AlfalfaGEDB | MsG0880045818.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045818.01

KEGG: -
GO: GO:0043531
PFAM: PF00931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045818.01.T01	XP_003629552.1	88.808	411	44	1	1	409	1	411	0	700
MsG0880045818.01.T01	XP_003629552.1	88.542	96	11	0	449	544	597	692	1.93E-42	174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045818.01.T01	Q9FKZ1	38.462	286	171	4	126	409	152	434	9.08E-52	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045818.01.T01	G7LGA4	88.808	411	44	1	1	409	1	411	0.0	700

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048904.01	MsG0880045818.01	0.834014	3.828804e-56	4.486118e-53
MsG0180004154.01	MsG0880045818.01	0.820246	7.588826e-53	5.972811e-50
MsG0180004266.01	MsG0880045818.01	0.845523	3.851926e-59	6.436848e-56
MsG0180004777.01	MsG0880045818.01	0.841074	5.922093e-58	8.602310e-55
MsG0180004941.01	MsG0880045818.01	0.827564	1.459556e-54	1.414131e-51
MsG0280008405.01	MsG0880045818.01	0.811146	8.098961e-51	4.974855e-48
MsG0280011165.01	MsG0880045818.01	0.822212	2.672846e-53	2.222745e-50
MsG0280011193.01	MsG0880045818.01	0.807216	5.633505e-50	3.119705e-47
MsG0280011203.01	MsG0880045818.01	0.813424	2.577934e-51	1.682868e-48
MsG0380015008.01	MsG0880045818.01	0.835615	1.513325e-56	1.860398e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045818.01.T01	MTR_8g079360	88.808	411	44	1	1	409	1	411	0.0	700
MsG0880045818.01.T01	MTR_8g079360	88.542	96	11	0	449	544	597	692	2.34e-46	174
MsG0880045818.01.T01	MTR_8g079450	86.988	415	46	3	1	409	1	413	0.0	689
MsG0880045818.01.T01	MTR_8g079450	89.899	99	10	0	449	547	599	697	1.13e-48	181
MsG0880045818.01.T01	MTR_8g079400	84.634	410	39	4	1	409	11	397	0.0	639
MsG0880045818.01.T01	MTR_8g079400	91.667	96	8	0	449	544	583	678	3.00e-48	179
MsG0880045818.01.T01	MTR_8g079400	84.634	410	39	4	1	409	1	387	0.0	639
MsG0880045818.01.T01	MTR_8g079400	91.667	96	8	0	449	544	573	668	2.77e-48	179
MsG0880045818.01.T01	MTR_0391s0020	74.232	423	93	4	1	409	1	421	0.0	582
MsG0880045818.01.T01	MTR_0391s0020	81.818	99	18	0	448	546	608	706	4.56e-46	173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045818.01.T01	AT5G66900	38.462	286	171	4	126	409	200	482	2.70e-53	191
MsG0880045818.01.T01	AT5G66900	38.462	286	171	4	126	409	152	434	9.26e-53	192
MsG0880045818.01.T01	AT5G66900	46.078	102	50	2	449	545	595	696	1.14e-16	84.0
MsG0880045818.01.T01	AT5G66900	38.462	286	171	4	126	409	200	482	2.47e-52	192
MsG0880045818.01.T01	AT5G66900	46.078	102	50	2	449	545	643	744	1.25e-16	84.0
MsG0880045818.01.T01	AT5G66910	38.889	270	157	6	143	410	173	436	2.29e-43	165
MsG0880045818.01.T01	AT5G66910	45.098	102	51	2	449	545	601	702	5.23e-16	82.0
MsG0880045818.01.T01	AT4G33300	33.212	274	171	4	137	409	176	438	8.36e-35	140
MsG0880045818.01.T01	AT4G33300	38.614	101	58	1	450	546	604	704	4.47e-16	82.0
MsG0880045818.01.T01	AT4G33300	33.212	274	171	4	137	409	176	438	8.36e-35	140

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Find 108 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGCCTCATGACTTG+TGG	0.608021	8:+64873899	MsG0880045818.01.T01:CDS
AAAATCCAAAATTCACTGTT+GGG	0.418291	8:+64872869	MsG0880045818.01.T01:CDS
AAACTATTTATTTCTTCTCT+GGG	0.375040	8:-64872649	None:intergenic
AAAGCAATACAATGATCATT+TGG	0.403874	8:+64872621	MsG0880045818.01.T01:CDS
AAAGTTCAAGGCGATCATTG+AGG	0.634967	8:+64872560	MsG0880045818.01.T01:CDS
AAATTGAAATCTTGTTGCAA+GGG	0.540879	8:-64872485	None:intergenic
AACTATTTATTTCTTCTCTG+GGG	0.596721	8:-64872648	None:intergenic
AAGTCCGCTATTGTTGGTTC+TGG	0.303074	8:+64873463	MsG0880045818.01.T01:CDS
AATCAGACCTCAACCTGAGC+TGG	0.540729	8:-64874761	None:intergenic
AATGGAACCAGCTCAGGTTG+AGG	0.538765	8:+64874754	MsG0880045818.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAATATATGAACATCGT+GGG	+	Chr8:64873366-64873385	MsG0880045818.01.T01:CDS	30.0%
CATCTCACTAAAGAAGATTA+TGG	+	Chr8:64875128-64875147	MsG0880045818.01.T01:CDS	30.0%
CGACAAAAATCTTGTAGAAA+AGG	+	Chr8:64873682-64873701	MsG0880045818.01.T01:CDS	30.0%
CGATGTAGCAATTACTTTAA+TGG	-	Chr8:64873875-64873894	None:intergenic	30.0%
GAAAATCCAAAATTCACTGT+TGG	+	Chr8:64872868-64872887	MsG0880045818.01.T01:CDS	30.0%
GAAATTGAAATCTTGTTGCA+AGG	-	Chr8:64872489-64872508	None:intergenic	30.0%
GCAATTACTTTAATGGTAAG+TGG	-	Chr8:64873868-64873887	None:intergenic	30.0%
TCCTCATGATATTGGAAAAT+TGG	+	Chr8:64875179-64875198	MsG0880045818.01.T01:CDS	30.0%
TCTACAATAGTCTTCAACAT+GGG	-	Chr8:64873347-64873366	None:intergenic	30.0%
TGATTACTGCAAAGATTTGT+TGG	+	Chr8:64875080-64875099	MsG0880045818.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	64872357	64875218	64872357	ID=MsG0880045818.01;Name=MsG0880045818.01
Chr8	mRNA	64872357	64875218	64872357	ID=MsG0880045818.01.T01;Parent=MsG0880045818.01;Name=MsG0880045818.01.T01;_AED=0.49;_eAED=0.49;_QI=103\|0.5\|0.4\|1\|1\|1\|5\|0\|550
Chr8	exon	64872357	64873024	64872357	ID=MsG0880045818.01.T01:exon:13493;Parent=MsG0880045818.01.T01
Chr8	exon	64873300	64873703	64873300	ID=MsG0880045818.01.T01:exon:13494;Parent=MsG0880045818.01.T01
Chr8	exon	64873841	64874105	64873841	ID=MsG0880045818.01.T01:exon:13495;Parent=MsG0880045818.01.T01
Chr8	exon	64874727	64874835	64874727	ID=MsG0880045818.01.T01:exon:13496;Parent=MsG0880045818.01.T01
Chr8	exon	64874909	64875218	64874909	ID=MsG0880045818.01.T01:exon:13497;Parent=MsG0880045818.01.T01
Chr8	five_prime_UTR	64872357	64872459	64872357	ID=MsG0880045818.01.T01:five_prime_utr;Parent=MsG0880045818.01.T01
Chr8	CDS	64872460	64873024	64872460	ID=MsG0880045818.01.T01:cds;Parent=MsG0880045818.01.T01
Chr8	CDS	64873300	64873703	64873300	ID=MsG0880045818.01.T01:cds;Parent=MsG0880045818.01.T01
Chr8	CDS	64873841	64874105	64873841	ID=MsG0880045818.01.T01:cds;Parent=MsG0880045818.01.T01
Chr8	CDS	64874727	64874835	64874727	ID=MsG0880045818.01.T01:cds;Parent=MsG0880045818.01.T01
Chr8	CDS	64874909	64875218	64874909	ID=MsG0880045818.01.T01:cds;Parent=MsG0880045818.01.T01

Gene Sequence

>MsG0880045818.01.T01

ATGAGTAGCGCCACACATATTATTACCCTTGCAACAAGATTTCAATTTCATGATGTCTTGAACAAAATATCTCAAATTGTTGAAAAAGCACAAGAGAACCAAAGTTCAAGGCGATCATTGAGGTTAATCTTAAAGAATTTATCTCCCGTTGTACAAGATATAAAGCAATACAATGATCATTTGGATCACCCCAGAGAAGAAATAAATAGTTTGATAGAAGAAAATGATGCAGAAGAAAATGCATGCAAATGTTCTTCTGAGAATGATTCCTATGTTGTTGATAAGAACCAATCTCTTATTGTAAATGATGTTGAAGAGACGCTTTATAAGGCCAGAGAAATTCTTGAGCTTCTCAACCATGAAACTTTTGAAGCTGGACCACCTTTCAAGCGTCCTTTTGATGTTCCTGAAAATCCAAAATTCACTGTTGGGTTGGATATACCATTTAGCAAGTTGAAAATGGAGCTTTTAAGGAATGGTAGTTCCACCCTTGTGTTGACTGGTTTAGGAGGATTGGGGAAAACCACTCTGGCTACAATGCTTTGTTGGGATGAACAAGTTCAGGGTAAATTCATGGAAAACATTATATTTGTCACCTTCTCAAAAACACCCATGTTGAAGACTATTGTAGAGAGAATATATGAACATCGTGGGTATCCAGTACCAGAGTTTCAAAGTGATGAAGAAGCTGTCAATAGGTTAGGACTTTTGTTGAAGAAAGTTGAGGGAAGTCCGCTATTGTTGGTTCTGGATGATGTTTGGCCAAGCTCAGAATCTCTTGTTGAGAAACTTCAATTCAAGATATCAGATTTCAAAATTCTGGTGACTTCAAGGGTTGCATTTCCAAGGTTTAGCACAACATGTATCTTAACACCTCTTGCTCATGAAGACGCAGTAACGCTTTTCCATCACCATGCTCAGATGGAAAAATATAGTTCAAAAATAATCGACAAAAATCTTGTAGAAAAGGTCGTTAGAAGTTGCCAAGGTTTACCACTTACCATTAAAGTAATTGCTACATCGCTAAAAAATAGGCCTCATGACTTGTGGCGTAAGATAGTGAAGGAACTGTCACAAGGTCATTCTATTCTTGATTCTAATACCGAATTACTTACTCGCCTCCAAAAGATCTTCGATGTTTTGGAAGATAATCCCACAATCATGGAGTGCTTCATGGACCTAGCCTTATTCCCCGAAGACCATAGAATTCCTGTCGCTGCTCTCGTGATATGTGATGAAGCATGTGCGTGGATTGGTCTCAAATGGAACCAGCTCAGGTTGAGGTCTGATTTTAAATCTTCATACCAAGCAGTACTCATTACCCGAGTGGATTGGAAAAATGATTCTTTACAGAATCTGGAAAGAATTAGACTAGAGCGAATTTCCGTTCCTTCGTTCGCCACAGTAAAGAATCTGAAAAAACTATCGCTCTACATGTGTAATACAAGACTGGCTTTTGAAAAAGGTAGCATCCTAATTTCAGATGCATTTCCAAATTTAGAAGAATTGAACATTGATTACTGCAAAGATTTGTTGGTATTGCCAACTGGTATCTGTGATATCATCTCACTAAAGAAGATTATGGTTACTAATTGCCACAAGCTTTCATCACTTCCTCATGATATTGGAAAATTGGAGAATTGGAACTTCTAA

Protein sequence

>MsG0880045818.01.T01

MSSATHIITLATRFQFHDVLNKISQIVEKAQENQSSRRSLRLILKNLSPVVQDIKQYNDHLDHPREEINSLIEENDAEENACKCSSENDSYVVDKNQSLIVNDVEETLYKAREILELLNHETFEAGPPFKRPFDVPENPKFTVGLDIPFSKLKMELLRNGSSTLVLTGLGGLGKTTLATMLCWDEQVQGKFMENIIFVTFSKTPMLKTIVERIYEHRGYPVPEFQSDEEAVNRLGLLLKKVEGSPLLLVLDDVWPSSESLVEKLQFKISDFKILVTSRVAFPRFSTTCILTPLAHEDAVTLFHHHAQMEKYSSKIIDKNLVEKVVRSCQGLPLTIKVIATSLKNRPHDLWRKIVKELSQGHSILDSNTELLTRLQKIFDVLEDNPTIMECFMDLALFPEDHRIPVAALVICDEACAWIGLKWNQLRLRSDFKSSYQAVLITRVDWKNDSLQNLERIRLERISVPSFATVKNLKKLSLYMCNTRLAFEKGSILISDAFPNLEELNIDYCKDLLVLPTGICDIISLKKIMVTNCHKLSSLPHDIGKLENWNF*