AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004777.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004777.01.T01 MTR_1g086790 89.394 330 27 3 1 327 1 325 0.0 524
MsG0180004777.01.T01 MTR_7g109800 58.974 312 80 17 27 327 21 295 1.09e-88 268
MsG0180004777.01.T01 MTR_2g033820 47.923 313 123 10 44 327 71 372 6.86e-56 186
MsG0180004777.01.T01 MTR_5g043880 47.236 199 70 5 134 323 98 270 4.34e-45 155
MsG0180004777.01.T01 MTR_4g094588 46.119 219 91 7 114 324 133 332 9.35e-44 153
MsG0180004777.01.T01 MTR_5g091390 80.769 78 15 0 146 223 143 220 3.58e-41 145
MsG0180004777.01.T01 MTR_4g122530 39.301 229 74 7 144 319 192 408 3.70e-38 140
MsG0180004777.01.T01 MTR_7g079010 48.387 155 62 4 67 217 58 198 9.30e-35 126
MsG0180004777.01.T01 MTR_3g104750 66.667 78 26 0 141 218 85 162 1.21e-31 116
MsG0180004777.01.T01 MTR_7g028415 71.429 70 20 0 148 217 81 150 5.04e-31 115
MsG0180004777.01.T01 MTR_7g028710 71.429 70 20 0 148 217 81 150 5.04e-31 115
MsG0180004777.01.T01 MTR_3g095080 68.493 73 23 0 144 216 128 200 6.90e-31 116
MsG0180004777.01.T01 MTR_3g095080 68.493 73 23 0 144 216 152 224 7.90e-31 117
MsG0180004777.01.T01 MTR_1g015140 56.522 92 40 0 127 218 69 160 1.05e-30 114
MsG0180004777.01.T01 MTR_5g042920 37.879 198 104 6 37 219 186 379 2.52e-30 119
MsG0180004777.01.T01 MTR_5g042920 58.065 62 23 2 160 219 151 211 6.78e-16 78.6
MsG0180004777.01.T01 MTR_8g007270 62.651 83 31 0 134 216 128 210 5.62e-30 114
MsG0180004777.01.T01 MTR_4g082580 48.855 131 52 3 104 219 207 337 1.60e-29 116
MsG0180004777.01.T01 MTR_4g082580 53.125 64 30 0 160 223 145 208 1.87e-16 79.7
MsG0180004777.01.T01 MTR_7g011820 61.728 81 31 0 145 225 395 475 2.04e-29 118
MsG0180004777.01.T01 MTR_7g011820 46.809 94 34 2 145 223 198 290 2.37e-17 83.2
MsG0180004777.01.T01 MTR_8g092140 67.568 74 23 1 144 216 143 216 3.84e-29 112
MsG0180004777.01.T01 MTR_3g056100 51.887 106 50 1 115 220 214 318 8.43e-29 115
MsG0180004777.01.T01 MTR_3g056100 55.072 69 30 1 160 228 99 166 1.00e-16 80.9
MsG0180004777.01.T01 MTR_3g056100 51.887 106 50 1 115 220 227 331 1.01e-28 115
MsG0180004777.01.T01 MTR_3g056100 55.072 69 30 1 160 228 99 166 9.99e-17 80.9
MsG0180004777.01.T01 MTR_3g056100 51.887 106 50 1 115 220 358 462 1.79e-28 115
MsG0180004777.01.T01 MTR_3g056100 56.522 69 28 2 160 228 243 309 1.35e-16 80.9
MsG0180004777.01.T01 MTR_3g056100 51.887 106 50 1 115 220 371 475 1.93e-28 115
MsG0180004777.01.T01 MTR_3g056100 56.522 69 28 2 160 228 243 309 1.36e-16 80.9
MsG0180004777.01.T01 MTR_5g094430 56.977 86 37 0 140 225 210 295 4.37e-28 113
MsG0180004777.01.T01 MTR_5g094430 50.000 84 41 1 145 228 51 133 6.94e-17 81.3
MsG0180004777.01.T01 MTR_5g094430 56.977 86 37 0 140 225 232 317 5.91e-28 113
MsG0180004777.01.T01 MTR_5g094430 57.353 68 28 1 161 228 89 155 7.22e-17 81.3
MsG0180004777.01.T01 MTR_5g094430 56.977 86 37 0 140 225 344 429 1.20e-27 113
MsG0180004777.01.T01 MTR_5g094430 50.000 84 41 1 145 228 185 267 1.18e-16 80.9
MsG0180004777.01.T01 MTR_3g009470 50.459 109 53 1 117 225 453 560 1.23e-27 113
MsG0180004777.01.T01 MTR_3g009470 37.410 139 83 2 97 232 214 351 1.06e-18 87.4
MsG0180004777.01.T01 MTR_3g095040 44.737 114 59 1 113 222 67 180 6.75e-27 105
MsG0180004777.01.T01 MTR_1g077780 45.918 98 53 0 144 241 46 143 1.51e-26 102
MsG0180004777.01.T01 MTR_8g092010 42.857 112 64 0 111 222 59 170 1.80e-26 103
MsG0180004777.01.T01 MTR_3g031220 53.846 91 42 0 144 234 349 439 2.94e-26 108
MsG0180004777.01.T01 MTR_3g031220 44.444 81 40 2 143 223 185 260 2.88e-15 76.6
MsG0180004777.01.T01 MTR_7g100510 47.115 104 55 0 116 219 317 420 5.50e-26 107
MsG0180004777.01.T01 MTR_7g100510 46.341 82 38 2 161 242 190 265 4.71e-16 79.0
MsG0180004777.01.T01 MTR_8g096730 46.875 96 45 1 128 217 32 127 6.48e-26 101
MsG0180004777.01.T01 MTR_7g071120 48.485 99 43 1 144 234 308 406 8.44e-26 107
MsG0180004777.01.T01 MTR_7g071120 56.250 64 27 1 160 223 166 228 1.48e-16 80.5
MsG0180004777.01.T01 MTR_4g130900 34.810 158 88 1 103 245 302 459 3.44e-25 105
MsG0180004777.01.T01 MTR_5g074400 46.429 112 56 1 118 225 374 485 3.64e-25 106
MsG0180004777.01.T01 MTR_5g074400 55.000 60 26 1 160 219 243 301 1.73e-14 74.7
MsG0180004777.01.T01 MTR_7g080020 47.573 103 53 1 119 220 451 553 4.82e-25 106
MsG0180004777.01.T01 MTR_7g080020 59.375 64 25 1 160 223 280 342 1.74e-17 83.6
MsG0180004777.01.T01 MTR_7g080000 44.737 114 58 2 109 220 382 492 8.69e-25 105
MsG0180004777.01.T01 MTR_7g080000 55.385 65 28 1 159 223 233 296 1.08e-16 81.3
MsG0180004777.01.T01 MTR_4g013260 57.895 76 32 0 144 219 320 395 1.16e-24 104
MsG0180004777.01.T01 MTR_4g013260 54.688 64 29 0 160 223 184 247 1.20e-17 84.0
MsG0180004777.01.T01 MTR_2g105060 54.545 77 32 2 147 220 79 155 3.23e-22 94.0
MsG0180004777.01.T01 MTR_3g053330 32.335 167 97 4 103 256 182 345 3.48e-22 97.1
MsG0180004777.01.T01 MTR_2g105060 54.545 77 32 2 147 220 154 230 6.03e-22 94.7
MsG0180004777.01.T01 MTR_7g062220 66.667 57 19 0 160 216 124 180 6.36e-22 94.7
MsG0180004777.01.T01 MTR_2g088000 40.517 116 65 2 144 258 333 445 1.23e-21 95.9
MsG0180004777.01.T01 MTR_4g132430 51.948 77 36 1 144 219 111 187 1.51e-21 94.0
MsG0180004777.01.T01 MTR_4g132430 51.948 77 36 1 144 219 245 321 2.92e-21 94.4
MsG0180004777.01.T01 MTR_2g023930 51.948 77 36 1 144 219 289 365 8.41e-21 93.2
MsG0180004777.01.T01 MTR_6g086555 46.835 79 41 1 146 223 192 270 1.26e-20 92.0
MsG0180004777.01.T01 MTR_7g110720 39.316 117 67 2 107 219 160 276 1.91e-20 91.7
MsG0180004777.01.T01 MTR_7g110720 40.952 105 61 1 116 219 145 249 2.28e-20 91.3
MsG0180004777.01.T01 MTR_5g097490 55.263 76 34 0 145 220 237 312 2.63e-20 90.9
MsG0180004777.01.T01 MTR_5g097490 40.909 110 58 4 160 265 92 198 1.83e-13 70.9
MsG0180004777.01.T01 MTR_4g094412 50.649 77 37 1 144 219 218 294 6.22e-20 90.5
MsG0180004777.01.T01 MTR_4g094412 50.649 77 37 1 144 219 227 303 6.61e-20 90.5
MsG0180004777.01.T01 MTR_2g032030 33.987 153 85 6 91 228 184 335 9.65e-20 89.7
MsG0180004777.01.T01 MTR_2g032030 55.072 69 29 2 161 228 268 335 1.33e-19 89.7
MsG0180004777.01.T01 MTR_7g109600 52.055 73 34 1 161 232 54 126 2.18e-19 86.7
MsG0180004777.01.T01 MTR_4g007060 56.452 62 26 1 159 219 127 188 2.64e-19 86.7
MsG0180004777.01.T01 MTR_8g098945 50.704 71 33 2 159 228 128 197 2.79e-19 86.3
MsG0180004777.01.T01 MTR_1g013760 40.594 101 55 2 148 243 124 224 3.48e-19 86.3
MsG0180004777.01.T01 MTR_8g028565 52.174 69 31 2 161 228 156 223 3.83e-19 87.0
MsG0180004777.01.T01 MTR_4g007060 56.452 62 26 1 159 219 161 222 4.21e-19 86.7
MsG0180004777.01.T01 MTR_4g107970 39.831 118 66 3 107 219 121 238 5.15e-19 88.2
MsG0180004777.01.T01 MTR_5g016610 45.783 83 44 1 135 216 174 256 6.54e-19 85.5
MsG0180004777.01.T01 MTR_2g045360 35.294 153 75 5 144 291 195 328 7.72e-19 87.0
MsG0180004777.01.T01 MTR_7g009730 43.810 105 53 2 119 217 173 277 8.12e-19 87.4
MsG0180004777.01.T01 MTR_4g107970 39.831 118 66 3 107 219 198 315 8.63e-19 87.4
MsG0180004777.01.T01 MTR_1g009613 38.000 100 61 1 118 216 220 319 1.02e-18 85.9
MsG0180004777.01.T01 MTR_3g009470 54.795 73 32 1 160 232 280 351 1.66e-18 86.7
MsG0180004777.01.T01 MTR_3g009470 50.000 64 31 1 117 180 453 515 5.54e-11 63.9
MsG0180004777.01.T01 MTR_7g079040 38.938 113 56 4 129 236 130 234 2.93e-18 84.3
MsG0180004777.01.T01 MTR_1g078260 50.704 71 34 1 147 216 234 304 3.21e-18 85.5
MsG0180004777.01.T01 MTR_5g029850 62.903 62 19 1 116 177 11 68 3.91e-18 78.2
MsG0180004777.01.T01 MTR_4g049760 44.872 78 42 1 147 223 277 354 7.57e-18 84.7
MsG0180004777.01.T01 MTR_3g106060 51.471 68 30 2 158 222 136 203 8.57e-18 82.8
MsG0180004777.01.T01 MTR_4g049790 46.154 78 41 1 147 223 299 376 1.36e-17 84.0
MsG0180004777.01.T01 MTR_1g013790 43.023 86 45 2 159 243 100 182 2.60e-17 80.5
MsG0180004777.01.T01 MTR_2g024380 42.222 90 50 2 141 228 231 320 3.73e-17 82.4
MsG0180004777.01.T01 MTR_3g108960 41.304 92 53 1 126 216 280 371 3.97e-17 82.0
MsG0180004777.01.T01 MTR_4g127040 39.362 94 54 2 134 226 221 312 6.70e-17 80.5
MsG0180004777.01.T01 MTR_4g094908 45.238 84 43 2 134 216 242 323 1.38e-16 79.7
MsG0180004777.01.T01 MTR_2g024350 45.714 70 37 1 160 228 8 77 1.91e-16 77.4
MsG0180004777.01.T01 MTR_8g087000 50.000 60 29 1 161 219 78 137 2.82e-16 77.4
MsG0180004777.01.T01 MTR_8g087000 50.000 60 29 1 161 219 77 136 2.89e-16 77.4
MsG0180004777.01.T01 MTR_2g016770 48.333 60 30 1 161 219 36 95 3.05e-16 76.6
MsG0180004777.01.T01 MTR_2g016770 48.333 60 30 1 161 219 28 87 3.62e-16 76.3
MsG0180004777.01.T01 MTR_1g099600 49.275 69 33 2 161 228 186 253 9.08e-16 77.0
MsG0180004777.01.T01 MTR_0117s0040 40.000 105 61 2 115 218 30 133 1.49e-15 75.5
MsG0180004777.01.T01 MTR_3g031220 44.444 81 40 2 143 223 185 260 1.65e-15 77.0
MsG0180004777.01.T01 MTR_8g099350 34.507 142 75 4 82 215 59 190 2.64e-15 76.3
MsG0180004777.01.T01 MTR_5g097500 46.053 76 41 0 145 220 215 290 2.95e-15 75.5
MsG0180004777.01.T01 MTR_5g097500 30.345 145 80 4 160 295 83 215 6.56e-12 65.9
MsG0180004777.01.T01 MTR_1g070455 50.877 57 27 1 161 216 294 350 1.01e-14 74.3
MsG0180004777.01.T01 MTR_8g067650 38.889 90 53 2 141 228 319 408 1.66e-14 74.3
MsG0180004777.01.T01 MTR_2g083870 50.000 60 29 1 161 219 81 140 1.93e-14 72.4
MsG0180004777.01.T01 MTR_8g067635 45.714 70 37 1 160 228 349 418 6.36e-14 72.8
MsG0180004777.01.T01 MTR_2g075680 35.398 113 70 1 106 215 94 206 1.88e-13 70.1
MsG0180004777.01.T01 MTR_8g069935 43.836 73 39 2 160 230 331 403 2.07e-13 70.9
MsG0180004777.01.T01 MTR_5g074200 49.206 63 31 1 160 222 220 281 2.77e-13 70.1
MsG0180004777.01.T01 MTR_3g090860 51.667 60 26 1 159 215 132 191 3.22e-13 69.7
MsG0180004777.01.T01 MTR_7g073430 50.847 59 26 1 160 215 122 180 5.49e-13 68.6
MsG0180004777.01.T01 MTR_7g117200 39.326 89 51 1 130 215 88 176 7.75e-13 68.6
MsG0180004777.01.T01 MTR_4g047580 37.179 78 48 1 147 223 268 345 1.02e-12 68.9
MsG0180004777.01.T01 MTR_8g027860 38.043 92 49 2 132 215 103 194 1.08e-12 68.6
MsG0180004777.01.T01 MTR_2g075750 48.333 60 28 1 159 215 27 86 1.18e-12 65.9
MsG0180004777.01.T01 MTR_5g067680 42.683 82 39 2 160 238 202 278 1.40e-12 68.2
MsG0180004777.01.T01 MTR_6g053200 38.272 81 49 1 160 239 330 410 2.82e-12 67.8
MsG0180004777.01.T01 MTR_2g075610 49.153 59 27 1 159 214 28 86 3.29e-12 64.7
MsG0180004777.01.T01 MTR_2g075700 38.235 102 51 3 123 215 104 202 6.27e-12 65.9
MsG0180004777.01.T01 MTR_3g095080 66.667 39 13 0 144 182 152 190 8.20e-12 63.9
MsG0180004777.01.T01 MTR_7g073380 46.667 60 29 1 159 215 122 181 9.49e-12 65.1
MsG0180004777.01.T01 MTR_8g032510 37.634 93 53 2 126 215 87 177 1.12e-11 64.7
MsG0180004777.01.T01 MTR_5g067700 44.828 58 29 1 161 215 107 164 9.59e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004777.01.T01 AT2G47260 48.024 329 130 8 31 327 18 337 2.87e-69 219
MsG0180004777.01.T01 AT4G18170 77.000 100 23 0 124 223 136 235 1.55e-50 171
MsG0180004777.01.T01 AT5G49520 46.718 259 113 7 79 323 137 384 2.64e-49 169
MsG0180004777.01.T01 AT1G29860 51.087 184 68 4 144 327 120 281 2.96e-49 166
MsG0180004777.01.T01 AT3G62340 36.877 301 147 7 27 327 19 276 5.79e-46 157
MsG0180004777.01.T01 AT1G69310 63.478 115 36 1 108 216 89 203 3.33e-43 150
MsG0180004777.01.T01 AT1G69310 63.478 115 36 1 108 216 89 203 3.33e-43 150
MsG0180004777.01.T01 AT1G69310 63.478 115 36 1 108 216 89 203 3.33e-43 150
MsG0180004777.01.T01 AT5G46350 77.647 85 18 1 146 229 169 253 5.44e-43 151
MsG0180004777.01.T01 AT1G69310 60.000 115 36 2 108 216 89 199 1.31e-37 135
MsG0180004777.01.T01 AT4G39410 58.654 104 41 2 133 234 195 298 4.16e-34 127
MsG0180004777.01.T01 AT2G03340 44.375 160 79 3 68 225 329 480 2.54e-32 126
MsG0180004777.01.T01 AT2G03340 60.000 60 23 1 160 219 250 308 2.45e-16 80.1
MsG0180004777.01.T01 AT5G13080 70.423 71 21 0 147 217 54 124 6.16e-32 117
MsG0180004777.01.T01 AT2G46130 66.234 77 26 0 141 217 11 87 1.42e-31 114
MsG0180004777.01.T01 AT2G44745 63.095 84 31 0 133 216 118 201 4.72e-31 117
MsG0180004777.01.T01 AT3G01970 68.571 70 22 0 147 216 52 121 1.32e-30 113
MsG0180004777.01.T01 AT5G41570 59.341 91 34 1 130 217 65 155 1.43e-30 114
MsG0180004777.01.T01 AT1G13960 46.281 121 63 1 101 219 348 468 3.33e-30 120
MsG0180004777.01.T01 AT1G13960 60.000 60 23 1 160 219 229 287 1.23e-16 80.9
MsG0180004777.01.T01 AT1G13960 47.581 124 62 2 99 219 192 315 4.31e-30 117
MsG0180004777.01.T01 AT1G13960 60.000 60 23 1 160 219 76 134 1.22e-16 80.1
MsG0180004777.01.T01 AT1G64000 67.606 71 23 0 147 217 101 171 2.58e-29 111
MsG0180004777.01.T01 AT5G07100 43.511 131 66 1 94 224 83 205 3.48e-29 112
MsG0180004777.01.T01 AT5G07100 46.970 66 35 0 160 225 24 89 1.13e-14 72.4
MsG0180004777.01.T01 AT5G07100 43.511 131 66 1 94 224 83 205 3.48e-29 112
MsG0180004777.01.T01 AT5G07100 46.970 66 35 0 160 225 24 89 1.13e-14 72.4
MsG0180004777.01.T01 AT5G07100 43.511 131 66 1 94 224 83 205 3.48e-29 112
MsG0180004777.01.T01 AT5G07100 46.970 66 35 0 160 225 24 89 1.13e-14 72.4
MsG0180004777.01.T01 AT5G07100 43.511 131 66 1 94 224 83 205 3.48e-29 112
MsG0180004777.01.T01 AT5G07100 46.970 66 35 0 160 225 24 89 1.13e-14 72.4
MsG0180004777.01.T01 AT5G07100 43.846 130 65 1 94 223 176 297 1.34e-28 112
MsG0180004777.01.T01 AT5G07100 51.667 60 29 0 160 219 117 176 2.42e-14 72.8
MsG0180004777.01.T01 AT4G26640 40.217 184 93 6 97 273 144 317 2.31e-28 113
MsG0180004777.01.T01 AT4G26640 54.286 70 31 1 160 229 35 103 4.38e-17 81.6
MsG0180004777.01.T01 AT4G26640 40.217 184 93 6 97 273 144 317 2.31e-28 113
MsG0180004777.01.T01 AT4G26640 54.286 70 31 1 160 229 35 103 4.38e-17 81.6
MsG0180004777.01.T01 AT4G26640 40.217 184 93 6 97 273 144 317 2.31e-28 113
MsG0180004777.01.T01 AT4G26640 54.286 70 31 1 160 229 35 103 4.38e-17 81.6
MsG0180004777.01.T01 AT4G26640 40.217 184 93 6 97 273 144 317 2.31e-28 113
MsG0180004777.01.T01 AT4G26640 54.286 70 31 1 160 229 35 103 4.38e-17 81.6
MsG0180004777.01.T01 AT2G38470 43.885 139 69 3 103 232 296 434 2.34e-28 115
MsG0180004777.01.T01 AT2G38470 58.333 60 24 1 160 219 184 242 4.99e-15 76.3
MsG0180004777.01.T01 AT5G26170 63.889 72 26 0 147 218 100 171 2.88e-28 108
MsG0180004777.01.T01 AT4G26640 45.185 135 70 2 97 230 248 379 6.78e-28 113
MsG0180004777.01.T01 AT4G26640 54.286 70 31 1 160 229 139 207 7.77e-17 81.6
MsG0180004777.01.T01 AT4G26640 45.185 135 70 2 97 230 280 411 6.94e-28 114
MsG0180004777.01.T01 AT4G26640 54.286 70 31 1 160 229 171 239 9.10e-17 81.3
MsG0180004777.01.T01 AT4G26640 40.437 183 92 6 98 273 321 493 8.90e-28 113
MsG0180004777.01.T01 AT4G26640 54.286 70 31 1 160 229 211 279 8.42e-17 81.6
MsG0180004777.01.T01 AT3G01080 64.000 75 27 0 145 219 291 365 3.33e-27 110
MsG0180004777.01.T01 AT3G01080 53.030 66 30 1 160 225 167 231 1.12e-15 77.8
MsG0180004777.01.T01 AT3G01080 64.000 75 27 0 145 219 329 403 3.73e-27 111
MsG0180004777.01.T01 AT3G01080 53.030 66 30 1 160 225 205 269 1.17e-15 77.8
MsG0180004777.01.T01 AT2G46130 61.039 77 26 1 141 217 11 83 3.09e-26 100
MsG0180004777.01.T01 AT4G26440 48.214 112 57 1 119 229 330 441 3.58e-26 109
MsG0180004777.01.T01 AT4G26440 50.725 69 33 1 160 228 178 245 2.05e-15 77.4
MsG0180004777.01.T01 AT2G21900 50.000 86 38 2 141 221 85 170 2.38e-25 101
MsG0180004777.01.T01 AT5G56270 60.526 76 30 0 144 219 471 546 4.64e-25 106
MsG0180004777.01.T01 AT5G56270 52.778 72 31 2 160 231 273 341 5.85e-16 79.3
MsG0180004777.01.T01 AT5G64810 45.745 94 49 1 125 218 77 168 1.62e-24 99.0
MsG0180004777.01.T01 AT2G30250 57.500 80 34 0 144 223 312 391 9.49e-24 100
MsG0180004777.01.T01 AT2G30250 44.828 87 39 2 161 239 167 252 2.61e-13 70.5
MsG0180004777.01.T01 AT2G04880 57.534 73 31 0 147 219 270 342 2.02e-23 100
MsG0180004777.01.T01 AT2G04880 57.377 61 25 1 159 219 110 169 7.48e-16 78.6
MsG0180004777.01.T01 AT2G04880 57.534 73 31 0 147 219 294 366 2.43e-23 100
MsG0180004777.01.T01 AT2G04880 57.377 61 25 1 159 219 110 169 7.55e-16 78.6
MsG0180004777.01.T01 AT1G55600 56.164 73 32 0 147 219 294 366 6.89e-22 96.3
MsG0180004777.01.T01 AT2G37260 61.290 62 24 0 155 216 262 323 1.10e-21 94.4
MsG0180004777.01.T01 AT2G37260 40.984 122 61 4 143 254 65 185 1.88e-15 76.6
MsG0180004777.01.T01 AT2G37260 61.290 62 24 0 155 216 264 325 1.14e-21 94.4
MsG0180004777.01.T01 AT2G37260 40.984 122 61 4 143 254 67 187 1.80e-15 76.6
MsG0180004777.01.T01 AT2G37260 61.290 62 24 0 155 216 344 405 1.65e-21 94.7
MsG0180004777.01.T01 AT2G37260 40.984 122 61 4 143 254 147 267 3.40e-15 76.3
MsG0180004777.01.T01 AT4G04450 51.948 77 36 1 144 219 182 258 3.87e-21 94.0
MsG0180004777.01.T01 AT1G62300 40.164 122 70 2 101 219 251 372 4.74e-21 94.4
MsG0180004777.01.T01 AT4G22070 51.948 77 36 1 144 219 281 357 8.37e-21 93.6
MsG0180004777.01.T01 AT4G22070 51.948 77 36 1 144 219 281 357 8.37e-21 93.6
MsG0180004777.01.T01 AT4G22070 51.948 77 36 1 144 219 281 357 8.37e-21 93.6
MsG0180004777.01.T01 AT4G22070 51.948 77 36 1 144 219 281 357 8.37e-21 93.6
MsG0180004777.01.T01 AT4G04450 51.948 77 36 1 144 219 276 352 9.67e-21 93.2
MsG0180004777.01.T01 AT1G68150 50.649 77 37 1 144 219 219 295 3.76e-20 90.5
MsG0180004777.01.T01 AT1G80840 55.556 63 27 1 159 220 145 207 3.98e-20 89.4
MsG0180004777.01.T01 AT4G31800 55.385 65 28 1 159 222 110 174 7.88e-20 87.4
MsG0180004777.01.T01 AT2G25000 47.059 85 38 2 159 242 102 180 1.18e-19 86.7
MsG0180004777.01.T01 AT2G25000 47.059 85 38 2 159 242 102 180 1.18e-19 86.7
MsG0180004777.01.T01 AT4G31800 55.385 65 28 1 159 222 175 239 1.24e-19 88.2
MsG0180004777.01.T01 AT5G52830 55.072 69 29 2 161 228 166 233 1.28e-19 88.6
MsG0180004777.01.T01 AT1G30650 55.072 69 29 2 161 228 218 285 1.48e-19 89.4
MsG0180004777.01.T01 AT2G34830 55.072 69 29 2 161 228 216 283 1.53e-19 89.4
MsG0180004777.01.T01 AT2G34830 55.072 69 29 2 161 228 225 292 1.64e-19 89.0
MsG0180004777.01.T01 AT2G25000 47.059 85 38 2 159 242 124 202 2.17e-19 86.3
MsG0180004777.01.T01 AT2G25000 47.059 85 38 2 159 242 145 223 2.92e-19 86.3
MsG0180004777.01.T01 AT4G01720 44.330 97 45 2 124 219 211 299 4.31e-19 88.2
MsG0180004777.01.T01 AT1G18860 49.351 77 38 1 144 219 223 299 5.31e-19 88.2
MsG0180004777.01.T01 AT5G43290 52.113 71 33 1 147 216 100 170 5.66e-19 85.5
MsG0180004777.01.T01 AT5G45050 55.072 69 29 2 161 228 1042 1109 8.16e-19 87.8
MsG0180004777.01.T01 AT5G45050 55.072 69 29 2 161 228 1153 1220 8.32e-19 87.8
MsG0180004777.01.T01 AT5G45050 55.072 69 29 2 161 228 1181 1248 8.43e-19 87.8
MsG0180004777.01.T01 AT4G30935 39.394 99 55 1 147 245 318 411 2.98e-18 85.5
MsG0180004777.01.T01 AT4G01250 50.725 69 32 2 161 228 129 196 3.28e-18 84.0
MsG0180004777.01.T01 AT1G29280 52.381 63 29 1 161 222 75 137 1.11e-17 81.6
MsG0180004777.01.T01 AT5G15130 46.753 77 40 1 144 219 211 287 1.18e-17 84.0
MsG0180004777.01.T01 AT5G15130 46.753 77 40 1 144 219 169 245 1.23e-17 84.0
MsG0180004777.01.T01 AT4G31550 44.048 84 44 2 134 216 222 303 1.88e-17 82.0
MsG0180004777.01.T01 AT4G31550 43.902 82 45 1 136 216 221 302 2.32e-17 82.0
MsG0180004777.01.T01 AT2G30590 41.667 84 48 1 135 217 288 371 2.68e-17 82.4
MsG0180004777.01.T01 AT3G58710 32.258 155 82 4 69 222 2 134 6.18e-17 79.7
MsG0180004777.01.T01 AT2G23320 43.373 83 46 1 135 216 215 297 6.88e-17 80.5
MsG0180004777.01.T01 AT3G58710 48.611 72 36 1 152 222 62 133 1.05e-16 79.3
MsG0180004777.01.T01 AT2G24570 42.697 89 48 2 134 221 219 305 2.79e-16 78.6
MsG0180004777.01.T01 AT5G28650 40.217 92 54 1 135 225 237 328 4.08e-16 78.2
MsG0180004777.01.T01 AT1G69810 39.024 123 60 4 109 229 107 216 5.49e-16 77.8
MsG0180004777.01.T01 AT3G01080 53.030 66 30 1 160 225 205 269 6.79e-16 77.8
MsG0180004777.01.T01 AT3G04670 40.217 92 54 1 135 225 237 328 6.89e-16 77.8
MsG0180004777.01.T01 AT1G69810 39.024 123 60 4 109 229 165 274 8.38e-16 77.8
MsG0180004777.01.T01 AT4G23550 46.667 75 38 2 155 228 135 208 2.81e-15 75.9
MsG0180004777.01.T01 AT4G24240 39.759 83 49 1 135 216 256 338 1.39e-14 73.9
MsG0180004777.01.T01 AT1G66560 50.847 59 26 1 160 215 103 161 3.81e-14 71.6
MsG0180004777.01.T01 AT5G45260 48.571 70 32 2 161 227 1209 1277 5.27e-14 73.6
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.32e-13 72.4
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 3.13e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.33e-13 72.4
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 2.94e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.37e-13 72.4
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 2.97e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.37e-13 72.4
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 2.97e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.46e-13 72.4
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 3.49e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.46e-13 72.4
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 3.52e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.52e-13 72.0
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 3.25e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 497 594 1.56e-13 72.0
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 399 465 3.32e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.61e-13 72.0
MsG0180004777.01.T01 AT4G12020 44.776 67 36 1 159 225 467 532 3.85e-12 67.8
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.65e-13 72.0
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 3.44e-12 68.2
MsG0180004777.01.T01 AT4G12020 39.796 98 54 2 88 180 564 661 1.65e-13 72.0
MsG0180004777.01.T01 AT4G12020 44.118 68 37 1 158 225 466 532 3.44e-12 68.2
MsG0180004777.01.T01 AT2G46400 40.698 86 48 1 133 215 77 162 1.83e-13 70.1
MsG0180004777.01.T01 AT3G56400 48.333 60 28 1 159 215 119 178 7.27e-13 68.6
MsG0180004777.01.T01 AT4G11070 52.542 59 25 1 160 215 109 167 1.50e-12 67.4
MsG0180004777.01.T01 AT4G11070 52.542 59 25 1 160 215 141 199 1.61e-12 67.8
MsG0180004777.01.T01 AT1G66600 50.000 60 27 1 159 215 102 161 2.62e-12 66.2
MsG0180004777.01.T01 AT1G80590 44.615 65 33 1 161 222 86 150 3.66e-12 65.5
MsG0180004777.01.T01 AT1G66550 50.000 58 26 1 161 215 104 161 4.23e-12 65.5
MsG0180004777.01.T01 AT1G66550 50.000 58 26 1 161 215 109 166 4.93e-12 65.5
MsG0180004777.01.T01 AT2G40740 35.922 103 58 2 160 254 182 284 7.71e-12 65.5
MsG0180004777.01.T01 AT2G40740 35.922 103 58 2 160 254 173 275 8.50e-12 65.5
MsG0180004777.01.T01 AT2G40750 49.153 59 27 1 160 215 152 210 2.95e-11 64.3
MsG0180004777.01.T01 AT4G23810 49.153 59 27 1 160 215 158 216 3.06e-11 63.9
MsG0180004777.01.T01 AT5G24110 38.961 77 39 2 159 232 112 183 3.61e-11 63.5
MsG0180004777.01.T01 AT5G01900 47.368 57 27 1 161 214 111 167 7.03e-11 62.4

Find 87 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTCTTCTTTAGGGTTTA+TGG 0.122782 1:-82669537 MsG0180004777.01.T01:CDS
AAGGGACAACTGCATTTCTT+AGG 0.222393 1:-82668189 MsG0180004777.01.T01:CDS
TCTTCCTCATCTTTGCTAAA+TGG 0.233660 1:-82669602 MsG0180004777.01.T01:CDS
TCGCCTACAAATGAAGGATT+TGG 0.256599 1:-82669701 MsG0180004777.01.T01:five_prime_UTR
ACTGCATTTCTTAGGGATAA+TGG 0.268383 1:-82668181 MsG0180004777.01.T01:CDS
TTGAAAGAAGTTCTTCTTTA+GGG 0.269989 1:-82669544 MsG0180004777.01.T01:CDS
AATGATGAAGAATTGTTATA+AGG 0.284749 1:+82668259 None:intergenic
GTTGAAAGAAGTTCTTCTTT+AGG 0.298040 1:-82669545 MsG0180004777.01.T01:CDS
AATCCAAATCCTTCATTTGT+AGG 0.298705 1:+82669698 None:intergenic
CTGCATTTCTTAGGGATAAT+GGG 0.307370 1:-82668180 MsG0180004777.01.T01:CDS
TAGGAGTTGCAGGTTGTTGC+TGG 0.317655 1:+82669396 None:intergenic
AGGTAATAGTAAGAAGTAAA+AGG 0.324180 1:+82669726 None:intergenic
ACTCTCTCTTGGGCAGTAAA+AGG 0.341688 1:+82668226 None:intergenic
ATGTCCCGTTCCGCCTTTGC+CGG 0.342549 1:-82668436 MsG0180004777.01.T01:CDS
AAGTAGTTGTTGATGTTGAT+AGG 0.343522 1:+82668309 None:intergenic
TAGGGATAATGGGCTACTTC+AGG 0.363679 1:-82668170 MsG0180004777.01.T01:CDS
AACTCCGGCAAAGGCGGAAC+GGG 0.372094 1:+82668432 None:intergenic
CTTCTTCATCTTCTTCTGCT+TGG 0.373036 1:+82669312 None:intergenic
TATGGAGTTACTTGGTGGTC+AGG 0.386026 1:-82669519 MsG0180004777.01.T01:CDS
TGTGCATTTGAGATATCATA+TGG 0.391815 1:-82669675 MsG0180004777.01.T01:exon
TTCGTCATGAAAGCAAATCT+TGG 0.394701 1:+82668783 None:intergenic
TACAAAGCTGTACTCTCTCT+TGG 0.398729 1:+82668215 None:intergenic
TTCTTCCTGATATGACTGAT+AGG 0.400097 1:-82668006 MsG0180004777.01.T01:three_prime_UTR
CACCACCTATCAGTCATATC+AGG 0.403717 1:+82668001 None:intergenic
GAACAAGAGTTAGGAGTTGC+AGG 0.406933 1:+82669386 None:intergenic
GATGAAATCGAACAAGAGTT+AGG 0.413947 1:+82669377 None:intergenic
TATGAGTAGTACCTTGGAAA+AGG 0.414311 1:+82668690 None:intergenic
TTAGGGTTTATGGAGTTACT+TGG 0.415443 1:-82669527 MsG0180004777.01.T01:CDS
GAAAAGCGAGGTTGATCATC+TGG 0.424525 1:-82668763 MsG0180004777.01.T01:CDS
AGAGTACAGCTTTGTAATCA+AGG 0.440017 1:-82668208 MsG0180004777.01.T01:CDS
ACCACCCGCCGGTGTAGTCT+CGG 0.441892 1:-82668401 MsG0180004777.01.T01:CDS
GGATTTCCAGCTACTAACTT+TGG 0.448624 1:-82668376 MsG0180004777.01.T01:CDS
ACCTTGTCGCCTACAAATGA+AGG 0.455067 1:-82669707 MsG0180004777.01.T01:five_prime_UTR
ATGATGAAGAATTGTTATAA+GGG 0.461940 1:+82668260 None:intergenic
AGGGACAACTGCATTTCTTA+GGG 0.464209 1:-82668188 MsG0180004777.01.T01:CDS
ATGAGTAGTACCTTGGAAAA+GGG 0.468338 1:+82668691 None:intergenic
ACTGAACCAAAGTTAGTAGC+TGG 0.485678 1:+82668370 None:intergenic
TCATGATTATGTGGGCTACA+TGG 0.486458 1:+82667935 None:intergenic
GGGTTTATGGAGTTACTTGG+TGG 0.488572 1:-82669524 MsG0180004777.01.T01:CDS
GAGGTTGATCATCTGGAAGA+TGG 0.495903 1:-82668756 MsG0180004777.01.T01:CDS
TCATGATCCAATGCAGGGTC+TGG 0.498076 1:-82667889 MsG0180004777.01.T01:three_prime_UTR
ACAAAGCTGTACTCTCTCTT+GGG 0.501900 1:+82668216 None:intergenic
GTACAATAATCATGATTATG+TGG 0.501939 1:+82667926 None:intergenic
AAGGCGGAACGGGACATAGT+TGG 0.509083 1:+82668442 None:intergenic
ATTGTAGTCACAACATATGA+AGG 0.530444 1:-82668484 MsG0180004777.01.T01:CDS
ATCTGGAAGATGGGTACAGA+TGG 0.534825 1:-82668746 MsG0180004777.01.T01:CDS
GATGGATCATGATCCAATGC+AGG 0.539291 1:-82667895 MsG0180004777.01.T01:three_prime_UTR
AGTAGTTGTTGATGTTGATA+GGG 0.541403 1:+82668310 None:intergenic
TATGTTGTGACTACAATGCT+TGG 0.546996 1:+82668490 None:intergenic
TCATATGGAGAAGAAAGAGA+TGG 0.554668 1:-82669660 MsG0180004777.01.T01:exon
CATATGGAGAAGAAAGAGAT+GGG 0.559126 1:-82669659 MsG0180004777.01.T01:CDS
ACAACAACCAGACCCTGCAT+TGG 0.562527 1:+82667882 None:intergenic
CCACCCGCCGGTGTAGTCTC+GGG 0.562733 1:-82668400 MsG0180004777.01.T01:CDS
GAACGGGACATAGTTGGACT+TGG 0.567628 1:+82668448 None:intergenic
TACAATAATCATGATTATGT+GGG 0.567909 1:+82667927 None:intergenic
TTGGACTTGGATGTGTGTGT+TGG 0.571102 1:+82668461 None:intergenic
CATTGGATCATGATCCATCA+TGG 0.572818 1:+82667899 None:intergenic
GGGTACAGATGGAGAAAGTA+CGG 0.573593 1:-82668735 MsG0180004777.01.T01:CDS
AGGTTGATCATCTGGAAGAT+GGG 0.577380 1:-82668755 MsG0180004777.01.T01:CDS
GAGTACAGCTTTGTAATCAA+GGG 0.578972 1:-82668207 MsG0180004777.01.T01:CDS
GAGACTACACCGGCGGGTGG+TGG 0.579641 1:+82668403 None:intergenic
TCCTTCATTTGTAGGCGACA+AGG 0.580807 1:+82669706 None:intergenic
CAGACATGGTTGGTACATCA+AGG 0.580908 1:+82669483 None:intergenic
GTTATAAGGGTGATTCAAAG+AGG 0.581408 1:+82668273 None:intergenic
TGGTATTTGAACTCCGGCAA+AGG 0.581607 1:+82668423 None:intergenic
CTTGACATTACATGAAGCAG+TGG 0.584317 1:+82668540 None:intergenic
TCTTCTTTCAACATATGTGA+AGG 0.587303 1:+82668139 None:intergenic
GAACTCCGGCAAAGGCGGAA+CGG 0.591004 1:+82668431 None:intergenic
ATAACCATTTAGCAAAGATG+AGG 0.592773 1:+82669598 None:intergenic
GGGTGGTGGTATTTGAACTC+CGG 0.600942 1:+82668417 None:intergenic
CCCGCCGGTGTAGTCTCGGG+TGG 0.601478 1:-82668397 MsG0180004777.01.T01:CDS
TGCTTTCATGACGAAAAGCG+AGG 0.605983 1:-82668775 MsG0180004777.01.T01:CDS
ATTATTGTACTGTACCATGA+TGG 0.607247 1:-82667913 MsG0180004777.01.T01:three_prime_UTR
GGGTGTAAGTGTGAAGAGTG+AGG 0.617036 1:-82669639 MsG0180004777.01.T01:CDS
CCACCCGAGACTACACCGGC+GGG 0.621520 1:+82668397 None:intergenic
TGAGTCACTGCAGACATGGT+TGG 0.623255 1:+82669473 None:intergenic
CCCGAGACTACACCGGCGGG+TGG 0.635933 1:+82668400 None:intergenic
ATGTAATGTCAAGAAACGTG+TGG 0.638009 1:-82668530 MsG0180004777.01.T01:CDS
AAATCCACCCGAGACTACAC+CGG 0.638946 1:+82668393 None:intergenic
TATTTGAACTCCGGCAAAGG+CGG 0.643870 1:+82668426 None:intergenic
TTCCTGATATGACTGATAGG+TGG 0.644033 1:-82668003 MsG0180004777.01.T01:three_prime_UTR
TCCACCCGAGACTACACCGG+CGG 0.646130 1:+82668396 None:intergenic
ATGGATCATGATCCAATGCA+GGG 0.653997 1:-82667894 MsG0180004777.01.T01:three_prime_UTR
ATGGTTGGTACATCAAGGAG+AGG 0.679075 1:+82669488 None:intergenic
GTTCAAATACCACCACCCGC+CGG 0.680657 1:-82668412 MsG0180004777.01.T01:CDS
ATTATGAGTCACTGCAGACA+TGG 0.710153 1:+82669469 None:intergenic
AAGCGTGTTTGATTTCTGTG+AGG 0.717658 1:-82669567 MsG0180004777.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTTCATATTTTTT+TGG - Chr1:82668504-82668523 MsG0180004777.01.T01:CDS 10.0%
!! ATCAGATTGATTAATTAATT+AGG - Chr1:82668757-82668776 MsG0180004777.01.T01:CDS 15.0%
!! ATTAGTAAACTTATAACATT+TGG - Chr1:82669051-82669070 MsG0180004777.01.T01:intron 15.0%
!!! ATAAGTTTACTAATGTTTTT+GGG + Chr1:82669045-82669064 None:intergenic 15.0%
!!! TATAAGTTTACTAATGTTTT+TGG + Chr1:82669046-82669065 None:intergenic 15.0%
!! AATGATGAAGAATTGTTATA+AGG + Chr1:82669403-82669422 None:intergenic 20.0%
!! ACAAAAAAGAGAAAATTAGA+AGG + Chr1:82668414-82668433 None:intergenic 20.0%
!! ACTTCAACATATATAATTTG+AGG - Chr1:82668631-82668650 MsG0180004777.01.T01:intron 20.0%
!! ATAACTTCAAAAAAAGTGAA+TGG - Chr1:82668595-82668614 MsG0180004777.01.T01:intron 20.0%
!! ATGATGAAGAATTGTTATAA+GGG + Chr1:82669402-82669421 None:intergenic 20.0%
!! GATTGATTAATTAATTAGGA+AGG - Chr1:82668761-82668780 MsG0180004777.01.T01:CDS 20.0%
!! GCTAATTAATCTAATCTAAT+CGG + Chr1:82668694-82668713 None:intergenic 20.0%
!! TAATTAGCAAATGAATATGT+TGG - Chr1:82668706-82668725 MsG0180004777.01.T01:CDS 20.0%
!! TACAATAATCATGATTATGT+GGG + Chr1:82669735-82669754 None:intergenic 20.0%
!!! AATTTTCTCTTTTTTGTTGT+TGG - Chr1:82668417-82668436 MsG0180004777.01.T01:CDS 20.0%
!!! AGAAAAAAAAAAGAGAGTTT+TGG + Chr1:82667897-82667916 None:intergenic 20.0%
!!! GAAAAAAAAAAGAGAGTTTT+GGG + Chr1:82667896-82667915 None:intergenic 20.0%
!!! TCTCTAGTTTTTTTTTTTGT+TGG - Chr1:82668567-82668586 MsG0180004777.01.T01:intron 20.0%
!!! TGTTTTCATATTTTTTTGGT+GGG - Chr1:82668508-82668527 MsG0180004777.01.T01:CDS 20.0%
!!! TTGTTTTCATATTTTTTTGG+TGG - Chr1:82668507-82668526 MsG0180004777.01.T01:CDS 20.0%
! AGGTAATAGTAAGAAGTAAA+AGG + Chr1:82667936-82667955 None:intergenic 25.0%
! GTACAATAATCATGATTATG+TGG + Chr1:82669736-82669755 None:intergenic 25.0%
! TCAACATATATAATTTGAGG+TGG - Chr1:82668634-82668653 MsG0180004777.01.T01:intron 25.0%
! TTGAAAGAAGTTCTTCTTTA+GGG - Chr1:82668115-82668134 MsG0180004777.01.T01:three_prime_UTR 25.0%
!! AATTTTTATGAGTAGTACCT+TGG + Chr1:82668978-82668997 None:intergenic 25.0%
!! ATATATAATTTGAGGTGGTA+TGG - Chr1:82668639-82668658 MsG0180004777.01.T01:intron 25.0%
!!! AATCAAGATTTGATGGATTA+TGG - Chr1:82668788-82668807 MsG0180004777.01.T01:CDS 25.0%
!!! ATCAAGATTTGATGGATTAT+GGG - Chr1:82668789-82668808 MsG0180004777.01.T01:CDS 25.0%
!!! GTTTTCATATTTTTTTGGTG+GGG - Chr1:82668509-82668528 MsG0180004777.01.T01:CDS 25.0%
!!! TGACTTTTTCTATAAGACTT+AGG - Chr1:82669613-82669632 MsG0180004777.01.T01:CDS 25.0%
AAGTAGTTGTTGATGTTGAT+AGG + Chr1:82669353-82669372 None:intergenic 30.0%
AATCCAAATCCTTCATTTGT+AGG + Chr1:82667964-82667983 None:intergenic 30.0%
AGTAGTTGTTGATGTTGATA+GGG + Chr1:82669352-82669371 None:intergenic 30.0%
ATAACCATTTAGCAAAGATG+AGG + Chr1:82668064-82668083 None:intergenic 30.0%
ATTATTGTACTGTACCATGA+TGG - Chr1:82669746-82669765 MsG0180004777.01.T01:five_prime_UTR 30.0%
ATTGTAGTCACAACATATGA+AGG - Chr1:82669175-82669194 MsG0180004777.01.T01:intron 30.0%
CAAAAAAAGTGAATGGTTGT+TGG - Chr1:82668602-82668621 MsG0180004777.01.T01:intron 30.0%
CTACATGGAAAAAGATAAAG+TGG + Chr1:82669712-82669731 None:intergenic 30.0%
CTATGTGTTTATGTTTGTGT+AGG - Chr1:82669080-82669099 MsG0180004777.01.T01:intron 30.0%
CTGGTTGTATATATGTGATT+AGG - Chr1:82668814-82668833 MsG0180004777.01.T01:CDS 30.0%
GTTGAAAGAAGTTCTTCTTT+AGG - Chr1:82668114-82668133 MsG0180004777.01.T01:three_prime_UTR 30.0%
TATTTCAGCTGTGATGAAAA+AGG - Chr1:82668459-82668478 MsG0180004777.01.T01:CDS 30.0%
TCTTCTTTCAACATATGTGA+AGG + Chr1:82669523-82669542 None:intergenic 30.0%
! AGGTTCTAATCAAGATTTGA+TGG - Chr1:82668781-82668800 MsG0180004777.01.T01:CDS 30.0%
! TGTGCATTTGAGATATCATA+TGG - Chr1:82667984-82668003 MsG0180004777.01.T01:three_prime_UTR 30.0%
!! AAGTTCTTCTTTAGGGTTTA+TGG - Chr1:82668122-82668141 MsG0180004777.01.T01:exon 30.0%
!!! ATATTTTTTTGGTGGGGTTA+TGG - Chr1:82668515-82668534 MsG0180004777.01.T01:CDS 30.0%
ACTGCATTTCTTAGGGATAA+TGG - Chr1:82669478-82669497 MsG0180004777.01.T01:CDS 35.0%
AGCAAAAGACAAACAAACAG+TGG - Chr1:82668379-82668398 MsG0180004777.01.T01:CDS 35.0%
AGCAAATGAATATGTTGGTG+TGG - Chr1:82668711-82668730 MsG0180004777.01.T01:CDS 35.0%
ATGAGTAGTACCTTGGAAAA+GGG + Chr1:82668971-82668990 None:intergenic 35.0%
ATGTAATGTCAAGAAACGTG+TGG - Chr1:82669129-82669148 MsG0180004777.01.T01:intron 35.0%
CATATGGAGAAGAAAGAGAT+GGG - Chr1:82668000-82668019 MsG0180004777.01.T01:three_prime_UTR 35.0%
CTGCATTTCTTAGGGATAAT+GGG - Chr1:82669479-82669498 MsG0180004777.01.T01:CDS 35.0%
GATGAAATCGAACAAGAGTT+AGG + Chr1:82668285-82668304 None:intergenic 35.0%
GCAAAAGACAAACAAACAGT+GGG - Chr1:82668380-82668399 MsG0180004777.01.T01:CDS 35.0%
GTTATAAGGGTGATTCAAAG+AGG + Chr1:82669389-82669408 None:intergenic 35.0%
TATGAGTAGTACCTTGGAAA+AGG + Chr1:82668972-82668991 None:intergenic 35.0%
TATGTTGTGACTACAATGCT+TGG + Chr1:82669172-82669191 None:intergenic 35.0%
TCATATGGAGAAGAAAGAGA+TGG - Chr1:82667999-82668018 MsG0180004777.01.T01:three_prime_UTR 35.0%
TCTTCCTCATCTTTGCTAAA+TGG - Chr1:82668057-82668076 MsG0180004777.01.T01:three_prime_UTR 35.0%
TTAGGGTTTATGGAGTTACT+TGG - Chr1:82668132-82668151 MsG0180004777.01.T01:exon 35.0%
TTCGTCATGAAAGCAAATCT+TGG + Chr1:82668879-82668898 None:intergenic 35.0%
TTCTTCCTGATATGACTGAT+AGG - Chr1:82669653-82669672 MsG0180004777.01.T01:CDS 35.0%
! AGAGTACAGCTTTGTAATCA+AGG - Chr1:82669451-82669470 MsG0180004777.01.T01:CDS 35.0%
! GAGTACAGCTTTGTAATCAA+GGG - Chr1:82669452-82669471 MsG0180004777.01.T01:CDS 35.0%
! TCAAAAATAGCCCTTTTCCA+AGG - Chr1:82668958-82668977 MsG0180004777.01.T01:intron 35.0%
!! AACTTTGGTTCAGTTTTGCA+AGG - Chr1:82669298-82669317 MsG0180004777.01.T01:CDS 35.0%
!! ATCTGAAAAAGAGTGTTCTG+AGG - Chr1:82668233-82668252 MsG0180004777.01.T01:CDS 35.0%
!! ATTTGATGGATTATGGGATC+TGG - Chr1:82668795-82668814 MsG0180004777.01.T01:CDS 35.0%
!! TCTTTGAGTTCACACTCTTT+TGG - Chr1:82668997-82669016 MsG0180004777.01.T01:intron 35.0%
AAGGGACAACTGCATTTCTT+AGG - Chr1:82669470-82669489 MsG0180004777.01.T01:CDS 40.0%
ACAAAGCTGTACTCTCTCTT+GGG + Chr1:82669446-82669465 None:intergenic 40.0%
ACTGAACCAAAGTTAGTAGC+TGG + Chr1:82669292-82669311 None:intergenic 40.0%
AGGGACAACTGCATTTCTTA+GGG - Chr1:82669471-82669490 MsG0180004777.01.T01:CDS 40.0%
ATGGATCATGATCCAATGCA+GGG - Chr1:82669765-82669784 MsG0180004777.01.T01:five_prime_UTR 40.0%
ATTATGAGTCACTGCAGACA+TGG + Chr1:82668193-82668212 None:intergenic 40.0%
CATTGGATCATGATCCATCA+TGG + Chr1:82669763-82669782 None:intergenic 40.0%
CTTCTTCATCTTCTTCTGCT+TGG + Chr1:82668350-82668369 None:intergenic 40.0%
CTTGACATTACATGAAGCAG+TGG + Chr1:82669122-82669141 None:intergenic 40.0%
GGATTTCCAGCTACTAACTT+TGG - Chr1:82669283-82669302 MsG0180004777.01.T01:intron 40.0%
TACAAAGCTGTACTCTCTCT+TGG + Chr1:82669447-82669466 None:intergenic 40.0%
TCGCCTACAAATGAAGGATT+TGG - Chr1:82667958-82667977 MsG0180004777.01.T01:three_prime_UTR 40.0%
TTCCTGATATGACTGATAGG+TGG - Chr1:82669656-82669675 MsG0180004777.01.T01:CDS 40.0%
! AAGCGTGTTTGATTTCTGTG+AGG - Chr1:82668092-82668111 MsG0180004777.01.T01:three_prime_UTR 40.0%
! AGGTTGATCATCTGGAAGAT+GGG - Chr1:82668904-82668923 MsG0180004777.01.T01:intron 40.0%
! TCATGATTATGTGGGCTACA+TGG + Chr1:82669727-82669746 None:intergenic 40.0%
ACCTTGTCGCCTACAAATGA+AGG - Chr1:82667952-82667971 MsG0180004777.01.T01:three_prime_UTR 45.0%
ACTCTCTCTTGGGCAGTAAA+AGG + Chr1:82669436-82669455 None:intergenic 45.0%
ATCTGGAAGATGGGTACAGA+TGG - Chr1:82668913-82668932 MsG0180004777.01.T01:intron 45.0%
CACCACCTATCAGTCATATC+AGG + Chr1:82669661-82669680 None:intergenic 45.0%
GAACAAGAGTTAGGAGTTGC+AGG + Chr1:82668276-82668295 None:intergenic 45.0%
GATGGATCATGATCCAATGC+AGG - Chr1:82669764-82669783 MsG0180004777.01.T01:five_prime_UTR 45.0%
GGGTACAGATGGAGAAAGTA+CGG - Chr1:82668924-82668943 MsG0180004777.01.T01:intron 45.0%
GGGTTTATGGAGTTACTTGG+TGG - Chr1:82668135-82668154 MsG0180004777.01.T01:CDS 45.0%
TATTTGAACTCCGGCAAAGG+CGG + Chr1:82669236-82669255 None:intergenic 45.0%
TCCTTCATTTGTAGGCGACA+AGG + Chr1:82667956-82667975 None:intergenic 45.0%
TGCTTTCATGACGAAAAGCG+AGG - Chr1:82668884-82668903 MsG0180004777.01.T01:intron 45.0%
TGGTATTTGAACTCCGGCAA+AGG + Chr1:82669239-82669258 None:intergenic 45.0%
TTGGACTTGGATGTGTGTGT+TGG + Chr1:82669201-82669220 None:intergenic 45.0%
! ATGGTTGGTACATCAAGGAG+AGG + Chr1:82668174-82668193 None:intergenic 45.0%
! CAGACATGGTTGGTACATCA+AGG + Chr1:82668179-82668198 None:intergenic 45.0%
! GAAAAGCGAGGTTGATCATC+TGG - Chr1:82668896-82668915 MsG0180004777.01.T01:intron 45.0%
! GAGGTTGATCATCTGGAAGA+TGG - Chr1:82668903-82668922 MsG0180004777.01.T01:intron 45.0%
! TATGGAGTTACTTGGTGGTC+AGG - Chr1:82668140-82668159 MsG0180004777.01.T01:CDS 45.0%
!! TAGGGATAATGGGCTACTTC+AGG - Chr1:82669489-82669508 MsG0180004777.01.T01:CDS 45.0%
AAATCCACCCGAGACTACAC+CGG + Chr1:82669269-82669288 None:intergenic 50.0%
ACAACAACCAGACCCTGCAT+TGG + Chr1:82669780-82669799 None:intergenic 50.0%
GAACGGGACATAGTTGGACT+TGG + Chr1:82669214-82669233 None:intergenic 50.0%
GGGTGTAAGTGTGAAGAGTG+AGG - Chr1:82668020-82668039 MsG0180004777.01.T01:three_prime_UTR 50.0%
TAGGAGTTGCAGGTTGTTGC+TGG + Chr1:82668266-82668285 None:intergenic 50.0%
TCATGATCCAATGCAGGGTC+TGG - Chr1:82669770-82669789 MsG0180004777.01.T01:five_prime_UTR 50.0%
TGAGTCACTGCAGACATGGT+TGG + Chr1:82668189-82668208 None:intergenic 50.0%
! GGGTGGTGGTATTTGAACTC+CGG + Chr1:82669245-82669264 None:intergenic 50.0%
AAGGCGGAACGGGACATAGT+TGG + Chr1:82669220-82669239 None:intergenic 55.0%
GTTCAAATACCACCACCCGC+CGG - Chr1:82669247-82669266 MsG0180004777.01.T01:intron 55.0%
AACTCCGGCAAAGGCGGAAC+GGG + Chr1:82669230-82669249 None:intergenic 60.0%
ATGTCCCGTTCCGCCTTTGC+CGG - Chr1:82669223-82669242 MsG0180004777.01.T01:intron 60.0%
GAACTCCGGCAAAGGCGGAA+CGG + Chr1:82669231-82669250 None:intergenic 60.0%
ACCACCCGCCGGTGTAGTCT+CGG - Chr1:82669258-82669277 MsG0180004777.01.T01:intron 65.0%
TCCACCCGAGACTACACCGG+CGG + Chr1:82669266-82669285 None:intergenic 65.0%
CCACCCGAGACTACACCGGC+GGG + Chr1:82669265-82669284 None:intergenic 70.0%
CCACCCGCCGGTGTAGTCTC+GGG - Chr1:82669259-82669278 MsG0180004777.01.T01:intron 70.0%
GAGACTACACCGGCGGGTGG+TGG + Chr1:82669259-82669278 None:intergenic 70.0%
CCCGAGACTACACCGGCGGG+TGG + Chr1:82669262-82669281 None:intergenic 75.0%
CCCGCCGGTGTAGTCTCGGG+TGG - Chr1:82669262-82669281 MsG0180004777.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 82667876 82669805 82667876 ID=MsG0180004777.01;Name=MsG0180004777.01
Chr1 mRNA 82667876 82669805 82667876 ID=MsG0180004777.01.T01;Parent=MsG0180004777.01;Name=MsG0180004777.01.T01;_AED=0.18;_eAED=0.18;_QI=127|1|1|1|1|1|3|259|327
Chr1 exon 82667876 82668579 82667876 ID=MsG0180004777.01.T01:exon:8608;Parent=MsG0180004777.01.T01
Chr1 exon 82668702 82668845 82668702 ID=MsG0180004777.01.T01:exon:8607;Parent=MsG0180004777.01.T01
Chr1 exon 82669284 82669805 82669284 ID=MsG0180004777.01.T01:exon:8606;Parent=MsG0180004777.01.T01
Chr1 five_prime_UTR 82669679 82669805 82669679 ID=MsG0180004777.01.T01:five_prime_utr;Parent=MsG0180004777.01.T01
Chr1 CDS 82669284 82669678 82669284 ID=MsG0180004777.01.T01:cds;Parent=MsG0180004777.01.T01
Chr1 CDS 82668702 82668845 82668702 ID=MsG0180004777.01.T01:cds;Parent=MsG0180004777.01.T01
Chr1 CDS 82668135 82668579 82668135 ID=MsG0180004777.01.T01:cds;Parent=MsG0180004777.01.T01
Chr1 three_prime_UTR 82667876 82668134 82667876 ID=MsG0180004777.01.T01:three_prime_utr;Parent=MsG0180004777.01.T01
Gene Sequence

>MsG0180004777.01.T01

ATGGAGAAGAAAGAGATGGGTGTAAGTGTGAAGAGTGAGGATGTTATTGTTGATTCTTCCTCATCTTTGCTAAATGGTTATCAATTTTCAAGCGTGTTTGATTTCTGTGAGGTTGAAAGAAGTTCTTCTTTAGGGTTTATGGAGTTACTTGGTGGTCAGGACTATACTCCTCTCCTTGATGTACCAACCATGTCTGCAGTGACTCATAATCACAATACAGTTAAATCTTCATCTGAAAAAGAGTGTTCTGAGGTTTTGAACCAGCAACAACCTGCAACTCCTAACTCTTGTTCGATTTCATCTGCATCTAGTGAAGCAGTCAATGATAATAAGATTGTTGTTAACCAAGCAGAAGAAGATGAAGAAGAAGAAGAAAAGCAAAAGACAAACAAACAGTTGAAAACGAAGAAGACAAATCTAAAGAGACAGAGAGAACCAAGATTTGCTTTCATGACGAAAAGCGAGGTTGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAATAGCCCTTTTCCAAGGAGCTACTATCGTTGCACCACTGCTTCATGTAATGTCAAGAAACGTGTGGAACGTTCTTACACTGATCCAAGCATTGTAGTCACAACATATGAAGGCCAACACACACATCCAAGTCCAACTATGTCCCGTTCCGCCTTTGCCGGAGTTCAAATACCACCACCCGCCGGTGTAGTCTCGGGTGGATTTCCAGCTACTAACTTTGGTTCAGTTTTGCAAGGAAACTACTTATCACAATATCATCAACAACCCTATCAACATCAACAACTACTTGTTAATACATTGTCCTCTTTGAATCACCCTTATAACAATTCTTCATCATTCAAGAATTCACCTTTTACTGCCCAAGAGAGAGTACAGCTTTGTAATCAAGGGACAACTGCATTTCTTAGGGATAATGGGCTACTTCAGGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG

Protein sequence

>MsG0180004777.01.T01

MEKKEMGVSVKSEDVIVDSSSSLLNGYQFSSVFDFCEVERSSSLGFMELLGGQDYTPLLDVPTMSAVTHNHNTVKSSSEKECSEVLNQQQPATPNSCSISSASSEAVNDNKIVVNQAEEDEEEEEKQKTNKQLKTKKTNLKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSYTDPSIVVTTYEGQHTHPSPTMSRSAFAGVQIPPPAGVVSGGFPATNFGSVLQGNYLSQYHQQPYQHQQLLVNTLSSLNHPYNNSSSFKNSPFTAQERVQLCNQGTTAFLRDNGLLQDVVPSHMLKEE*