AlfalfaGEDB | MsG0480021958.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021958.01

KEGG: -
GO: -
PFAM: PF13839 PF14416

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021958.01.T01	XP_003607565.1	97.534	365	5	1	56	416	1	365	0	750

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021958.01.T01	Q9SIN2	63.855	332	119	1	84	414	33	364	5.02E-165	471

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021958.01.T01	G7JV22	97.534	365	5	1	56	416	1	365	0.0	750

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000373.01	MsG0480021958.01	0.802107	6.562650e-49	3.187693e-46
MsG0180003509.01	MsG0480021958.01	0.808757	2.646927e-50	1.526091e-47
MsG0180004027.01	MsG0480021958.01	0.855886	4.668464e-62	1.093910e-58
MsG0180004126.01	MsG0480021958.01	0.830863	2.311339e-55	2.465836e-52
MsG0180004495.01	MsG0480021958.01	0.806582	7.670788e-50	4.178760e-47
MsG0180004510.01	MsG0480021958.01	0.814585	1.429495e-51	9.629921e-49
MsG0180004989.01	MsG0480021958.01	0.844631	6.706616e-59	1.089344e-55
MsG0180005504.01	MsG0480021958.01	0.808723	2.692466e-50	1.550882e-47
MsG0180005667.01	MsG0480021958.01	0.833077	6.560074e-56	7.474359e-53
MsG0180006023.01	MsG0480021958.01	0.809030	2.314011e-50	1.343877e-47

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PPI

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Gene1	Gene2	Type
MsG0480021958.01	MsG0280006821.01	PPI
MsG0480021958.01	MsG0380013840.01	PPI
MsG0480021958.01	MsG0580025819.01	PPI
MsG0480021958.01	MsG0280006865.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021958.01.T01	MTR_4g079700	97.534	365	5	1	56	416	1	365	0.0	750
MsG0480021958.01.T01	MTR_2g091175	75.783	351	77	1	72	414	16	366	0.0	567
MsG0480021958.01.T01	MTR_2g015720	59.322	354	139	4	65	415	8	359	3.26e-153	437
MsG0480021958.01.T01	MTR_4g087730	59.748	318	127	1	98	414	45	362	9.80e-142	409
MsG0480021958.01.T01	MTR_4g088030	58.255	321	133	1	95	414	30	350	3.35e-139	402
MsG0480021958.01.T01	MTR_3g049330	55.937	320	138	2	98	414	31	350	1.30e-134	390
MsG0480021958.01.T01	MTR_2g073510	56.289	318	135	3	98	411	33	350	5.10e-131	381
MsG0480021958.01.T01	MTR_5g034810	51.240	363	162	4	55	414	2	352	3.19e-130	379
MsG0480021958.01.T01	MTR_3g021060	51.351	333	155	2	85	416	39	365	4.79e-128	374
MsG0480021958.01.T01	MTR_3g035830	50.000	332	159	2	86	416	25	350	4.32e-124	363

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021958.01.T01	AT2G42570	63.855	332	119	1	84	414	33	364	5.12e-166	471
MsG0480021958.01.T01	AT2G31110	58.659	358	144	3	61	415	7	363	1.04e-162	462
MsG0480021958.01.T01	AT1G29050	61.491	322	123	1	95	415	58	379	9.11e-155	442
MsG0480021958.01.T01	AT2G34070	61.250	320	122	2	98	415	65	384	3.34e-149	429
MsG0480021958.01.T01	AT3G14850	57.009	321	134	3	95	411	31	351	6.15e-133	386
MsG0480021958.01.T01	AT1G78710	50.440	341	162	5	78	414	19	356	5.21e-124	363
MsG0480021958.01.T01	AT2G30900	50.769	325	154	4	98	416	43	367	1.29e-119	353
MsG0480021958.01.T01	AT2G34070	61.200	250	95	2	168	415	1	250	6.08e-113	331
MsG0480021958.01.T01	AT5G58600	48.214	336	156	5	97	414	65	400	3.56e-109	327
MsG0480021958.01.T01	AT2G31110	62.385	218	82	0	95	312	42	259	8.70e-106	313

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Find 109 sgRNAs with CRISPR-Local

Find 655 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAAGAGCTTCCGCTTG+AGG	0.604551	4:+66427046	None:intergenic
AAATATTTAATTTGATGTTT+TGG	0.255647	4:-66417265	MsG0480021958.01.T01:three_prime_UTR
AAATTGTTTCGCAGGTTCAA+TGG	0.460433	4:-66420258	MsG0480021958.01.T01:intron
AACATATTTGGTACAATTAA+AGG	0.190331	4:+66417165	None:intergenic
AACTTTCTGAAGGGTAATAG+AGG	0.429506	4:-66420231	MsG0480021958.01.T01:CDS
AAGAAGACTTTGGTTTGTGC+TGG	0.422122	4:+66417806	None:intergenic
AAGAGTGGTGAAGCTTGGAG+AGG	0.679537	4:-66418094	MsG0480021958.01.T01:CDS
AAGCACTGAAACCATTTCTT+GGG	0.414434	4:+66420621	None:intergenic
AAGCCATTGGTGTCCCTCCA+GGG	0.581911	4:+66417573	None:intergenic
AAGCTTGACTCAATCAAGAG+TGG	0.662012	4:-66418109	MsG0480021958.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAAGAATGCAAGGA+GGG	+	Chr4:66420242-66420261	None:intergenic	30.0%
AAAGAATTGATGTGATTGGT+TGG	-	Chr4:66424513-66424532	MsG0480021958.01.T01:intron	30.0%
AACAAATGAGATGCTTCATA+AGG	-	Chr4:66422365-66422384	MsG0480021958.01.T01:intron	30.0%
AACACATATTAACGACAACA+TGG	+	Chr4:66419056-66419075	None:intergenic	30.0%
AACATCAAATCCGGTAAAAA+TGG	-	Chr4:66422322-66422341	MsG0480021958.01.T01:intron	30.0%
AATGGTTTGAACTTTCTGAA+GGG	-	Chr4:66423890-66423909	MsG0480021958.01.T01:intron	30.0%
AATTCCTAAGAAGAAGACTT+TGG	+	Chr4:66426337-66426356	None:intergenic	30.0%
AATTTGAACCCTAGAAATTG+GGG	+	Chr4:66418463-66418482	None:intergenic	30.0%
ACATGAAATTTCGAAACTCT+AGG	+	Chr4:66418294-66418313	None:intergenic	30.0%
ACCAACAAAAGAACACAAAA+TGG	+	Chr4:66423825-66423844	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	66417075	66427077	66417075	ID=MsG0480021958.01;Name=MsG0480021958.01
Chr4	mRNA	66417075	66427077	66417075	ID=MsG0480021958.01.T01;Parent=MsG0480021958.01;Name=MsG0480021958.01.T01;_AED=0.49;_eAED=0.53;_QI=0\|0.8\|0.66\|1\|0.8\|0.83\|6\|301\|416
Chr4	exon	66417075	66417664	66417075	ID=MsG0480021958.01.T01:exon:18237;Parent=MsG0480021958.01.T01
Chr4	exon	66417779	66417937	66417779	ID=MsG0480021958.01.T01:exon:18236;Parent=MsG0480021958.01.T01
Chr4	exon	66418034	66418209	66418034	ID=MsG0480021958.01.T01:exon:18235;Parent=MsG0480021958.01.T01
Chr4	exon	66420095	66420266	66420095	ID=MsG0480021958.01.T01:exon:18234;Parent=MsG0480021958.01.T01
Chr4	exon	66420346	66420684	66420346	ID=MsG0480021958.01.T01:exon:18233;Parent=MsG0480021958.01.T01
Chr4	exon	66426962	66427077	66426962	ID=MsG0480021958.01.T01:exon:18232;Parent=MsG0480021958.01.T01
Chr4	CDS	66426962	66427077	66426962	ID=MsG0480021958.01.T01:cds;Parent=MsG0480021958.01.T01
Chr4	CDS	66420346	66420684	66420346	ID=MsG0480021958.01.T01:cds;Parent=MsG0480021958.01.T01
Chr4	CDS	66420095	66420266	66420095	ID=MsG0480021958.01.T01:cds;Parent=MsG0480021958.01.T01
Chr4	CDS	66418034	66418209	66418034	ID=MsG0480021958.01.T01:cds;Parent=MsG0480021958.01.T01
Chr4	CDS	66417779	66417937	66417779	ID=MsG0480021958.01.T01:cds;Parent=MsG0480021958.01.T01
Chr4	CDS	66417376	66417664	66417376	ID=MsG0480021958.01.T01:cds;Parent=MsG0480021958.01.T01
Chr4	three_prime_UTR	66417075	66417375	66417075	ID=MsG0480021958.01.T01:three_prime_utr;Parent=MsG0480021958.01.T01

Gene Sequence

>MsG0480021958.01.T01

ATGCTCTCCCCTCAAGCGGAAGCTCTTACTTTGCCTGTATCGTCGATGCTGCACAAGGAGCCACCTGCTGCTTGTACCATCGTTGCTGCTTTCTGCGCAACTGACCGGCTGCCTCGTCCTTTTTTCATTCAAAAGAAATCGTGGGTTGGGAACAAAACCCAAGAAATGGTTTCAGTGCTTGTAAATGCTCTGCTTCTAACTCTGTTTCTGTTTTCCCACCAAACAAAATCAGAGGATTTTAACTCTTTCAGCAATGAGACCAACTTTGAAGTCAGTAACATTGCAGGAACATGTAACTTGTTCCGTGGCAAATGGGTCTACGACGCTTCATATCCTCTCTATAACCCTTCAACTTGTCCTTTCATAGATCCACAGTTCAATTGTCAGAAACATGGTCGCAAAGATAAGCTTTACCAGAAATATAGGTGGATGCCATTTTCTTGTAACATGCCAAGGTTCAATGGTTTGAACTTTCTGAAGGGTAATAGAGGGAAGAAGATTATGTTTGTTGGTGACTCTTTGAGCTTAAACCAGTTCAATTCGTTAGCTTGTATGATCCATGCTGCTGTACCAAATTCTAGAAGCACATTCAGACAAAGAGATGCTATCTCTTCAGTCACATTTGAGGAGTATGGGCTTGAGTTATTTCTATACCGCACAGCATACTTGGTGGACCTTGATCATGATAAAGAAGGACGAGTATTGAAGCTTGACTCAATCAAGAGTGGTGAAGCTTGGAGAGGAATGGATGTGTTGATCTTCAACACGTGGCATTGGTGGACCCACACTGGAAGCTCACAACCATGGGATTATATTCAGGAGAATAAAAAGTTGTATAAAGACATGAATCGTTTTGTTGCATTCTACAAAGGACTACAAACTTGGGCTAGGTGGGTTGAAATGAATGTTAATCCAGCACAAACCAAAGTCTTCTTCTTAGGAATTTCTCCTGTACATTACCAGGGGAGAGATTGGAACCAACCAACAAAGTCATGCATGAGTGAGAAAGTGCCATATTTTGGTTTGAAATACCCTGGAGGGACACCAATGGCTTGGATGGTGGTGAACAAGGTGTTGAGAAGGATGAGTAAGCCAGTTTATTTCTTAGATGTGACAACTCTTTCACAATACAGAAAAGATGCACATCCTGAAGGTTATAGTGGTGTTATGGCAACTGATTGTAGCCACTGGTGTCTTCCTGGACTTCCTGATACTTGGAATCAGCTTCTCTATGCAGCACTTTCTCATTGA

Protein sequence

>MsG0480021958.01.T01

MLSPQAEALTLPVSSMLHKEPPAACTIVAAFCATDRLPRPFFIQKKSWVGNKTQEMVSVLVNALLLTLFLFSHQTKSEDFNSFSNETNFEVSNIAGTCNLFRGKWVYDASYPLYNPSTCPFIDPQFNCQKHGRKDKLYQKYRWMPFSCNMPRFNGLNFLKGNRGKKIMFVGDSLSLNQFNSLACMIHAAVPNSRSTFRQRDAISSVTFEEYGLELFLYRTAYLVDLDHDKEGRVLKLDSIKSGEAWRGMDVLIFNTWHWWTHTGSSQPWDYIQENKKLYKDMNRFVAFYKGLQTWARWVEMNVNPAQTKVFFLGISPVHYQGRDWNQPTKSCMSEKVPYFGLKYPGGTPMAWMVVNKVLRRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMATDCSHWCLPGLPDTWNQLLYAALSH*