AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015739.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015739.01.T01 MTR_3g075510 92.188 64 5 0 58 121 150 213 5.65e-35 127
MsG0380015739.01.T01 MTR_3g075510 82.979 47 7 1 1 46 1 47 1.97e-16 74.3
MsG0380015739.01.T01 MTR_3g075510 92.188 64 5 0 58 121 150 213 6.99e-35 127
MsG0380015739.01.T01 MTR_3g075510 82.979 47 7 1 1 46 1 47 2.00e-16 74.3
MsG0380015739.01.T01 MTR_7g091880 50.000 60 30 0 58 117 144 203 1.15e-14 69.3
MsG0380015739.01.T01 MTR_1g052515 48.333 60 31 0 58 117 140 199 2.04e-14 68.6
MsG0380015739.01.T01 MTR_5g096820 41.667 60 35 0 58 117 152 211 1.88e-11 60.1
MsG0380015739.01.T01 MTR_5g096820 47.826 46 24 0 72 117 166 211 6.70e-11 58.5
MsG0380015739.01.T03 MTR_3g075510 77.055 523 47 9 9 463 226 743 0.0 778
MsG0380015739.01.T03 MTR_3g075510 72.397 413 41 9 9 353 226 633 0.0 560
MsG0380015739.01.T03 MTR_1g052515 44.767 516 212 9 9 458 216 724 9.57e-130 393
MsG0380015739.01.T03 MTR_4g115330 41.651 521 215 13 9 459 153 654 5.11e-122 371
MsG0380015739.01.T03 MTR_4g115330 42.065 523 210 14 9 459 278 779 5.61e-121 372
MsG0380015739.01.T03 MTR_7g091880 47.529 425 179 10 70 458 338 754 6.16e-115 355
MsG0380015739.01.T03 MTR_5g096820 47.666 407 185 11 70 458 348 744 1.36e-114 354
MsG0380015739.01.T03 MTR_5g096820 48.993 298 128 9 70 350 348 638 4.68e-88 282
MsG0380015739.01.T03 MTR_3g077280 33.208 530 251 17 9 447 245 762 2.26e-73 246
MsG0380015739.01.T03 MTR_4g105250 31.599 538 266 14 9 456 238 763 2.90e-72 243
MsG0380015739.01.T03 MTR_6g004880 31.298 524 264 14 9 447 251 763 2.90e-68 233
MsG0380015739.01.T03 MTR_1g097450 33.810 420 232 13 70 458 434 838 4.99e-64 222
MsG0380015739.01.T03 MTR_7g106910 33.894 416 237 12 70 458 439 843 5.45e-63 219
MsG0380015739.01.T03 MTR_8g088020 33.816 414 229 12 70 458 430 823 1.79e-59 209
MsG0380015739.01.T03 MTR_7g109790 31.765 340 202 10 134 453 9 338 2.06e-43 156
MsG0380015739.01.T03 MTR_5g065520 35.622 233 95 9 243 458 213 407 1.05e-24 106
MsG0380015739.01.T02 MTR_3g075510 92.188 64 5 0 58 121 150 213 5.65e-35 127
MsG0380015739.01.T02 MTR_3g075510 82.979 47 7 1 1 46 1 47 1.97e-16 74.3
MsG0380015739.01.T02 MTR_3g075510 92.188 64 5 0 58 121 150 213 6.99e-35 127
MsG0380015739.01.T02 MTR_3g075510 82.979 47 7 1 1 46 1 47 2.00e-16 74.3
MsG0380015739.01.T02 MTR_7g091880 50.000 60 30 0 58 117 144 203 1.15e-14 69.3
MsG0380015739.01.T02 MTR_1g052515 48.333 60 31 0 58 117 140 199 2.04e-14 68.6
MsG0380015739.01.T02 MTR_5g096820 41.667 60 35 0 58 117 152 211 1.88e-11 60.1
MsG0380015739.01.T02 MTR_5g096820 47.826 46 24 0 72 117 166 211 6.70e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015739.01.T01 AT3G57520 53.333 60 28 0 58 117 145 204 1.99e-16 74.3
MsG0380015739.01.T01 AT3G57520 51.562 64 31 0 58 121 145 208 5.39e-16 73.2
MsG0380015739.01.T01 AT3G57520 51.562 64 31 0 58 121 145 208 6.50e-16 72.8
MsG0380015739.01.T01 AT5G40390 43.939 66 37 0 58 123 169 234 5.14e-12 62.0
MsG0380015739.01.T01 AT1G55740 43.333 60 34 0 58 117 145 204 5.83e-11 58.9
MsG0380015739.01.T03 AT3G57520 43.956 546 201 13 9 458 221 757 5.10e-146 436
MsG0380015739.01.T03 AT3G57520 45.372 443 159 11 9 377 221 654 1.27e-121 369
MsG0380015739.01.T03 AT5G20250 42.582 519 218 15 9 459 227 733 3.17e-115 355
MsG0380015739.01.T03 AT5G20250 42.582 519 218 15 9 459 227 733 3.17e-115 355
MsG0380015739.01.T03 AT5G20250 42.582 519 218 15 9 459 227 733 3.17e-115 355
MsG0380015739.01.T03 AT1G55740 43.264 527 214 16 9 458 221 739 2.14e-114 353
MsG0380015739.01.T03 AT5G20250 42.582 519 218 15 9 459 322 828 3.79e-114 355
MsG0380015739.01.T03 AT3G57520 50.448 335 103 6 9 286 221 549 9.98e-103 318
MsG0380015739.01.T03 AT5G40390 34.895 427 221 13 75 465 370 775 2.44e-66 227
MsG0380015739.01.T03 AT4G01970 32.715 431 250 14 58 456 436 858 1.40e-62 218
MsG0380015739.01.T03 AT4G01970 32.715 431 250 14 58 456 483 905 2.96e-62 218
MsG0380015739.01.T02 AT3G57520 53.333 60 28 0 58 117 145 204 1.99e-16 74.3
MsG0380015739.01.T02 AT3G57520 51.562 64 31 0 58 121 145 208 5.39e-16 73.2
MsG0380015739.01.T02 AT3G57520 51.562 64 31 0 58 121 145 208 6.50e-16 72.8
MsG0380015739.01.T02 AT5G40390 43.939 66 37 0 58 123 169 234 5.14e-12 62.0
MsG0380015739.01.T02 AT1G55740 43.333 60 34 0 58 117 145 204 5.83e-11 58.9

Find 93 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCGAGATTGTTTGTTTC+AGG 0.138623 3:-74480256 MsG0380015739.01.T01:three_prime_UTR
CTAATGTTTCTATCAAATTT+TGG 0.150455 3:+74481007 None:intergenic
CCGACACACTTAACCATTTC+AGG 0.207056 3:-74480019 MsG0380015739.01.T01:three_prime_UTR
AAGAAGGTTGGTTAATTTAT+AGG 0.228856 3:+74483010 None:intergenic
AATGAAGTTGAGAATGTTAA+AGG 0.234661 3:+74482926 None:intergenic
AGAAGGTTGGTTAATTTATA+GGG 0.248956 3:+74483011 None:intergenic
ACAACTCTGATTCAATTTAC+AGG 0.265456 3:-74480877 MsG0380015739.01.T01:intron
AAGAGGTTGCTGGTGAAAAT+TGG 0.280176 3:-74479964 MsG0380015739.01.T01:three_prime_UTR
GTCTACAAACATGACTATTT+CGG 0.314200 3:-74482860 MsG0380015739.01.T01:exon
TACTGGGTTCCTTCAATTAT+CGG 0.317199 3:+74481579 None:intergenic
AGGCACTCGTCCTTCACTTT+AGG 0.317254 3:+74482832 None:intergenic
AACAAGGCTGATAGACATTA+AGG 0.327395 3:-74481473 MsG0380015739.01.T01:three_prime_UTR
CAAAATTTGATAGAAACATT+AGG 0.332651 3:-74481006 MsG0380015739.01.T01:three_prime_UTR
TGAGGGACATTGTGAGAATC+AGG 0.343631 3:+74482794 None:intergenic
TTGATAGAAACATTAGGTTC+AGG 0.347566 3:-74481000 MsG0380015739.01.T01:three_prime_UTR
GTGGTTTCCGATGGTTTCAT+TGG 0.349098 3:+74480043 None:intergenic
AACATTCAAACCTGCATTGA+AGG 0.378084 3:+74479919 None:intergenic
GTTGTTTCACCTGTTTCAGC+TGG 0.380450 3:-74482766 MsG0380015739.01.T01:CDS
TTGGCCAGCTTCCTGCTCCT+TGG 0.418002 3:+74480062 None:intergenic
AATAAGCTGACTGGGGTCAT+AGG 0.419910 3:-74480096 MsG0380015739.01.T01:three_prime_UTR
TGTCCATGGCTATATCTCTA+AGG 0.420570 3:+74481142 None:intergenic
AGATATAGCCATGGACAGCC+TGG 0.423263 3:-74481136 MsG0380015739.01.T01:three_prime_UTR
AAGTTTATCATCGTTGATGA+TGG 0.424891 3:-74481642 MsG0380015739.01.T01:three_prime_UTR
AGTGAAGGACGAGTGCCTTA+TGG 0.427110 3:-74482827 MsG0380015739.01.T01:CDS
AAAGCAGACCCAGCTGAAAC+AGG 0.434640 3:+74482757 None:intergenic
GAGTTTCTTGAAGAGGTTGC+TGG 0.444364 3:-74479974 MsG0380015739.01.T01:three_prime_UTR
TGATAGAAACATTAGGTTCA+GGG 0.448878 3:-74480999 MsG0380015739.01.T01:three_prime_UTR
AATTTGAGGTGGGTGGAAGA+AGG 0.451906 3:+74482994 None:intergenic
TGAGGTGGGTGGAAGAAGGT+TGG 0.460780 3:+74482998 None:intergenic
CTTGCTAGCTGTGGCGTCGA+TGG 0.462315 3:-74481045 MsG0380015739.01.T01:three_prime_UTR
TGCAAGTAGTGACAAACAAC+TGG 0.473418 3:+74483126 None:intergenic
TTGTATCGTATGGAGGAAAC+AGG 0.473708 3:+74483160 None:intergenic
ATTGCCAAGGAGCAGGAAGC+TGG 0.488091 3:-74480066 MsG0380015739.01.T01:three_prime_UTR
ATACTATATGCCTTCAATGC+AGG 0.489268 3:-74479929 MsG0380015739.01.T01:intron
TCAGGTTGCCCCTCACCATA+AGG 0.490694 3:+74482812 None:intergenic
CTTGCTCTCAAGACTGATCC+AGG 0.491258 3:+74480294 None:intergenic
AATTCAGTCAGTGGTTCCAC+AGG 0.492327 3:-74481168 MsG0380015739.01.T01:three_prime_UTR
TTGTTTCACCTGTTTCAGCT+GGG 0.494175 3:-74482765 MsG0380015739.01.T01:CDS
GTCTTGAGAGCAAGATATGC+TGG 0.497867 3:-74480285 MsG0380015739.01.T01:three_prime_UTR
TCTTCACCCTCGGCACTCTC+CGG 0.499147 3:-74482697 MsG0380015739.01.T01:intron
CGTCTTAATTGCCAAGGAGC+AGG 0.499666 3:-74480073 MsG0380015739.01.T01:three_prime_UTR
TCCCGTCATGTCTTCACCCT+CGG 0.502127 3:-74482707 MsG0380015739.01.T01:CDS
TTTGTTTCAGGATCCAGTAA+TGG 0.516931 3:-74480244 MsG0380015739.01.T01:three_prime_UTR
TCATCAACGATGATAAACTT+TGG 0.518122 3:+74481645 None:intergenic
GACATGACGGGAACTAGAAT+AGG 0.520217 3:+74482718 None:intergenic
GGAACTTGAATAAGCTGACT+GGG 0.528230 3:-74480104 MsG0380015739.01.T01:three_prime_UTR
GAAGGCGAACCGATAATTGA+AGG 0.534207 3:-74481588 MsG0380015739.01.T01:three_prime_UTR
GATGGTTGTATTGTATCGTA+TGG 0.540127 3:+74483150 None:intergenic
TGGAACTTGAATAAGCTGAC+TGG 0.542627 3:-74480105 MsG0380015739.01.T01:three_prime_UTR
TTATCATCGTTGATGATGGA+TGG 0.546645 3:-74481638 MsG0380015739.01.T01:three_prime_UTR
CACAGTTATCTTGCTAGCTG+TGG 0.548683 3:-74481054 MsG0380015739.01.T01:three_prime_UTR
TCAAGAAACTCAACATCAAG+TGG 0.552805 3:+74479986 None:intergenic
CTAGAACTAGAACTAGAACT+AGG 0.556568 3:+74483210 None:intergenic
ATGATGAATTGTATAATTTG+AGG 0.556594 3:+74482980 None:intergenic
AATTTGAAGTTCAGAAGTGA+TGG 0.558269 3:-74481448 MsG0380015739.01.T01:three_prime_UTR
TTTCAGGATCCAGTAATGGA+TGG 0.559262 3:-74480240 MsG0380015739.01.T01:three_prime_UTR
GGACGAGTGCCTTATGGTGA+GGG 0.560118 3:-74482821 MsG0380015739.01.T01:CDS
ATGCATTACAGTGATAAGCC+TGG 0.563441 3:-74480354 MsG0380015739.01.T01:intron
CCTGAAATGGTTAAGTGTGT+CGG 0.565716 3:+74480019 None:intergenic
TTCGGTTGTACCTAAAGTGA+AGG 0.566143 3:-74482842 MsG0380015739.01.T01:CDS
TGTGTCGGTGTGGTTTCCGA+TGG 0.566607 3:+74480034 None:intergenic
TGATGTTGAGTTTCTTGAAG+AGG 0.567441 3:-74479981 MsG0380015739.01.T01:three_prime_UTR
ACTAGAACTAGAACTAGGAT+AGG 0.571255 3:+74483215 None:intergenic
TGCCGAGGGTGAAGACATGA+CGG 0.575394 3:+74482705 None:intergenic
AGGTTGGTTAATTTATAGGG+AGG 0.575908 3:+74483014 None:intergenic
ATGAATTGTATAATTTGAGG+TGG 0.584893 3:+74482983 None:intergenic
TTGAAGAAGCTAGTACTACC+TGG 0.585052 3:-74480312 MsG0380015739.01.T01:three_prime_UTR
AGACTCACCGGAGAGTGCCG+AGG 0.592542 3:+74482690 None:intergenic
GACTCACCGGAGAGTGCCGA+GGG 0.594133 3:+74482691 None:intergenic
ATTGTATAATTTGAGGTGGG+TGG 0.603473 3:+74482987 None:intergenic
TTAAACAGTCTCTCAAGTGG+AGG 0.605758 3:-74481675 MsG0380015739.01.T01:intron
GAAACATTAGGTTCAGGGTG+CGG 0.606140 3:-74480994 MsG0380015739.01.T01:three_prime_UTR
ACATTAGGTTCAGGGTGCGG+TGG 0.606763 3:-74480991 MsG0380015739.01.T01:three_prime_UTR
AAATTAAACAGTCTCTCAAG+TGG 0.607370 3:-74481678 MsG0380015739.01.T01:intron
AGGACGAGTGCCTTATGGTG+AGG 0.621258 3:-74482822 MsG0380015739.01.T01:CDS
AATATGTTAGGTTTGCAACA+AGG 0.621827 3:-74481489 MsG0380015739.01.T01:intron
CATAGGCGTCTTAATTGCCA+AGG 0.622659 3:-74480079 MsG0380015739.01.T01:three_prime_UTR
GTTGCTGGTGAAAATTGGAA+TGG 0.626737 3:-74479959 MsG0380015739.01.T01:three_prime_UTR
GCCGAGGGTGAAGACATGAC+GGG 0.627661 3:+74482706 None:intergenic
CATTAGAGACATCAATAGCA+AGG 0.628449 3:-74480936 MsG0380015739.01.T01:three_prime_UTR
TGAATTGTATAATTTGAGGT+GGG 0.632108 3:+74482984 None:intergenic
ACAAACAATCTCGAGTAGGA+CGG 0.638323 3:+74480262 None:intergenic
GGTTGTATTGTATCGTATGG+AGG 0.647377 3:+74483153 None:intergenic
TGAAACAAACAATCTCGAGT+AGG 0.658675 3:+74480258 None:intergenic
ATTCAGTCAGTGGTTCCACA+GGG 0.659787 3:-74481167 MsG0380015739.01.T01:three_prime_UTR
AAGCTGGCCAATGAAACCAT+CGG 0.665066 3:-74480050 MsG0380015739.01.T01:three_prime_UTR
GACGAGTGCCTTATGGTGAG+GGG 0.667610 3:-74482820 MsG0380015739.01.T01:CDS
TAGTGACAAACAACTGGTGA+TGG 0.670696 3:+74483132 None:intergenic
TTGTGAGACATGCAACAATG+AGG 0.674845 3:+74480896 None:intergenic
GAACCTTAGAGATATAGCCA+TGG 0.685161 3:-74481145 MsG0380015739.01.T01:three_prime_UTR
AATGGTTAAGTGTGTCGGTG+TGG 0.693578 3:+74480024 None:intergenic
GAACTTGAATAAGCTGACTG+GGG 0.696242 3:-74480103 MsG0380015739.01.T01:three_prime_UTR
TATATCTCTAAGGTTCCCTG+TGG 0.766010 3:+74481152 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGCACTTAAATATATAA+AGG - Chr3:74482493-74482512 MsG0380015739.01.T01:intron 15.0%
!! CTTCAATTAATACAATTAAA+AGG + Chr3:74481804-74481823 None:intergenic 15.0%
!! TAAGCACTTAAATATATAAA+GGG - Chr3:74482494-74482513 MsG0380015739.01.T01:intron 15.0%
!!! ATCACTTAATAAAACTTTTA+AGG - Chr3:74482341-74482360 MsG0380015739.01.T01:intron 15.0%
!!! TAAAAGTCATAAAATTTTGA+TGG + Chr3:74481119-74481138 None:intergenic 15.0%
!!! TTTTATAACATTATTAGACT+TGG + Chr3:74482736-74482755 None:intergenic 15.0%
!! AGGTTTGAATGTTAAATTTA+GGG - Chr3:74482294-74482313 MsG0380015739.01.T01:intron 20.0%
!! ATGATGAATTGTATAATTTG+AGG + Chr3:74479226-74479245 None:intergenic 20.0%
!! ATGTTAACATATGTATAAAC+AGG - Chr3:74482755-74482774 MsG0380015739.01.T01:CDS 20.0%
!! CAAAATTTGATAGAAACATT+AGG - Chr3:74481197-74481216 MsG0380015739.01.T01:three_prime_UTR 20.0%
!! CTCATTGAATTAATATACTA+AGG + Chr3:74479657-74479676 None:intergenic 20.0%
!! CTTAACAAATTAAAAAACGT+TGG - Chr3:74479135-74479154 MsG0380015739.01.T01:three_prime_UTR 20.0%
!! TGTGTATTAAAAAATATGCA+GGG - Chr3:74479700-74479719 MsG0380015739.01.T01:intron 20.0%
!! TTCATTATTAGCTAACTTAT+CGG + Chr3:74479599-74479618 None:intergenic 20.0%
!! TTGTGTATTAAAAAATATGC+AGG - Chr3:74479699-74479718 MsG0380015739.01.T01:intron 20.0%
!!! AATTTTTCATTGTACCAAAA+AGG - Chr3:74483147-74483166 MsG0380015739.01.T01:five_prime_UTR 20.0%
!!! ATACAATTAAAAGGTTTTTG+CGG + Chr3:74481795-74481814 None:intergenic 20.0%
!!! ATTTTTATTCCTAATGACAT+AGG - Chr3:74480261-74480280 MsG0380015739.01.T01:three_prime_UTR 20.0%
!!! CACATCTTTTATAATATGTT+AGG - Chr3:74480702-74480721 MsG0380015739.01.T01:three_prime_UTR 20.0%
!!! CTAATGTTTCTATCAAATTT+TGG + Chr3:74481199-74481218 None:intergenic 20.0%
!!! TACAATGAATTTTTCAAAGA+AGG - Chr3:74480597-74480616 MsG0380015739.01.T01:intron 20.0%
!!! TCTTTATTTAGAGTCAAATA+TGG - Chr3:74479738-74479757 MsG0380015739.01.T01:intron 20.0%
! AAAAGGATGATTCATCAAAA+AGG + Chr3:74481404-74481423 None:intergenic 25.0%
! AACAATTGAGAGTAATGAAA+AGG + Chr3:74481421-74481440 None:intergenic 25.0%
! AATGAAGTTGAGAATGTTAA+AGG + Chr3:74479280-74479299 None:intergenic 25.0%
! AATGAGACAAGAATATTACT+TGG + Chr3:74481584-74481603 None:intergenic 25.0%
! ATAAGCTGAAAACAACTTAT+AGG + Chr3:74482404-74482423 None:intergenic 25.0%
! ATGAATTGTATAATTTGAGG+TGG + Chr3:74479223-74479242 None:intergenic 25.0%
! CACAATGTTTATTAGAGTTT+AGG - Chr3:74480223-74480242 MsG0380015739.01.T01:intron 25.0%
! CAGGTTTGAATGTTAAATTT+AGG - Chr3:74482293-74482312 MsG0380015739.01.T01:intron 25.0%
! CATATGTATAAACAGGTATT+TGG - Chr3:74482762-74482781 MsG0380015739.01.T01:CDS 25.0%
! GTGTATTAAAAAATATGCAG+GGG - Chr3:74479701-74479720 MsG0380015739.01.T01:intron 25.0%
! TCTTAAGTTAATGAGAATCA+TGG + Chr3:74480888-74480907 None:intergenic 25.0%
! TGTAACTATTTGTCTCTAAA+TGG - Chr3:74482003-74482022 MsG0380015739.01.T01:intron 25.0%
! TGTATTAAAAAATATGCAGG+GGG - Chr3:74479702-74479721 MsG0380015739.01.T01:intron 25.0%
! TTGATAGAGTCAATAAATCA+TGG + Chr3:74480805-74480824 None:intergenic 25.0%
! TTTCTGTCATCTTGAAAATA+AGG - Chr3:74480307-74480326 MsG0380015739.01.T01:three_prime_UTR 25.0%
!! AAGAAGGTTGGTTAATTTAT+AGG + Chr3:74479196-74479215 None:intergenic 25.0%
!! AGAAGGTTGGTTAATTTATA+GGG + Chr3:74479195-74479214 None:intergenic 25.0%
!! ATCAAAGTTTTCAAATTTGC+AGG + Chr3:74480486-74480505 None:intergenic 25.0%
!! GAACAAATTCTTTACCTTTT+TGG + Chr3:74483164-74483183 None:intergenic 25.0%
!! TACAATTAAAAGGTTTTTGC+GGG + Chr3:74481794-74481813 None:intergenic 25.0%
!! TGAATTGTATAATTTGAGGT+GGG + Chr3:74479222-74479241 None:intergenic 25.0%
!! TTATTTAGAGTCAAATATGG+TGG - Chr3:74479741-74479760 MsG0380015739.01.T01:intron 25.0%
!!! ATTTTAAAATCATGATTGCC+AGG + Chr3:74481870-74481889 None:intergenic 25.0%
!!! CTTATTTTCTTAAGCTTTTC+AGG - Chr3:74482419-74482438 MsG0380015739.01.T01:intron 25.0%
!!! CTTTGATTTTTGAATGCTTT+AGG - Chr3:74480074-74480093 MsG0380015739.01.T01:three_prime_UTR 25.0%
AAATCCACAAGGAATAAAAG+AGG - Chr3:74480390-74480409 MsG0380015739.01.T01:intron 30.0%
AAATTAAACAGTCTCTCAAG+TGG - Chr3:74480525-74480544 MsG0380015739.01.T01:intron 30.0%
AAGTTAATGAGAATCATGGA+CGG + Chr3:74480884-74480903 None:intergenic 30.0%
AATATGTTAGGTTTGCAACA+AGG - Chr3:74480714-74480733 MsG0380015739.01.T01:three_prime_UTR 30.0%
AATCCACAAGGAATAAAAGA+GGG - Chr3:74480391-74480410 MsG0380015739.01.T01:intron 30.0%
AATTGAAATGAGAGACTTAC+TGG + Chr3:74480644-74480663 None:intergenic 30.0%
AATTTACAAATACTGCCTCA+TGG + Chr3:74480127-74480146 None:intergenic 30.0%
ACAACTCTGATTCAATTTAC+AGG - Chr3:74481326-74481345 MsG0380015739.01.T01:intron 30.0%
AGGCAGTATTTGTAAATTCA+GGG - Chr3:74480129-74480148 MsG0380015739.01.T01:intron 30.0%
ATAGGCTTCTTATTGAGATA+AGG + Chr3:74480854-74480873 None:intergenic 30.0%
ATATACAGTATCTCCAATCA+GGG - Chr3:74482652-74482671 MsG0380015739.01.T01:intron 30.0%
ATTGAAATGAGAGACTTACT+GGG + Chr3:74480643-74480662 None:intergenic 30.0%
ATTTACAAATACTGCCTCAT+GGG + Chr3:74480126-74480145 None:intergenic 30.0%
GATCAAGAATCTATCAGATT+TGG + Chr3:74481761-74481780 None:intergenic 30.0%
GTCTACAAACATGACTATTT+CGG - Chr3:74479343-74479362 MsG0380015739.01.T01:three_prime_UTR 30.0%
TAAACATTGTGTAGAGAGTA+TGG + Chr3:74480214-74480233 None:intergenic 30.0%
TACACTAAAGTAAATCCACA+AGG - Chr3:74480379-74480398 MsG0380015739.01.T01:intron 30.0%
TATATACAGTATCTCCAATC+AGG - Chr3:74482651-74482670 MsG0380015739.01.T01:intron 30.0%
TCATCAACGATGATAAACTT+TGG + Chr3:74480561-74480580 None:intergenic 30.0%
TGAATTGGATATACAAGCTT+CGG + Chr3:74481021-74481040 None:intergenic 30.0%
TGATAGAAACATTAGGTTCA+GGG - Chr3:74481204-74481223 MsG0380015739.01.T01:three_prime_UTR 30.0%
TGCACAATAGTAAACATCAA+AGG - Chr3:74482879-74482898 MsG0380015739.01.T01:five_prime_UTR 30.0%
TGCTATATCTGCTATAAGAA+AGG + Chr3:74479547-74479566 None:intergenic 30.0%
TTACTGACCATTAAACTTGA+TGG - Chr3:74483002-74483021 MsG0380015739.01.T01:five_prime_UTR 30.0%
TTCCTAATGACATAGGATAT+TGG - Chr3:74480268-74480287 MsG0380015739.01.T01:three_prime_UTR 30.0%
TTGATAGAAACATTAGGTTC+AGG - Chr3:74481203-74481222 MsG0380015739.01.T01:three_prime_UTR 30.0%
TTTACAGTCTGCTGAAAATT+TGG - Chr3:74482078-74482097 MsG0380015739.01.T01:CDS 30.0%
! AAGTTTATCATCGTTGATGA+TGG - Chr3:74480561-74480580 MsG0380015739.01.T01:intron 30.0%
! AATGTTAAATTTAGGGCATG+TGG - Chr3:74482301-74482320 MsG0380015739.01.T01:intron 30.0%
! AATTTGAAGTTCAGAAGTGA+TGG - Chr3:74480755-74480774 MsG0380015739.01.T01:three_prime_UTR 30.0%
! ACATGTAAGGTTTGAAATGT+TGG + Chr3:74481498-74481517 None:intergenic 30.0%
! ACTTCTAATTTTCCTCTACT+AGG + Chr3:74482605-74482624 None:intergenic 30.0%
! GAATCTTTGATTAGCTCAAA+TGG + Chr3:74480161-74480180 None:intergenic 30.0%
! TACAAACTGTACAATTTTGC+AGG - Chr3:74482563-74482582 MsG0380015739.01.T01:intron 30.0%
! TTCTTTTGTATGCTTACGAT+AGG + Chr3:74483129-74483148 None:intergenic 30.0%
! TTTTCATTGCGTTTGAAGAT+GGG + Chr3:74480990-74481009 None:intergenic 30.0%
! TTTTTCATTGCGTTTGAAGA+TGG + Chr3:74480991-74481010 None:intergenic 30.0%
!! AGGAAAATTAGAAGTATCCT+TGG - Chr3:74482610-74482629 MsG0380015739.01.T01:intron 30.0%
!! TACATCTTGATTTGTTTGGA+TGG - Chr3:74480339-74480358 MsG0380015739.01.T01:three_prime_UTR 30.0%
AAAAATATGCAGGGGGATAT+AGG - Chr3:74479709-74479728 MsG0380015739.01.T01:intron 35.0%
AACAAGGCTGATAGACATTA+AGG - Chr3:74480730-74480749 MsG0380015739.01.T01:three_prime_UTR 35.0%
AACATTCAAACCTGCATTGA+AGG + Chr3:74482287-74482306 None:intergenic 35.0%
AATTTGCAGGCTTATCACAT+AGG + Chr3:74480473-74480492 None:intergenic 35.0%
ACTAGAACTAGAACTAGGAT+AGG + Chr3:74478991-74479010 None:intergenic 35.0%
AGAAGAATTGTCCTGCATAA+GGG - Chr3:74482845-74482864 MsG0380015739.01.T01:CDS 35.0%
AGAAGCAATTGAGTTTCCAT+TGG + Chr3:74479803-74479822 None:intergenic 35.0%
AGGATATTGGAGAAACACAA+AGG - Chr3:74480281-74480300 MsG0380015739.01.T01:three_prime_UTR 35.0%
ATACTATATGCCTTCAATGC+AGG - Chr3:74482274-74482293 MsG0380015739.01.T01:intron 35.0%
ATAGTAAACATCAAAGGCAG+AGG - Chr3:74482885-74482904 MsG0380015739.01.T01:five_prime_UTR 35.0%
ATCTGCTATAAGAAAGGAGA+AGG + Chr3:74479541-74479560 None:intergenic 35.0%
CATTAGAGACATCAATAGCA+AGG - Chr3:74481267-74481286 MsG0380015739.01.T01:three_prime_UTR 35.0%
CCAAACAAATCAAGATGTAC+AGG + Chr3:74480338-74480357 None:intergenic 35.0%
CTAGAACTAGAACTAGAACT+AGG + Chr3:74478996-74479015 None:intergenic 35.0%
CTCCAATATCCTATGTCATT+AGG + Chr3:74480273-74480292 None:intergenic 35.0%
GAGGCAGTATTTGTAAATTC+AGG - Chr3:74480128-74480147 MsG0380015739.01.T01:intron 35.0%
GATATAGCAGATAGAGCTAT+TGG - Chr3:74479558-74479577 MsG0380015739.01.T01:three_prime_UTR 35.0%
GATGGTTGTATTGTATCGTA+TGG + Chr3:74479056-74479075 None:intergenic 35.0%
GCATGAGAACTAAGAAATGA+AGG + Chr3:74480681-74480700 None:intergenic 35.0%
GGACATAGAATTGTATTCTG+AGG - Chr3:74483039-74483058 MsG0380015739.01.T01:five_prime_UTR 35.0%
GGATTGTGAAGTTTGAACAT+AGG + Chr3:74480105-74480124 None:intergenic 35.0%
GGCAGTATTTGTAAATTCAG+GGG - Chr3:74480130-74480149 MsG0380015739.01.T01:intron 35.0%
TAATCCATCTTCAGAGTTGT+AGG + Chr3:74482985-74483004 None:intergenic 35.0%
TACATGTCAAGCAATCCAAT+TGG + Chr3:74482807-74482826 None:intergenic 35.0%
TACTCGAGATTGTTTGTTTC+AGG - Chr3:74481947-74481966 MsG0380015739.01.T01:intron 35.0%
TACTGGGTTCCTTCAATTAT+CGG + Chr3:74480627-74480646 None:intergenic 35.0%
TAGAAGAATTGTCCTGCATA+AGG - Chr3:74482844-74482863 MsG0380015739.01.T01:CDS 35.0%
TATGACACGTCTCATTCTAA+AGG - Chr3:74483234-74483253 MsG0380015739.01.T02:five_prime_UTR 35.0%
TCAAGAAACTCAACATCAAG+TGG + Chr3:74482220-74482239 None:intergenic 35.0%
TGAAACAAACAATCTCGAGT+AGG + Chr3:74481948-74481967 None:intergenic 35.0%
TGAACAAGCATACTCATTGT+CGG + Chr3:74480912-74480931 None:intergenic 35.0%
TGATGTTGAGTTTCTTGAAG+AGG - Chr3:74482222-74482241 MsG0380015739.01.T01:intron 35.0%
TGTATATCCAATTCAGTCAG+TGG - Chr3:74481026-74481045 MsG0380015739.01.T01:three_prime_UTR 35.0%
TTGCTTGACATGTACAATTC+AGG - Chr3:74482813-74482832 MsG0380015739.01.T01:CDS 35.0%
TTGTACAGTTTGTAAGCATG+TGG + Chr3:74482557-74482576 None:intergenic 35.0%
TTTGTTTCAGGATCCAGTAA+TGG - Chr3:74481959-74481978 MsG0380015739.01.T01:intron 35.0%
! AGCTTTTAACAGTCTTCTTC+TGG - Chr3:74481527-74481546 MsG0380015739.01.T01:intron 35.0%
! AGGTTGGTTAATTTATAGGG+AGG + Chr3:74479192-74479211 None:intergenic 35.0%
! ATTGTATAATTTGAGGTGGG+TGG + Chr3:74479219-74479238 None:intergenic 35.0%
! GCTTTTAACAGTCTTCTTCT+GGG - Chr3:74481528-74481547 MsG0380015739.01.T01:intron 35.0%
! TACCTTTTACCATCCATTAC+TGG + Chr3:74481975-74481994 None:intergenic 35.0%
! TCTGAAAATGTTGATGAGTC+TGG - Chr3:74481623-74481642 MsG0380015739.01.T01:three_prime_UTR 35.0%
! TGGTCTAACTTTTCCTGAAA+TGG + Chr3:74482200-74482219 None:intergenic 35.0%
!! ACCATTAAACTTGATGGTGA+AGG - Chr3:74483008-74483027 MsG0380015739.01.T01:five_prime_UTR 35.0%
!! AGGTGAAACAACTGTTTTGA+GGG + Chr3:74479429-74479448 None:intergenic 35.0%
!! ATCCAGTAATGGATGGTAAA+AGG - Chr3:74481970-74481989 MsG0380015739.01.T01:intron 35.0%
!! CCTGTACATCTTGATTTGTT+TGG - Chr3:74480335-74480354 MsG0380015739.01.T01:three_prime_UTR 35.0%
!! GAATAAAAGAGGGCATTCAA+AGG - Chr3:74480401-74480420 MsG0380015739.01.T01:intron 35.0%
!! GCTTTGACTCGAAATTTTGT+TGG + Chr3:74479107-74479126 None:intergenic 35.0%
!! TTATCATCGTTGATGATGGA+TGG - Chr3:74480565-74480584 MsG0380015739.01.T01:intron 35.0%
!! TTTTCCTACAACTCTGAAGA+TGG - Chr3:74482978-74482997 MsG0380015739.01.T01:five_prime_UTR 35.0%
AACAGGCAAGAAGAGAATGT+AGG + Chr3:74479905-74479924 None:intergenic 40.0%
AAGAGGTTGCTGGTGAAAAT+TGG - Chr3:74482239-74482258 MsG0380015739.01.T01:intron 40.0%
ACAAACAATCTCGAGTAGGA+CGG + Chr3:74481944-74481963 None:intergenic 40.0%
AGAGATATTTGTGCCAGACT+GGG - Chr3:74481551-74481570 MsG0380015739.01.T01:intron 40.0%
AGCCTGGAAAAATATGGAGT+GGG - Chr3:74481083-74481102 MsG0380015739.01.T01:three_prime_UTR 40.0%
ATCATGGACGGAAGTTCAAT+AGG + Chr3:74480872-74480891 None:intergenic 40.0%
ATCTGAGGATTTCATGCCAA+GGG - Chr3:74481470-74481489 MsG0380015739.01.T01:three_prime_UTR 40.0%
ATGCATTACAGTGATAAGCC+TGG - Chr3:74481849-74481868 MsG0380015739.01.T01:CDS 40.0%
ATGGACAGCCTGGAAAAATA+TGG - Chr3:74481077-74481096 MsG0380015739.01.T01:three_prime_UTR 40.0%
ATTTGTTTGGATGGTGCACT+GGG - Chr3:74480348-74480367 MsG0380015739.01.T01:intron 40.0%
CATATGCAATTTGCGCCAAT+TGG - Chr3:74482789-74482808 MsG0380015739.01.T01:CDS 40.0%
CATGCTTTAGCTGGTTATTG+GGG - Chr3:74480955-74480974 MsG0380015739.01.T01:three_prime_UTR 40.0%
CCTGAAATGGTTAAGTGTGT+CGG + Chr3:74482187-74482206 None:intergenic 40.0%
CTTGACATGTACAATTCAGG+AGG - Chr3:74482816-74482835 MsG0380015739.01.T01:CDS 40.0%
GAACCTTAGAGATATAGCCA+TGG - Chr3:74481058-74481077 MsG0380015739.01.T01:three_prime_UTR 40.0%
GAACTTGAATAAGCTGACTG+GGG - Chr3:74482100-74482119 MsG0380015739.01.T01:CDS 40.0%
GAGATTGTTGCAAGAACTGT+TGG + Chr3:74480783-74480802 None:intergenic 40.0%
GCATGCTTTAGCTGGTTATT+GGG - Chr3:74480954-74480973 MsG0380015739.01.T01:three_prime_UTR 40.0%
GCCTTCACCATCAAGTTTAA+TGG + Chr3:74483012-74483031 None:intergenic 40.0%
GGAAACTCAATTGCTTCTAG+TGG - Chr3:74479805-74479824 MsG0380015739.01.T01:intron 40.0%
GGAACTTGAATAAGCTGACT+GGG - Chr3:74482099-74482118 MsG0380015739.01.T01:CDS 40.0%
GGTTGTATTGTATCGTATGG+AGG + Chr3:74479053-74479072 None:intergenic 40.0%
GTATGCTTACGATAGGAGTT+GGG + Chr3:74483122-74483141 None:intergenic 40.0%
GTGGTTGTGCAGTATATGTT+AGG - Chr3:74481728-74481747 MsG0380015739.01.T01:intron 40.0%
GTTGCTGGTGAAAATTGGAA+TGG - Chr3:74482244-74482263 MsG0380015739.01.T01:intron 40.0%
TAGTGACAAACAACTGGTGA+TGG + Chr3:74479074-74479093 None:intergenic 40.0%
TCAAACCTTACATGTTGCGT+CGG - Chr3:74481503-74481522 MsG0380015739.01.T01:intron 40.0%
TCAAACTTCACAATCCCATG+AGG - Chr3:74480109-74480128 MsG0380015739.01.T01:three_prime_UTR 40.0%
TGCAAGTAGTGACAAACAAC+TGG + Chr3:74479080-74479099 None:intergenic 40.0%
TGGAACTTGAATAAGCTGAC+TGG - Chr3:74482098-74482117 MsG0380015739.01.T01:CDS 40.0%
TGTATGCTTACGATAGGAGT+TGG + Chr3:74483123-74483142 None:intergenic 40.0%
TGTCCATGGCTATATCTCTA+AGG + Chr3:74481064-74481083 None:intergenic 40.0%
TGTTAGACCGAAAAGTTGCT+TGG - Chr3:74482935-74482954 MsG0380015739.01.T01:five_prime_UTR 40.0%
TTAAACAGTCTCTCAAGTGG+AGG - Chr3:74480528-74480547 MsG0380015739.01.T01:intron 40.0%
TTCACATTGAAGAGTCTCCA+AGG + Chr3:74482630-74482649 None:intergenic 40.0%
TTCGGTTGTACCTAAAGTGA+AGG - Chr3:74479361-74479380 MsG0380015739.01.T01:three_prime_UTR 40.0%
TTGAAGAAGCTAGTACTACC+TGG - Chr3:74481891-74481910 MsG0380015739.01.T01:CDS 40.0%
TTGTATCGTATGGAGGAAAC+AGG + Chr3:74479046-74479065 None:intergenic 40.0%
TTGTGAGACATGCAACAATG+AGG + Chr3:74481310-74481329 None:intergenic 40.0%
TTGTTTCACCTGTTTCAGCT+GGG - Chr3:74479438-74479457 MsG0380015739.01.T01:intron 40.0%
! AACAAGAATCGACTTTCGCT+TGG + Chr3:74483080-74483099 None:intergenic 40.0%
! AACTTATCGGCTATCAGCTA+CGG + Chr3:74479586-74479605 None:intergenic 40.0%
! ACAAGAATCGACTTTCGCTT+GGG + Chr3:74483079-74483098 None:intergenic 40.0%
! AGGCTGTTTGAGATAGCTTA+TGG - Chr3:74482361-74482380 MsG0380015739.01.T01:intron 40.0%
! ATATTTTTCCAGGCTGTCCA+TGG + Chr3:74481078-74481097 None:intergenic 40.0%
! ATGCCCTCTTTTATTCCTTG+TGG + Chr3:74480397-74480416 None:intergenic 40.0%
! ATGTCCACCAAGCAACTTTT+CGG + Chr3:74482945-74482964 None:intergenic 40.0%
! CAGGTGAAACAACTGTTTTG+AGG + Chr3:74479430-74479449 None:intergenic 40.0%
! CATTCTCTTCTTGCCTGTTT+TGG - Chr3:74479906-74479925 MsG0380015739.01.T01:intron 40.0%
! GCAACTTTTCGGTCTAACAT+TGG + Chr3:74482934-74482953 None:intergenic 40.0%
! TTCCCACTCCATATTTTTCC+AGG + Chr3:74481088-74481107 None:intergenic 40.0%
! TTTCAGGATCCAGTAATGGA+TGG - Chr3:74481963-74481982 MsG0380015739.01.T01:intron 40.0%
!! GTTTGAAATGTTGGTTCCCT+TGG + Chr3:74481489-74481508 None:intergenic 40.0%
!! TATATCTCTAAGGTTCCCTG+TGG + Chr3:74481054-74481073 None:intergenic 40.0%
!! TTGATGGTGAAGGCAACAAA+GGG - Chr3:74483018-74483037 MsG0380015739.01.T01:five_prime_UTR 40.0%
AACATCAAAGGCAGAGGATG+TGG - Chr3:74482891-74482910 MsG0380015739.01.T01:five_prime_UTR 45.0%
AAGCTGGCCAATGAAACCAT+CGG - Chr3:74482153-74482172 MsG0380015739.01.T01:intron 45.0%
AATAAGCTGACTGGGGTCAT+AGG - Chr3:74482107-74482126 MsG0380015739.01.T01:CDS 45.0%
AATTCAGTCAGTGGTTCCAC+AGG - Chr3:74481035-74481054 MsG0380015739.01.T01:three_prime_UTR 45.0%
ACAGTATCTCCAATCAGGGT+TGG - Chr3:74482656-74482675 MsG0380015739.01.T01:intron 45.0%
ATTCAGTCAGTGGTTCCACA+GGG - Chr3:74481036-74481055 MsG0380015739.01.T01:three_prime_UTR 45.0%
ATTTGCAGCATCCCTTATGC+AGG + Chr3:74482859-74482878 None:intergenic 45.0%
CACAGTTATCTTGCTAGCTG+TGG - Chr3:74481149-74481168 MsG0380015739.01.T01:three_prime_UTR 45.0%
CAGCCTGGAAAAATATGGAG+TGG - Chr3:74481082-74481101 MsG0380015739.01.T01:three_prime_UTR 45.0%
CATAGGCGTCTTAATTGCCA+AGG - Chr3:74482124-74482143 MsG0380015739.01.T01:intron 45.0%
CATCTGAGGATTTCATGCCA+AGG - Chr3:74481469-74481488 MsG0380015739.01.T01:three_prime_UTR 45.0%
CATTGGAGTACGCTCCAAAT+CGG + Chr3:74482917-74482936 None:intergenic 45.0%
CCAATTCTGCGTTGTGAAAG+TGG - Chr3:74479974-74479993 MsG0380015739.01.T01:three_prime_UTR 45.0%
CCACTTTCACAACGCAGAAT+TGG + Chr3:74479977-74479996 None:intergenic 45.0%
CCGACACACTTAACCATTTC+AGG - Chr3:74482184-74482203 MsG0380015739.01.T01:intron 45.0%
GAAACATTAGGTTCAGGGTG+CGG - Chr3:74481209-74481228 MsG0380015739.01.T01:three_prime_UTR 45.0%
GAAGGCGAACCGATAATTGA+AGG - Chr3:74480615-74480634 MsG0380015739.01.T01:intron 45.0%
GAATTGGAGCTCGTTTAACG+CGG + Chr3:74479961-74479980 None:intergenic 45.0%
GAGAGATATTTGTGCCAGAC+TGG - Chr3:74481550-74481569 MsG0380015739.01.T01:intron 45.0%
GAGTTTCTTGAAGAGGTTGC+TGG - Chr3:74482229-74482248 MsG0380015739.01.T01:intron 45.0%
GCCACATGTAAACGTATCTG+CGG + Chr3:74480936-74480955 None:intergenic 45.0%
GGCATGCTTTAGCTGGTTAT+TGG - Chr3:74480953-74480972 MsG0380015739.01.T01:three_prime_UTR 45.0%
GTCATAACACCAACCCTGAT+TGG + Chr3:74482668-74482687 None:intergenic 45.0%
GTCTTGAGAGCAAGATATGC+TGG - Chr3:74481918-74481937 MsG0380015739.01.T01:CDS 45.0%
GTGGTTTCCGATGGTTTCAT+TGG + Chr3:74482163-74482182 None:intergenic 45.0%
TACATGTGGCATGCTTTAGC+TGG - Chr3:74480946-74480965 MsG0380015739.01.T01:three_prime_UTR 45.0%
TAGACCGAAAAGTTGCTTGG+TGG - Chr3:74482938-74482957 MsG0380015739.01.T01:five_prime_UTR 45.0%
TCCGCAGATACGTTTACATG+TGG - Chr3:74480932-74480951 MsG0380015739.01.T01:three_prime_UTR 45.0%
TGAGGGACATTGTGAGAATC+AGG + Chr3:74479412-74479431 None:intergenic 45.0%
TTCCATTGGAACATCGCTTG+CGG + Chr3:74479789-74479808 None:intergenic 45.0%
TTTGTAGAGCAAGCACGAGA+CGG - Chr3:74481675-74481694 MsG0380015739.01.T01:intron 45.0%
! AATGGTTAAGTGTGTCGGTG+TGG + Chr3:74482182-74482201 None:intergenic 45.0%
! AATTTGAGGTGGGTGGAAGA+AGG + Chr3:74479212-74479231 None:intergenic 45.0%
! GACATGACGGGAACTAGAAT+AGG + Chr3:74479488-74479507 None:intergenic 45.0%
! GATTTGTTTGGATGGTGCAC+TGG - Chr3:74480347-74480366 MsG0380015739.01.T01:intron 45.0%
! GTTGTTTCACCTGTTTCAGC+TGG - Chr3:74479437-74479456 MsG0380015739.01.T01:intron 45.0%
! TGTGGAACCACTGACTGAAT+TGG + Chr3:74481036-74481055 None:intergenic 45.0%
! TTTTCCTCTACTAGGCAGCT+TGG + Chr3:74482597-74482616 None:intergenic 45.0%
!! CTCTTCTTGCCTGTTTTGGA+TGG - Chr3:74479910-74479929 MsG0380015739.01.T01:intron 45.0%
!! CTTGATGGTGAAGGCAACAA+AGG - Chr3:74483017-74483036 MsG0380015739.01.T01:five_prime_UTR 45.0%
!!! TCAGCTGGGTCTGCTTTTTT+AGG - Chr3:74479452-74479471 MsG0380015739.01.T01:intron 45.0%
AAAGCAGACCCAGCTGAAAC+AGG + Chr3:74479449-74479468 None:intergenic 50.0%
AAGGAGAAGGAGAGACTCAC+CGG + Chr3:74479528-74479547 None:intergenic 50.0%
ACTTGGAACATGTCCCAGTC+TGG + Chr3:74481567-74481586 None:intergenic 50.0%
AGATATAGCCATGGACAGCC+TGG - Chr3:74481067-74481086 MsG0380015739.01.T01:three_prime_UTR 50.0%
AGCTACCGACGCAACATGTA+AGG + Chr3:74481511-74481530 None:intergenic 50.0%
AGGCACTCGTCCTTCACTTT+AGG + Chr3:74479374-74479393 None:intergenic 50.0%
AGTGAAGGACGAGTGCCTTA+TGG - Chr3:74479376-74479395 MsG0380015739.01.T01:three_prime_UTR 50.0%
ATCCGCAAGCGATGTTCCAA+TGG - Chr3:74479784-74479803 MsG0380015739.01.T01:intron 50.0%
CATGCAGCAGCAAGAGCAAT+AGG - Chr3:74481706-74481725 MsG0380015739.01.T01:intron 50.0%
CGAAAGGCTCCATCCAAAAC+AGG + Chr3:74479922-74479941 None:intergenic 50.0%
CGTCTTAATTGCCAAGGAGC+AGG - Chr3:74482130-74482149 MsG0380015739.01.T01:intron 50.0%
CTATTGCTCTTGCTGCTGCA+TGG + Chr3:74481708-74481727 None:intergenic 50.0%
CTTGCTCTCAAGACTGATCC+AGG + Chr3:74481912-74481931 None:intergenic 50.0%
CTTTCCAAGCTGCCTAGTAG+AGG - Chr3:74482590-74482609 MsG0380015739.01.T01:intron 50.0%
GCTTTAGCTGGTTATTGGGG+AGG - Chr3:74480958-74480977 MsG0380015739.01.T01:three_prime_UTR 50.0%
GGTGGATGATACCACGTGTT+GGG - Chr3:74479759-74479778 MsG0380015739.01.T01:intron 50.0%
TTCCTGCAAAGTTGCGCGAA+AGG + Chr3:74479938-74479957 None:intergenic 50.0%
! AAGTTGCTTGGTGGACATGC+AGG - Chr3:74482947-74482966 MsG0380015739.01.T01:five_prime_UTR 50.0%
! TGGTGGATGATACCACGTGT+TGG - Chr3:74479758-74479777 MsG0380015739.01.T01:intron 50.0%
!! TGCAGTAGCAAGAGCATCTG+AGG - Chr3:74481455-74481474 MsG0380015739.01.T01:three_prime_UTR 50.0%
ACATTAGGTTCAGGGTGCGG+TGG - Chr3:74481212-74481231 MsG0380015739.01.T01:three_prime_UTR 55.0%
AGCCTTTCGCGCAACTTTGC+AGG - Chr3:74479933-74479952 MsG0380015739.01.T01:three_prime_UTR 55.0%
AGGACGAGTGCCTTATGGTG+AGG - Chr3:74479381-74479400 MsG0380015739.01.T01:three_prime_UTR 55.0%
ATTGCCAAGGAGCAGGAAGC+TGG - Chr3:74482137-74482156 MsG0380015739.01.T01:intron 55.0%
CTTGCGGATTTCCCAACACG+TGG + Chr3:74479773-74479792 None:intergenic 55.0%
GACGAGTGCCTTATGGTGAG+GGG - Chr3:74479383-74479402 MsG0380015739.01.T01:three_prime_UTR 55.0%
GCAGCAGCAAGAGCAATAGG+TGG - Chr3:74481709-74481728 MsG0380015739.01.T01:intron 55.0%
GGACGAGTGCCTTATGGTGA+GGG - Chr3:74479382-74479401 MsG0380015739.01.T01:three_prime_UTR 55.0%
TCCCGTCATGTCTTCACCCT+CGG - Chr3:74479496-74479515 MsG0380015739.01.T01:intron 55.0%
TGAGGTGGGTGGAAGAAGGT+TGG + Chr3:74479208-74479227 None:intergenic 55.0%
TGCCGAGGGTGAAGACATGA+CGG + Chr3:74479501-74479520 None:intergenic 55.0%
! CTTGGTGGACATGCAGGAGA+AGG - Chr3:74482953-74482972 MsG0380015739.01.T01:five_prime_UTR 55.0%
! TCAGGTTGCCCCTCACCATA+AGG + Chr3:74479394-74479413 None:intergenic 55.0%
! TGTGTCGGTGTGGTTTCCGA+TGG + Chr3:74482172-74482191 None:intergenic 55.0%
GCCGAGGGTGAAGACATGAC+GGG + Chr3:74479500-74479519 None:intergenic 60.0%
GGCAGAGGATGTGGCCGATT+TGG - Chr3:74482900-74482919 MsG0380015739.01.T01:five_prime_UTR 60.0%
TCTTCACCCTCGGCACTCTC+CGG - Chr3:74479506-74479525 MsG0380015739.01.T01:intron 60.0%
TTGGCCAGCTTCCTGCTCCT+TGG + Chr3:74482144-74482163 None:intergenic 60.0%
! CTTGCTAGCTGTGGCGTCGA+TGG - Chr3:74481158-74481177 MsG0380015739.01.T01:three_prime_UTR 60.0%
!! AGACTCACCGGAGAGTGCCG+AGG + Chr3:74479516-74479535 None:intergenic 65.0%
!! GACTCACCGGAGAGTGCCGA+GGG + Chr3:74479515-74479534 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74478963 74483262 74478963 ID=MsG0380015739.01;Name=MsG0380015739.01
Chr3 mRNA 74478963 74483205 74478963 ID=MsG0380015739.01.T01;Parent=MsG0380015739.01;Name=MsG0380015739.01.T01;_AED=0.40;_eAED=0.40;_QI=301|0.91|1|1|0.5|0.46|13|1795|124
Chr3 exon 74482698 74483106 74482698 ID=MsG0380015739.01.T01:exon:14351;Parent=MsG0380015739.01.T01
Chr3 exon 74483139 74483205 74483139 ID=MsG0380015739.01.T01:exon:14350;Parent=MsG0380015739.01.T01
Chr3 five_prime_UTR 74483139 74483205 74483139 ID=MsG0380015739.01.T01:five_prime_utr;Parent=MsG0380015739.01.T01
Chr3 five_prime_UTR 74482873 74483106 74482873 ID=MsG0380015739.01.T01:five_prime_utr;Parent=MsG0380015739.01.T01
Chr3 CDS 74482698 74482872 74482698 ID=MsG0380015739.01.T01:cds;Parent=MsG0380015739.01.T01
Chr3 CDS 74482039 74482129 74482039 ID=MsG0380015739.01.T01:cds;Parent=MsG0380015739.01.T01
Chr3 CDS 74481834 74481942 74481834 ID=MsG0380015739.01.T01:cds;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74481803 74481833 74481803 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74481582 74481689 74481582 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74481383 74481501 74481383 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74480878 74481286 74480878 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74480641 74480782 74480641 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74480476 74480543 74480476 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74480234 74480365 74480234 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74479930 74480140 74479930 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74479552 74479640 74479552 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 three_prime_UTR 74478963 74479448 74478963 ID=MsG0380015739.01.T01:three_prime_utr;Parent=MsG0380015739.01.T01
Chr3 mRNA 74478963 74483262 74478963 ID=MsG0380015739.01.T02;Parent=MsG0380015739.01;Name=MsG0380015739.01.T02;_AED=0.39;_eAED=0.39;_QI=390|0.90|1|1|0.54|0.5|12|1795|124
Chr3 exon 74482698 74483262 74482698 ID=MsG0380015739.01.T02:exon:14363;Parent=MsG0380015739.01.T02
Chr3 five_prime_UTR 74482873 74483262 74482873 ID=MsG0380015739.01.T02:five_prime_utr;Parent=MsG0380015739.01.T02
Chr3 CDS 74482698 74482872 74482698 ID=MsG0380015739.01.T02:cds;Parent=MsG0380015739.01.T02
Chr3 CDS 74482039 74482129 74482039 ID=MsG0380015739.01.T02:cds;Parent=MsG0380015739.01.T02
Chr3 CDS 74481834 74481942 74481834 ID=MsG0380015739.01.T02:cds;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74481803 74481833 74481803 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74481582 74481689 74481582 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74481383 74481501 74481383 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74480878 74481286 74480878 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74480641 74480782 74480641 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74480476 74480543 74480476 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74480234 74480365 74480234 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74479930 74480140 74479930 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74479552 74479640 74479552 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 three_prime_UTR 74478963 74479448 74478963 ID=MsG0380015739.01.T02:three_prime_utr;Parent=MsG0380015739.01.T02
Chr3 mRNA 74478963 74481721 74478963 ID=MsG0380015739.01.T03;Parent=MsG0380015739.01;Name=MsG0380015739.01.T03;_AED=0.43;_eAED=0.45;_QI=0|0.62|0.44|1|1|1|9|216|466
Chr3 exon 74479930 74480112 74479930 ID=MsG0380015739.01.T03:exon:14368;Parent=MsG0380015739.01.T03
Chr3 exon 74480241 74480365 74480241 ID=MsG0380015739.01.T03:exon:14367;Parent=MsG0380015739.01.T03
Chr3 exon 74480862 74481183 74480862 ID=MsG0380015739.01.T03:exon:14366;Parent=MsG0380015739.01.T03
Chr3 exon 74481440 74481501 74481440 ID=MsG0380015739.01.T03:exon:14365;Parent=MsG0380015739.01.T03
Chr3 exon 74481582 74481721 74481582 ID=MsG0380015739.01.T03:exon:14364;Parent=MsG0380015739.01.T03
Chr3 CDS 74481582 74481721 74481582 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74481440 74481501 74481440 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74480862 74481183 74480862 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74480641 74480782 74480641 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74480476 74480543 74480476 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74480241 74480365 74480241 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74479930 74480112 74479930 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74479552 74479640 74479552 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 CDS 74479179 74479448 74479179 ID=MsG0380015739.01.T03:cds;Parent=MsG0380015739.01.T03
Chr3 three_prime_UTR 74478963 74479178 74478963 ID=MsG0380015739.01.T03:three_prime_utr;Parent=MsG0380015739.01.T03
Gene Sequence

>MsG0380015739.01.T01

ATGACTATTTCGGTTGTACCTAAAGTGAAGGACGAGTGCCTTATGGTGAGGGGCAACCTGATTCTCACAATGTCCCTCAAAACAGTTGTTTCACCTGTTTCAGCTGGGTCTGCTTTTTTAGGTGCAACTTCTCCTATTCTAGTTCCCGTCATGTCTTCACCCTCGGCACTCTCCGGAGATGCCTATGTTCAAACTTCACAATCCCATGAGGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGCTAATCAAAGATTCTATCAAGATATTGGAGAAACACAAAGGAACTTTCTGTCATCTTGAAAATAAGGAGACTCCTGTACATCTTGATTTGTTTGGATGGTGCACTGGGATGCATTTTACACTAAAGTAA

>MsG0380015739.01.T03

ATGTTGATTTGTTTTCTATTTAAATTAAACAGTCTCTCAAGTGGAGGTTTTACACCAAAGTTTATCATCGTTGATGATGGATGGCAAGAGACGTACAATGAATTTTTCAAAGAAGGCGAACCGATAATTGAAGGAACCCAGTTTGCAACAAGGCTGATAGACATTAAGGAAAATTTGAAGTTCAGAAGTGATGGCTCCAACATCAGTGGTTCCACAGGGAACCTTAGAGATATAGCCATGGACAGCCTGGAAAAATATGGAGTGGGAATGATAGATCCATCAAAATTTTATGACTTTTACAATGACTATCACAGTTATCTTGCTAGCTGTGGCGTCGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACATTAGGTTCAGGGTGCGGTGGACGTGTTTCATTAACAAAACGACATCAAGAAGCATTAGAGACATCAATAGCAAGGAACTTTGAGCACAATAACCTCATTGTTGCATGTCTCACAACTCTGATTCAATTTACAGGTTTGCATTCTCACTATTCAAAGAAGAGTGCAGTAGCAAGAGCATCTGAGGATTTCATGCCAAGGGAACCAACATTTCAAACCTTACATGTTGCGTCGGTAGCTTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCAAAGCAAGCACGAGACGGCTGAGTTCCATGCAGCAGCAAGAGCAATAGGTGGTTGTGCAGTATATGTTAGTGATAAGCCTGGCAATCATGATTTTAAAATCTTGAAGAAGCTAGTACTACCTGGATCAGTCTTGAGAGCAAGATATGCTGGCCGTCCTACTCGAGATTGTTTGTTTCAGGATCCAGTAATGGATGCTGACTGGGGTCATAGGCGTCTTAATTGCCAAGGAGCAGGAAGCTGGCCAATGAAACCATCGGAAACCACACCGACACACTTAACCATTTCAGGAAAAGTTAGACCACTTGATGTTGAGTTTCTTGAAGAGGTTGCTGGTGAAAATTGGAATGGAGATTGCATACTATATGCCTTCAATGCAGGCTTGCTTTCCAAGCTGCCTAGTAGAGGAAAATTAGAAGTATCCTTGGAGACTCTTCAATGTGAAGTATATACAGTATCTCCAATCAGGGTATTTGGTCATCATATGCAATTTGCGCCAATTGGATTGCTTGACATGTACAATTCAGGAGGAGCTGTAGAAGAATTGTCCTGCATAAGGGATGCTGCAAATTGCACAATAGTAAACATCAAAGGCAGAGGATGTGGCCGATTTGGAGCGTACTCCAATGTTAGACCGAAAAGTTGCTTGGTGGACATGCAGGAGAAGGAGTTTTCCTACAACTCTGAAGATGGATTACTGACCATTAAACTTGATGGTGAAGGCAACAAAGGGACATAG

>MsG0380015739.01.T02

ATGACTATTTCGGTTGTACCTAAAGTGAAGGACGAGTGCCTTATGGTGAGGGGCAACCTGATTCTCACAATGTCCCTCAAAACAGTTGTTTCACCTGTTTCAGCTGGGTCTGCTTTTTTAGGTGCAACTTCTCCTATTCTAGTTCCCGTCATGTCTTCACCCTCGGCACTCTCCGGAGATGCCTATGTTCAAACTTCACAATCCCATGAGGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGCTAATCAAAGATTCTATCAAGATATTGGAGAAACACAAAGGAACTTTCTGTCATCTTGAAAATAAGGAGACTCCTGTACATCTTGATTTGTTTGGATGGTGCACTGGGATGCATTTTACACTAAAGTAA
Protein sequence

>MsG0380015739.01.T01

MTISVVPKVKDECLMVRGNLILTMSLKTVVSPVSAGSAFLGATSPILVPVMSSPSALSGDAYVQTSQSHEAVFVNSGDNPFELIKDSIKILEKHKGTFCHLENKETPVHLDLFGWCTGMHFTLK*

>MsG0380015739.01.T03

MLICFLFKLNSLSSGGFTPKFIIVDDGWQETYNEFFKEGEPIIEGTQFATRLIDIKENLKFRSDGSNISGSTGNLRDIAMDSLEKYGVGMIDPSKFYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGCGGRVSLTKRHQEALETSIARNFEHNNLIVACLTTLIQFTGLHSHYSKKSAVARASEDFMPREPTFQTLHVASVAFNSLLLGEIFVPDWDMFQSKHETAEFHAAARAIGGCAVYVSDKPGNHDFKILKKLVLPGSVLRARYAGRPTRDCLFQDPVMDADWGHRRLNCQGAGSWPMKPSETTPTHLTISGKVRPLDVEFLEEVAGENWNGDCILYAFNAGLLSKLPSRGKLEVSLETLQCEVYTVSPIRVFGHHMQFAPIGLLDMYNSGGAVEELSCIRDAANCTIVNIKGRGCGRFGAYSNVRPKSCLVDMQEKEFSYNSEDGLLTIKLDGEGNKGT*

>MsG0380015739.01.T02

MTISVVPKVKDECLMVRGNLILTMSLKTVVSPVSAGSAFLGATSPILVPVMSSPSALSGDAYVQTSQSHEAVFVNSGDNPFELIKDSIKILEKHKGTFCHLENKETPVHLDLFGWCTGMHFTLK*