AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031116.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031116.01.T01 MTR_6g016640 69.912 339 30 6 1 272 1 334 9.48e-152 433
MsG0680031116.01.T01 MTR_6g016635 69.322 339 32 6 1 272 1 334 4.41e-150 429
MsG0680031116.01.T01 MTR_6g016650 87.081 209 20 3 1 207 1 204 2.94e-121 356
MsG0680031116.01.T01 MTR_6g016650 95.522 67 3 0 206 272 268 334 9.00e-38 139
MsG0680031116.01.T01 MTR_7g020820 46.290 283 139 6 1 275 1 278 3.72e-70 225
MsG0680031116.01.T01 MTR_7g020820 82.090 67 12 0 206 272 270 336 7.58e-32 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031116.01.T01 AT3G30775 44.860 214 109 5 1 207 1 212 3.65e-42 151
MsG0680031116.01.T01 AT3G30775 65.217 69 23 1 205 272 275 343 4.18e-21 93.2
MsG0680031116.01.T01 AT3G30775 44.860 214 109 5 1 207 1 212 3.65e-42 151
MsG0680031116.01.T01 AT3G30775 65.217 69 23 1 205 272 275 343 4.18e-21 93.2
MsG0680031116.01.T01 AT5G38710 42.381 210 99 7 1 207 1 191 3.25e-38 140
MsG0680031116.01.T01 AT5G38710 60.870 69 26 1 205 272 254 322 1.20e-19 89.0
MsG0680031116.01.T01 AT5G38710 45.000 180 84 4 31 207 24 191 3.82e-38 140
MsG0680031116.01.T01 AT5G38710 60.870 69 26 1 205 272 254 322 1.11e-19 89.0

Find 78 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGTGATCGTAATCTTAA+AGG 0.228265 6:-14719793 MsG0680031116.01.T01:CDS
TTACGTGGCATGCTTGTTTA+TGG 0.238176 6:-14719841 MsG0680031116.01.T01:CDS
GAATTCCTATGGGATTAAAT+TGG 0.267820 6:-14717375 MsG0680031116.01.T01:intron
CTGTCGTGGACGTTGGAATA+TGG 0.273143 6:-14720007 MsG0680031116.01.T01:CDS
CTGAAGAAATAGAGGTCTTT+TGG 0.288223 6:-14716487 MsG0680031116.01.T01:three_prime_UTR
GAAACTCTCGACAACACTTT+AGG 0.315281 6:+14720385 None:intergenic
GAAGGATGGGAGGAGTTTAA+TGG 0.324027 6:+14720213 None:intergenic
TGAATTGTTCCAAACACAAT+TGG 0.341598 6:+14717460 None:intergenic
GCAGCAAAAGCATATGAAAT+TGG 0.349585 6:-14716661 MsG0680031116.01.T01:CDS
GATGATAACCCAATTGTGTT+TGG 0.350392 6:-14717469 MsG0680031116.01.T01:CDS
TTTCTTCAGCTCTTCTCAAT+AGG 0.352369 6:+14716501 None:intergenic
AAAGCATATGAAATTGGAAT+TGG 0.356339 6:-14716655 MsG0680031116.01.T01:CDS
GGAGGAGTTTAATGGCTTTG+TGG 0.370820 6:+14720221 None:intergenic
TTTCTGCATGCAACGGCTAT+AGG 0.378853 6:-14720032 MsG0680031116.01.T01:CDS
GTTAGCAAGTATATGCCATT+TGG 0.380807 6:-14716548 MsG0680031116.01.T01:three_prime_UTR
GTTGTGATCGTAATCTTAAA+GGG 0.388070 6:-14719792 MsG0680031116.01.T01:CDS
ATGTCAGATGCACTCTCATT+TGG 0.397480 6:-14716593 MsG0680031116.01.T01:three_prime_UTR
TGGCTGCTTCTGGATTTGAT+AGG 0.400035 6:-14716467 MsG0680031116.01.T01:three_prime_UTR
TGCAATCAAATTGTTACAAA+CGG 0.402775 6:-14719980 MsG0680031116.01.T01:CDS
TTGCTGCTGGAAAGAGTATA+AGG 0.405411 6:-14719882 MsG0680031116.01.T01:CDS
ATAGTCTCTCAGCGTCGTTT+AGG 0.405775 6:+14720097 None:intergenic
GACGGTTGTGGTGGTGGTGG+TGG 0.410895 6:+14720144 None:intergenic
TGGTGTGACGGTTGTGGTGG+TGG 0.427223 6:+14720138 None:intergenic
CGGCGGCGGTGGCTGAAGGA+TGG 0.438347 6:+14720199 None:intergenic
TGTGACGGTTGTGGTGGTGG+TGG 0.448290 6:+14720141 None:intergenic
TCATTTGGTTTGAGCAATGC+AGG 0.450112 6:-14716578 MsG0680031116.01.T01:three_prime_UTR
GAATTGTTCCAAACACAATT+GGG 0.452088 6:+14717461 None:intergenic
TGTCGTGGACGTTGGAATAT+GGG 0.452589 6:-14720006 MsG0680031116.01.T01:CDS
AATTAGAAACTTACAGAAGA+TGG 0.452786 6:+14719733 None:intergenic
AAGGGAAGCAACGGCGGCGG+TGG 0.453295 6:+14720188 None:intergenic
GCAATCAAATTGTTACAAAC+GGG 0.457595 6:-14719979 MsG0680031116.01.T01:CDS
GGTCGAGATAAGACGGTTGT+TGG 0.459521 6:+14720118 None:intergenic
GGAGAAGATGCTATTGCTGC+TGG 0.477420 6:-14719895 MsG0680031116.01.T01:CDS
ACCATCTCAACTGGTCCAAA+TGG 0.482748 6:+14716533 None:intergenic
ATAAGGTCTGTTAATGAAGC+TGG 0.484228 6:-14719865 MsG0680031116.01.T01:CDS
AACTTATTTGAAAGATGCTA+AGG 0.486569 6:-14717437 MsG0680031116.01.T01:CDS
GGCGGCGGTGGCTGAAGGAT+GGG 0.493133 6:+14720200 None:intergenic
TAAGGCATAACCATCTCAAC+TGG 0.497185 6:+14716524 None:intergenic
CTTGAATTTGCACAACTATG+TGG 0.497379 6:-14716617 MsG0680031116.01.T01:three_prime_UTR
TTGTACAGAAAGAGCTTGGA+AGG 0.498999 6:-14716333 MsG0680031116.01.T01:intron
AATCTTGAAAGATGCAGTTA+TGG 0.507538 6:-14719956 MsG0680031116.01.T01:CDS
ATAGCCGTTGCATGCAGAAA+CGG 0.509337 6:+14720035 None:intergenic
TGTTCAGCATCAACCAATAG+TGG 0.510458 6:+14717553 None:intergenic
TGAAGCAAACATGCCACTAT+TGG 0.511802 6:-14717566 MsG0680031116.01.T01:intron
ATTCTTTCTAGTAATGCCAT+TGG 0.522940 6:+14717779 None:intergenic
GGAGTTTAATGGCTTTGTGG+TGG 0.525108 6:+14720224 None:intergenic
GAGAAGAGCTGAAGAAATAG+AGG 0.526349 6:-14716495 MsG0680031116.01.T01:three_prime_UTR
TCAGCTCTTCTCAATAGGTA+AGG 0.526405 6:+14716506 None:intergenic
GCAACGGCGGCGGTGGCTGA+AGG 0.535586 6:+14720195 None:intergenic
GCCATTTGGACCAGTTGAGA+TGG 0.538971 6:-14716534 MsG0680031116.01.T01:three_prime_UTR
GGTTGTTGGTGTGACGGTTG+TGG 0.540727 6:+14720132 None:intergenic
TATGTGAAGTAATCAATAGC+TGG 0.545894 6:+14717517 None:intergenic
GATTTGATAGGCAACTCATA+AGG 0.550609 6:-14716455 MsG0680031116.01.T01:intron
AAGGTTGTTCTCTTTCGAGA+AGG 0.560901 6:+14720169 None:intergenic
AGGTTGTTCTCTTTCGAGAA+GGG 0.568003 6:+14720170 None:intergenic
CATATTCCAACGTCCACGAC+AGG 0.571109 6:+14720008 None:intergenic
GGCGGTGGCTGAAGGATGGG+AGG 0.579737 6:+14720203 None:intergenic
GTTAATGAAGCTGGCTTACG+TGG 0.581537 6:-14719856 MsG0680031116.01.T01:CDS
AATCACTGCAATATGTCCAA+TGG 0.585286 6:-14717795 MsG0680031116.01.T01:CDS
ATAGGACCTGTCGTGGACGT+TGG 0.590338 6:-14720014 MsG0680031116.01.T01:CDS
GAGAAGGGAAGCAACGGCGG+CGG 0.592760 6:+14720185 None:intergenic
GTTGCATGCAGAAACGGCTG+AGG 0.594820 6:+14720041 None:intergenic
TGTTGGTGTGACGGTTGTGG+TGG 0.605574 6:+14720135 None:intergenic
TCGTTTAGGTCGAGATAAGA+CGG 0.607879 6:+14720111 None:intergenic
TTCGAGAAGGGAAGCAACGG+CGG 0.611757 6:+14720182 None:intergenic
GATCTTATCAGCGTGGACGT+TGG 0.612929 6:+14720063 None:intergenic
TCTAACCAATTTAATCCCAT+AGG 0.616812 6:+14717370 None:intergenic
GTTGTGCAAATTCAAGCTTG+TGG 0.617097 6:+14716624 None:intergenic
GAAGATGCACATGATAATGA+TGG 0.618481 6:-14719814 MsG0680031116.01.T01:CDS
AAGTGATTTGCTAACATCAA+CGG 0.622647 6:+14719759 None:intergenic
TACAGAAAGAGCTTGGAAGG+AGG 0.640596 6:-14716330 MsG0680031116.01.T01:intron
TAAGACGGTTGTTGGTGTGA+CGG 0.642129 6:+14720126 None:intergenic
TCTTTCGAGAAGGGAAGCAA+CGG 0.645931 6:+14720179 None:intergenic
TAGAAACTTACAGAAGATGG+AGG 0.662988 6:+14719736 None:intergenic
AACGGCTATAGGACCTGTCG+TGG 0.686446 6:-14720021 MsG0680031116.01.T01:CDS
GGCTGAGGATCTTATCAGCG+TGG 0.691125 6:+14720056 None:intergenic
TCAGCCGTTTCTGCATGCAA+CGG 0.701478 6:-14720039 MsG0680031116.01.T01:CDS
CGCTGAGAGACTATTCTCAG+CGG 0.748968 6:-14720088 MsG0680031116.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTATTATTATTATTA+TGG + Chr6:14717362-14717381 None:intergenic 0.0%
!!! TAATAATAAATTAAATATTT+TGG - Chr6:14718130-14718149 MsG0680031116.01.T01:intron 0.0%
!! ATAAAAATATGAAATTGAAA+AGG + Chr6:14719467-14719486 None:intergenic 10.0%
!!! ATTTATATTTTACATAATGT+TGG - Chr6:14718319-14718338 MsG0680031116.01.T01:intron 10.0%
!! AATTAAAAAGGTTAATGAAA+TGG + Chr6:14720184-14720203 None:intergenic 15.0%
!! ACATATATTTCAAATTTAAG+GGG + Chr6:14719825-14719844 None:intergenic 15.0%
!! ATGTCTCAAAATAATTAAAA+AGG + Chr6:14720196-14720215 None:intergenic 15.0%
!! ATTACATATTTACATTCATT+AGG - Chr6:14719431-14719450 MsG0680031116.01.T01:intron 15.0%
!! CACATATATTTCAAATTTAA+GGG + Chr6:14719826-14719845 None:intergenic 15.0%
!! TGTCTCATATTATATATTAT+TGG - Chr6:14717929-14717948 MsG0680031116.01.T01:intron 15.0%
!! TTACATATTTACATTCATTA+GGG - Chr6:14719432-14719451 MsG0680031116.01.T01:intron 15.0%
!!! ATAAAATTTTTTTGTTGTGT+AGG - Chr6:14719906-14719925 MsG0680031116.01.T01:CDS 15.0%
!!! ATTGATTTTTTTTATGTGAT+AGG - Chr6:14718762-14718781 MsG0680031116.01.T01:intron 15.0%
!!! CTATTTTTTAAAAGCAAAAT+TGG - Chr6:14717123-14717142 MsG0680031116.01.T01:intron 15.0%
!!! TAAAATTTTTTTGTTGTGTA+GGG - Chr6:14719907-14719926 MsG0680031116.01.T01:CDS 15.0%
!!! TACTTTTCTAATTTTTTATG+TGG - Chr6:14717454-14717473 MsG0680031116.01.T01:CDS 15.0%
!!! TGAAATGTGTTTTAATATAA+AGG - Chr6:14717317-14717336 MsG0680031116.01.T01:intron 15.0%
!!! TTGTACATTTTAATATGAAT+TGG + Chr6:14718611-14718630 None:intergenic 15.0%
!!! TTTTATTTAAAGAAGAAAAG+AGG - Chr6:14716978-14716997 MsG0680031116.01.T01:intron 15.0%
!! AATAAAACTCTAGTAAGAAA+TGG + Chr6:14718469-14718488 None:intergenic 20.0%
!! ACATTTCACACAAAAAATAT+TGG + Chr6:14717305-14717324 None:intergenic 20.0%
!! ACTTTAAATAAAGATTGAAG+AGG - Chr6:14717259-14717278 MsG0680031116.01.T01:intron 20.0%
!! AGATACATTAATTGAAATCT+TGG + Chr6:14719879-14719898 None:intergenic 20.0%
!! ATCATTATTTCCTTAACTAT+TGG + Chr6:14717487-14717506 None:intergenic 20.0%
!! CATTTCACACAAAAAATATT+GGG + Chr6:14717304-14717323 None:intergenic 20.0%
!! GCACATATATTTCAAATTTA+AGG + Chr6:14719827-14719846 None:intergenic 20.0%
!! TAATAATACAAAGTAGTTGA+TGG + Chr6:14717595-14717614 None:intergenic 20.0%
!! TATTATTATGGTGTAAATGA+GGG + Chr6:14717350-14717369 None:intergenic 20.0%
!! TCATTATTTCCTTAACTATT+GGG + Chr6:14717486-14717505 None:intergenic 20.0%
!! TTATTATTATGGTGTAAATG+AGG + Chr6:14717351-14717370 None:intergenic 20.0%
!!! AAATTTGAGTTTGGTATTTT+TGG - Chr6:14718022-14718041 MsG0680031116.01.T01:intron 20.0%
!!! AGTATTAATTTTCATGATCA+TGG - Chr6:14716909-14716928 MsG0680031116.01.T01:intron 20.0%
!!! AGTGTTTAGAAATTAGATTT+TGG - Chr6:14718400-14718419 MsG0680031116.01.T01:intron 20.0%
!!! ATTTTTCTCATAGTGATTTT+TGG - Chr6:14720234-14720253 MsG0680031116.01.T01:CDS 20.0%
!!! CAAATTTTCTTGTTTTTGAA+TGG - Chr6:14716304-14716323 MsG0680031116.01.T01:three_prime_UTR 20.0%
!!! GAAATTAGATTTTGGTATTT+TGG - Chr6:14718408-14718427 MsG0680031116.01.T01:intron 20.0%
!!! GTGTTTTGTTTATACTAAAT+TGG - Chr6:14718504-14718523 MsG0680031116.01.T01:intron 20.0%
!!! TTTTTAAGTTGCAAAAATCT+TGG - Chr6:14717881-14717900 MsG0680031116.01.T01:intron 20.0%
! AAAGCATATGAAATTGGAAT+TGG - Chr6:14719944-14719963 MsG0680031116.01.T01:CDS 25.0%
! AACTTATTTGAAAGATGCTA+AGG - Chr6:14719162-14719181 MsG0680031116.01.T01:intron 25.0%
! AATAAAGCTCATGTTAGAAA+TGG + Chr6:14718273-14718292 None:intergenic 25.0%
! AATTAGAAACTTACAGAAGA+TGG + Chr6:14716869-14716888 None:intergenic 25.0%
! ACCATTTCTAATGTAATTAG+AGG - Chr6:14718075-14718094 MsG0680031116.01.T01:intron 25.0%
! ACCTCTAATTACATTAGAAA+TGG + Chr6:14718079-14718098 None:intergenic 25.0%
! AGAGAAAATTCAAACAGAAA+AGG + Chr6:14717105-14717124 None:intergenic 25.0%
! CATGTAACAATAAGAATACT+AGG - Chr6:14719849-14719868 MsG0680031116.01.T01:CDS 25.0%
! CATTATTTCCTTAACTATTG+GGG + Chr6:14717485-14717504 None:intergenic 25.0%
! GAAAAAATTGGAATTCCTAT+GGG - Chr6:14719214-14719233 MsG0680031116.01.T01:intron 25.0%
! GAAAATGTAATCATATGTGT+TGG - Chr6:14719552-14719571 MsG0680031116.01.T01:intron 25.0%
! GTGTCAAATGCAAAAAATTA+TGG + Chr6:14718545-14718564 None:intergenic 25.0%
! TAAAGGGTTAATCAGTAAAT+TGG - Chr6:14718046-14718065 MsG0680031116.01.T01:intron 25.0%
! TCGTACATTATTATATGTGT+CGG + Chr6:14719515-14719534 None:intergenic 25.0%
! TCTTCAATAGTATCATGAAT+TGG + Chr6:14719308-14719327 None:intergenic 25.0%
! TGAAAAAATTGGAATTCCTA+TGG - Chr6:14719213-14719232 MsG0680031116.01.T01:intron 25.0%
! TGCAATCAAATTGTTACAAA+CGG - Chr6:14716619-14716638 MsG0680031116.01.T01:three_prime_UTR 25.0%
! TGTATGTCTTGAAAAACATA+AGG - Chr6:14717512-14717531 MsG0680031116.01.T01:CDS 25.0%
!! TTAAAGAAGAAAAGAGGTTT+TGG - Chr6:14716984-14717003 MsG0680031116.01.T01:intron 25.0%
!! TTACATTTTCTTATATGCGT+TGG + Chr6:14719542-14719561 None:intergenic 25.0%
!! TTTTATGAACATTTTTGTGC+TGG - Chr6:14716683-14716702 MsG0680031116.01.T01:intron 25.0%
!!! AGGTTTTGGTCAAATTAATT+TGG - Chr6:14716998-14717017 MsG0680031116.01.T01:intron 25.0%
!!! AGTGTTTTGAAATTTGAGTT+TGG - Chr6:14718013-14718032 MsG0680031116.01.T01:intron 25.0%
!!! AGTTTGGTATTTTTGGATAA+AGG - Chr6:14718029-14718048 MsG0680031116.01.T01:intron 25.0%
!!! ATGTTACTGTTTTAGACAAA+TGG - Chr6:14718223-14718242 MsG0680031116.01.T01:intron 25.0%
!!! ATTTTGGTATTTTGGACAAA+AGG - Chr6:14718416-14718435 MsG0680031116.01.T01:intron 25.0%
!!! GTTTGGTATTTTTGGATAAA+GGG - Chr6:14718030-14718049 MsG0680031116.01.T01:intron 25.0%
!!! TTTTTTGTAGTGTGGTATAA+TGG + Chr6:14718934-14718953 None:intergenic 25.0%
AATCTTGAAAGATGCAGTTA+TGG - Chr6:14716643-14716662 MsG0680031116.01.T01:exon 30.0%
AGATTGACACTTCATATCAA+TGG + Chr6:14719658-14719677 None:intergenic 30.0%
GAATTCCTATGGGATTAAAT+TGG - Chr6:14719224-14719243 MsG0680031116.01.T01:intron 30.0%
GAATTGTTCCAAACACAATT+GGG + Chr6:14719141-14719160 None:intergenic 30.0%
GACAAAGTTGTTGTAATCTT+TGG + Chr6:14719004-14719023 None:intergenic 30.0%
GATTGACACTTCATATCAAT+GGG + Chr6:14719657-14719676 None:intergenic 30.0%
GCAATCAAATTGTTACAAAC+GGG - Chr6:14716620-14716639 MsG0680031116.01.T01:three_prime_UTR 30.0%
GCACATGTTAAAACAAGTAT+TGG - Chr6:14717534-14717553 MsG0680031116.01.T01:CDS 30.0%
GTGTCAATCTTTAGATTGAA+TGG - Chr6:14719668-14719687 MsG0680031116.01.T01:intron 30.0%
GTTGAGATTAATACATGCAA+TGG + Chr6:14717802-14717821 None:intergenic 30.0%
GTTGGCATTGTAACAAAAAT+TGG - Chr6:14718372-14718391 MsG0680031116.01.T01:intron 30.0%
GTTGTGATCGTAATCTTAAA+GGG - Chr6:14716807-14716826 MsG0680031116.01.T01:intron 30.0%
TATGGGATTAAATTGGTTAG+AGG - Chr6:14719231-14719250 MsG0680031116.01.T01:intron 30.0%
TATGTGAAGTAATCAATAGC+TGG + Chr6:14719085-14719104 None:intergenic 30.0%
TCCATGGTAAATTGAATGAA+GGG + Chr6:14718876-14718895 None:intergenic 30.0%
TCTAACCAATTTAATCCCAT+AGG + Chr6:14719232-14719251 None:intergenic 30.0%
TGAAAATCACTTTCTTCTTG+TGG + Chr6:14718972-14718991 None:intergenic 30.0%
TGAATTGTTCCAAACACAAT+TGG + Chr6:14719142-14719161 None:intergenic 30.0%
TTCCATGGTAAATTGAATGA+AGG + Chr6:14718877-14718896 None:intergenic 30.0%
! ATTCTTTCTAGTAATGCCAT+TGG + Chr6:14718823-14718842 None:intergenic 30.0%
! TATGTCTACAGAAAGTACAT+TGG - Chr6:14719260-14719279 MsG0680031116.01.T01:intron 30.0%
! TATTTTGTACAGAAAGAGCT+TGG - Chr6:14720262-14720281 MsG0680031116.01.T01:CDS 30.0%
!! AAGTGATTTGCTAACATCAA+CGG + Chr6:14716843-14716862 None:intergenic 30.0%
!! AGATTCTTGATGATCTTTTG+TGG + Chr6:14716344-14716363 None:intergenic 30.0%
!! GATTCTTGATGATCTTTTGT+GGG + Chr6:14716343-14716362 None:intergenic 30.0%
!! TTTCTATTTCTGGAAGGAAT+TGG + Chr6:14717571-14717590 None:intergenic 30.0%
!!! GGTTTTTTTACACGTGATTT+TGG + Chr6:14716196-14716215 None:intergenic 30.0%
!!! TTTTTTGTTGTGTAGGGAAT+TGG - Chr6:14719913-14719932 MsG0680031116.01.T01:CDS 30.0%
AACCACATTGTACTTCAACT+AGG + Chr6:14718164-14718183 None:intergenic 35.0%
AATCACTGCAATATGTCCAA+TGG - Chr6:14718804-14718823 MsG0680031116.01.T01:intron 35.0%
ACACAAGCTGCTGAAAAAAT+TGG - Chr6:14719202-14719221 MsG0680031116.01.T01:intron 35.0%
ACATTGTACTTCAACTAGGT+GGG + Chr6:14718160-14718179 None:intergenic 35.0%
ACCCTTCATTCAATTTACCA+TGG - Chr6:14718872-14718891 MsG0680031116.01.T01:intron 35.0%
ACTTTCTTCTTGTGGTGTAA+TGG + Chr6:14718964-14718983 None:intergenic 35.0%
AGGTTCATTAGTACGTAGTT+TGG - Chr6:14718436-14718455 MsG0680031116.01.T01:intron 35.0%
ATAAGGTCTGTTAATGAAGC+TGG - Chr6:14716734-14716753 MsG0680031116.01.T01:intron 35.0%
ATGTCTGATACTGATATACG+TGG + Chr6:14719778-14719797 None:intergenic 35.0%
CTTGAATTTGCACAACTATG+TGG - Chr6:14719982-14720001 MsG0680031116.01.T01:CDS 35.0%
GAATAAGTGATCTTCTACGA+TGG - Chr6:14718839-14718858 MsG0680031116.01.T01:intron 35.0%
GACATTGAGTCATATATCGT+TGG - Chr6:14717985-14718004 MsG0680031116.01.T01:intron 35.0%
GATGATAACCCAATTGTGTT+TGG - Chr6:14719130-14719149 MsG0680031116.01.T01:intron 35.0%
GATTTGATAGGCAACTCATA+AGG - Chr6:14720144-14720163 MsG0680031116.01.T01:CDS 35.0%
GGTTGTGATCGTAATCTTAA+AGG - Chr6:14716806-14716825 MsG0680031116.01.T01:intron 35.0%
GTGATGAGTATGAATTGAGT+TGG - Chr6:14717766-14717785 MsG0680031116.01.T01:intron 35.0%
GTTAGCAAGTATATGCCATT+TGG - Chr6:14720051-14720070 MsG0680031116.01.T01:CDS 35.0%
TAGAAACTTACAGAAGATGG+AGG + Chr6:14716866-14716885 None:intergenic 35.0%
TAGTTGAAGTACAATGTGGT+TGG - Chr6:14718163-14718182 MsG0680031116.01.T01:intron 35.0%
TCAAAAATCGAATTGCGTGA+AGG + Chr6:14718710-14718729 None:intergenic 35.0%
TGCTACACAAACATTGAATC+AGG - Chr6:14719403-14719422 MsG0680031116.01.T01:intron 35.0%
TTTCTTCAGCTCTTCTCAAT+AGG + Chr6:14720101-14720120 None:intergenic 35.0%
TTTGGTCTAATAATGTAGCG+TGG - Chr6:14717016-14717035 MsG0680031116.01.T01:intron 35.0%
! CTGAAGAAATAGAGGTCTTT+TGG - Chr6:14720112-14720131 MsG0680031116.01.T01:CDS 35.0%
! GAAGATGCACATGATAATGA+TGG - Chr6:14716785-14716804 MsG0680031116.01.T01:intron 35.0%
! GCAGCAAAAGCATATGAAAT+TGG - Chr6:14719938-14719957 MsG0680031116.01.T01:CDS 35.0%
! GGACTTGATTCTGAGAAAAT+TGG + Chr6:14718913-14718932 None:intergenic 35.0%
! TTAAACTAGTTTGTGCCTCA+TGG - Chr6:14717655-14717674 MsG0680031116.01.T01:intron 35.0%
!! AACGTGTGTGTTTTATTGTG+AGG - Chr6:14717715-14717734 MsG0680031116.01.T01:intron 35.0%
!! ACGCAATTCGATTTTTGAAG+TGG - Chr6:14718712-14718731 MsG0680031116.01.T01:intron 35.0%
!! AGTTGATGGCTTTCTATTTC+TGG + Chr6:14717581-14717600 None:intergenic 35.0%
!! GAGAAGTTTGCTAATGGAAA+AGG - Chr6:14719368-14719387 MsG0680031116.01.T01:intron 35.0%
!! TTGCTTGAGAAGTTTGCTAA+TGG - Chr6:14719362-14719381 MsG0680031116.01.T01:intron 35.0%
!! TTTCAAATTTAAGGGGTGTC+TGG + Chr6:14719818-14719837 None:intergenic 35.0%
!!! GTTCTGGTTTTTTTGTAGTG+TGG + Chr6:14718942-14718961 None:intergenic 35.0%
AAAATCGAATTGCGTGAAGG+TGG + Chr6:14718707-14718726 None:intergenic 40.0%
AACAACACGTTCGTACTCAT+TGG - Chr6:14718574-14718593 MsG0680031116.01.T01:intron 40.0%
AACCACATTGTACATCAGCT+AGG + Chr6:14718355-14718374 None:intergenic 40.0%
AACCACATTGTCCTTAAGCT+AGG + Chr6:14717960-14717979 None:intergenic 40.0%
AAGGTTGTTCTCTTTCGAGA+AGG + Chr6:14716433-14716452 None:intergenic 40.0%
ACATTGTACATCAGCTAGGT+GGG + Chr6:14718351-14718370 None:intergenic 40.0%
ACATTGTCCTTAAGCTAGGT+GGG + Chr6:14717956-14717975 None:intergenic 40.0%
AGAAGTAGCATGACTTGAAC+TGG + Chr6:14717844-14717863 None:intergenic 40.0%
AGGTTGTTCTCTTTCGAGAA+GGG + Chr6:14716432-14716451 None:intergenic 40.0%
ATGTCAGATGCACTCTCATT+TGG - Chr6:14720006-14720025 MsG0680031116.01.T01:CDS 40.0%
ATTGTACTTCAACTAGGTGG+GGG + Chr6:14718158-14718177 None:intergenic 40.0%
CACATTGTACTTCAACTAGG+TGG + Chr6:14718161-14718180 None:intergenic 40.0%
CACCTAGTTGAAGTACAATG+TGG - Chr6:14718159-14718178 MsG0680031116.01.T01:intron 40.0%
CATTGTACTTCAACTAGGTG+GGG + Chr6:14718159-14718178 None:intergenic 40.0%
GAAACTCTCGACAACACTTT+AGG + Chr6:14716217-14716236 None:intergenic 40.0%
GAGAAGAGCTGAAGAAATAG+AGG - Chr6:14720104-14720123 MsG0680031116.01.T01:CDS 40.0%
GTTGTGCAAATTCAAGCTTG+TGG + Chr6:14719978-14719997 None:intergenic 40.0%
TAAGGCATAACCATCTCAAC+TGG + Chr6:14720078-14720097 None:intergenic 40.0%
TAGCTGATGTACAATGTGGT+TGG - Chr6:14718354-14718373 MsG0680031116.01.T01:intron 40.0%
TAGCTTAAGGACAATGTGGT+TGG - Chr6:14717959-14717978 MsG0680031116.01.T01:intron 40.0%
TCAGCTCTTCTCAATAGGTA+AGG + Chr6:14720096-14720115 None:intergenic 40.0%
TCGTTTAGGTCGAGATAAGA+CGG + Chr6:14716491-14716510 None:intergenic 40.0%
TCTTGGAATCATGTGACAGA+CGG - Chr6:14717898-14717917 MsG0680031116.01.T01:intron 40.0%
TGAAGCAAACATGCCACTAT+TGG - Chr6:14719033-14719052 MsG0680031116.01.T01:intron 40.0%
TGTTCAGCATCAACCAATAG+TGG + Chr6:14719049-14719068 None:intergenic 40.0%
TTACGTGGCATGCTTGTTTA+TGG - Chr6:14716758-14716777 MsG0680031116.01.T01:intron 40.0%
TTCTTGTGGTGTAATGGTTC+TGG + Chr6:14718958-14718977 None:intergenic 40.0%
TTGTACAGAAAGAGCTTGGA+AGG - Chr6:14720266-14720285 MsG0680031116.01.T01:CDS 40.0%
! AAGTACATTGGCTGAGTCTT+TGG - Chr6:14719272-14719291 MsG0680031116.01.T01:intron 40.0%
! ATGGTTTAGTTGTGGGTTGT+GGG - Chr6:14717674-14717693 MsG0680031116.01.T01:intron 40.0%
! TTGCTGCTGGAAAGAGTATA+AGG - Chr6:14716717-14716736 MsG0680031116.01.T01:intron 40.0%
! TTTTTGAATGGCAACTCGTG+TGG - Chr6:14716316-14716335 MsG0680031116.01.T01:three_prime_UTR 40.0%
!! GATGGCTTTCTATTTCTGGA+AGG + Chr6:14717577-14717596 None:intergenic 40.0%
!! TCATTTGGTTTGAGCAATGC+AGG - Chr6:14720021-14720040 MsG0680031116.01.T01:CDS 40.0%
!!! GCTTTGTGGTGGTTTTGAAA+CGG + Chr6:14716367-14716386 None:intergenic 40.0%
ACCATCTCAACTGGTCCAAA+TGG + Chr6:14720069-14720088 None:intergenic 45.0%
ATAGCCGTTGCATGCAGAAA+CGG + Chr6:14716567-14716586 None:intergenic 45.0%
ATAGTCTCTCAGCGTCGTTT+AGG + Chr6:14716505-14716524 None:intergenic 45.0%
CAACCCACAACTAAACCATG+AGG + Chr6:14717673-14717692 None:intergenic 45.0%
CACATTGTACATCAGCTAGG+TGG + Chr6:14718352-14718371 None:intergenic 45.0%
CACATTGTCCTTAAGCTAGG+TGG + Chr6:14717957-14717976 None:intergenic 45.0%
CACCTAGCTGATGTACAATG+TGG - Chr6:14718350-14718369 MsG0680031116.01.T01:intron 45.0%
CACCTAGCTTAAGGACAATG+TGG - Chr6:14717955-14717974 MsG0680031116.01.T01:intron 45.0%
CGTTCGTACTCATTGGATCA+AGG - Chr6:14718581-14718600 MsG0680031116.01.T01:intron 45.0%
GAAGGATGGGAGGAGTTTAA+TGG + Chr6:14716389-14716408 None:intergenic 45.0%
GTGCCTCATGGTTTAGTTGT+GGG - Chr6:14717667-14717686 MsG0680031116.01.T01:intron 45.0%
TAAGACGGTTGTTGGTGTGA+CGG + Chr6:14716476-14716495 None:intergenic 45.0%
TACAGAAAGAGCTTGGAAGG+AGG - Chr6:14720269-14720288 MsG0680031116.01.T01:CDS 45.0%
TATTGGTCCCACCTAGCTTA+AGG - Chr6:14717946-14717965 MsG0680031116.01.T01:intron 45.0%
TCATGCAGTCAGCACATTCA+TGG + Chr6:14718671-14718690 None:intergenic 45.0%
TCTTTCGAGAAGGGAAGCAA+CGG + Chr6:14716423-14716442 None:intergenic 45.0%
TGACACTGACACGTAGACAT+TGG - Chr6:14719731-14719750 MsG0680031116.01.T01:intron 45.0%
TGGACTCACCCCAATAGTTA+AGG - Chr6:14717474-14717493 MsG0680031116.01.T01:CDS 45.0%
TGGCTGCTTCTGGATTTGAT+AGG - Chr6:14720132-14720151 MsG0680031116.01.T01:CDS 45.0%
TGTCGTGGACGTTGGAATAT+GGG - Chr6:14716593-14716612 MsG0680031116.01.T01:three_prime_UTR 45.0%
TGTGCCTCATGGTTTAGTTG+TGG - Chr6:14717666-14717685 MsG0680031116.01.T01:intron 45.0%
TTGGCTGAGTCTTTGGATCT+AGG - Chr6:14719279-14719298 MsG0680031116.01.T01:intron 45.0%
TTGTACTTCAACTAGGTGGG+GGG + Chr6:14718157-14718176 None:intergenic 45.0%
TTTCTGCATGCAACGGCTAT+AGG - Chr6:14716567-14716586 MsG0680031116.01.T01:three_prime_UTR 45.0%
! CATGGTTTAGTTGTGGGTTG+TGG - Chr6:14717673-14717692 MsG0680031116.01.T01:intron 45.0%
! GGAGGAGTTTAATGGCTTTG+TGG + Chr6:14716381-14716400 None:intergenic 45.0%
! GTTAATGAAGCTGGCTTACG+TGG - Chr6:14716743-14716762 MsG0680031116.01.T01:intron 45.0%
! TGGTTTAGTTGTGGGTTGTG+GGG - Chr6:14717675-14717694 MsG0680031116.01.T01:intron 45.0%
!! GGAGTTTAATGGCTTTGTGG+TGG + Chr6:14716378-14716397 None:intergenic 45.0%
!! GGTAGAGAGTCTTGTTTCCA+TGG + Chr6:14718892-14718911 None:intergenic 45.0%
CATATTCCAACGTCCACGAC+AGG + Chr6:14716594-14716613 None:intergenic 50.0%
CGCTGAGAGACTATTCTCAG+CGG - Chr6:14716511-14716530 MsG0680031116.01.T01:three_prime_UTR 50.0%
CTGTCGTGGACGTTGGAATA+TGG - Chr6:14716592-14716611 MsG0680031116.01.T01:three_prime_UTR 50.0%
GATCTTATCAGCGTGGACGT+TGG + Chr6:14716539-14716558 None:intergenic 50.0%
GCCATTTGGACCAGTTGAGA+TGG - Chr6:14720065-14720084 MsG0680031116.01.T01:CDS 50.0%
GGAGAAGATGCTATTGCTGC+TGG - Chr6:14716704-14716723 MsG0680031116.01.T01:intron 50.0%
GGTCGAGATAAGACGGTTGT+TGG + Chr6:14716484-14716503 None:intergenic 50.0%
GGTGTCTGGTTGATCGATGT+GGG + Chr6:14719804-14719823 None:intergenic 50.0%
GTCAGCACATTCATGGCAGT+TGG + Chr6:14718664-14718683 None:intergenic 50.0%
TACATCAGCTAGGTGGGAGT+GGG + Chr6:14718345-14718364 None:intergenic 50.0%
TCAGCCGTTTCTGCATGCAA+CGG - Chr6:14716560-14716579 MsG0680031116.01.T01:three_prime_UTR 50.0%
!! AGAGGTCTTTTGGCTGCTTC+TGG - Chr6:14720122-14720141 MsG0680031116.01.T01:CDS 50.0%
AACGGCTATAGGACCTGTCG+TGG - Chr6:14716578-14716597 MsG0680031116.01.T01:three_prime_UTR 55.0%
ATAGGACCTGTCGTGGACGT+TGG - Chr6:14716585-14716604 MsG0680031116.01.T01:three_prime_UTR 55.0%
GGCTGAGGATCTTATCAGCG+TGG + Chr6:14716546-14716565 None:intergenic 55.0%
GGGTGTCTGGTTGATCGATG+TGG + Chr6:14719805-14719824 None:intergenic 55.0%
GGTTGTTGGTGTGACGGTTG+TGG + Chr6:14716470-14716489 None:intergenic 55.0%
GTACATCAGCTAGGTGGGAG+TGG + Chr6:14718346-14718365 None:intergenic 55.0%
GTTGCATGCAGAAACGGCTG+AGG + Chr6:14716561-14716580 None:intergenic 55.0%
TGTTGGTGTGACGGTTGTGG+TGG + Chr6:14716467-14716486 None:intergenic 55.0%
TTCGAGAAGGGAAGCAACGG+CGG + Chr6:14716420-14716439 None:intergenic 55.0%
!! GTGTTGGTGTCGTCGCATGT+CGG - Chr6:14719568-14719587 MsG0680031116.01.T01:intron 55.0%
TGGTGTGACGGTTGTGGTGG+TGG + Chr6:14716464-14716483 None:intergenic 60.0%
!! TGTGACGGTTGTGGTGGTGG+TGG + Chr6:14716461-14716480 None:intergenic 60.0%
!! TGTGGTGGTGGTGGTGGAGA+AGG + Chr6:14716452-14716471 None:intergenic 60.0%
GAGAAGGGAAGCAACGGCGG+CGG + Chr6:14716417-14716436 None:intergenic 65.0%
!! GACGGTTGTGGTGGTGGTGG+TGG + Chr6:14716458-14716477 None:intergenic 65.0%
AAGGGAAGCAACGGCGGCGG+TGG + Chr6:14716414-14716433 None:intergenic 70.0%
GGCGGCGGTGGCTGAAGGAT+GGG + Chr6:14716402-14716421 None:intergenic 70.0%
GGCGGTGGCTGAAGGATGGG+AGG + Chr6:14716399-14716418 None:intergenic 70.0%
CGGCGGCGGTGGCTGAAGGA+TGG + Chr6:14716403-14716422 None:intergenic 75.0%
GCAACGGCGGCGGTGGCTGA+AGG + Chr6:14716407-14716426 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 14716177 14720444 14716177 ID=MsG0680031116.01;Name=MsG0680031116.01
Chr6 mRNA 14716177 14720444 14716177 ID=MsG0680031116.01.T01;Parent=MsG0680031116.01;Name=MsG0680031116.01.T01;_AED=0.32;_eAED=0.32;_QI=146|0.5|0.6|1|0.75|0.6|5|363|288
Chr6 exon 14716177 14716347 14716177 ID=MsG0680031116.01.T01:exon:10040;Parent=MsG0680031116.01.T01
Chr6 exon 14716456 14716693 14716456 ID=MsG0680031116.01.T01:exon:10039;Parent=MsG0680031116.01.T01
Chr6 exon 14717376 14717583 14717376 ID=MsG0680031116.01.T01:exon:10038;Parent=MsG0680031116.01.T01
Chr6 exon 14717777 14717837 14717777 ID=MsG0680031116.01.T01:exon:10037;Parent=MsG0680031116.01.T01
Chr6 exon 14719747 14720444 14719747 ID=MsG0680031116.01.T01:exon:10036;Parent=MsG0680031116.01.T01
Chr6 five_prime_UTR 14720299 14720444 14720299 ID=MsG0680031116.01.T01:five_prime_utr;Parent=MsG0680031116.01.T01
Chr6 CDS 14719747 14720298 14719747 ID=MsG0680031116.01.T01:cds;Parent=MsG0680031116.01.T01
Chr6 CDS 14717777 14717837 14717777 ID=MsG0680031116.01.T01:cds;Parent=MsG0680031116.01.T01
Chr6 CDS 14717376 14717583 14717376 ID=MsG0680031116.01.T01:cds;Parent=MsG0680031116.01.T01
Chr6 CDS 14716648 14716693 14716648 ID=MsG0680031116.01.T01:cds;Parent=MsG0680031116.01.T01
Chr6 three_prime_UTR 14716456 14716647 14716456 ID=MsG0680031116.01.T01:three_prime_utr;Parent=MsG0680031116.01.T01
Chr6 three_prime_UTR 14716177 14716347 14716177 ID=MsG0680031116.01.T01:three_prime_utr;Parent=MsG0680031116.01.T01
Gene Sequence

>MsG0680031116.01.T01

ATGGCAACTCGTGTGGTCCCACAAAAGATCATCAAGAATCTCCGTTTCAAAACCACCACAAAGCCATTAAACTCCTCCCATCCTTCAGCCACCGCCGCCGTTGCTTCCCTTCTCGAAAGAGAACAACCTTCTCCACCACCACCACCACAACCGTCACACCAACAACCGTCTTATCTCGACCTAAACGACGCTGAGAGACTATTCTCAGCGGTTCCAACGTCCACGCTGATAAGATCCTCAGCCGTTTCTGCATGCAACGGCTATAGGACCTGTCGTGGACGTTGGAATATGGGCTATGCAATCAAATTGTTACAAACGGGAATCTTGAAAGATGCAGTTATGGCAGTTACAAAGAGAACATTTTATGAACATTTTTGTGCTGGAGAAGATGCTATTGCTGCTGGAAAGAGTATAAGGTCTGTTAATGAAGCTGGCTTACGTGGCATGCTTGTTTATGGTGTTGAAGATGCACATGATAATGATGGTTGTGATCGTAATCTTAAAGGGTTTCTTCATACCGTTGATGTTAGCAAATCACTTCCTCCATCTTCTGTGAGTTTTGTGATTGTGAAAATCACTGCAATATGTCCAATGGCATTACTAGAAAGAATAACAAACATGCCACTATTGGTTGATGCTGAACACACTACTGTTCAACCAGCTATTGATTACTTCACATACTCTTCAGCAATTATGCATAACAAAGATGATAACCCAATTGTGTTTGGAACAATTCAAACTTATTTGAAAGATGCTAAGGAGAGATTGTTTCTTGCAACACAAGCTGCTGAAAAAATTGGAATTCCTATGGGATTAAATTGGGAATTGGCTGCAGCAAAAGCATATGAAATTGGAATTGGAAAGTGA
Protein sequence

>MsG0680031116.01.T01

MATRVVPQKIIKNLRFKTTTKPLNSSHPSATAAVASLLEREQPSPPPPPQPSHQQPSYLDLNDAERLFSAVPTSTLIRSSAVSACNGYRTCRGRWNMGYAIKLLQTGILKDAVMAVTKRTFYEHFCAGEDAIAAGKSIRSVNEAGLRGMLVYGVEDAHDNDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMALLERITNMPLLVDAEHTTVQPAIDYFTYSSAIMHNKDDNPIVFGTIQTYLKDAKERLFLATQAAEKIGIPMGLNWELAAAKAYEIGIGK*