AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016910.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016910.01.T01 MTR_3g098070 83.010 206 3 1 15 220 322 495 6.99e-113 332
MsG0380016910.01.T01 MTR_3g098090 79.612 206 10 1 15 220 325 498 2.46e-107 318
MsG0380016910.01.T01 MTR_8g095440 72.330 206 25 1 15 220 323 496 8.00e-100 299
MsG0380016910.01.T01 MTR_1g096490 61.765 204 42 4 15 214 323 494 1.95e-78 244
MsG0380016910.01.T01 MTR_5g099240 57.789 199 50 2 15 211 317 483 2.37e-72 228
MsG0380016910.01.T01 MTR_5g099240 57.789 199 50 2 15 211 389 555 1.13e-71 228
MsG0380016910.01.T01 MTR_1g055255 53.171 205 60 2 15 215 417 589 1.71e-67 218
MsG0380016910.01.T01 MTR_1g041150 54.187 203 58 3 15 214 411 581 1.13e-66 215
MsG0380016910.01.T01 MTR_7g106710 51.256 199 65 1 15 213 428 594 6.02e-62 203
MsG0380016910.01.T01 MTR_1g054865 55.367 177 47 1 15 191 454 598 7.54e-59 195
MsG0380016910.01.T01 MTR_7g106710 61.268 142 55 0 15 156 428 569 1.32e-57 191
MsG0380016910.01.T01 MTR_8g099095 49.198 187 62 2 15 200 359 513 4.03e-52 176
MsG0380016910.01.T01 MTR_5g009830 49.724 181 58 2 15 194 359 507 4.09e-51 173
MsG0380016910.01.T01 MTR_1g026190 50.829 181 56 2 15 194 375 523 9.21e-51 172
MsG0380016910.01.T01 MTR_0028s0170 50.829 181 56 2 15 194 371 519 2.03e-50 171
MsG0380016910.01.T01 MTR_3g051770 50.829 181 63 2 15 194 376 531 9.83e-50 170
MsG0380016910.01.T01 MTR_5g089320 48.619 181 60 2 15 194 361 509 5.43e-48 165
MsG0380016910.01.T01 MTR_5g092810 48.889 180 59 2 15 193 385 532 6.34e-48 165
MsG0380016910.01.T01 MTR_4g132070 48.333 180 60 2 15 193 384 531 4.94e-47 162
MsG0380016910.01.T01 MTR_4g132040 46.111 180 63 3 15 193 389 535 1.92e-40 145
MsG0380016910.01.T01 MTR_4g107490 42.857 196 75 5 2 194 354 515 8.49e-40 143
MsG0380016910.01.T01 MTR_7g068710 39.011 182 77 2 15 194 349 498 1.39e-33 126
MsG0380016910.01.T01 MTR_1g052530 35.000 180 87 4 15 194 345 494 8.02e-30 115
MsG0380016910.01.T01 MTR_7g091890 36.813 182 79 3 15 193 351 499 3.48e-29 114
MsG0380016910.01.T01 MTR_4g066660 35.000 180 84 2 15 193 365 512 9.19e-29 113
MsG0380016910.01.T01 MTR_8g095440 81.356 59 11 0 15 73 323 381 1.36e-24 100
MsG0380016910.01.T01 MTR_5g089440 33.166 199 59 5 3 195 51 181 1.22e-23 94.0
MsG0380016910.01.T01 MTR_5g088320 34.848 132 83 2 16 144 1 132 1.22e-19 82.0
MsG0380016910.01.T01 MTR_7g087610 34.091 132 84 2 16 144 1 132 1.99e-19 81.6
MsG0380016910.01.T01 MTR_6g025320 34.091 132 84 2 16 144 1 132 4.20e-19 80.9
MsG0380016910.01.T01 MTR_1g076650 30.899 178 88 3 16 190 1 146 8.28e-19 80.1
MsG0380016910.01.T01 MTR_5g022030 30.198 202 95 6 16 209 395 558 5.15e-17 79.3
MsG0380016910.01.T01 MTR_1g041285 34.091 132 84 2 16 144 1 132 6.61e-17 75.1
MsG0380016910.01.T01 MTR_5g009830 64.286 56 20 0 15 70 359 414 2.86e-16 77.0
MsG0380016910.01.T01 MTR_7g074020 34.884 129 81 2 20 145 23 151 3.14e-16 73.6
MsG0380016910.01.T01 MTR_5g022030 36.283 113 65 2 16 121 395 507 9.23e-16 75.9
MsG0380016910.01.T01 MTR_7g074020 33.094 139 90 2 20 155 23 161 1.23e-15 72.0
MsG0380016910.01.T01 MTR_6g007613 33.333 129 83 2 20 145 22 150 4.66e-15 70.5
MsG0380016910.01.T01 MTR_7g106710 60.656 61 24 0 15 75 428 488 1.45e-14 72.4
MsG0380016910.01.T01 MTR_6g007613 32.558 129 84 2 20 145 22 150 1.90e-14 68.6
MsG0380016910.01.T01 MTR_8g066630 31.818 132 84 2 19 144 9 140 2.29e-14 68.6
MsG0380016910.01.T01 MTR_4g112460 27.536 138 95 3 19 151 3 140 2.70e-12 63.2
MsG0380016910.01.T01 MTR_1g071150 29.008 131 91 1 16 144 1 131 6.68e-12 61.6
MsG0380016910.01.T01 MTR_4g067270 29.808 104 70 2 28 129 6 108 2.16e-11 60.1
MsG0380016910.01.T01 MTR_0168s0120 33.333 96 61 2 52 144 1 96 3.18e-11 58.9
MsG0380016910.01.T01 MTR_6g025320 33.333 96 61 2 52 144 1 96 3.18e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016910.01.T01 AT1G35670 63.158 209 41 4 15 220 319 494 1.57e-80 249
MsG0380016910.01.T01 AT4G09570 63.054 203 39 4 15 214 318 487 9.45e-78 242
MsG0380016910.01.T01 AT4G35310 55.779 199 54 2 15 211 390 556 7.74e-70 223
MsG0380016910.01.T01 AT4G35310 55.779 199 54 2 15 211 390 556 7.74e-70 223
MsG0380016910.01.T01 AT2G17290 56.186 194 53 1 15 208 378 539 8.87e-70 223
MsG0380016910.01.T01 AT2G17290 56.186 194 53 1 15 208 378 539 8.87e-70 223
MsG0380016910.01.T01 AT5G23580 61.798 178 36 1 15 192 315 460 1.77e-69 220
MsG0380016910.01.T01 AT4G38230 56.995 193 48 2 15 207 173 330 4.50e-69 215
MsG0380016910.01.T01 AT4G38230 56.701 194 49 2 15 208 317 475 2.12e-67 215
MsG0380016910.01.T01 AT4G38230 56.701 194 49 2 15 208 317 475 2.12e-67 215
MsG0380016910.01.T01 AT4G38230 56.701 194 49 2 15 208 347 505 3.49e-67 215
MsG0380016910.01.T01 AT5G04870 57.778 180 44 1 15 194 443 590 4.29e-64 209
MsG0380016910.01.T01 AT3G10660 56.667 180 46 1 15 194 479 626 1.97e-62 205
MsG0380016910.01.T01 AT3G10660 56.667 180 46 1 15 194 479 626 1.97e-62 205
MsG0380016910.01.T01 AT2G38910 56.757 185 47 2 15 198 427 579 4.13e-62 203
MsG0380016910.01.T01 AT5G19360 52.486 181 53 2 15 194 361 509 7.13e-53 178
MsG0380016910.01.T01 AT5G12180 51.934 181 54 2 15 194 366 514 1.49e-52 177
MsG0380016910.01.T01 AT1G76040 49.724 181 58 2 15 194 166 314 2.04e-52 172
MsG0380016910.01.T01 AT1G76040 49.724 181 58 2 15 194 166 314 2.04e-52 172
MsG0380016910.01.T01 AT1G50700 50.000 186 60 2 15 199 366 519 6.82e-51 172
MsG0380016910.01.T01 AT3G20410 50.276 181 57 2 15 194 384 532 1.26e-50 172
MsG0380016910.01.T01 AT3G20410 50.276 181 57 2 15 194 384 532 1.26e-50 172
MsG0380016910.01.T01 AT1G76040 49.724 181 58 2 15 194 404 552 1.75e-50 172
MsG0380016910.01.T01 AT4G21940 48.333 180 60 2 15 193 394 541 2.59e-48 166
MsG0380016910.01.T01 AT4G21940 48.333 180 60 2 15 193 394 541 2.77e-48 166
MsG0380016910.01.T01 AT4G04720 48.619 181 60 2 15 194 372 520 3.70e-48 166
MsG0380016910.01.T01 AT4G04720 48.619 181 60 2 15 194 372 520 3.70e-48 166
MsG0380016910.01.T01 AT4G23650 45.833 192 69 3 14 202 370 529 8.53e-48 164
MsG0380016910.01.T01 AT4G04710 48.333 180 60 2 15 193 311 458 6.79e-46 158
MsG0380016910.01.T01 AT4G04710 48.333 180 60 2 15 193 325 472 7.99e-46 158
MsG0380016910.01.T01 AT4G04710 48.333 180 60 2 15 193 338 485 1.12e-45 158
MsG0380016910.01.T01 AT1G50700 43.868 212 60 3 15 199 366 545 2.09e-45 158
MsG0380016910.01.T01 AT4G04710 47.802 182 60 3 15 193 338 487 7.59e-44 153
MsG0380016910.01.T01 AT4G04695 43.386 189 74 2 15 202 324 480 1.11e-41 147
MsG0380016910.01.T01 AT1G61950 44.068 177 66 2 16 191 393 537 4.76e-40 144
MsG0380016910.01.T01 AT4G04740 42.541 181 71 2 15 194 361 509 9.56e-39 140
MsG0380016910.01.T01 AT4G04740 42.541 181 71 2 15 194 361 509 9.56e-39 140
MsG0380016910.01.T01 AT4G04740 42.541 181 71 2 15 194 361 509 9.56e-39 140
MsG0380016910.01.T01 AT4G04740 42.541 181 71 2 15 194 361 509 9.56e-39 140
MsG0380016910.01.T01 AT4G04740 42.541 181 71 2 15 194 361 509 9.56e-39 140
MsG0380016910.01.T01 AT4G04740 42.541 181 71 2 15 194 361 509 9.56e-39 140
MsG0380016910.01.T01 AT1G76040 63.366 101 37 0 15 115 404 504 7.98e-38 137
MsG0380016910.01.T01 AT4G04740 51.128 133 64 1 15 146 361 493 1.13e-37 137
MsG0380016910.01.T01 AT4G04700 44.633 177 65 2 16 191 325 469 3.09e-36 133
MsG0380016910.01.T01 AT1G50700 62.626 99 37 0 15 113 366 464 9.62e-35 129
MsG0380016910.01.T01 AT4G21940 61.616 99 38 0 15 113 394 492 1.68e-34 128
MsG0380016910.01.T01 AT3G51850 41.209 182 73 2 15 194 347 496 2.06e-34 128
MsG0380016910.01.T01 AT1G18890 41.209 182 73 3 15 194 356 505 2.06e-34 129
MsG0380016910.01.T01 AT5G12480 39.665 179 79 3 15 193 258 407 4.21e-34 126
MsG0380016910.01.T01 AT1G74740 37.500 208 95 4 15 219 352 527 5.41e-34 127
MsG0380016910.01.T01 AT5G12480 39.444 180 80 3 15 194 352 502 2.97e-33 125
MsG0380016910.01.T01 AT3G51850 47.794 136 69 1 15 148 347 482 8.20e-33 124
MsG0380016910.01.T01 AT5G19450 40.331 181 77 4 15 194 350 500 5.92e-32 122
MsG0380016910.01.T01 AT5G19450 40.331 181 77 4 15 194 350 500 5.92e-32 122
MsG0380016910.01.T01 AT3G57530 35.912 181 83 2 15 194 356 504 2.24e-29 114
MsG0380016910.01.T01 AT2G41860 36.667 180 84 4 15 194 347 496 8.92e-28 110
MsG0380016910.01.T01 AT2G41860 36.667 180 84 4 15 194 347 496 9.56e-28 110
MsG0380016910.01.T01 AT2G31500 34.254 181 90 3 15 194 359 511 3.87e-27 108
MsG0380016910.01.T01 AT2G27030 27.941 204 109 4 16 213 1 172 8.07e-20 83.6
MsG0380016910.01.T01 AT3G56800 34.848 132 83 2 16 144 1 132 1.87e-19 81.6
MsG0380016910.01.T01 AT2G27030 34.848 132 83 2 16 144 1 132 1.87e-19 81.6
MsG0380016910.01.T01 AT2G41110 34.848 132 83 2 16 144 1 132 1.87e-19 81.6
MsG0380016910.01.T01 AT5G21274 34.091 132 84 2 16 144 1 132 3.76e-19 80.9
MsG0380016910.01.T01 AT3G43810 34.091 132 84 2 16 144 1 132 4.40e-19 80.9
MsG0380016910.01.T01 AT5G37780 34.091 132 84 2 16 144 1 132 7.54e-19 80.1
MsG0380016910.01.T01 AT1G66410 34.091 132 84 2 16 144 1 132 7.54e-19 80.1
MsG0380016910.01.T01 AT3G43810 29.775 178 90 3 16 190 1 146 1.74e-18 80.9
MsG0380016910.01.T01 AT2G17890 33.758 157 90 5 16 162 404 556 6.39e-17 79.3
MsG0380016910.01.T01 AT5G66210 33.548 155 93 4 16 162 358 510 1.34e-16 78.2
MsG0380016910.01.T01 AT5G66210 33.548 155 93 4 16 162 358 510 1.34e-16 78.2
MsG0380016910.01.T01 AT2G41110 31.944 144 83 3 16 144 1 144 3.67e-16 73.6
MsG0380016910.01.T01 AT5G66210 35.115 131 76 3 16 137 358 488 4.17e-16 77.0
MsG0380016910.01.T01 AT4G14640 29.885 174 87 3 20 190 6 147 4.85e-16 72.8
MsG0380016910.01.T01 AT3G22930 29.714 175 88 3 19 190 27 169 4.99e-16 73.2
MsG0380016910.01.T01 AT4G36070 31.847 157 93 5 16 162 367 519 2.86e-15 74.3
MsG0380016910.01.T01 AT5G37780 30.612 147 84 3 16 144 1 147 3.23e-15 70.9
MsG0380016910.01.T01 AT4G36070 31.847 157 93 5 16 162 367 519 3.36e-15 74.3
MsG0380016910.01.T01 AT2G35890 48.235 85 43 1 15 98 425 509 3.59e-15 74.3
MsG0380016910.01.T01 AT2G35890 48.235 85 43 1 15 98 425 509 3.59e-15 74.3
MsG0380016910.01.T01 AT1G32250 32.609 138 84 3 16 144 5 142 4.54e-15 70.5
MsG0380016910.01.T01 AT5G66210 34.513 113 67 2 16 121 358 470 4.95e-15 73.6
MsG0380016910.01.T01 AT4G14640 35.922 103 65 1 20 121 6 108 1.91e-14 67.8
MsG0380016910.01.T01 AT2G41100 28.788 132 76 2 15 128 54 185 3.60e-14 70.1
MsG0380016910.01.T01 AT2G41100 28.788 132 76 2 15 128 54 185 3.60e-14 70.1
MsG0380016910.01.T01 AT2G41100 28.788 132 76 2 15 128 54 185 3.60e-14 70.1
MsG0380016910.01.T01 AT1G05990 28.736 174 82 4 28 193 6 145 3.94e-14 67.8
MsG0380016910.01.T01 AT3G50360 32.812 128 83 2 20 144 20 147 4.27e-14 68.2
MsG0380016910.01.T01 AT2G41100 28.788 132 76 2 15 128 89 220 5.39e-14 70.1
MsG0380016910.01.T01 AT2G41100 28.395 162 94 5 16 155 1 162 1.06e-12 66.2
MsG0380016910.01.T01 AT2G41100 28.788 132 76 2 15 128 89 220 5.39e-14 70.1
MsG0380016910.01.T01 AT2G41100 28.395 162 94 5 16 155 1 162 1.06e-12 66.2
MsG0380016910.01.T01 AT1G66410 31.690 142 84 3 16 144 1 142 6.22e-14 67.4
MsG0380016910.01.T01 AT3G22930 34.951 103 66 1 19 120 27 129 8.51e-14 66.2
MsG0380016910.01.T01 AT5G37780 25.980 204 90 4 16 190 1 172 1.05e-13 67.0
MsG0380016910.01.T01 AT5G37780 33.645 107 68 2 41 144 13 119 1.03e-12 63.5
MsG0380016910.01.T01 AT2G41090 26.230 183 99 3 16 196 1 149 3.47e-12 63.2
MsG0380016910.01.T01 AT3G59440 26.347 167 95 2 28 194 52 190 3.63e-12 63.2
MsG0380016910.01.T01 AT4G14640 29.412 153 73 3 41 190 9 129 4.57e-12 61.6
MsG0380016910.01.T01 AT4G03290 29.240 171 87 4 28 193 6 147 1.45e-11 60.8
MsG0380016910.01.T01 AT2G43290 31.481 108 68 1 28 129 66 173 3.08e-11 61.2
MsG0380016910.01.T01 AT3G43810 33.333 96 61 2 52 144 1 96 3.33e-11 58.9
MsG0380016910.01.T01 AT3G43810 33.333 96 61 2 52 144 1 96 3.33e-11 58.9
MsG0380016910.01.T01 AT4G37010 30.833 120 80 2 28 144 32 151 4.65e-11 59.7
MsG0380016910.01.T01 AT4G37010 30.833 120 80 2 28 144 28 147 4.70e-11 59.7

Find 49 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGGTACAATAACTTAAT+TGG 0.163697 3:-89341926 None:intergenic
CAGGATGGACAGATAGATTA+TGG 0.239141 3:+89341799 MsG0380016910.01.T01:CDS
GTCTGAAATCAAGGATCTTA+TGG 0.315370 3:+89341271 MsG0380016910.01.T01:CDS
AGAGATGCTCTTGGAATCAT+AGG 0.326999 3:+89341895 MsG0380016910.01.T01:CDS
CAAGCAGCTTGTAAAGAGTT+TGG 0.331886 3:+89341567 MsG0380016910.01.T01:CDS
GCGAGTAGGATCTGAACTTA+TGG 0.366687 3:+89341247 MsG0380016910.01.T01:CDS
GTGGTTTGAAGGAGTTGTTC+AGG 0.370841 3:+89341165 MsG0380016910.01.T01:CDS
AATAACGGGACACTCGACTA+TGG 0.387377 3:+89341429 MsG0380016910.01.T01:CDS
CTTAATTTCAGAGATGCTCT+TGG 0.398320 3:+89341886 MsG0380016910.01.T01:CDS
AGAAAGGGAAATGGTGGGAT+TGG 0.421767 3:+89341841 MsG0380016910.01.T01:CDS
ACCATTTCCCTTTCTCATCA+TGG 0.441065 3:-89341833 None:intergenic
AGGGAAATGGTGGGATTGGA+AGG 0.456027 3:+89341845 MsG0380016910.01.T01:CDS
ATGAACTTCATGAATGAGAA+AGG 0.460537 3:+89340299 MsG0380016910.01.T01:CDS
TTCTCATACTTTGACAAAGA+TGG 0.461712 3:+89341516 MsG0380016910.01.T01:CDS
AGGATGGACAGATAGATTAT+GGG 0.471913 3:+89341800 MsG0380016910.01.T01:CDS
GGAAGAAATCGGTGGTTTGA+AGG 0.472947 3:+89341154 MsG0380016910.01.T01:CDS
AGGCAGATATTGATAATAAC+GGG 0.478956 3:+89341415 MsG0380016910.01.T01:intron
AATAGTCAAGGAAATTGATC+AGG 0.491177 3:+89341614 MsG0380016910.01.T01:CDS
ATGAATGAGAAAGGCAGGGC+AGG 0.499420 3:+89340308 MsG0380016910.01.T01:CDS
ACTTATGGAGTCTGAAATCA+AGG 0.499535 3:+89341262 MsG0380016910.01.T01:CDS
ACTTCATGAATGAGAAAGGC+AGG 0.508000 3:+89340303 MsG0380016910.01.T01:CDS
CTCTTGGAATCATAGGCAAT+GGG 0.508398 3:+89341902 MsG0380016910.01.T01:CDS
ATTTGCTGCCATGATGAGAA+AGG 0.511800 3:+89341825 MsG0380016910.01.T01:CDS
CTTAAATAAGCTGGAGAGAG+AGG 0.512244 3:+89341476 MsG0380016910.01.T01:CDS
CAGGCAGATATTGATAATAA+CGG 0.514142 3:+89341414 MsG0380016910.01.T01:intron
TACTGTGCACTTAAATAAGC+TGG 0.515783 3:+89341467 MsG0380016910.01.T01:CDS
TGAGAAAGGCAGGGCAGGAA+AGG 0.516500 3:+89340313 MsG0380016910.01.T01:CDS
ATGCTTGATGCTGATAATAG+TGG 0.517517 3:+89341188 MsG0380016910.01.T01:CDS
AGGCTTTCTGAGGAAGAAAT+CGG 0.517602 3:+89341143 MsG0380016910.01.T01:CDS
TACTTTGACAAAGATGGTAG+TGG 0.526154 3:+89341522 MsG0380016910.01.T01:CDS
ACATTGGAAGAGTTAAAAGA+AGG 0.535574 3:+89341218 MsG0380016910.01.T01:CDS
TACTTATTCATAGGTTATTG+CGG 0.539341 3:+89341118 MsG0380016910.01.T01:intron
GAAATTAAGTGTGCTTGTCA+TGG 0.542134 3:-89341872 None:intergenic
TAATAGTGGAACTATAACAT+TGG 0.547061 3:+89341202 MsG0380016910.01.T01:CDS
GCTCTTGGAATCATAGGCAA+TGG 0.547759 3:+89341901 MsG0380016910.01.T01:CDS
GAGAGAGGAAAATCTGTTGT+CGG 0.550846 3:+89341491 MsG0380016910.01.T01:CDS
TTTGCTGCCATGATGAGAAA+GGG 0.567288 3:+89341826 MsG0380016910.01.T01:CDS
CCTTGACTATTTCATCAATG+TGG 0.578652 3:-89341602 None:intergenic
GCCATGATGAGAAAGGGAAA+TGG 0.581983 3:+89341832 MsG0380016910.01.T01:CDS
CCACATTGATGAAATAGTCA+AGG 0.599431 3:+89341602 MsG0380016910.01.T01:CDS
AGCTGCTTGAATCTCGTCGA+TGG 0.603722 3:-89341553 None:intergenic
CTTTCTGAGGAAGAAATCGG+TGG 0.621226 3:+89341146 MsG0380016910.01.T01:CDS
ATGATGAGAAAGGGAAATGG+TGG 0.623759 3:+89341835 MsG0380016910.01.T01:CDS
TATTGCGGAGAGGCTTTCTG+AGG 0.626593 3:+89341133 MsG0380016910.01.T01:CDS
GGATGGACAGATAGATTATG+GGG 0.631359 3:+89341801 MsG0380016910.01.T01:CDS
AAAGAAGGCTTAAAGCGAGT+AGG 0.631853 3:+89341233 MsG0380016910.01.T01:CDS
ATTCATAGGTTATTGCGGAG+AGG 0.635091 3:+89341123 MsG0380016910.01.T01:intron
CTTCATGAATGAGAAAGGCA+GGG 0.660949 3:+89340304 MsG0380016910.01.T01:CDS
TGATGAGAAAGGGAAATGGT+GGG 0.663749 3:+89341836 MsG0380016910.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTCAATTTTATAATTA+GGG - Chr3:89341364-89341383 None:intergenic 10.0%
!! CTAATTATAAAATTGACAAT+TGG + Chr3:89341363-89341382 MsG0380016910.01.T01:intron 15.0%
!!! ATATAGTTTGTTATTGTTTT+AGG + Chr3:89341306-89341325 MsG0380016910.01.T01:intron 15.0%
!!! CAATTGTCAATTTTATAATT+AGG - Chr3:89341365-89341384 None:intergenic 15.0%
!!! TTGTTTAATTTTCTTTCTTT+GGG - Chr3:89340579-89340598 None:intergenic 15.0%
!! TGTTATGTATACTTATTCAT+AGG + Chr3:89341109-89341128 MsG0380016910.01.T01:intron 20.0%
!!! CATTGACATTTGTATTTTTT+CGG + Chr3:89340804-89340823 MsG0380016910.01.T01:intron 20.0%
!!! GTTGTTTAATTTTCTTTCTT+TGG - Chr3:89340580-89340599 None:intergenic 20.0%
!!! TTTAAATCGGTTTATTTGAA+CGG + Chr3:89340434-89340453 MsG0380016910.01.T01:intron 20.0%
! ATACATAACAAGAAACATCA+TGG - Chr3:89341099-89341118 None:intergenic 25.0%
! ATTTGAACGGTAATTAACTA+CGG + Chr3:89340447-89340466 MsG0380016910.01.T01:intron 25.0%
! TACTTATTCATAGGTTATTG+CGG + Chr3:89341118-89341137 MsG0380016910.01.T01:intron 25.0%
! TCACATGCAAGATTAATATA+AGG - Chr3:89341394-89341413 None:intergenic 25.0%
!! CTCTTTTATTCCAACAAAAA+AGG - Chr3:89340547-89340566 None:intergenic 25.0%
!! TAATAGTGGAACTATAACAT+TGG + Chr3:89341202-89341221 MsG0380016910.01.T01:CDS 25.0%
!! TTACACTGTAATGATAATGT+TGG - Chr3:89341732-89341751 None:intergenic 25.0%
!!! ACATCTTAGTTTGTGAATAT+TGG + Chr3:89340946-89340965 MsG0380016910.01.T01:intron 25.0%
!!! CTTTTTTGTTGGAATAAAAG+AGG + Chr3:89340545-89340564 MsG0380016910.01.T01:intron 25.0%
!!! TCAAAAGGTATTCCAAAAAT+TGG - Chr3:89340357-89340376 None:intergenic 25.0%
AAAAAAGGATGTGATGCATA+GGG - Chr3:89340532-89340551 None:intergenic 30.0%
AATAGTCAAGGAAATTGATC+AGG + Chr3:89341614-89341633 MsG0380016910.01.T01:CDS 30.0%
ACATTGGAAGAGTTAAAAGA+AGG + Chr3:89341218-89341237 MsG0380016910.01.T01:CDS 30.0%
AGATATGACAATTGCTCTTT+AGG - Chr3:89340491-89340510 None:intergenic 30.0%
ATATTAATCTTGCATGTGAC+AGG + Chr3:89341395-89341414 MsG0380016910.01.T01:intron 30.0%
ATGAACTTCATGAATGAGAA+AGG + Chr3:89340299-89340318 MsG0380016910.01.T01:CDS 30.0%
ATGCATAAAACACAATGTTC+AGG - Chr3:89340637-89340656 None:intergenic 30.0%
CCTAAAAAGCAATTGTCAAA+AGG - Chr3:89340372-89340391 None:intergenic 30.0%
GACCTTAAAATCAGAAAAGA+AGG + Chr3:89340658-89340677 MsG0380016910.01.T01:intron 30.0%
GTACACATTCAACAGTTAAA+AGG - Chr3:89340610-89340629 None:intergenic 30.0%
TTATCATAGCAAATCAGCAA+TGG - Chr3:89340840-89340859 None:intergenic 30.0%
TTCTCATACTTTGACAAAGA+TGG + Chr3:89341516-89341535 MsG0380016910.01.T01:CDS 30.0%
! AGGCAGATATTGATAATAAC+GGG + Chr3:89341415-89341434 MsG0380016910.01.T01:intron 30.0%
! CAGGCAGATATTGATAATAA+CGG + Chr3:89341414-89341433 MsG0380016910.01.T01:intron 30.0%
! GTATTCCAAAAATTGGCTTA+AGG - Chr3:89340350-89340369 None:intergenic 30.0%
! TGATGAAAATTTTGTGTTGC+AGG + Chr3:89341780-89341799 MsG0380016910.01.T01:CDS 30.0%
! TGCCTTCTTTTCTGATTTTA+AGG - Chr3:89340663-89340682 None:intergenic 30.0%
!!! CCTTTTGACAATTGCTTTTT+AGG + Chr3:89340369-89340388 MsG0380016910.01.T01:intron 30.0%
AACGGTAATTAACTACGGTT+TGG + Chr3:89340452-89340471 MsG0380016910.01.T01:intron 35.0%
AGCATCACAAGTAAAGAAAC+TGG - Chr3:89341339-89341358 None:intergenic 35.0%
AGGATGGACAGATAGATTAT+GGG + Chr3:89341800-89341819 MsG0380016910.01.T01:CDS 35.0%
ATGCTTGATGCTGATAATAG+TGG + Chr3:89341188-89341207 MsG0380016910.01.T01:CDS 35.0%
CAAAAAAGGATGTGATGCAT+AGG - Chr3:89340533-89340552 None:intergenic 35.0%
CCACATTGATGAAATAGTCA+AGG + Chr3:89341602-89341621 MsG0380016910.01.T01:CDS 35.0%
CCTTGACTATTTCATCAATG+TGG - Chr3:89341605-89341624 None:intergenic 35.0%
CTTAATTTCAGAGATGCTCT+TGG + Chr3:89341886-89341905 MsG0380016910.01.T01:CDS 35.0%
GAAATTAAGTGTGCTTGTCA+TGG - Chr3:89341875-89341894 None:intergenic 35.0%
TACTGTGCACTTAAATAAGC+TGG + Chr3:89341467-89341486 MsG0380016910.01.T01:CDS 35.0%
TACTTTGACAAAGATGGTAG+TGG + Chr3:89341522-89341541 MsG0380016910.01.T01:CDS 35.0%
TCCTGACTGAGAAGTTAAAA+AGG + Chr3:89341036-89341055 MsG0380016910.01.T01:intron 35.0%
TGTAATAATGCCTGAACATC+AGG - Chr3:89340929-89340948 None:intergenic 35.0%
! ACTTATGGAGTCTGAAATCA+AGG + Chr3:89341262-89341281 MsG0380016910.01.T01:CDS 35.0%
! GAAAATTTTGTGTTGCAGGA+TGG + Chr3:89341784-89341803 MsG0380016910.01.T01:CDS 35.0%
! GTCTGAAATCAAGGATCTTA+TGG + Chr3:89341271-89341290 MsG0380016910.01.T01:CDS 35.0%
! TCCAAAAATTGGCTTAAGGA+CGG - Chr3:89340346-89340365 None:intergenic 35.0%
!! CCGATTTAAAAAGTGCCAAA+CGG - Chr3:89340424-89340443 None:intergenic 35.0%
!! CCGTTTGGCACTTTTTAAAT+CGG + Chr3:89340421-89340440 MsG0380016910.01.T01:intron 35.0%
!!! TCCTTTTTAACTTCTCAGTC+AGG - Chr3:89341040-89341059 None:intergenic 35.0%
!!! TGCATCACATCCTTTTTTGT+TGG + Chr3:89340534-89340553 MsG0380016910.01.T01:intron 35.0%
AAAGAAGGCTTAAAGCGAGT+AGG + Chr3:89341233-89341252 MsG0380016910.01.T01:CDS 40.0%
ACCATTTCCCTTTCTCATCA+TGG - Chr3:89341836-89341855 None:intergenic 40.0%
ACTTCATGAATGAGAAAGGC+AGG + Chr3:89340303-89340322 MsG0380016910.01.T01:CDS 40.0%
AGAGATGCTCTTGGAATCAT+AGG + Chr3:89341895-89341914 MsG0380016910.01.T01:CDS 40.0%
AGAGGTCTAGATACAAGCAA+TGG - Chr3:89341001-89341020 None:intergenic 40.0%
ATGATGAGAAAGGGAAATGG+TGG + Chr3:89341835-89341854 MsG0380016910.01.T01:CDS 40.0%
ATTCATAGGTTATTGCGGAG+AGG + Chr3:89341123-89341142 MsG0380016910.01.T01:intron 40.0%
CAAGCAGCTTGTAAAGAGTT+TGG + Chr3:89341567-89341586 MsG0380016910.01.T01:CDS 40.0%
CAGGATGGACAGATAGATTA+TGG + Chr3:89341799-89341818 MsG0380016910.01.T01:CDS 40.0%
CCAAAAATAGCAAGAACGTG+AGG - Chr3:89340716-89340735 None:intergenic 40.0%
CTCTTGGAATCATAGGCAAT+GGG + Chr3:89341902-89341921 MsG0380016910.01.T01:CDS 40.0%
CTTAAATAAGCTGGAGAGAG+AGG + Chr3:89341476-89341495 MsG0380016910.01.T01:CDS 40.0%
CTTCATGAATGAGAAAGGCA+GGG + Chr3:89340304-89340323 MsG0380016910.01.T01:CDS 40.0%
GAGAGAGGAAAATCTGTTGT+CGG + Chr3:89341491-89341510 MsG0380016910.01.T01:CDS 40.0%
GGATGGACAGATAGATTATG+GGG + Chr3:89341801-89341820 MsG0380016910.01.T01:CDS 40.0%
TGATGAGAAAGGGAAATGGT+GGG + Chr3:89341836-89341855 MsG0380016910.01.T01:CDS 40.0%
TGTATCTAGACCTCTATCAG+AGG + Chr3:89341006-89341025 MsG0380016910.01.T01:intron 40.0%
TGTTGGAATAAAAGAGGCCT+AGG + Chr3:89340551-89340570 MsG0380016910.01.T01:intron 40.0%
TTTGCTGCCATGATGAGAAA+GGG + Chr3:89341826-89341845 MsG0380016910.01.T01:CDS 40.0%
! AGGCTTTCTGAGGAAGAAAT+CGG + Chr3:89341143-89341162 MsG0380016910.01.T01:CDS 40.0%
! ATCAGAAAAGAAGGCATGCA+TGG + Chr3:89340667-89340686 MsG0380016910.01.T01:intron 40.0%
! ATTTGCTGCCATGATGAGAA+AGG + Chr3:89341825-89341844 MsG0380016910.01.T01:CDS 40.0%
! TCAGAAAAGAAGGCATGCAT+GGG + Chr3:89340668-89340687 MsG0380016910.01.T01:intron 40.0%
! TCCGTCCTTAAGCCAATTTT+TGG + Chr3:89340342-89340361 MsG0380016910.01.T01:intron 40.0%
! TTTTCTTTCTTTGGGCTCCT+AGG - Chr3:89340571-89340590 None:intergenic 40.0%
!!! CCTCACGTTCTTGCTATTTT+TGG + Chr3:89340713-89340732 MsG0380016910.01.T01:intron 40.0%
AATGCCTGAACATCAGGTCA+AGG - Chr3:89340923-89340942 None:intergenic 45.0%
ACAACCTTGACCTGATGTTC+AGG + Chr3:89340916-89340935 MsG0380016910.01.T01:intron 45.0%
GCCATGATGAGAAAGGGAAA+TGG + Chr3:89341832-89341851 MsG0380016910.01.T01:CDS 45.0%
GCGAGTAGGATCTGAACTTA+TGG + Chr3:89341247-89341266 MsG0380016910.01.T01:CDS 45.0%
GCTCTTGGAATCATAGGCAA+TGG + Chr3:89341901-89341920 MsG0380016910.01.T01:CDS 45.0%
GGAAGAAATCGGTGGTTTGA+AGG + Chr3:89341154-89341173 MsG0380016910.01.T01:CDS 45.0%
GTGGTTTGAAGGAGTTGTTC+AGG + Chr3:89341165-89341184 MsG0380016910.01.T01:CDS 45.0%
! AAAGAAGGCATGCATGGGTT+CGG + Chr3:89340673-89340692 MsG0380016910.01.T01:intron 45.0%
! AATAACGGGACACTCGACTA+TGG + Chr3:89341429-89341448 MsG0380016910.01.T01:CDS 45.0%
! ACTACGGTTTGGCACTTTCT+AGG + Chr3:89340463-89340482 MsG0380016910.01.T01:intron 45.0%
! AGAAAGGGAAATGGTGGGAT+TGG + Chr3:89341841-89341860 MsG0380016910.01.T01:CDS 45.0%
! CTTTCTGAGGAAGAAATCGG+TGG + Chr3:89341146-89341165 MsG0380016910.01.T01:CDS 45.0%
! TTTGGTTGTTGCTTCGAGCA+AGG + Chr3:89340731-89340750 MsG0380016910.01.T01:intron 45.0%
ACCAGGGTCGGAAGCTAATA+TGG + Chr3:89340757-89340776 MsG0380016910.01.T01:intron 50.0%
AGCTGCTTGAATCTCGTCGA+TGG - Chr3:89341556-89341575 None:intergenic 50.0%
ATGAATGAGAAAGGCAGGGC+AGG + Chr3:89340308-89340327 MsG0380016910.01.T01:CDS 50.0%
GCTTCGAGCAAGGAATACCA+GGG + Chr3:89340741-89340760 MsG0380016910.01.T01:intron 50.0%
GGACAATGTGCCTCTGATAG+AGG - Chr3:89341019-89341038 None:intergenic 50.0%
GGCATCTGCTAACTACCGTT+TGG + Chr3:89340406-89340425 MsG0380016910.01.T01:intron 50.0%
TATTGCGGAGAGGCTTTCTG+AGG + Chr3:89341133-89341152 MsG0380016910.01.T01:CDS 50.0%
TGCTTCGAGCAAGGAATACC+AGG + Chr3:89340740-89340759 MsG0380016910.01.T01:intron 50.0%
! AGGGAAATGGTGGGATTGGA+AGG + Chr3:89341845-89341864 MsG0380016910.01.T01:CDS 50.0%
! ATGCATGGGTTCGGTTCTGA+AGG + Chr3:89340682-89340701 MsG0380016910.01.T01:intron 50.0%
! TCCATATTAGCTTCCGACCC+TGG - Chr3:89340761-89340780 None:intergenic 50.0%
CGAGCAAGGAATACCAGGGT+CGG + Chr3:89340745-89340764 MsG0380016910.01.T01:intron 55.0%
TGAGAAAGGCAGGGCAGGAA+AGG + Chr3:89340313-89340332 MsG0380016910.01.T01:CDS 55.0%
! TTTTAGGCACCTCGCGAGTG+TGG + Chr3:89340385-89340404 MsG0380016910.01.T01:intron 55.0%
TAGCAGATGCCACACTCGCG+AGG - Chr3:89340397-89340416 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 89340299 89341933 89340299 ID=MsG0380016910.01;Name=MsG0380016910.01
Chr3 mRNA 89340299 89341933 89340299 ID=MsG0380016910.01.T01;Parent=MsG0380016910.01;Name=MsG0380016910.01.T01;_AED=0.48;_eAED=0.54;_QI=0|0.33|0.25|1|0.33|0.25|4|0|220
Chr3 exon 89340299 89340340 89340299 ID=MsG0380016910.01.T01:exon:3259;Parent=MsG0380016910.01.T01
Chr3 exon 89341131 89341298 89341131 ID=MsG0380016910.01.T01:exon:3260;Parent=MsG0380016910.01.T01
Chr3 exon 89341417 89341682 89341417 ID=MsG0380016910.01.T01:exon:3261;Parent=MsG0380016910.01.T01
Chr3 exon 89341747 89341933 89341747 ID=MsG0380016910.01.T01:exon:3262;Parent=MsG0380016910.01.T01
Chr3 CDS 89340299 89340340 89340299 ID=MsG0380016910.01.T01:cds;Parent=MsG0380016910.01.T01
Chr3 CDS 89341131 89341298 89341131 ID=MsG0380016910.01.T01:cds;Parent=MsG0380016910.01.T01
Chr3 CDS 89341417 89341682 89341417 ID=MsG0380016910.01.T01:cds;Parent=MsG0380016910.01.T01
Chr3 CDS 89341747 89341933 89341747 ID=MsG0380016910.01.T01:cds;Parent=MsG0380016910.01.T01
Gene Sequence

>MsG0380016910.01.T01

ATGAACTTCATGAATGAGAAAGGCAGGGCAGGAAAGGCTTCAGTTATTGCGGAGAGGCTTTCTGAGGAAGAAATCGGTGGTTTGAAGGAGTTGTTCAGGATGCTTGATGCTGATAATAGTGGAACTATAACATTGGAAGAGTTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCAGATATTGATAATAACGGGACACTCGACTATGGCGAATTCATTGCTGCTACTGTGCACTTAAATAAGCTGGAGAGAGAGGAAAATCTGTTGTCGGCATTCTCATACTTTGACAAAGATGGTAGTGGTTACATAACCATCGACGAGATTCAAGCAGCTTGTAAAGAGTTTGGCTTAGATGATATCCACATTGATGAAATAGTCAAGGAAATTGATCAGGATAATGCAAGTATATTTTTTTTTTTGTTGCTATTAAGAGCTTTCTTTGTAAACTCATTAGTTGCTAACTTGTTTGTTTTTGATGAAAATTTTGTGTTGCAGGATGGACAGATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGAAATGGTGGGATTGGAAGGAGAACCATGACAAGCACACTTAATTTCAGAGATGCTCTTGGAATCATAGGCAATGGGTCCAATTAA

Protein sequence

>MsG0380016910.01.T01

MNFMNEKGRAGKASVIAERLSEEEIGGLKELFRMLDADNSGTITLEELKEGLKRVGSELMESEIKDLMDAADIDNNGTLDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQAACKEFGLDDIHIDEIVKEIDQDNASIFFFLLLLRAFFVNSLVANLFVFDENFVLQDGQIDYGEFAAMMRKGNGGIGRRTMTSTLNFRDALGIIGNGSN*