AlfalfaGEDB | MsG0680030634.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030634.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030634.01.T01	XP_013450888.1	93.22	59	4	0	1	59	68	126	1.06E-29	114

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030634.01.T01	Q67YE6	55.932	59	26	0	1	59	68	126	2.70E-15	70.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030634.01.T01	A0A396H9D4	93.220	59	4	0	1	59	113	171	1.26e-29	115

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004777.01	MsG0680030634.01	0.828232	1.007869e-54	9.957771e-52
MsG0280010521.01	MsG0680030634.01	0.808199	3.483347e-50	1.979297e-47
MsG0480023518.01	MsG0680030634.01	0.844861	5.813856e-59	9.511846e-56
MsG0580025440.01	MsG0680030634.01	0.804931	1.704499e-49	8.901594e-47
MsG0680030634.01	MsG0780041177.01	0.815549	8.731441e-52	6.038313e-49
MsG0680030634.01	MsG0880045818.01	0.812645	3.819599e-51	2.441892e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030634.01.T01	MTR_6g008210	93.220	59	4	0	1	59	68	126	1.29e-33	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030634.01.T01	AT3G28210	55.932	59	26	0	1	59	68	126	2.75e-16	70.1
MsG0680030634.01.T01	AT3G28210	55.932	59	26	0	1	59	68	126	2.75e-16	70.1

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Find 22 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCATGATCAGCAGCAAAA+CGG	0.580672	6:-6433145	None:intergenic
AATCTCCTTGCAACGCTTCA+CGG	0.405276	6:-6433064	None:intergenic
ATCTCCTTGCAACGCTTCAC+GGG	0.399170	6:-6433063	None:intergenic
ATGGAGATCACAGGCAACAT+GGG	0.594572	6:+6432961	MsG0680030634.01.T01:CDS
CAACATGGGAGAAAACGAAG+AGG	0.737384	6:+6432975	MsG0680030634.01.T01:CDS
CAACGCTTCACGGGGCAAGT+TGG	0.457687	6:-6433054	None:intergenic
CAACTGCTGTTGCAAATGCA+AGG	0.582464	6:+6433197	MsG0680030634.01.T01:CDS
CAGCAGCAAAACGGTGCTTG+AGG	0.584113	6:-6433136	None:intergenic
GCCTGTGATCTCCATAGACA+TGG	0.623654	6:-6432953	None:intergenic
GCTGATCATGCTTGTAGTAG+AGG	0.580042	6:+6433155	MsG0680030634.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGAAACATCGTAGTTCA+GGG	+	Chr6:6433004-6433023	MsG0680030634.01.T01:CDS	30.0%
TTAAAGAAACATCGTAGTTC+AGG	+	Chr6:6433003-6433022	MsG0680030634.01.T01:CDS	30.0%
TCTGTAAAACTTGCCACATT+AGG	+	Chr6:6433109-6433128	MsG0680030634.01.T01:CDS	35.0%
TTGGTTTCTTCTTCTTGCTA+GGG	-	Chr6:6433038-6433057	None:intergenic	35.0%
AAGCATGATCAGCAGCAAAA+CGG	-	Chr6:6433148-6433167	None:intergenic	40.0%
AATCTCCTTGCAACGCTTCA+CGG	-	Chr6:6433067-6433086	None:intergenic	45.0%
ATGGAGATCACAGGCAACAT+GGG	+	Chr6:6432961-6432980	MsG0680030634.01.T01:CDS	45.0%
CAACATGGGAGAAAACGAAG+AGG	+	Chr6:6432975-6432994	MsG0680030634.01.T01:CDS	45.0%
CAACTGCTGTTGCAAATGCA+AGG	+	Chr6:6433197-6433216	MsG0680030634.01.T01:CDS	45.0%
GCTGATCATGCTTGTAGTAG+AGG	+	Chr6:6433155-6433174	MsG0680030634.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	6432955	6433227	6432955	ID=MsG0680030634.01;Name=MsG0680030634.01
Chr6	mRNA	6432955	6433227	6432955	ID=MsG0680030634.01.T01;Parent=MsG0680030634.01;Name=MsG0680030634.01.T01;_AED=0.49;_eAED=0.58;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|90
Chr6	exon	6432955	6433227	6432955	ID=MsG0680030634.01.T01:exon:6192;Parent=MsG0680030634.01.T01
Chr6	CDS	6432955	6433227	6432955	ID=MsG0680030634.01.T01:cds;Parent=MsG0680030634.01.T01

Gene Sequence	>MsG0680030634.01.T01 ATGTCTATGGAGATCACAGGCAACATGGGAGAAAACGAAGAGGTGATCTTAAAGAAACATCGTAGTTCAGGGAAGTGTGACCCTAGCAAGAAGAAGAAACCAACTTGCCCCGTGAAGCGTTGCAAGGAGATTTTGACGTTTTCTAACACGAGTGTCTGTAAAACTTGCCACATTAGGTGTGCCTCAAGCACCGTTTTGCTGCTGATCATGCTTGTAGTAGAGGAATTCATCTTCCTCATCAACAACTGCTGTTGCAAATGCAAGGACAAATAA
Protein sequence	>MsG0680030634.01.T01 MSMEITGNMGENEEVILKKHRSSGKCDPSKKKKPTCPVKRCKEILTFSNTSVCKTCHIRCASSTVLLLIMLVVEEFIFLINNCCCKCKDK*