AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031448.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031448.01.T01 MTR_6g023290 97.720 307 7 0 1 307 1 307 0.0 621
MsG0680031448.01.T01 MTR_6g023230 93.160 307 20 1 1 307 1 306 0.0 561
MsG0680031448.01.T01 MTR_6g023280 80.702 57 11 0 132 188 2 58 6.37e-28 103
MsG0680031448.01.T01 MTR_6g023270 54.867 113 28 2 22 117 35 141 7.84e-25 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031448.01.T01 AT5G40810 84.142 309 44 2 1 307 2 307 1.32e-179 498
MsG0680031448.01.T01 AT3G27240 84.142 309 44 2 1 307 2 307 1.93e-178 495
MsG0680031448.01.T01 AT5G40810 91.538 260 22 0 48 307 1 260 1.22e-168 468

Find 93 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAAAATATTCTTCATTT+TGG 0.111866 6:+20565799 None:intergenic
AGCTGGTGTCTCAGGTCTTT+TGG 0.163244 6:-20567985 MsG0680031448.01.T01:CDS
TTTAGAGCCCTTGCATTAAT+TGG 0.177750 6:-20568008 MsG0680031448.01.T01:CDS
ATGAGATTTGACATAGTTAT+TGG 0.216526 6:+20566100 None:intergenic
TTACGAAATGGAAGCGAAAT+TGG 0.244463 6:+20571247 None:intergenic
TATGTGTTTGCTCTTCTTAC+TGG 0.252038 6:-20567222 MsG0680031448.01.T01:CDS
ACACGCAGATGGGATTTAAA+TGG 0.254759 6:-20566272 MsG0680031448.01.T01:intron
GTGTTATTCAGCAGTTATTA+AGG 0.278894 6:-20570586 MsG0680031448.01.T01:CDS
AAGAAAAGGAGATTTATAAA+AGG 0.309677 6:-20565763 None:intergenic
ATGGATATTTGTACTTTCAT+TGG 0.329694 6:-20566253 MsG0680031448.01.T01:CDS
ATGGCTCCACCAGGAAAATA+AGG 0.345219 6:+20566606 None:intergenic
TGTTCGAGGTATAGAAATAA+AGG 0.356250 6:-20566031 MsG0680031448.01.T01:three_prime_UTR
AAAGCGGTCACTGAGTTTAC+CGG 0.394263 6:+20567434 None:intergenic
TTAATTGGAGCTGGTGTCTC+AGG 0.408185 6:-20567993 MsG0680031448.01.T01:CDS
TTTGATATCATACCGTGATT+TGG 0.414012 6:-20567553 MsG0680031448.01.T01:CDS
TACGAAATGGAAGCGAAATT+GGG 0.433925 6:+20571248 None:intergenic
GCGAAATTGGGAATGAAGAT+TGG 0.440021 6:+20571260 None:intergenic
AAATCTAGCAGCTGATTCAT+TGG 0.442861 6:+20567398 None:intergenic
AGTACCTGAGCTTCGGTAGC+AGG 0.444945 6:+20566531 None:intergenic
CTGCATACTATCGTCGTCTT+CGG 0.445619 6:-20566218 MsG0680031448.01.T01:CDS
AATTAATGCAAGGGCTCTAA+AGG 0.447468 6:+20568010 None:intergenic
TGCTTACAGGAGAATGAGAT+TGG 0.449957 6:+20570555 None:intergenic
AACATCTCACCCTCATCATT+AGG 0.454603 6:+20567465 None:intergenic
ACTGAGATTGAGGTGGTTGA+TGG 0.462032 6:-20567489 MsG0680031448.01.T01:CDS
AAATTGTTGAATGATACCTT+TGG 0.468693 6:-20565857 MsG0680031448.01.T01:three_prime_UTR
TAACTGCTGAATAACACTTC+CGG 0.468696 6:+20570592 None:intergenic
TGAAATAAGAAATTAAGAAA+AGG 0.474241 6:-20565777 MsG0680031448.01.T01:three_prime_UTR
TGAGATGGAAGAGCGAAAAC+TGG 0.475157 6:-20566377 MsG0680031448.01.T01:intron
TTTGGTGATAAGACTTAGAT+CGG 0.476391 6:+20567353 None:intergenic
TGATGAAGCTGAGCATGGCC+TGG 0.478869 6:-20567940 MsG0680031448.01.T01:CDS
GCAGCTGATTCATTGGCATA+TGG 0.480740 6:+20567405 None:intergenic
TCAGCTGCTAGATTTGCTAA+TGG 0.481738 6:-20567390 MsG0680031448.01.T01:CDS
GCCCTTGCATTAATTGGAGC+TGG 0.488291 6:-20568002 MsG0680031448.01.T01:CDS
TGGCTGCTCCAAGCTATCCA+TGG 0.490029 6:-20567920 MsG0680031448.01.T01:CDS
TCATGAGGCCATGGATAGCT+TGG 0.491735 6:+20567912 None:intergenic
TTGGGCTGCGGAACCTGAGA+TGG 0.499239 6:-20566392 MsG0680031448.01.T01:CDS
GAATTTACCACAACACCGGC+AGG 0.499511 6:+20567186 None:intergenic
ATGGATAGCTTGGAGCAGCC+AGG 0.501176 6:+20567922 None:intergenic
TATCAAAGACATGGAATGGC+AGG 0.507429 6:+20567569 None:intergenic
GGCAATGGCTACTGAGATTG+AGG 0.520932 6:-20567499 MsG0680031448.01.T01:CDS
GGTGAGATGTTTACGCGTCC+CGG 0.521774 6:-20567453 MsG0680031448.01.T01:CDS
TTACACAGAAGCGGAGGTAA+AGG 0.529627 6:-20567520 MsG0680031448.01.T01:CDS
ATGATATCAAAGACATGGAA+TGG 0.537539 6:+20567565 None:intergenic
ACATGAAAGTACCTGAGCTT+CGG 0.540618 6:+20566524 None:intergenic
TCGATAATCACGAAGAATGA+TGG 0.541883 6:-20568056 MsG0680031448.01.T01:CDS
TACCCCTGCTACCGAAGCTC+AGG 0.543312 6:-20566535 MsG0680031448.01.T01:intron
GTACCTGAGCTTCGGTAGCA+GGG 0.545684 6:+20566532 None:intergenic
ATTATCGATGACATAGATGA+AGG 0.546169 6:+20568071 None:intergenic
AAGACTTAGATCGGGAGGAT+AGG 0.547343 6:+20567362 None:intergenic
ATTTACCACAACACCGGCAG+GGG 0.559091 6:+20567188 None:intergenic
CATACTATCGTCGTCTTCGG+TGG 0.561768 6:-20566215 MsG0680031448.01.T01:CDS
TGTTCTTAAGTCTCGCAAGT+TGG 0.563450 6:-20566190 MsG0680031448.01.T01:CDS
AGGATCCCCTCATGAGGCCA+TGG 0.565016 6:+20567903 None:intergenic
ATCACGAAGAATGATGGTGC+TGG 0.570371 6:-20568050 MsG0680031448.01.T01:CDS
AATTGGGAATGAAGATTGGA+AGG 0.571045 6:+20571264 None:intergenic
GGCATGGCAATGGCTCCACC+AGG 0.572110 6:+20566597 None:intergenic
TTGGTGATAAGACTTAGATC+GGG 0.572832 6:+20567354 None:intergenic
ATTATAATGCAGATTAGAGA+AGG 0.578796 6:-20566642 MsG0680031448.01.T01:intron
CCAGTGTGGATTGAGATGGC+CGG 0.582741 6:-20570611 MsG0680031448.01.T01:intron
CACCAGCTCCAATTAATGCA+AGG 0.584280 6:+20568000 None:intergenic
GATTCATTGGCATATGGCTG+AGG 0.585594 6:+20567411 None:intergenic
AAATTCGTTGAGAGACTAGT+CGG 0.587885 6:-20566071 MsG0680031448.01.T01:three_prime_UTR
AAGCTATCCATGGCCTCATG+AGG 0.588625 6:-20567910 MsG0680031448.01.T01:CDS
CACAAGAAATTAAATTCCAA+AGG 0.598026 6:+20565841 None:intergenic
TCAGCTGATGAAGCTGAGCA+TGG 0.598104 6:-20567945 MsG0680031448.01.T01:CDS
TGGTGTTGCTTACACAGAAG+CGG 0.604005 6:-20567529 MsG0680031448.01.T01:CDS
AGCTATCCATGGCCTCATGA+GGG 0.606165 6:-20567909 MsG0680031448.01.T01:CDS
ACCAGCTCCAATTAATGCAA+GGG 0.607014 6:+20568001 None:intergenic
ATATCATACCGTGATTTGGT+TGG 0.618625 6:-20567549 MsG0680031448.01.T01:CDS
TGGCATATGGCTGAGGAAAG+CGG 0.621500 6:+20567418 None:intergenic
AAGCGGTCACTGAGTTTACC+GGG 0.621651 6:+20567435 None:intergenic
GTGATAAGACTTAGATCGGG+AGG 0.623034 6:+20567357 None:intergenic
AATTTACCACAACACCGGCA+GGG 0.624788 6:+20567187 None:intergenic
TACCTGAGCTTCGGTAGCAG+GGG 0.625058 6:+20566533 None:intergenic
TTATTCAGCAGTTATTAAGG+AGG 0.626397 6:-20570583 MsG0680031448.01.T01:CDS
AGAAGCGGAGGTAAAGGCAA+TGG 0.627083 6:-20567514 MsG0680031448.01.T01:CDS
ACGGTATGATATCAAAGACA+TGG 0.629932 6:+20567560 None:intergenic
GCTGCTAGATTTGCTAATGG+AGG 0.631927 6:-20567387 MsG0680031448.01.T01:CDS
TTTACCACAACACCGGCAGG+GGG 0.636438 6:+20567189 None:intergenic
GTTTCCAGTGTGGATTGAGA+TGG 0.638656 6:-20570615 MsG0680031448.01.T01:intron
GCTATCCATGGCCTCATGAG+GGG 0.655077 6:-20567908 MsG0680031448.01.T01:CDS
AAGCAACACCAACCAAATCA+CGG 0.657890 6:+20567541 None:intergenic
GAACTGAGGATCCCCTCATG+AGG 0.659838 6:+20567897 None:intergenic
GGTGCTGTTGAATATGAAGA+TGG 0.661076 6:-20566558 MsG0680031448.01.T01:CDS
AAGAGAATTTACCACAACAC+CGG 0.679783 6:+20567182 None:intergenic
ATGCCTAAAATGCTTAATGA+CGG 0.685307 6:-20566579 MsG0680031448.01.T01:CDS
GTTGATGGACCTAATGATGA+GGG 0.686132 6:-20567474 MsG0680031448.01.T01:CDS
AAGCATGATCATATGAACTG+AGG 0.690695 6:+20567883 None:intergenic
TGTTGCTTACACAGAAGCGG+AGG 0.694151 6:-20567526 MsG0680031448.01.T01:CDS
GGTTGATGGACCTAATGATG+AGG 0.695082 6:-20567475 MsG0680031448.01.T01:CDS
TTTATGAGCAGGATTCGTCG+TGG 0.711228 6:-20567621 MsG0680031448.01.T01:intron
AATGGCTACTGAGATTGAGG+TGG 0.749311 6:-20567496 MsG0680031448.01.T01:CDS
TTACCACAACACCGGCAGGG+GGG 0.770333 6:+20567190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAGAAAATAATAATTTAA+TGG - Chr6:20567036-20567055 MsG0680031448.01.T01:intron 10.0%
!! AAACTTATTGCAAAATTAAA+CGG - Chr6:20567602-20567621 MsG0680031448.01.T01:CDS 15.0%
!! AAATGCGATATAAATTAAAA+AGG + Chr6:20567296-20567315 None:intergenic 15.0%
!! GGTTAATTCAAATTTATATT+AGG - Chr6:20568473-20568492 MsG0680031448.01.T01:intron 15.0%
!! TGAAATAAGAAATTAAGAAA+AGG - Chr6:20571289-20571308 MsG0680031448.01.T01:five_prime_UTR 15.0%
!! TTATTTATAATTGTATGTCA+AGG - Chr6:20568407-20568426 MsG0680031448.01.T01:intron 15.0%
!!! AAAATTTTGATGTAATAACT+TGG + Chr6:20571177-20571196 None:intergenic 15.0%
!!! AAACTTCATTGAATATTTTA+TGG - Chr6:20568213-20568232 MsG0680031448.01.T01:intron 15.0%
!!! ATTCAAAATATTCTTCATTT+TGG + Chr6:20571270-20571289 None:intergenic 15.0%
!!! CAAGTTACATTTATTATTTT+TGG - Chr6:20570926-20570945 MsG0680031448.01.T01:intron 15.0%
!!! TATCTTTTGCATATAAATTT+TGG - Chr6:20571112-20571131 MsG0680031448.01.T01:intron 15.0%
!!! TATTTTTAGAGTATATAACA+TGG - Chr6:20566767-20566786 MsG0680031448.01.T01:intron 15.0%
!!! TGCAAATTTTTTTTAACTAT+CGG - Chr6:20568519-20568538 MsG0680031448.01.T01:intron 15.0%
!! AAAAAATTTGCAACAACATA+TGG + Chr6:20568511-20568530 None:intergenic 20.0%
!! AAAATTGAATAAGAAAGAGA+AGG + Chr6:20565864-20565883 None:intergenic 20.0%
!! ACAATACACAAAAATCAAAA+TGG + Chr6:20566033-20566052 None:intergenic 20.0%
!! TGTATGTTATACAAATTTGT+GGG - Chr6:20567223-20567242 MsG0680031448.01.T01:CDS 20.0%
!! TTGGAAAAATTCAAATTCAA+AGG + Chr6:20568436-20568455 None:intergenic 20.0%
!! TTGTATGTTATACAAATTTG+TGG - Chr6:20567222-20567241 MsG0680031448.01.T01:CDS 20.0%
!! TTGTTTCATTTATTGTCAAA+AGG + Chr6:20567964-20567983 None:intergenic 20.0%
!!! AAATCATATATTTTCTCAAG+TGG + Chr6:20570756-20570775 None:intergenic 20.0%
!!! GTATTCATCATTGATTTTTT+AGG - Chr6:20565974-20565993 MsG0680031448.01.T01:three_prime_UTR 20.0%
!!! GTTGTAAGTACATTTTTAAT+TGG - Chr6:20569340-20569359 MsG0680031448.01.T01:intron 20.0%
!!! TGTTGCTTTTTATATATGAA+TGG - Chr6:20566429-20566448 MsG0680031448.01.T01:intron 20.0%
!!! TTAAAAATCTGGTTTGTTTT+GGG + Chr6:20569982-20570001 None:intergenic 20.0%
!!! TTTAAAAATCTGGTTTGTTT+TGG + Chr6:20569983-20570002 None:intergenic 20.0%
!!! TTTTGATATGGACTAATTTT+TGG + Chr6:20567882-20567901 None:intergenic 20.0%
!!! TTTTTTATATCCTAAATGAC+CGG + Chr6:20568706-20568725 None:intergenic 20.0%
! AAAGAAGGATAGAATAATAG+AGG + Chr6:20570722-20570741 None:intergenic 25.0%
! AAATTGTTGAATGATACCTT+TGG - Chr6:20571209-20571228 MsG0680031448.01.T01:intron 25.0%
! AACTATGTTAAAAGTTTAGG+TGG - Chr6:20568564-20568583 MsG0680031448.01.T01:intron 25.0%
! AATCGGGTATAAAAATATGA+CGG - Chr6:20567443-20567462 MsG0680031448.01.T01:CDS 25.0%
! ACCCAAAAACATGAAAATAT+AGG + Chr6:20569231-20569250 None:intergenic 25.0%
! AGTCTAGAAAAAAGAAATCA+TGG + Chr6:20569411-20569430 None:intergenic 25.0%
! AGTGAAACTTTGATGAAAAA+TGG + Chr6:20568352-20568371 None:intergenic 25.0%
! ATAACGATTATACCTTCAAA+TGG - Chr6:20566137-20566156 MsG0680031448.01.T01:three_prime_UTR 25.0%
! ATCAACTAAAGCTATGATAT+GGG + Chr6:20568746-20568765 None:intergenic 25.0%
! ATGAGATTTGACATAGTTAT+TGG + Chr6:20570969-20570988 None:intergenic 25.0%
! ATGGATATTTGTACTTTCAT+TGG - Chr6:20570813-20570832 MsG0680031448.01.T01:intron 25.0%
! ATTATAATGCAGATTAGAGA+AGG - Chr6:20570424-20570443 MsG0680031448.01.T01:intron 25.0%
! ATTGATTGTATGCTTAGATA+TGG - Chr6:20566359-20566378 MsG0680031448.01.T01:intron 25.0%
! CACAAGAAATTAAATTCCAA+AGG + Chr6:20571228-20571247 None:intergenic 25.0%
! CCCAAAAACATGAAAATATA+GGG + Chr6:20569230-20569249 None:intergenic 25.0%
! CTCTAATCTGCATTATAATT+TGG + Chr6:20570423-20570442 None:intergenic 25.0%
! GAATTGATATGACAATTAGA+TGG + Chr6:20570310-20570329 None:intergenic 25.0%
! GGAAAATTGTTATAAACTCA+TGG + Chr6:20568916-20568935 None:intergenic 25.0%
! GGAAACTATGTTAAAAGTTT+AGG - Chr6:20568561-20568580 MsG0680031448.01.T01:intron 25.0%
! TAAGCATACAATCAATAGTA+AGG + Chr6:20566355-20566374 None:intergenic 25.0%
! TAATTTAATGGTATCACTAG+AGG - Chr6:20567048-20567067 MsG0680031448.01.T01:intron 25.0%
! TACAATAAGTATGTAAAGTG+TGG - Chr6:20567704-20567723 MsG0680031448.01.T01:intron 25.0%
! TATGGTAAATAACGACATTA+TGG - Chr6:20570145-20570164 MsG0680031448.01.T01:intron 25.0%
! TTAGAGTATATAACATGGAA+AGG - Chr6:20566772-20566791 MsG0680031448.01.T01:intron 25.0%
! TTAGGTCATTGTTTGATATA+GGG - Chr6:20568832-20568851 MsG0680031448.01.T01:intron 25.0%
! TTTGGATGAACATTATATCT+AGG + Chr6:20567864-20567883 None:intergenic 25.0%
!! AATAGTTATGTTTTACAGCA+TGG - Chr6:20567831-20567850 MsG0680031448.01.T01:intron 25.0%
!! AGACAACTGATTTAAAAATC+TGG + Chr6:20569993-20570012 None:intergenic 25.0%
!! ATTGCATTTACAACTTTTCA+TGG + Chr6:20568655-20568674 None:intergenic 25.0%
!! ATTTTCTGAATTTTATGAGC+AGG - Chr6:20569434-20569453 MsG0680031448.01.T01:intron 25.0%
!! CCCTATATTTTCATGTTTTT+GGG - Chr6:20569227-20569246 MsG0680031448.01.T01:intron 25.0%
!! CGATAACACAAGAAATTTTA+CGG + Chr6:20568615-20568634 None:intergenic 25.0%
!! GCATGCATATTTTCATTTAT+TGG + Chr6:20570092-20570111 None:intergenic 25.0%
!! GTTTTTATCGATGGAAAATT+TGG - Chr6:20567401-20567420 MsG0680031448.01.T01:CDS 25.0%
!! TAATGAGTTGGATAGAATTA+TGG - Chr6:20567125-20567144 MsG0680031448.01.T01:intron 25.0%
!! TAGTTAACCTTTGTATTTTC+AGG - Chr6:20569801-20569820 MsG0680031448.01.T01:intron 25.0%
!! TCATTGAATATTTTATGGCA+TGG - Chr6:20568218-20568237 MsG0680031448.01.T01:intron 25.0%
!! TCCCTATATTTTCATGTTTT+TGG - Chr6:20569226-20569245 MsG0680031448.01.T01:intron 25.0%
!! TTACATCAGATTTTTGTGAA+TGG - Chr6:20570390-20570409 MsG0680031448.01.T01:intron 25.0%
!! TTATAACAATTTTCCTTCCA+TGG - Chr6:20568921-20568940 MsG0680031448.01.T01:intron 25.0%
!! TTGCATTTACAACTTTTCAT+GGG + Chr6:20568654-20568673 None:intergenic 25.0%
!! TTTTTCATCAAAGTTTCACT+TGG - Chr6:20568352-20568371 MsG0680031448.01.T01:intron 25.0%
!!! CATATTTTTATACCCGATTT+TGG + Chr6:20567442-20567461 None:intergenic 25.0%
!!! CTAAGTGTTGTTTTTTGATA+TGG + Chr6:20567894-20567913 None:intergenic 25.0%
!!! GCACAATTTGTTATTAGATA+TGG - Chr6:20570127-20570146 MsG0680031448.01.T01:intron 25.0%
!!! TTTATTTTGTTGTTGCAGAT+GGG - Chr6:20570627-20570646 MsG0680031448.01.T01:intron 25.0%
!!! TTTTATTTTGTTGTTGCAGA+TGG - Chr6:20570626-20570645 MsG0680031448.01.T01:intron 25.0%
AAAAGTGGTAGTATTGTGTT+AGG - Chr6:20568173-20568192 MsG0680031448.01.T01:intron 30.0%
AAGAAAGAGAAGGATGATTA+GGG + Chr6:20565854-20565873 None:intergenic 30.0%
AAGTTTCCTGTTCATTATTC+TGG + Chr6:20567588-20567607 None:intergenic 30.0%
AATACCAAATCCCCTTAATT+TGG + Chr6:20566857-20566876 None:intergenic 30.0%
AATCACTCTCTCAAATAAAG+TGG + Chr6:20566702-20566721 None:intergenic 30.0%
ACACCTAATGAGAATGAATA+TGG - Chr6:20570191-20570210 MsG0680031448.01.T01:intron 30.0%
ACATAGTGACAAGAAGAATA+AGG + Chr6:20566226-20566245 None:intergenic 30.0%
AGAAGGAATGATAAATTGGA+TGG + Chr6:20567341-20567360 None:intergenic 30.0%
AGAGAGAAGGAATGATAAAT+TGG + Chr6:20567345-20567364 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - Chr6:20567113-20567132 MsG0680031448.01.T01:intron 30.0%
ATACCAAATCCCCTTAATTT+GGG + Chr6:20566856-20566875 None:intergenic 30.0%
ATCAAATTGTCTGTTGCTAA+TGG - Chr6:20568948-20568967 MsG0680031448.01.T01:intron 30.0%
ATCACCTTAAAATGCAAAAG+AGG + Chr6:20569304-20569323 None:intergenic 30.0%
ATGAAAATTATCACGAAGAG+AGG + Chr6:20566543-20566562 None:intergenic 30.0%
ATGATATCAAAGACATGGAA+TGG + Chr6:20569504-20569523 None:intergenic 30.0%
ATGCCTAAAATGCTTAATGA+CGG - Chr6:20570487-20570506 MsG0680031448.01.T01:intron 30.0%
ATTATCGATGACATAGATGA+AGG + Chr6:20568998-20569017 None:intergenic 30.0%
CACCATAATAGTCCATATAA+TGG + Chr6:20568863-20568882 None:intergenic 30.0%
CATGCTAAAATAAGGTTAAC+TGG - Chr6:20567775-20567794 MsG0680031448.01.T01:intron 30.0%
CTATACCTCGAACAAAAATA+GGG + Chr6:20571029-20571048 None:intergenic 30.0%
CTTAGGTCATTGTTTGATAT+AGG - Chr6:20568831-20568850 MsG0680031448.01.T01:intron 30.0%
GATCAACTAAAGCTATGATA+TGG + Chr6:20568747-20568766 None:intergenic 30.0%
GCATACTTCATGCTAAAATA+AGG - Chr6:20567767-20567786 MsG0680031448.01.T01:intron 30.0%
GTTATACAAATTTGTGGGAA+AGG - Chr6:20567228-20567247 MsG0680031448.01.T01:CDS 30.0%
TAAGAAAGAGAAGGATGATT+AGG + Chr6:20565855-20565874 None:intergenic 30.0%
TAAGCATGCAATTCAATTCT+TGG + Chr6:20566261-20566280 None:intergenic 30.0%
TATAGGGAAAAGCCATTATA+TGG - Chr6:20568848-20568867 MsG0680031448.01.T01:intron 30.0%
TATGTTAAAAGTTTAGGTGG+TGG - Chr6:20568567-20568586 MsG0680031448.01.T01:intron 30.0%
TCACCTTAAAATGCAAAAGA+GGG + Chr6:20569303-20569322 None:intergenic 30.0%
TCTATACCTCGAACAAAAAT+AGG + Chr6:20571030-20571049 None:intergenic 30.0%
TGATCACATTAACCATTTGA+AGG + Chr6:20566152-20566171 None:intergenic 30.0%
TGCTTAGATATGGAACTTTA+TGG - Chr6:20566369-20566388 MsG0680031448.01.T01:intron 30.0%
TGTTCGAGGTATAGAAATAA+AGG - Chr6:20571035-20571054 MsG0680031448.01.T01:intron 30.0%
TTATTCAGCAGTTATTAAGG+AGG - Chr6:20566483-20566502 MsG0680031448.01.T01:intron 30.0%
TTTGATATCATACCGTGATT+TGG - Chr6:20569513-20569532 MsG0680031448.01.T01:intron 30.0%
! AAATTGTGCTATTCCACATT+AGG + Chr6:20570116-20570135 None:intergenic 30.0%
! AATATTTAGGACTATGCTTC+TGG - Chr6:20566574-20566593 MsG0680031448.01.T01:CDS 30.0%
! AATGCACATCTTTTAGTCTA+AGG + Chr6:20566992-20567011 None:intergenic 30.0%
! AGCCATTATATGGACTATTA+TGG - Chr6:20568858-20568877 MsG0680031448.01.T01:intron 30.0%
! GTGTTATTCAGCAGTTATTA+AGG - Chr6:20566480-20566499 MsG0680031448.01.T01:intron 30.0%
! TCATATATTTTCTCAAGTGG+AGG + Chr6:20570753-20570772 None:intergenic 30.0%
! TCTTATCAGATCAGTTTTAC+AGG + Chr6:20567747-20567766 None:intergenic 30.0%
! TTTGGTGATAAGACTTAGAT+CGG + Chr6:20569716-20569735 None:intergenic 30.0%
!! AAAGGATACATTGGTTTATC+TGG - Chr6:20567246-20567265 MsG0680031448.01.T01:CDS 30.0%
!! TAAGGCTTTGTTTGAGAATT+TGG + Chr6:20566974-20566993 None:intergenic 30.0%
!! TGCAGAAGTTGATATATACT+GGG - Chr6:20569947-20569966 MsG0680031448.01.T01:intron 30.0%
!! TTATGGCATCATTTAGTTTG+TGG - Chr6:20570162-20570181 MsG0680031448.01.T01:intron 30.0%
!! TTGCAGAAGTTGATATATAC+TGG - Chr6:20569946-20569965 MsG0680031448.01.T01:intron 30.0%
!!! ATATAAATTTTGGCTCACTC+GGG - Chr6:20571122-20571141 MsG0680031448.01.T01:intron 30.0%
!!! ATGTTGTGTCATTTTTGTCT+TGG - Chr6:20570655-20570674 MsG0680031448.01.T01:intron 30.0%
!!! CACTATAATCCTTATTTTCC+TGG - Chr6:20570451-20570470 MsG0680031448.01.T01:intron 30.0%
!!! CATATAAATTTTGGCTCACT+CGG - Chr6:20571121-20571140 MsG0680031448.01.T01:intron 30.0%
!!! TATAATCCTTATTTTCCTGG+TGG - Chr6:20570454-20570473 MsG0680031448.01.T01:intron 30.0%
!!! TGTTGTGTCATTTTTGTCTT+GGG - Chr6:20570656-20570675 MsG0680031448.01.T01:intron 30.0%
!!! TTATTTTGTTGTTGCAGATG+GGG - Chr6:20570628-20570647 MsG0680031448.01.T01:intron 30.0%
AAATATGCATGCACCTAATG+TGG - Chr6:20570100-20570119 MsG0680031448.01.T01:intron 35.0%
AAATTCGTTGAGAGACTAGT+CGG - Chr6:20570995-20571014 MsG0680031448.01.T01:intron 35.0%
AAGAGAATTTACCACAACAC+CGG + Chr6:20569887-20569906 None:intergenic 35.0%
AAGCATGATCATATGAACTG+AGG + Chr6:20569186-20569205 None:intergenic 35.0%
AATTGGAGATGAGAGGATAA+GGG + Chr6:20567917-20567936 None:intergenic 35.0%
AATTGGGAATGAAGATTGGA+AGG + Chr6:20565805-20565824 None:intergenic 35.0%
ACGGTATGATATCAAAGACA+TGG + Chr6:20569509-20569528 None:intergenic 35.0%
AGAAAGAGAAGGATGATTAG+GGG + Chr6:20565853-20565872 None:intergenic 35.0%
AGAAGATAGCTCCCATTAAT+TGG + Chr6:20568803-20568822 None:intergenic 35.0%
AGTAAGTAATTGGAGATGAG+AGG + Chr6:20567924-20567943 None:intergenic 35.0%
ATTTGTGGGAAAGGATACAT+TGG - Chr6:20567237-20567256 MsG0680031448.01.T01:CDS 35.0%
CAATTTGATTGTTCCATGGA+AGG + Chr6:20568937-20568956 None:intergenic 35.0%
CAGACAATTTGATTGTTCCA+TGG + Chr6:20568941-20568960 None:intergenic 35.0%
CCAACTCACTATTAAGAAAC+TGG - Chr6:20568452-20568471 MsG0680031448.01.T01:intron 35.0%
CCACCATATTCATTCTCATT+AGG + Chr6:20570197-20570216 None:intergenic 35.0%
CCAGTTTCTTAATAGTGAGT+TGG + Chr6:20568455-20568474 None:intergenic 35.0%
CCTAATGAGAATGAATATGG+TGG - Chr6:20570194-20570213 MsG0680031448.01.T01:intron 35.0%
CGATGGAAAATTTGGATTCA+TGG - Chr6:20567409-20567428 MsG0680031448.01.T01:CDS 35.0%
CTATCTTCTATTACAGGCTT+AGG - Chr6:20568814-20568833 MsG0680031448.01.T01:intron 35.0%
CTCAAAAAATGAATCGGAGA+AGG + Chr6:20566829-20566848 None:intergenic 35.0%
GAAAAAAAGGAATGAGGAAG+TGG + Chr6:20566932-20566951 None:intergenic 35.0%
GACAATTCAAGTCACATGTA+AGG + Chr6:20570229-20570248 None:intergenic 35.0%
GATGACGTCTACAAAATAGA+TGG + Chr6:20568101-20568120 None:intergenic 35.0%
GCAGTAGTAGAGTAAGTAAT+TGG + Chr6:20567934-20567953 None:intergenic 35.0%
GCATTGGAAAAAAAGGAATG+AGG + Chr6:20566938-20566957 None:intergenic 35.0%
GGCGAACTCAAAAAATGAAT+CGG + Chr6:20566835-20566854 None:intergenic 35.0%
GTTTGAGAATTTGGAAGAGA+GGG + Chr6:20566965-20566984 None:intergenic 35.0%
TAAATCAGTTGTCTGAGTAG+TGG - Chr6:20569999-20570018 MsG0680031448.01.T01:intron 35.0%
TAACTGCTGAATAACACTTC+CGG + Chr6:20566477-20566496 None:intergenic 35.0%
TAAGGAAGAGATTCACAAGA+TGG + Chr6:20566208-20566227 None:intergenic 35.0%
TAATTGGAGATGAGAGGATA+AGG + Chr6:20567918-20567937 None:intergenic 35.0%
TACGAAATGGAAGCGAAATT+GGG + Chr6:20565821-20565840 None:intergenic 35.0%
TATATGAATGGTTTCCAGTG+TGG - Chr6:20566441-20566460 MsG0680031448.01.T01:intron 35.0%
TATGTGTTTGCTCTTCTTAC+TGG - Chr6:20569844-20569863 MsG0680031448.01.T01:intron 35.0%
TCGATAATCACGAAGAATGA+TGG - Chr6:20569010-20569029 MsG0680031448.01.T01:intron 35.0%
TGGAAAATTTGGATTCATGG+TGG - Chr6:20567412-20567431 MsG0680031448.01.T01:CDS 35.0%
TGTTTGAGAATTTGGAAGAG+AGG + Chr6:20566966-20566985 None:intergenic 35.0%
TTACGAAATGGAAGCGAAAT+TGG + Chr6:20565822-20565841 None:intergenic 35.0%
TTGTCGTTCATGCTTGTATA+TGG - Chr6:20570244-20570263 MsG0680031448.01.T01:intron 35.0%
TTTCGCTTATCACCTTGATT+CGG - Chr6:20565881-20565900 MsG0680031448.01.T01:three_prime_UTR 35.0%
TTTGAGAATTTGGAAGAGAG+GGG + Chr6:20566964-20566983 None:intergenic 35.0%
! AAATCTAGCAGCTGATTCAT+TGG + Chr6:20569671-20569690 None:intergenic 35.0%
! AAGGATAGAAGACTTTGGAA+GGG + Chr6:20566909-20566928 None:intergenic 35.0%
! AAGTTCTTGTTTCAAACGTC+AGG + Chr6:20568049-20568068 None:intergenic 35.0%
! AATTAATGCAAGGGCTCTAA+AGG + Chr6:20569059-20569078 None:intergenic 35.0%
! CTACCCTCTTTTGCATTTTA+AGG - Chr6:20569297-20569316 MsG0680031448.01.T01:intron 35.0%
! GCTTCTCGTATAGTTTTTCT+AGG + Chr6:20567084-20567103 None:intergenic 35.0%
! GGAACTTTATGGTTGATACT+TGG - Chr6:20566380-20566399 MsG0680031448.01.T01:CDS 35.0%
! GTCATTAAGCATTTTAGGCA+TGG + Chr6:20570488-20570507 None:intergenic 35.0%
! TTGGTGATAAGACTTAGATC+GGG + Chr6:20569715-20569734 None:intergenic 35.0%
! TTTAGAGCCCTTGCATTAAT+TGG - Chr6:20569058-20569077 MsG0680031448.01.T01:intron 35.0%
! TTTGAGTTCGCCCAAATTAA+GGG - Chr6:20566843-20566862 MsG0680031448.01.T01:intron 35.0%
!! ATATCATACCGTGATTTGGT+TGG - Chr6:20569517-20569536 MsG0680031448.01.T01:intron 35.0%
!! CTTTGTTTGGGAGTTTTGAT+GGG - Chr6:20566632-20566651 MsG0680031448.01.T01:CDS 35.0%
!! GTGGAGGATTTGTTAAAAGA+AGG + Chr6:20570737-20570756 None:intergenic 35.0%
!!! TTTTGAGTTCGCCCAAATTA+AGG - Chr6:20566842-20566861 MsG0680031448.01.T01:intron 35.0%
AAAAACGCAGATCCGAATCA+AGG + Chr6:20565896-20565915 None:intergenic 40.0%
AAAAGGAATGAGGAAGTGGA+AGG + Chr6:20566928-20566947 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG + Chr6:20566628-20566647 None:intergenic 40.0%
AAATGCCAGTCATGGTAGTA+TGG + Chr6:20567651-20567670 None:intergenic 40.0%
AACATCTCACCCTCATCATT+AGG + Chr6:20569604-20569623 None:intergenic 40.0%
AAGCAACACCAACCAAATCA+CGG + Chr6:20569528-20569547 None:intergenic 40.0%
AATGAATCGGAGAAGGACTT+TGG + Chr6:20566822-20566841 None:intergenic 40.0%
AATGGTATCACTAGAGGTAG+AGG - Chr6:20567054-20567073 MsG0680031448.01.T01:intron 40.0%
ACACGCAGATGGGATTTAAA+TGG - Chr6:20570794-20570813 MsG0680031448.01.T01:intron 40.0%
ACATAGATGAAGGATTCTGC+AGG + Chr6:20568988-20569007 None:intergenic 40.0%
ACCAGCTCCAATTAATGCAA+GGG + Chr6:20569068-20569087 None:intergenic 40.0%
ACGTCATCACTTCTTCATGA+TGG - Chr6:20568113-20568132 MsG0680031448.01.T01:intron 40.0%
AGAGAGGAGATAATGCTTAC+AGG + Chr6:20566527-20566546 None:intergenic 40.0%
AGTGGAAGGATAGAAGACTT+TGG + Chr6:20566914-20566933 None:intergenic 40.0%
ATATGTGACTCGTAGAGAGA+AGG + Chr6:20567358-20567377 None:intergenic 40.0%
CATCGATAAAAACGTGACTG+TGG + Chr6:20567394-20567413 None:intergenic 40.0%
CCTGTTCATTATTCTGGACA+CGG + Chr6:20567582-20567601 None:intergenic 40.0%
CGTCATCACTTCTTCATGAT+GGG - Chr6:20568114-20568133 MsG0680031448.01.T01:intron 40.0%
CTGTTCATTATTCTGGACAC+GGG + Chr6:20567581-20567600 None:intergenic 40.0%
GAAGGATAGAAGACTTTGGA+AGG + Chr6:20566910-20566929 None:intergenic 40.0%
GCAGACAACTGACATTACTT+TGG + Chr6:20569734-20569753 None:intergenic 40.0%
GCGAAATTGGGAATGAAGAT+TGG + Chr6:20565809-20565828 None:intergenic 40.0%
GCTAAGGGGAATTCTAAACA+CGG + Chr6:20568304-20568323 None:intergenic 40.0%
GTATTGTCACACTTGTGTAG+TGG + Chr6:20570365-20570384 None:intergenic 40.0%
TAGCTCCCATTAATTGGACT+TGG + Chr6:20568797-20568816 None:intergenic 40.0%
TATCAAAGACATGGAATGGC+AGG + Chr6:20569500-20569519 None:intergenic 40.0%
TGACAATTAGATGGTCGAGA+AGG + Chr6:20570301-20570320 None:intergenic 40.0%
TGACGAGCCTGAAAATACAA+AGG + Chr6:20569811-20569830 None:intergenic 40.0%
TGCTTACAGGAGAATGAGAT+TGG + Chr6:20566514-20566533 None:intergenic 40.0%
TGGCTCCAAGTCCAATTAAT+GGG - Chr6:20568789-20568808 MsG0680031448.01.T01:intron 40.0%
TGGGAGCTATCTTCTATTAC+AGG - Chr6:20568808-20568827 MsG0680031448.01.T01:intron 40.0%
TGTTCTTAAGTCTCGCAAGT+TGG - Chr6:20570876-20570895 MsG0680031448.01.T01:intron 40.0%
TTACACGACTGTTCAGAAAC+TGG + Chr6:20568272-20568291 None:intergenic 40.0%
TTGAGTTCGCCCAAATTAAG+GGG - Chr6:20566844-20566863 MsG0680031448.01.T01:intron 40.0%
TTGGCTCCAAGTCCAATTAA+TGG - Chr6:20568788-20568807 MsG0680031448.01.T01:intron 40.0%
! AAGCATTTTAGGCATGGCAA+TGG + Chr6:20570482-20570501 None:intergenic 40.0%
! AGCTTTAGTTGATCCCTGAT+AGG - Chr6:20568753-20568772 MsG0680031448.01.T01:intron 40.0%
! AGGATAGAAGACTTTGGAAG+GGG + Chr6:20566908-20566927 None:intergenic 40.0%
! ATATGTAGTAGCGACTAGCT+TGG + Chr6:20569270-20569289 None:intergenic 40.0%
! CACAGTCACGTTTTTATCGA+TGG - Chr6:20567392-20567411 MsG0680031448.01.T01:CDS 40.0%
! CACTTTTGCAAACACAGCAT+CGG + Chr6:20568160-20568179 None:intergenic 40.0%
! CTTGCAATCTGGGACTTAAA+TGG - Chr6:20566599-20566618 MsG0680031448.01.T01:CDS 40.0%
! CTTTTGTCAAATGCCAGTCA+TGG + Chr6:20567659-20567678 None:intergenic 40.0%
! GCACCGTCATTAAGCATTTT+AGG + Chr6:20570493-20570512 None:intergenic 40.0%
! GTTGATGGACCTAATGATGA+GGG - Chr6:20569592-20569611 MsG0680031448.01.T01:intron 40.0%
!! ACATGAAAGTACCTGAGCTT+CGG + Chr6:20570545-20570564 None:intergenic 40.0%
!! GGATACATTGGTTTATCTGG+AGG - Chr6:20567249-20567268 MsG0680031448.01.T01:intron 40.0%
!! GGCATCATTTAGTTTGTGGT+CGG - Chr6:20570166-20570185 MsG0680031448.01.T01:intron 40.0%
!! GGTAAAGATTTAGCTCTTGC+AGG - Chr6:20568540-20568559 MsG0680031448.01.T01:intron 40.0%
!! GGTGCTGTTGAATATGAAGA+TGG - Chr6:20570508-20570527 MsG0680031448.01.T01:intron 40.0%
!! TATGTAGTAGCGACTAGCTT+GGG + Chr6:20569269-20569288 None:intergenic 40.0%
!! TATTTTCAGGCTCGTCACAA+TGG - Chr6:20569814-20569833 MsG0680031448.01.T01:intron 40.0%
!! TCAGCTGCTAGATTTGCTAA+TGG - Chr6:20569676-20569695 MsG0680031448.01.T01:intron 40.0%
!!! GCTTTGTTTGGGAGTTTTGA+TGG - Chr6:20566631-20566650 MsG0680031448.01.T01:CDS 40.0%
AAAGCGGTCACTGAGTTTAC+CGG + Chr6:20569635-20569654 None:intergenic 45.0%
AAGACTTAGATCGGGAGGAT+AGG + Chr6:20569707-20569726 None:intergenic 45.0%
AATCGGAGAAGGACTTTGGA+GGG + Chr6:20566818-20566837 None:intergenic 45.0%
AATGGCTACTGAGATTGAGG+TGG - Chr6:20569570-20569589 MsG0680031448.01.T01:intron 45.0%
AATTTACCACAACACCGGCA+GGG + Chr6:20569882-20569901 None:intergenic 45.0%
ACATTGCTTCTACACGCAGA+TGG - Chr6:20570783-20570802 MsG0680031448.01.T01:intron 45.0%
ACTGAGATTGAGGTGGTTGA+TGG - Chr6:20569577-20569596 MsG0680031448.01.T01:intron 45.0%
AGAATTTGGAAGAGAGGGGA+GGG + Chr6:20566960-20566979 None:intergenic 45.0%
ATGGCTCCACCAGGAAAATA+AGG + Chr6:20570463-20570482 None:intergenic 45.0%
ATTTGGGGGAGAGAAAGAGA+TGG - Chr6:20566669-20566688 MsG0680031448.01.T01:intron 45.0%
CACCAGCTCCAATTAATGCA+AGG + Chr6:20569069-20569088 None:intergenic 45.0%
CATTGCTTCTACACGCAGAT+GGG - Chr6:20570784-20570803 MsG0680031448.01.T01:intron 45.0%
CCAAGTCATGCTCAATCTTC+CGG - Chr6:20568684-20568703 MsG0680031448.01.T01:intron 45.0%
CCGTGTCCAGAATAATGAAC+AGG - Chr6:20567579-20567598 MsG0680031448.01.T01:CDS 45.0%
CGATAAAAACGTGACTGTGG+AGG + Chr6:20567391-20567410 None:intergenic 45.0%
CGATGCTGTGTTTGCAAAAG+TGG - Chr6:20568158-20568177 MsG0680031448.01.T01:intron 45.0%
CGCATGTAGCAAATGCTAAG+GGG + Chr6:20568318-20568337 None:intergenic 45.0%
CTATGCCATACTACCATGAC+TGG - Chr6:20567643-20567662 MsG0680031448.01.T01:intron 45.0%
CTGCATACTATCGTCGTCTT+CGG - Chr6:20570848-20570867 MsG0680031448.01.T01:intron 45.0%
CTTCATGCTTCCACCATATG+CGG + Chr6:20567477-20567496 None:intergenic 45.0%
GATTCATTGGCATATGGCTG+AGG + Chr6:20569658-20569677 None:intergenic 45.0%
GCGCATGTAGCAAATGCTAA+GGG + Chr6:20568319-20568338 None:intergenic 45.0%
GCTCAATCTTCCGGTCATTT+AGG - Chr6:20568693-20568712 MsG0680031448.01.T01:intron 45.0%
GGGACTTAAATGGAGACCTT+AGG - Chr6:20566609-20566628 MsG0680031448.01.T01:CDS 45.0%
GGGGAAAGAGACTTACGAAA+TGG + Chr6:20565834-20565853 None:intergenic 45.0%
GGTACTTTCATGTGTTGCAG+AGG - Chr6:20570552-20570571 MsG0680031448.01.T01:intron 45.0%
GTGATAAGACTTAGATCGGG+AGG + Chr6:20569712-20569731 None:intergenic 45.0%
GTGTGGTGCTTTCATGAACT+TGG - Chr6:20567721-20567740 MsG0680031448.01.T01:intron 45.0%
TCATGGTGGCAAGCCAAAAT+CGG - Chr6:20567426-20567445 MsG0680031448.01.T01:CDS 45.0%
TCGCCCAAATTAAGGGGATT+TGG - Chr6:20566850-20566869 MsG0680031448.01.T01:intron 45.0%
TGAGATGGAAGAGCGAAAAC+TGG - Chr6:20570689-20570708 MsG0680031448.01.T01:intron 45.0%
TGCGCATGTAGCAAATGCTA+AGG + Chr6:20568320-20568339 None:intergenic 45.0%
TTAATTGGAGCTGGTGTCTC+AGG - Chr6:20569073-20569092 MsG0680031448.01.T01:intron 45.0%
TTACACAGAAGCGGAGGTAA+AGG - Chr6:20569546-20569565 MsG0680031448.01.T01:intron 45.0%
TTGGAAGGGGAAGGATTTGA+GGG + Chr6:20566895-20566914 None:intergenic 45.0%
TTTATGAGCAGGATTCGTCG+TGG - Chr6:20569445-20569464 MsG0680031448.01.T01:intron 45.0%
TTTGATGGGAGGGAAAGGTT+GGG - Chr6:20566646-20566665 MsG0680031448.01.T01:intron 45.0%
TTTGGAAGGGGAAGGATTTG+AGG + Chr6:20566896-20566915 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr6:20567194-20567213 None:intergenic 45.0%
! AGTTTTCGCTCTTCCATCTC+AGG + Chr6:20570690-20570709 None:intergenic 45.0%
! ATCACGAAGAATGATGGTGC+TGG - Chr6:20569016-20569035 MsG0680031448.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr6:20567195-20567214 None:intergenic 45.0%
! GCAGCTGATTCATTGGCATA+TGG + Chr6:20569664-20569683 None:intergenic 45.0%
! GTTTCCAGTGTGGATTGAGA+TGG - Chr6:20566451-20566470 MsG0680031448.01.T01:intron 45.0%
! TAGAAGACTTTGGAAGGGGA+AGG + Chr6:20566904-20566923 None:intergenic 45.0%
! TTTTGATGGGAGGGAAAGGT+TGG - Chr6:20566645-20566664 MsG0680031448.01.T01:intron 45.0%
!! ATGTAGTAGCGACTAGCTTG+GGG + Chr6:20569268-20569287 None:intergenic 45.0%
!! CATGATGGGTTGATGATGCT+GGG - Chr6:20568128-20568147 MsG0680031448.01.T01:intron 45.0%
!! GCTGCTAGATTTGCTAATGG+AGG - Chr6:20569679-20569698 MsG0680031448.01.T01:intron 45.0%
!! GCTTCTGGTTCTTGCAATCT+GGG - Chr6:20566589-20566608 MsG0680031448.01.T01:CDS 45.0%
!! GGAGACCTTAGGCTTTGTTT+GGG - Chr6:20566620-20566639 MsG0680031448.01.T01:CDS 45.0%
!! GGTTGATGGACCTAATGATG+AGG - Chr6:20569591-20569610 MsG0680031448.01.T01:intron 45.0%
!! GTTTGGGAGTTTTGATGGGA+GGG - Chr6:20566636-20566655 MsG0680031448.01.T01:intron 45.0%
!! TCATGATGGGTTGATGATGC+TGG - Chr6:20568127-20568146 MsG0680031448.01.T01:intron 45.0%
!! TGCTTCTGGTTCTTGCAATC+TGG - Chr6:20566588-20566607 MsG0680031448.01.T01:CDS 45.0%
!! TGGAGACCTTAGGCTTTGTT+TGG - Chr6:20566619-20566638 MsG0680031448.01.T01:CDS 45.0%
!! TGGTGTTGCTTACACAGAAG+CGG - Chr6:20569537-20569556 MsG0680031448.01.T01:intron 45.0%
!! TGTTTGGGAGTTTTGATGGG+AGG - Chr6:20566635-20566654 MsG0680031448.01.T01:intron 45.0%
!!! GCATGCCCTATTTTTGTTCG+AGG - Chr6:20571021-20571040 MsG0680031448.01.T01:intron 45.0%
!!! GTCATTTTTGTCTTGGGCTG+CGG - Chr6:20570662-20570681 MsG0680031448.01.T01:intron 45.0%
!!! ATGTTTTTTTTTTAATATTT+AGG - Chr6:20566561-20566580 MsG0680031448.01.T01:CDS 5.0%
AAGCGGTCACTGAGTTTACC+GGG + Chr6:20569634-20569653 None:intergenic 50.0%
AAGCTATCCATGGCCTCATG+AGG - Chr6:20569156-20569175 MsG0680031448.01.T01:intron 50.0%
AAGTCCAACGGAGTCCTATC+AGG + Chr6:20568770-20568789 None:intergenic 50.0%
AGAAGCGGAGGTAAAGGCAA+TGG - Chr6:20569552-20569571 MsG0680031448.01.T01:intron 50.0%
AGCTATCCATGGCCTCATGA+GGG - Chr6:20569157-20569176 MsG0680031448.01.T01:intron 50.0%
AGGGAAAGGTTGGGATTTGG+GGG - Chr6:20566655-20566674 MsG0680031448.01.T01:intron 50.0%
AGTCCAACGGAGTCCTATCA+GGG + Chr6:20568769-20568788 None:intergenic 50.0%
AGTTGTCTGAGTAGTGGTGC+GGG - Chr6:20570005-20570024 MsG0680031448.01.T01:intron 50.0%
ATTTACCACAACACCGGCAG+GGG + Chr6:20569881-20569900 None:intergenic 50.0%
CAGTTGTCTGAGTAGTGGTG+CGG - Chr6:20570004-20570023 MsG0680031448.01.T01:intron 50.0%
CATACTATCGTCGTCTTCGG+TGG - Chr6:20570851-20570870 MsG0680031448.01.T01:intron 50.0%
CATGGTGGCAAGCCAAAATC+GGG - Chr6:20567427-20567446 MsG0680031448.01.T01:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr6:20567193-20567212 MsG0680031448.01.T01:intron 50.0%
CCGGAAGATTGAGCATGACT+TGG + Chr6:20568687-20568706 None:intergenic 50.0%
CTACCCCACTTAGTGGGATA+AGG - Chr6:20567188-20567207 MsG0680031448.01.T01:intron 50.0%
CTTATCCCACTAAGTGGGGT+AGG + Chr6:20567190-20567209 None:intergenic 50.0%
GAATCGGAGAAGGACTTTGG+AGG + Chr6:20566819-20566838 None:intergenic 50.0%
GAATTTACCACAACACCGGC+AGG + Chr6:20569883-20569902 None:intergenic 50.0%
GAGAATTTGGAAGAGAGGGG+AGG + Chr6:20566961-20566980 None:intergenic 50.0%
GAGGGAAAGGTTGGGATTTG+GGG - Chr6:20566654-20566673 MsG0680031448.01.T01:intron 50.0%
GCCCTTGCATTAATTGGAGC+TGG - Chr6:20569064-20569083 MsG0680031448.01.T01:intron 50.0%
GGAGGGAAAGGTTGGGATTT+GGG - Chr6:20566653-20566672 MsG0680031448.01.T01:intron 50.0%
GGCAATGGCTACTGAGATTG+AGG - Chr6:20569567-20569586 MsG0680031448.01.T01:intron 50.0%
TCAGCTGATGAAGCTGAGCA+TGG - Chr6:20569121-20569140 MsG0680031448.01.T01:intron 50.0%
TCATGAGGCCATGGATAGCT+TGG + Chr6:20569157-20569176 None:intergenic 50.0%
TGATAGGACTCCGTTGGACT+TGG - Chr6:20568769-20568788 MsG0680031448.01.T01:intron 50.0%
TGGAAGGGGAAGGATTTGAG+GGG + Chr6:20566894-20566913 None:intergenic 50.0%
TGGCATATGGCTGAGGAAAG+CGG + Chr6:20569651-20569670 None:intergenic 50.0%
! AGCTGGTGTCTCAGGTCTTT+TGG - Chr6:20569081-20569100 MsG0680031448.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr6:20567196-20567215 None:intergenic 50.0%
! CGCATATGGTGGAAGCATGA+AGG - Chr6:20567475-20567494 MsG0680031448.01.T01:CDS 50.0%
! GCTGGTGTCTCAGGTCTTTT+GGG - Chr6:20569082-20569101 MsG0680031448.01.T01:intron 50.0%
! TGTTGCTTACACAGAAGCGG+AGG - Chr6:20569540-20569559 MsG0680031448.01.T01:intron 50.0%
!! GGAGTTTTGATGGGAGGGAA+AGG - Chr6:20566641-20566660 MsG0680031448.01.T01:intron 50.0%
!! GGGGAGGGCATTGGAAAAAA+AGG + Chr6:20566945-20566964 None:intergenic 50.0%
AGTACCTGAGCTTCGGTAGC+AGG + Chr6:20570538-20570557 None:intergenic 55.0%
ATGCAGCCTACCCCACTTAG+TGG - Chr6:20567181-20567200 MsG0680031448.01.T01:intron 55.0%
ATGGATAGCTTGGAGCAGCC+AGG + Chr6:20569147-20569166 None:intergenic 55.0%
GAACTGAGGATCCCCTCATG+AGG + Chr6:20569172-20569191 None:intergenic 55.0%
GATCCCTGATAGGACTCCGT+TGG - Chr6:20568763-20568782 MsG0680031448.01.T01:intron 55.0%
GCTATCCATGGCCTCATGAG+GGG - Chr6:20569158-20569177 MsG0680031448.01.T01:intron 55.0%
GGACTTGGAGCCAAGTCCAA+CGG + Chr6:20568782-20568801 None:intergenic 55.0%
GGGAGGGAAAGGTTGGGATT+TGG - Chr6:20566652-20566671 MsG0680031448.01.T01:intron 55.0%
GGTGAGATGTTTACGCGTCC+CGG - Chr6:20569613-20569632 MsG0680031448.01.T01:intron 55.0%
GTACCTGAGCTTCGGTAGCA+GGG + Chr6:20570537-20570556 None:intergenic 55.0%
TACCTGAGCTTCGGTAGCAG+GGG + Chr6:20570536-20570555 None:intergenic 55.0%
TGATGAAGCTGAGCATGGCC+TGG - Chr6:20569126-20569145 MsG0680031448.01.T01:intron 55.0%
TGCAGCCTACCCCACTTAGT+GGG - Chr6:20567182-20567201 MsG0680031448.01.T01:intron 55.0%
TGGCTGCTCCAAGCTATCCA+TGG - Chr6:20569146-20569165 MsG0680031448.01.T01:intron 55.0%
TTTACCACAACACCGGCAGG+GGG + Chr6:20569880-20569899 None:intergenic 55.0%
! ACGGTAGTGCTGAACCACGT+AGG + Chr6:20568596-20568615 None:intergenic 55.0%
! CCAGTGTGGATTGAGATGGC+CGG - Chr6:20566455-20566474 MsG0680031448.01.T01:intron 55.0%
! TTAGGTGGTGGCTTCCTACG+TGG - Chr6:20568579-20568598 MsG0680031448.01.T01:intron 55.0%
AGGATCCCCTCATGAGGCCA+TGG + Chr6:20569166-20569185 None:intergenic 60.0%
CCGGCCATCTCAATCCACAC+TGG + Chr6:20566458-20566477 None:intergenic 60.0%
GACGGATGTGCTGCCGCATA+TGG - Chr6:20567461-20567480 MsG0680031448.01.T01:CDS 60.0%
GGATGTGCTGCCGCATATGG+TGG - Chr6:20567464-20567483 MsG0680031448.01.T01:CDS 60.0%
TACCCCTGCTACCGAAGCTC+AGG - Chr6:20570531-20570550 MsG0680031448.01.T01:intron 60.0%
TTACCACAACACCGGCAGGG+GGG + Chr6:20569879-20569898 None:intergenic 60.0%
TTGGGCTGCGGAACCTGAGA+TGG - Chr6:20570674-20570693 MsG0680031448.01.T01:intron 60.0%
! TGGAAGAGAGGGGAGGGCAT+TGG + Chr6:20566954-20566973 None:intergenic 60.0%
GGCATGGCAATGGCTCCACC+AGG + Chr6:20570472-20570491 None:intergenic 65.0%
GGTTATCGTGACCCCCCTGC+CGG - Chr6:20569865-20569884 MsG0680031448.01.T01:intron 65.0%
! TGACCCCCCTGCCGGTGTTG+TGG - Chr6:20569873-20569892 MsG0680031448.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 20565765 20571323 20565765 ID=MsG0680031448.01;Name=MsG0680031448.01
Chr6 mRNA 20565765 20571323 20565765 ID=MsG0680031448.01.T01;Parent=MsG0680031448.01;Name=MsG0680031448.01.T01;_AED=0.38;_eAED=0.38;_QI=84|1|1|1|0.71|0.62|8|405|307
Chr6 exon 20565765 20566286 20565765 ID=MsG0680031448.01.T01:exon:13063;Parent=MsG0680031448.01.T01
Chr6 exon 20566378 20566443 20566378 ID=MsG0680031448.01.T01:exon:13062;Parent=MsG0680031448.01.T01
Chr6 exon 20566536 20566652 20566536 ID=MsG0680031448.01.T01:exon:13061;Parent=MsG0680031448.01.T01
Chr6 exon 20567194 20567265 20567194 ID=MsG0680031448.01.T01:exon:13060;Parent=MsG0680031448.01.T01
Chr6 exon 20567353 20567632 20567353 ID=MsG0680031448.01.T01:exon:13059;Parent=MsG0680031448.01.T01
Chr6 exon 20567882 20568096 20567882 ID=MsG0680031448.01.T01:exon:13058;Parent=MsG0680031448.01.T01
Chr6 exon 20570562 20570629 20570562 ID=MsG0680031448.01.T01:exon:13057;Parent=MsG0680031448.01.T01
Chr6 exon 20571251 20571323 20571251 ID=MsG0680031448.01.T01:exon:13056;Parent=MsG0680031448.01.T01
Chr6 five_prime_UTR 20571251 20571323 20571251 ID=MsG0680031448.01.T01:five_prime_utr;Parent=MsG0680031448.01.T01
Chr6 five_prime_UTR 20570619 20570629 20570619 ID=MsG0680031448.01.T01:five_prime_utr;Parent=MsG0680031448.01.T01
Chr6 CDS 20570562 20570618 20570562 ID=MsG0680031448.01.T01:cds;Parent=MsG0680031448.01.T01
Chr6 CDS 20567882 20568096 20567882 ID=MsG0680031448.01.T01:cds;Parent=MsG0680031448.01.T01
Chr6 CDS 20567353 20567632 20567353 ID=MsG0680031448.01.T01:cds;Parent=MsG0680031448.01.T01
Chr6 CDS 20567194 20567265 20567194 ID=MsG0680031448.01.T01:cds;Parent=MsG0680031448.01.T01
Chr6 CDS 20566536 20566652 20566536 ID=MsG0680031448.01.T01:cds;Parent=MsG0680031448.01.T01
Chr6 CDS 20566378 20566443 20566378 ID=MsG0680031448.01.T01:cds;Parent=MsG0680031448.01.T01
Chr6 CDS 20566170 20566286 20566170 ID=MsG0680031448.01.T01:cds;Parent=MsG0680031448.01.T01
Chr6 three_prime_UTR 20565765 20566169 20565765 ID=MsG0680031448.01.T01:three_prime_utr;Parent=MsG0680031448.01.T01
Gene Sequence

>MsG0680031448.01.T01

ATGGCCGGAAGTGTTATTCAGCAGTTATTAAGGAGGAAACTCCAATCTCATTCTCCTAATCCTTCATCTATGTCATCGATAATCACGAAGAATGATGGTGCTGGTTCTACGAGCAGCAGATCCTTTAGAGCCCTTGCATTAATTGGAGCTGGTGTCTCAGGTCTTTTGGGTTTTGCAACGACAGCATCAGCTGATGAAGCTGAGCATGGCCTGGCTGCTCCAAGCTATCCATGGCCTCATGAGGGGATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATATGCAAGTCTGTGCTTCCTGCCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTACACAGAAGCGGAGGTAAAGGCAATGGCTACTGAGATTGAGGTGGTTGATGGACCTAATGATGAGGGTGAGATGTTTACGCGTCCCGGTAAACTCAGTGACCGCTTTCCTCAGCCATATGCCAATGAATCAGCTGCTAGATTTGCTAATGGAGGAGCCTATCCTCCCGATCTAAGTCTTATCACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCTCTTCTTACTGGTTATCGTGACCCCCCTGCCGGTGTTGTGATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGAGCCATTGCCATGCCTAAAATGCTTAATGACGGTGCTGTTGAATATGAAGATGGTACCCCTGCTACCGAAGCTCAGATGGGGAAAGATGTTGTGTCATTTTTGTCTTGGGCTGCGGAACCTGAGATGGAAGAGCGAAAACTGATGGGATTTAAATGGATATTTGTACTTTCATTGGCATTACTTCAAGCTGCATACTATCGTCGTCTTCGGTGGTCTGTTCTTAAGTCTCGCAAGTTGGTTCTTGATGTTGTCAACTAA
Protein sequence

>MsG0680031448.01.T01

MAGSVIQQLLRRKLQSHSPNPSSMSSIITKNDGAGSTSSRSFRALALIGAGVSGLLGFATTASADEAEHGLAAPSYPWPHEGILSSYDHASIRRGHQVYMQVCASCHSMSLISYRDLVGVAYTEAEVKAMATEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVVIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*