGTCTGAAGTCATAATGCCTCCGTTACTGCAGTATCCAGAGTTTGACAAAAATAGCCGTGCTCAGCCACTAAGTGATCCGATTTGGACGGGGCAATTTAGAATGCACAATGAAACACATTTTCATCTTACTGCATATATATCAAGTAAAGCTTCCCCAAAAGTGAATTCGGCAGTAACAGTTCTCCCTGAACTGCTTGATTTAGAGATGTTATCGAAGCGTATCATTTGGCCTCAGAGTTTTGCTGACCATCCACCTAATGGTGATTGTATTGGGCTCTATTTTTTCCCCCAGTATGAAAGGGATGAGATGATCTTTGATCGTGTAATGGACAACATGATTGAACAAGATAAGGCTCTCAAAGCAGTCATTAACAACCTGGAACTCTTAATATTTTCCTCGCATTTATTACCTCCGGATGAAAGGCCTGCCAAATTGTTATCACAGAGTGCCGCATCCAAGTTTCGGAGATTCGCTCCCGTCGCCGGCAGTAGACAGCATTCAATCATGGCTACCGAACAACTTTCATCCCGTCAGCTCTCTCAAAAAGAAGCTGACATCCAGATGATGTTGGCTGCTGATGTCCACCTCGGCACTAAGAACTGCGACTTCCAAATGGAACGTTATTGCTTCAAACGCCGCAACGATGGTATTTATATCATTAATCTTGGAAAAACTTGGGAGAAACTTCAACTAGCTGCCAGGGTCATCGTTGCAATCGAGAACCCCCAGGACATTATTGTTCAATCTGCAAGGCCTTATGGACAGAGAGCCGTTCTTAAGTTTGCTCAGTACACTGGAGCTAATGCTATTGCAGGTAGACACACTCCTGGAACCTTTACCAATCAAATGCAAGTTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACTGATCCTAGAACTGACCATCAGCCCATCAAGGAAGCTGCTCTTGGAAATATTCCAACTATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCCGCTAACAACAAGGGAAAGCATAGCATCGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCAGGTCTTAAGTGGGATGTGATGGTTGATCTATTCTTTTATAGAGAACCCGAAGAGGCCAAGGAGCAAGAGGAGGATGAAGTTCCTGCTCTAGATTATGCCATTGCTGACTTCAATGCTGGTGGTCCATCTGATGGTCAGTGGCCTACTGCAATTGAGCAGCCATGGACTGATGCAGCACCACAGCCTATTCCAGCAGCTCCTGGTGTCAACTGGGCTGCCCCAGAAGCTGGTAAAGAACATTTTTTTTTTTAA

Protein sequence

>MsG0380016805.01.T01

MVPQPCLVAAEKMFCVTFLLLDICKICLISSVYICSYCLDKIHQDDNGTVIWKCEECAPSNPKCKTEPLRKSERISYATDAKYKRMIMKKKSGVVRKQPLVRSNEGESFGCLAKKDTEKILPILENENVFFKQPESPKDPSNMSSDMQAMECEIYTESEVIMPPLLQYPEFDKNSRAQPLSDPIWTGQFRMHNETHFHLTAYISSKASPKVNSAVTVLPELLDLEMLSKRIIWPQSFADHPPNGDCIGLYFFPQYERDEMIFDRVMDNMIEQDKALKAVINNLELLIFSSHLLPPDERPAKLLSQSAASKFRRFAPVAGSRQHSIMATEQLSSRQLSQKEADIQMMLAADVHLGTKNCDFQMERYCFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQVSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPALDYAIADFNAGGPSDGQWPTAIEQPWTDAAPQPIPAAPGVNWAAPEAGKEHFFF*