Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030700.01.T01 | XP_013450902.1 | 85.629 | 334 | 41 | 2 | 15 | 348 | 153 | 479 | 4.22E-177 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030700.01.T01 | Q9LH84 | 66.786 | 280 | 70 | 3 | 43 | 322 | 207 | 463 | 3.32E-115 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030700.01.T01 | A0A072U5K8 | 85.629 | 334 | 41 | 2 | 15 | 348 | 153 | 479 | 2.01e-177 | 510 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000470.01 | MsG0680030700.01 | 0.803695 | 3.083631e-49 | 1.559873e-46 |
| MsG0680030700.01 | MsG0680035444.01 | 0.808904 | 2.462625e-50 | 1.425326e-47 |
| MsG0680030700.01 | MsG0780038836.01 | 0.813723 | 2.215764e-51 | 1.458242e-48 |
| MsG0680030700.01 | MsG0780038906.01 | 0.805619 | 1.222937e-49 | 6.500153e-47 |
| MsG0380016910.01 | MsG0680030700.01 | 0.804400 | 2.199961e-49 | 1.133155e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030700.01.T01 | MTR_6g009553 | 85.629 | 334 | 41 | 2 | 15 | 348 | 153 | 479 | 0.0 | 510 |
| MsG0680030700.01.T01 | MTR_6g009770 | 84.431 | 334 | 43 | 2 | 15 | 348 | 154 | 478 | 5.47e-179 | 506 |
| MsG0680030700.01.T01 | MTR_6g009720 | 82.635 | 334 | 49 | 2 | 15 | 348 | 176 | 500 | 1.28e-174 | 495 |
| MsG0680030700.01.T01 | MTR_6g009510 | 63.926 | 377 | 66 | 5 | 1 | 348 | 104 | 439 | 1.03e-149 | 429 |
| MsG0680030700.01.T01 | MTR_6g009520 | 75.896 | 307 | 50 | 3 | 44 | 348 | 210 | 494 | 8.14e-148 | 427 |
| MsG0680030700.01.T01 | MTR_6g009520 | 52.308 | 65 | 25 | 1 | 1 | 59 | 94 | 158 | 4.19e-13 | 70.5 |
| MsG0680030700.01.T01 | MTR_6g009540 | 75.896 | 307 | 50 | 3 | 44 | 348 | 208 | 492 | 1.35e-146 | 424 |
| MsG0680030700.01.T01 | MTR_6g009540 | 49.231 | 65 | 27 | 1 | 1 | 59 | 92 | 156 | 5.64e-13 | 70.1 |
| MsG0680030700.01.T01 | MTR_6g009660 | 61.194 | 402 | 72 | 6 | 1 | 348 | 71 | 442 | 3.10e-145 | 419 |
| MsG0680030700.01.T01 | MTR_6g042290 | 73.723 | 274 | 39 | 3 | 44 | 317 | 211 | 451 | 4.03e-136 | 397 |
| MsG0680030700.01.T01 | MTR_7g008040 | 67.883 | 274 | 71 | 4 | 44 | 317 | 204 | 460 | 3.57e-125 | 370 |
| MsG0680030700.01.T01 | MTR_4g107370 | 63.574 | 291 | 88 | 5 | 43 | 331 | 208 | 482 | 5.34e-124 | 366 |
| MsG0680030700.01.T01 | MTR_1g022250 | 62.199 | 291 | 86 | 5 | 42 | 332 | 196 | 462 | 1.54e-122 | 361 |
| MsG0680030700.01.T01 | MTR_2g030420 | 60.481 | 291 | 86 | 5 | 42 | 328 | 199 | 464 | 1.05e-116 | 346 |
| MsG0680030700.01.T01 | MTR_1g022245 | 61.538 | 273 | 92 | 3 | 44 | 316 | 201 | 460 | 4.19e-111 | 333 |
| MsG0680030700.01.T01 | MTR_5g020980 | 42.938 | 354 | 127 | 8 | 3 | 332 | 169 | 471 | 1.29e-85 | 267 |
| MsG0680030700.01.T01 | MTR_4g128260 | 47.525 | 303 | 131 | 5 | 34 | 332 | 193 | 471 | 5.51e-85 | 266 |
| MsG0680030700.01.T01 | MTR_2g061820 | 46.959 | 296 | 131 | 6 | 23 | 317 | 174 | 444 | 1.71e-83 | 262 |
| MsG0680030700.01.T01 | MTR_2g076690 | 47.569 | 288 | 102 | 7 | 44 | 329 | 206 | 446 | 9.14e-83 | 259 |
| MsG0680030700.01.T01 | MTR_2g076710 | 47.183 | 284 | 100 | 6 | 44 | 325 | 211 | 446 | 2.95e-81 | 254 |
| MsG0680030700.01.T01 | MTR_2g076970 | 45.277 | 307 | 120 | 6 | 44 | 348 | 199 | 459 | 5.97e-80 | 252 |
| MsG0680030700.01.T01 | MTR_2g076920 | 46.341 | 287 | 105 | 7 | 44 | 328 | 199 | 438 | 4.80e-79 | 249 |
| MsG0680030700.01.T01 | MTR_8g076920 | 45.833 | 288 | 112 | 4 | 43 | 330 | 223 | 466 | 1.80e-78 | 249 |
| MsG0680030700.01.T01 | MTR_2g076840 | 47.653 | 277 | 98 | 6 | 44 | 318 | 473 | 704 | 1.89e-77 | 252 |
| MsG0680030700.01.T01 | MTR_2g076840 | 45.183 | 301 | 115 | 7 | 44 | 340 | 197 | 451 | 3.97e-77 | 251 |
| MsG0680030700.01.T01 | MTR_2g076990 | 45.775 | 284 | 108 | 5 | 44 | 325 | 142 | 381 | 9.41e-77 | 243 |
| MsG0680030700.01.T01 | MTR_2g076900 | 44.333 | 300 | 119 | 6 | 44 | 341 | 204 | 457 | 1.07e-76 | 243 |
| MsG0680030700.01.T01 | MTR_5g020990 | 44.737 | 304 | 128 | 7 | 28 | 327 | 216 | 483 | 1.50e-75 | 241 |
| MsG0680030700.01.T01 | MTR_3g103150 | 43.273 | 275 | 115 | 4 | 44 | 317 | 42 | 276 | 2.35e-72 | 226 |
| MsG0680030700.01.T01 | MTR_7g117950 | 36.264 | 273 | 114 | 7 | 44 | 310 | 187 | 405 | 1.00e-49 | 173 |
| MsG0680030700.01.T01 | MTR_3g092060 | 34.014 | 294 | 131 | 7 | 28 | 318 | 182 | 415 | 7.42e-48 | 168 |
| MsG0680030700.01.T01 | MTR_1g011680 | 63.025 | 119 | 43 | 1 | 198 | 316 | 16 | 133 | 5.61e-44 | 150 |
| MsG0680030700.01.T01 | MTR_8g027200 | 30.000 | 330 | 147 | 7 | 3 | 297 | 90 | 370 | 8.73e-43 | 154 |
| MsG0680030700.01.T01 | MTR_5g021020 | 35.740 | 277 | 115 | 8 | 44 | 317 | 189 | 405 | 1.08e-40 | 147 |
| MsG0680030700.01.T01 | MTR_5g021000 | 51.852 | 108 | 48 | 2 | 211 | 317 | 1 | 105 | 2.02e-32 | 119 |
| MsG0680030700.01.T01 | MTR_5g020720 | 36.464 | 181 | 76 | 4 | 103 | 282 | 25 | 167 | 7.67e-26 | 102 |
| MsG0680030700.01.T01 | MTR_1g113750 | 50.495 | 101 | 42 | 2 | 244 | 344 | 16 | 108 | 7.20e-23 | 92.8 |
| MsG0680030700.01.T01 | MTR_5g021010 | 47.253 | 91 | 44 | 2 | 228 | 317 | 34 | 121 | 7.35e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030700.01.T01 | AT3G28510 | 66.786 | 280 | 70 | 3 | 43 | 322 | 207 | 463 | 3.39e-116 | 347 |
| MsG0680030700.01.T01 | AT3G28580 | 66.300 | 273 | 69 | 5 | 43 | 313 | 204 | 455 | 2.07e-114 | 341 |
| MsG0680030700.01.T01 | AT3G28600 | 59.866 | 299 | 81 | 5 | 44 | 342 | 164 | 423 | 6.56e-114 | 338 |
| MsG0680030700.01.T01 | AT3G28610 | 58.725 | 298 | 88 | 5 | 43 | 334 | 201 | 469 | 2.00e-113 | 338 |
| MsG0680030700.01.T01 | AT3G28600 | 59.866 | 299 | 81 | 5 | 44 | 342 | 203 | 462 | 3.38e-113 | 337 |
| MsG0680030700.01.T01 | AT5G40010 | 64.130 | 276 | 72 | 5 | 43 | 313 | 207 | 460 | 7.96e-112 | 335 |
| MsG0680030700.01.T01 | AT3G28540 | 65.074 | 272 | 75 | 3 | 43 | 314 | 203 | 454 | 1.58e-111 | 334 |
| MsG0680030700.01.T01 | AT3G28540 | 65.074 | 272 | 75 | 3 | 43 | 314 | 203 | 454 | 2.04e-111 | 334 |
| MsG0680030700.01.T01 | AT5G40000 | 57.860 | 299 | 88 | 6 | 44 | 338 | 206 | 470 | 9.31e-110 | 328 |
| MsG0680030700.01.T01 | AT3G28520 | 59.170 | 289 | 94 | 3 | 28 | 316 | 177 | 441 | 1.06e-103 | 313 |
| MsG0680030700.01.T01 | AT3G28570 | 57.664 | 274 | 75 | 4 | 44 | 317 | 201 | 433 | 7.62e-101 | 305 |
| MsG0680030700.01.T01 | AT3G28570 | 57.664 | 274 | 75 | 4 | 44 | 317 | 208 | 440 | 1.50e-100 | 304 |
| MsG0680030700.01.T01 | AT3G28580 | 60.073 | 273 | 64 | 5 | 43 | 313 | 204 | 433 | 3.88e-97 | 296 |
| MsG0680030700.01.T01 | AT3G50940 | 43.425 | 327 | 137 | 6 | 5 | 327 | 169 | 451 | 6.08e-88 | 272 |
| MsG0680030700.01.T01 | AT3G50930 | 49.007 | 302 | 110 | 8 | 28 | 328 | 253 | 511 | 2.54e-86 | 271 |
| MsG0680030700.01.T01 | AT5G57480 | 44.951 | 307 | 148 | 5 | 34 | 337 | 193 | 481 | 1.33e-83 | 263 |
| MsG0680030700.01.T01 | AT4G25835 | 46.580 | 307 | 132 | 7 | 34 | 336 | 193 | 471 | 4.57e-83 | 261 |
| MsG0680030700.01.T01 | AT5G17760 | 47.018 | 285 | 108 | 5 | 44 | 325 | 218 | 462 | 9.99e-82 | 258 |
| MsG0680030700.01.T01 | AT4G05380 | 48.043 | 281 | 112 | 5 | 44 | 324 | 208 | 454 | 8.10e-80 | 251 |
| MsG0680030700.01.T01 | AT2G18193 | 45.098 | 306 | 117 | 7 | 28 | 332 | 197 | 452 | 3.25e-79 | 251 |
| MsG0680030700.01.T01 | AT4G30250 | 46.000 | 300 | 125 | 7 | 37 | 332 | 205 | 471 | 5.73e-75 | 240 |
| MsG0680030700.01.T01 | AT4G30250 | 46.000 | 300 | 125 | 7 | 37 | 332 | 203 | 469 | 6.83e-75 | 240 |
| MsG0680030700.01.T01 | AT2G18190 | 42.763 | 304 | 123 | 7 | 28 | 325 | 198 | 456 | 1.94e-74 | 238 |
| MsG0680030700.01.T01 | AT1G43910 | 45.070 | 284 | 126 | 4 | 44 | 327 | 204 | 457 | 8.29e-73 | 233 |
| MsG0680030700.01.T01 | AT5G17740 | 40.762 | 341 | 140 | 7 | 26 | 346 | 197 | 495 | 8.61e-73 | 235 |
| MsG0680030700.01.T01 | AT5G17730 | 41.638 | 293 | 120 | 6 | 28 | 317 | 199 | 443 | 1.61e-72 | 233 |
| MsG0680030700.01.T01 | AT5G17750 | 42.041 | 245 | 101 | 3 | 42 | 282 | 183 | 390 | 2.74e-63 | 206 |
| MsG0680030700.01.T01 | AT2G46620 | 38.406 | 276 | 113 | 7 | 44 | 317 | 196 | 416 | 2.21e-52 | 181 |
| MsG0680030700.01.T01 | AT5G17760 | 55.660 | 106 | 46 | 1 | 44 | 149 | 218 | 322 | 2.06e-37 | 137 |
| MsG0680030700.01.T01 | AT3G29800 | 30.072 | 276 | 128 | 8 | 44 | 315 | 164 | 378 | 8.82e-32 | 124 |
| MsG0680030700.01.T01 | AT4G05340 | 48.315 | 89 | 46 | 0 | 181 | 269 | 6 | 94 | 2.87e-21 | 87.4 |
Find 69 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCAAGGTAACTCTTTC+GGG | 0.192234 | 6:-7346574 | MsG0680030700.01.T01:CDS |
| GAAAAGCAAGGTAACTCTTT+CGG | 0.309544 | 6:-7346575 | MsG0680030700.01.T01:CDS |
| AACTTGATCCTGCTCTTATT+AGG | 0.329188 | 6:-7346471 | MsG0680030700.01.T01:CDS |
| ATGGTAGATTTCCCAGTTCC+TGG | 0.331699 | 6:+7346904 | None:intergenic |
| CTCTATGGTCCACCAGGAAC+TGG | 0.345989 | 6:-7346916 | MsG0680030700.01.T01:CDS |
| GATTGTTCTCTTGATCTTAC+CGG | 0.364774 | 6:-7346748 | MsG0680030700.01.T01:CDS |
| ATCTCTTCTTTCTTCTTCTC+CGG | 0.375392 | 6:+7347018 | None:intergenic |
| CGGTCAAAGGAAGAAGAAAA+AGG | 0.376776 | 6:-7346728 | MsG0680030700.01.T01:CDS |
| AGAGGAGGAAGCAAAGAAAA+AGG | 0.379957 | 6:-7346200 | MsG0680030700.01.T01:CDS |
| AGGGAAAGATAAACAAGAAT+TGG | 0.400815 | 6:-7346155 | MsG0680030700.01.T01:CDS |
| AGTTGGAAAGGCTTGGAAAC+GGG | 0.402333 | 6:-7346947 | MsG0680030700.01.T01:CDS |
| AGTTCAATGGAGTCAAAGTT+TGG | 0.406209 | 6:-7347293 | MsG0680030700.01.T01:CDS |
| AAAGGCTGTGAAAGCTCAAC+TGG | 0.419112 | 6:-7346182 | MsG0680030700.01.T01:CDS |
| AAAGAGTATTATGCTAAAGT+TGG | 0.419632 | 6:-7346964 | MsG0680030700.01.T01:CDS |
| TCCAGTTATTGAAAAGTTGT+TGG | 0.424243 | 6:-7346344 | MsG0680030700.01.T01:CDS |
| CCAGTTATTGAAAAGTTGTT+GGG | 0.424825 | 6:-7346343 | MsG0680030700.01.T01:CDS |
| CGACTTTGGCATCAAATTCT+CGG | 0.431005 | 6:+7346291 | None:intergenic |
| GTGAAAGCTCAACTGGTGGC+AGG | 0.437872 | 6:-7346175 | MsG0680030700.01.T01:CDS |
| GATCTTGTTAAATTCAAGAA+AGG | 0.443486 | 6:-7346988 | MsG0680030700.01.T01:CDS |
| TTGTAGCTATCAAGCGTTCA+AGG | 0.448997 | 6:-7346413 | MsG0680030700.01.T01:CDS |
| ACATCTTCGGTGGTCGACTT+TGG | 0.450422 | 6:+7346277 | None:intergenic |
| CAAGCAAGCCTCAACATCTT+CGG | 0.458988 | 6:+7346264 | None:intergenic |
| TGCACAGTTCCAAGAAGAAA+AGG | 0.462520 | 6:-7347258 | MsG0680030700.01.T01:CDS |
| TGCTAAGGACAAGCGGGGAT+TGG | 0.464807 | 6:+7347343 | None:intergenic |
| TGAAACACTTGCTATGGAAC+CGG | 0.467539 | 6:-7347037 | MsG0680030700.01.T01:CDS |
| GAACGCTTGATAGCTACAAT+AGG | 0.467809 | 6:+7346417 | None:intergenic |
| AAACGGGGTTATCTACTCTA+TGG | 0.470110 | 6:-7346931 | MsG0680030700.01.T01:CDS |
| ATGCTAAAGTTGGAAAGGCT+TGG | 0.473908 | 6:-7346954 | MsG0680030700.01.T01:CDS |
| TCTTGAGATTGCAAAGGAAA+AGG | 0.487401 | 6:-7346224 | MsG0680030700.01.T01:CDS |
| ATCTTGTTAAATTCAAGAAA+GGG | 0.489939 | 6:-7346987 | MsG0680030700.01.T01:CDS |
| AAATTCTCGGCAACATCAGC+GGG | 0.497637 | 6:+7346304 | None:intergenic |
| AAAGTTTGAAACACTTGCTA+TGG | 0.505574 | 6:-7347043 | MsG0680030700.01.T01:intron |
| TGCAAAGGAAAAGGAAGAGG+AGG | 0.513860 | 6:-7346215 | MsG0680030700.01.T01:CDS |
| CTCTTGATCTTACCGGTCAA+AGG | 0.516386 | 6:-7346741 | MsG0680030700.01.T01:CDS |
| GATTGCAAAGGAAAAGGAAG+AGG | 0.519990 | 6:-7346218 | MsG0680030700.01.T01:CDS |
| AAGTTGGAAAGGCTTGGAAA+CGG | 0.520529 | 6:-7346948 | MsG0680030700.01.T01:CDS |
| ATTTGCAATAGCAGATATCA+TGG | 0.529265 | 6:+7346885 | None:intergenic |
| CTTCCTCTCCTAATAAGAGC+AGG | 0.534884 | 6:+7346463 | None:intergenic |
| CATCCATGCTAAGGACAAGC+GGG | 0.537815 | 6:+7347337 | None:intergenic |
| ATGATGATGATGAAGTGAAA+AGG | 0.542627 | 6:-7346597 | MsG0680030700.01.T01:CDS |
| TACTTAGATGTTGAGTCTCA+TGG | 0.546069 | 6:-7346376 | MsG0680030700.01.T01:CDS |
| GAGATCGAGGATGAGTTCAA+TGG | 0.552830 | 6:-7347306 | MsG0680030700.01.T01:CDS |
| CTGCTCTTATTAGGAGAGGA+AGG | 0.556023 | 6:-7346462 | MsG0680030700.01.T01:CDS |
| TCTATGGTCCACCAGGAACT+GGG | 0.572259 | 6:-7346915 | MsG0680030700.01.T01:CDS |
| CTTCGTTGTCATCCATGCTA+AGG | 0.575308 | 6:+7347328 | None:intergenic |
| GTATTATGCTAAAGTTGGAA+AGG | 0.575311 | 6:-7346959 | MsG0680030700.01.T01:CDS |
| AAGAAGAAAAGGCATGGATG+TGG | 0.577533 | 6:-7347247 | MsG0680030700.01.T01:intron |
| GTCGACCACCGAAGATGTTG+AGG | 0.579238 | 6:-7346272 | MsG0680030700.01.T01:CDS |
| ATCCCCGCTTGTCCTTAGCA+TGG | 0.580201 | 6:-7347340 | MsG0680030700.01.T01:CDS |
| TCAATATCTTGAGATTGCAA+AGG | 0.588510 | 6:-7346230 | MsG0680030700.01.T01:CDS |
| GGTCATCATGTGGAGGAGAA+CGG | 0.588815 | 6:-7346525 | MsG0680030700.01.T01:CDS |
| TGAAAGCTCAACTGGTGGCA+GGG | 0.593335 | 6:-7346174 | MsG0680030700.01.T01:CDS |
| TCTTATTAGGAGAGGAAGGA+TGG | 0.597653 | 6:-7346458 | MsG0680030700.01.T01:CDS |
| TCTTGAATTAACAACTGTCA+AGG | 0.600809 | 6:-7346839 | MsG0680030700.01.T01:CDS |
| AGTTCCAAGAAGAAAAGGCA+TGG | 0.604187 | 6:-7347253 | MsG0680030700.01.T01:CDS |
| TGAAGTGAAAAGGAAAAGCA+AGG | 0.604210 | 6:-7346587 | MsG0680030700.01.T01:CDS |
| GTAGATTTCCCAGTTCCTGG+TGG | 0.607183 | 6:+7346907 | None:intergenic |
| GTTGGAAAGGCTTGGAAACG+GGG | 0.612143 | 6:-7346946 | MsG0680030700.01.T01:CDS |
| CAAATTCTCGGCAACATCAG+CGG | 0.615979 | 6:+7346303 | None:intergenic |
| GGCTGTGAAAGCTCAACTGG+TGG | 0.619444 | 6:-7346179 | MsG0680030700.01.T01:CDS |
| TCAATGGAGTCAAAGTTTGG+TGG | 0.621281 | 6:-7347290 | MsG0680030700.01.T01:CDS |
| TCATCCATGCTAAGGACAAG+CGG | 0.626519 | 6:+7347336 | None:intergenic |
| GGATGACAACGAAGAGATCG+AGG | 0.630265 | 6:-7347319 | MsG0680030700.01.T01:CDS |
| TATCTACTCTATGGTCCACC+AGG | 0.636874 | 6:-7346922 | MsG0680030700.01.T01:CDS |
| GATCCTGCTCTTATTAGGAG+AGG | 0.638299 | 6:-7346466 | MsG0680030700.01.T01:CDS |
| GCAAGCCTCAACATCTTCGG+TGG | 0.653613 | 6:+7346267 | None:intergenic |
| GATGGAATTTGGTCATCATG+TGG | 0.664286 | 6:-7346535 | MsG0680030700.01.T01:CDS |
| ATCCATGCTAAGGACAAGCG+GGG | 0.690279 | 6:+7347338 | None:intergenic |
| GGAATTTGGTCATCATGTGG+AGG | 0.714003 | 6:-7346532 | MsG0680030700.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTGTTAAATTCAAGAAA+GGG | - | Chr6:7346511-7346530 | MsG0680030700.01.T01:CDS | 20.0% |
| !!! | AATTTTCACAACTAATTTTG+TGG | - | Chr6:7347001-7347020 | MsG0680030700.01.T01:CDS | 20.0% |
| !!! | TGAATTTTATTGATGGAATT+TGG | - | Chr6:7346952-7346971 | MsG0680030700.01.T01:CDS | 20.0% |
| ! | AGGCTCTTATATTTAAGAAT+AGG | - | Chr6:7346357-7346376 | MsG0680030700.01.T01:CDS | 25.0% |
| ! | GATCTTGTTAAATTCAAGAA+AGG | - | Chr6:7346510-7346529 | MsG0680030700.01.T01:CDS | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | - | Chr6:7346534-7346553 | MsG0680030700.01.T01:CDS | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | - | Chr6:7346945-7346964 | MsG0680030700.01.T01:CDS | 25.0% |
| AGGGAAAGATAAACAAGAAT+TGG | - | Chr6:7347343-7347362 | MsG0680030700.01.T01:CDS | 30.0% | |
| ATTTGCAATAGCAGATATCA+TGG | + | Chr6:7346616-7346635 | None:intergenic | 30.0% | |
| CCAGTTATTGAAAAGTTGTT+GGG | - | Chr6:7347155-7347174 | MsG0680030700.01.T01:intron | 30.0% | |
| CTCTTACATAAAACATGTGT+TGG | - | Chr6:7346325-7346344 | MsG0680030700.01.T01:CDS | 30.0% | |
| GTATTATGCTAAAGTTGGAA+AGG | - | Chr6:7346539-7346558 | MsG0680030700.01.T01:CDS | 30.0% | |
| TAACACTAACTTTCCACAAA+AGG | - | Chr6:7346282-7346301 | MsG0680030700.01.T01:CDS | 30.0% | |
| TCAATATCTTGAGATTGCAA+AGG | - | Chr6:7347268-7347287 | MsG0680030700.01.T01:CDS | 30.0% | |
| TCCAGTTATTGAAAAGTTGT+TGG | - | Chr6:7347154-7347173 | MsG0680030700.01.T01:intron | 30.0% | |
| TCTTGAATTAACAACTGTCA+AGG | - | Chr6:7346659-7346678 | MsG0680030700.01.T01:CDS | 30.0% | |
| ! | AAAGTTTGAAACACTTGCTA+TGG | - | Chr6:7346455-7346474 | MsG0680030700.01.T01:CDS | 30.0% |
| ! | ATGATGATGATGAAGTGAAA+AGG | - | Chr6:7346901-7346920 | MsG0680030700.01.T01:CDS | 30.0% |
| ! | CAACACATGTTTTATGTAAG+AGG | + | Chr6:7346327-7346346 | None:intergenic | 30.0% |
| AAAAGCAAGGTAACTCTTTC+GGG | - | Chr6:7346924-7346943 | MsG0680030700.01.T01:CDS | 35.0% | |
| AACTTGATCCTGCTCTTATT+AGG | - | Chr6:7347027-7347046 | MsG0680030700.01.T01:CDS | 35.0% | |
| AAGCTTTACACCAACAATAG+CGG | - | Chr6:7346386-7346405 | MsG0680030700.01.T01:CDS | 35.0% | |
| AGTTCAATGGAGTCAAAGTT+TGG | - | Chr6:7346205-7346224 | MsG0680030700.01.T01:CDS | 35.0% | |
| ATAAAACATGTGTTGGAACG+AGG | - | Chr6:7346332-7346351 | MsG0680030700.01.T01:CDS | 35.0% | |
| ATCTCTTCTTTCTTCTTCTC+CGG | + | Chr6:7346483-7346502 | None:intergenic | 35.0% | |
| CAAGTGTTTCAAACTTTGCA+GGG | + | Chr6:7346452-7346471 | None:intergenic | 35.0% | |
| GAAAAGCAAGGTAACTCTTT+CGG | - | Chr6:7346923-7346942 | MsG0680030700.01.T01:CDS | 35.0% | |
| GATTGTTCTCTTGATCTTAC+CGG | - | Chr6:7346750-7346769 | MsG0680030700.01.T01:CDS | 35.0% | |
| TACTTAGATGTTGAGTCTCA+TGG | - | Chr6:7347122-7347141 | MsG0680030700.01.T01:intron | 35.0% | |
| TCTTGAGATTGCAAAGGAAA+AGG | - | Chr6:7347274-7347293 | MsG0680030700.01.T01:CDS | 35.0% | |
| TGAAGTGAAAAGGAAAAGCA+AGG | - | Chr6:7346911-7346930 | MsG0680030700.01.T01:CDS | 35.0% | |
| ! | CCCAACAACTTTTCAATAAC+TGG | + | Chr6:7347158-7347177 | None:intergenic | 35.0% |
| ! | CTTTTTCTTCTTCCTTTGAC+CGG | + | Chr6:7346772-7346791 | None:intergenic | 35.0% |
| AAACGGGGTTATCTACTCTA+TGG | - | Chr6:7346567-7346586 | MsG0680030700.01.T01:CDS | 40.0% | |
| AAGTTGGAAAGGCTTGGAAA+CGG | - | Chr6:7346550-7346569 | MsG0680030700.01.T01:CDS | 40.0% | |
| AGAGGAGGAAGCAAAGAAAA+AGG | - | Chr6:7347298-7347317 | MsG0680030700.01.T01:CDS | 40.0% | |
| AGTTCCAAGAAGAAAAGGCA+TGG | - | Chr6:7346245-7346264 | MsG0680030700.01.T01:CDS | 40.0% | |
| ATGCTAAAGTTGGAAAGGCT+TGG | - | Chr6:7346544-7346563 | MsG0680030700.01.T01:CDS | 40.0% | |
| CGACTTTGGCATCAAATTCT+CGG | + | Chr6:7347210-7347229 | None:intergenic | 40.0% | |
| CGGTCAAAGGAAGAAGAAAA+AGG | - | Chr6:7346770-7346789 | MsG0680030700.01.T01:CDS | 40.0% | |
| GATGGAATTTGGTCATCATG+TGG | - | Chr6:7346963-7346982 | MsG0680030700.01.T01:CDS | 40.0% | |
| GATTGCAAAGGAAAAGGAAG+AGG | - | Chr6:7347280-7347299 | MsG0680030700.01.T01:CDS | 40.0% | |
| GCAAGTGTTTCAAACTTTGC+AGG | + | Chr6:7346453-7346472 | None:intergenic | 40.0% | |
| TCAATGGAGTCAAAGTTTGG+TGG | - | Chr6:7346208-7346227 | MsG0680030700.01.T01:CDS | 40.0% | |
| TCTTATTAGGAGAGGAAGGA+TGG | - | Chr6:7347040-7347059 | MsG0680030700.01.T01:CDS | 40.0% | |
| TGCACAGTTCCAAGAAGAAA+AGG | - | Chr6:7346240-7346259 | MsG0680030700.01.T01:CDS | 40.0% | |
| TTGTAGCTATCAAGCGTTCA+AGG | - | Chr6:7347085-7347104 | MsG0680030700.01.T01:intron | 40.0% | |
| ! | AAGAAGAAAAGGCATGGATG+TGG | - | Chr6:7346251-7346270 | MsG0680030700.01.T01:CDS | 40.0% |
| ! | ACATCCATGCCTTTTCTTCT+TGG | + | Chr6:7346252-7346271 | None:intergenic | 40.0% |
| ! | GAACGCTTGATAGCTACAAT+AGG | + | Chr6:7347084-7347103 | None:intergenic | 40.0% |
| !! | TGAAACACTTGCTATGGAAC+CGG | - | Chr6:7346461-7346480 | MsG0680030700.01.T01:CDS | 40.0% |
| AAAGGCTGTGAAAGCTCAAC+TGG | - | Chr6:7347316-7347335 | MsG0680030700.01.T01:CDS | 45.0% | |
| AAATTCTCGGCAACATCAGC+GGG | + | Chr6:7347197-7347216 | None:intergenic | 45.0% | |
| AACCACACAACCGCTATTGT+TGG | + | Chr6:7346399-7346418 | None:intergenic | 45.0% | |
| ACATGTGTTGGAACGAGGAA+AGG | - | Chr6:7346337-7346356 | MsG0680030700.01.T01:CDS | 45.0% | |
| AGTTGGAAAGGCTTGGAAAC+GGG | - | Chr6:7346551-7346570 | MsG0680030700.01.T01:CDS | 45.0% | |
| ATGGTAGATTTCCCAGTTCC+TGG | + | Chr6:7346597-7346616 | None:intergenic | 45.0% | |
| CAAATTCTCGGCAACATCAG+CGG | + | Chr6:7347198-7347217 | None:intergenic | 45.0% | |
| CAAGCAAGCCTCAACATCTT+CGG | + | Chr6:7347237-7347256 | None:intergenic | 45.0% | |
| CTCTTGATCTTACCGGTCAA+AGG | - | Chr6:7346757-7346776 | MsG0680030700.01.T01:CDS | 45.0% | |
| CTGCTCTTATTAGGAGAGGA+AGG | - | Chr6:7347036-7347055 | MsG0680030700.01.T01:CDS | 45.0% | |
| CTTCCTCTCCTAATAAGAGC+AGG | + | Chr6:7347038-7347057 | None:intergenic | 45.0% | |
| CTTCGTTGTCATCCATGCTA+AGG | + | Chr6:7346173-7346192 | None:intergenic | 45.0% | |
| GAGATCGAGGATGAGTTCAA+TGG | - | Chr6:7346192-7346211 | MsG0680030700.01.T01:CDS | 45.0% | |
| GATCCTGCTCTTATTAGGAG+AGG | - | Chr6:7347032-7347051 | MsG0680030700.01.T01:CDS | 45.0% | |
| GGAATTTGGTCATCATGTGG+AGG | - | Chr6:7346966-7346985 | MsG0680030700.01.T01:CDS | 45.0% | |
| TATCTACTCTATGGTCCACC+AGG | - | Chr6:7346576-7346595 | MsG0680030700.01.T01:CDS | 45.0% | |
| TCATCCATGCTAAGGACAAG+CGG | + | Chr6:7346165-7346184 | None:intergenic | 45.0% | |
| TGCAAAGGAAAAGGAAGAGG+AGG | - | Chr6:7347283-7347302 | MsG0680030700.01.T01:CDS | 45.0% | |
| ATAGCGGTTGTGTGGTTGTC+AGG | - | Chr6:7346402-7346421 | MsG0680030700.01.T01:CDS | 50.0% | |
| ATCCATGCTAAGGACAAGCG+GGG | + | Chr6:7346163-7346182 | None:intergenic | 50.0% | |
| CACCAACAATAGCGGTTGTG+TGG | - | Chr6:7346394-7346413 | MsG0680030700.01.T01:CDS | 50.0% | |
| CATCCATGCTAAGGACAAGC+GGG | + | Chr6:7346164-7346183 | None:intergenic | 50.0% | |
| GGATGACAACGAAGAGATCG+AGG | - | Chr6:7346179-7346198 | MsG0680030700.01.T01:CDS | 50.0% | |
| GGTCATCATGTGGAGGAGAA+CGG | - | Chr6:7346973-7346992 | MsG0680030700.01.T01:CDS | 50.0% | |
| GTAGATTTCCCAGTTCCTGG+TGG | + | Chr6:7346594-7346613 | None:intergenic | 50.0% | |
| GTTGGAAAGGCTTGGAAACG+GGG | - | Chr6:7346552-7346571 | MsG0680030700.01.T01:CDS | 50.0% | |
| TAGCGGTTGTGTGGTTGTCA+GGG | - | Chr6:7346403-7346422 | MsG0680030700.01.T01:CDS | 50.0% | |
| TCTATGGTCCACCAGGAACT+GGG | - | Chr6:7346583-7346602 | MsG0680030700.01.T01:CDS | 50.0% | |
| TGAAAGCTCAACTGGTGGCA+GGG | - | Chr6:7347324-7347343 | MsG0680030700.01.T01:CDS | 50.0% | |
| ! | ACATCTTCGGTGGTCGACTT+TGG | + | Chr6:7347224-7347243 | None:intergenic | 50.0% |
| ! | TGAGATCGCGATGCCTTTTG+TGG | + | Chr6:7346298-7346317 | None:intergenic | 50.0% |
| ATCCCCGCTTGTCCTTAGCA+TGG | - | Chr6:7346158-7346177 | MsG0680030700.01.T01:CDS | 55.0% | |
| CTCTATGGTCCACCAGGAAC+TGG | - | Chr6:7346582-7346601 | MsG0680030700.01.T01:CDS | 55.0% | |
| GCAAGCCTCAACATCTTCGG+TGG | + | Chr6:7347234-7347253 | None:intergenic | 55.0% | |
| GGCTGTGAAAGCTCAACTGG+TGG | - | Chr6:7347319-7347338 | MsG0680030700.01.T01:CDS | 55.0% | |
| GTCGACCACCGAAGATGTTG+AGG | - | Chr6:7347226-7347245 | MsG0680030700.01.T01:intron | 55.0% | |
| GTGAAAGCTCAACTGGTGGC+AGG | - | Chr6:7347323-7347342 | MsG0680030700.01.T01:CDS | 55.0% | |
| TGCTAAGGACAAGCGGGGAT+TGG | + | Chr6:7346158-7346177 | None:intergenic | 55.0% | |
| CGGTTGTGTGGTTGTCAGGG+TGG | - | Chr6:7346406-7346425 | MsG0680030700.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 7346144 | 7347376 | 7346144 | ID=MsG0680030700.01;Name=MsG0680030700.01 |
| Chr6 | mRNA | 7346144 | 7347376 | 7346144 | ID=MsG0680030700.01.T01;Parent=MsG0680030700.01;Name=MsG0680030700.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|348 |
| Chr6 | exon | 7347248 | 7347376 | 7347248 | ID=MsG0680030700.01.T01:exon:6743;Parent=MsG0680030700.01.T01 |
| Chr6 | exon | 7346144 | 7347061 | 7346144 | ID=MsG0680030700.01.T01:exon:6742;Parent=MsG0680030700.01.T01 |
| Chr6 | CDS | 7347248 | 7347376 | 7347248 | ID=MsG0680030700.01.T01:cds;Parent=MsG0680030700.01.T01 |
| Chr6 | CDS | 7346144 | 7347061 | 7346144 | ID=MsG0680030700.01.T01:cds;Parent=MsG0680030700.01.T01 |
| Gene Sequence |
| Protein sequence |
