AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035536.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035536.01.T01 MTR_6g023230 99.303 287 2 0 3 289 20 306 0.0 590
MsG0680035536.01.T01 MTR_6g023290 93.684 285 18 0 5 289 23 307 0.0 558
MsG0680035536.01.T01 MTR_6g023280 77.193 57 13 0 114 170 2 58 9.84e-27 99.8
MsG0680035536.01.T01 MTR_6g023270 49.107 112 34 2 5 99 36 141 6.45e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035536.01.T01 AT5G40810 88.380 284 33 0 6 289 24 307 3.17e-174 483
MsG0680035536.01.T01 AT3G27240 88.235 289 33 1 1 289 20 307 3.73e-174 483
MsG0680035536.01.T01 AT5G40810 92.308 260 20 0 30 289 1 260 7.20e-168 466

Find 98 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGGTGTCTCAGGTCTTC+TGG 0.139333 6:+107748839 MsG0680035536.01.T01:CDS
TTTATATATGAAACTGTTAT+TGG 0.165636 6:+107751828 MsG0680035536.01.T01:three_prime_UTR
TTCTGTAACTCCAACGAATT+TGG 0.201397 6:-107751466 None:intergenic
TTAAGAGCCCTTGCTTTAAT+AGG 0.244645 6:+107748816 MsG0680035536.01.T01:CDS
GAGTGTCAGAATGTTCTTAT+TGG 0.313681 6:+107751693 MsG0680035536.01.T01:three_prime_UTR
TAAAATGCATCTCACATATA+TGG 0.326001 6:-107751528 None:intergenic
ATGGATATTTGTACTTTCAT+TGG 0.329694 6:+107751289 MsG0680035536.01.T01:CDS
GCTGGTGTCTCAGGTCTTCT+GGG 0.336247 6:+107748840 MsG0680035536.01.T01:CDS
AGAATGTTCTTATTGGAAAC+TGG 0.336407 6:+107751700 MsG0680035536.01.T01:three_prime_UTR
ATGGCTCCACCAGGGAAATA+AGG 0.352039 6:-107750922 None:intergenic
TATGTGTTTGCTCTCCTAAC+TGG 0.353553 6:+107750220 MsG0680035536.01.T01:CDS
TTAGATATTTGTTAAGTGAT+TGG 0.359787 6:+107751628 MsG0680035536.01.T01:three_prime_UTR
TATTAAAGCAAGGGCTCTTA+AGG 0.362156 6:-107748814 None:intergenic
GAATTTGGCATGACGAGAAT+TGG 0.369422 6:-107751451 None:intergenic
CTACATACACTTATATAATC+TGG 0.372083 6:+107751601 MsG0680035536.01.T01:three_prime_UTR
TAGATATTTGTTAAGTGATT+GGG 0.373019 6:+107751629 MsG0680035536.01.T01:three_prime_UTR
AACATCTCACCCTCATCATT+GGG 0.377350 6:-107749981 None:intergenic
GTCTCAAAGAAAGATGGTTC+TGG 0.397685 6:+107748774 MsG0680035536.01.T01:CDS
AAAGCGATCACTGAGTTTAC+CGG 0.403522 6:-107750012 None:intergenic
TTAATAGGAGCTGGTGTCTC+AGG 0.408185 6:+107748831 MsG0680035536.01.T01:CDS
AAAGATGGTTCTGGCTCTAC+TGG 0.410976 6:+107748783 MsG0680035536.01.T01:CDS
AAACATCTCACCCTCATCAT+TGG 0.411590 6:-107749982 None:intergenic
TTTGATATCATACCGTGATT+TGG 0.414012 6:+107749893 MsG0680035536.01.T01:CDS
CATTACAATCCTTATTTCCC+TGG 0.414300 6:+107750913 MsG0680035536.01.T01:CDS
GCAGCTGATTCATTTGCATA+TGG 0.415455 6:-107750041 None:intergenic
GCGCCATCATTAAGCATCTT+AGG 0.416554 6:-107750952 None:intergenic
AGTACCTGAGCTTCGGTAGC+AGG 0.443562 6:-107750997 None:intergenic
CCGCTTATTATCGTCGCCTT+CGG 0.451928 6:+107751324 MsG0680035536.01.T01:CDS
TGAGATGGAAGAGAGAAAAC+TGG 0.457119 6:+107751173 MsG0680035536.01.T01:CDS
TCAGCTGCTAGGTTTGCTAA+TGG 0.483837 6:+107750056 MsG0680035536.01.T01:CDS
GCCCTTGCTTTAATAGGAGC+TGG 0.484530 6:+107748822 MsG0680035536.01.T01:CDS
ACTTGCAGATGGGATTCAAA+TGG 0.499370 6:+107751270 MsG0680035536.01.T01:intron
AATAGACATGTTTGAGAAGA+GGG 0.499580 6:-107751559 None:intergenic
GGCATAGCAATGGCTCCACC+AGG 0.499810 6:-107750931 None:intergenic
ATGTAAAAGTACCTGAGCTT+CGG 0.504447 6:-107751004 None:intergenic
TATCAAAGACATGGAATGGC+AGG 0.507429 6:-107749877 None:intergenic
TCTCGTCATGCCAAATTCGT+TGG 0.509698 6:+107751456 MsG0680035536.01.T01:three_prime_UTR
TTGGAAATAAGACTTAGATC+AGG 0.514224 6:-107750092 None:intergenic
TTGGGCAGCGGAACCTGAGA+TGG 0.517204 6:+107751158 MsG0680035536.01.T01:CDS
AGAAGAAGAGGTAAAGGCTA+TGG 0.524696 6:+107749932 MsG0680035536.01.T01:CDS
GTACCTGAGCTTCGGTAGCA+GGG 0.529146 6:-107750996 None:intergenic
AGGATGCCCTCGTGAGGCCA+TGG 0.530626 6:-107748921 None:intergenic
GGCTATGGCAGCTGAGATTG+AGG 0.530766 6:+107749947 MsG0680035536.01.T01:CDS
ATATAAGTGTATGTAGGTCC+TGG 0.537436 6:-107751594 None:intergenic
ATGATATCAAAGACATGGAA+TGG 0.537539 6:-107749881 None:intergenic
GCTGAGATTGAGGTGGAAGA+TGG 0.539723 6:+107749957 MsG0680035536.01.T01:CDS
GATTCATTTGCATATGGCTG+AGG 0.541130 6:-107750035 None:intergenic
TACCCCTGCTACCGAAGCTC+AGG 0.543312 6:+107750993 MsG0680035536.01.T01:CDS
ATAATAATGTAGATCAGAGA+AGG 0.546231 6:+107750886 MsG0680035536.01.T01:intron
TCGATTGTCTCAAAGAAAGA+TGG 0.548734 6:+107748768 MsG0680035536.01.T01:CDS
TTACACAGAAGAAGAGGTAA+AGG 0.552168 6:+107749926 MsG0680035536.01.T01:CDS
GAATATACCGAAATACCAGC+AGG 0.552545 6:-107750256 None:intergenic
TACAATCCTTATTTCCCTGG+TGG 0.554688 6:+107750916 MsG0680035536.01.T01:CDS
AAGCGATCACTGAGTTTACC+GGG 0.554889 6:-107750011 None:intergenic
TCGCATCTCCACACTATCCA+TGG 0.559094 6:+107748904 MsG0680035536.01.T01:CDS
TGTTCTTAAGTCTCGCAAGT+TGG 0.563450 6:+107751352 MsG0680035536.01.T01:CDS
AAGACTTAGATCAGGAGGAT+AGG 0.563590 6:-107750084 None:intergenic
CAGATTATATAAGTGTATGT+AGG 0.566337 6:-107751600 None:intergenic
ATGCAAATGAATCAGCTGCT+AGG 0.576296 6:+107750045 MsG0680035536.01.T01:CDS
CACCAGCTCCTATTAAAGCA+AGG 0.578592 6:-107748824 None:intergenic
GGTGAGATGTTTACACGCCC+CGG 0.579989 6:+107749993 MsG0680035536.01.T01:CDS
CTTATTATCGTCGCCTTCGG+TGG 0.580120 6:+107751327 MsG0680035536.01.T01:CDS
AAATAGACATGTTTGAGAAG+AGG 0.596894 6:-107751560 None:intergenic
TCAGCTGATGAAGCTGAGCA+TGG 0.598104 6:+107748879 MsG0680035536.01.T01:CDS
GTGTATGTAGGTCCTGGAGG+AGG 0.598701 6:-107751588 None:intergenic
ATGCCTAAGATGCTTAATGA+TGG 0.603469 6:+107750949 MsG0680035536.01.T01:CDS
ACCAGCTCCTATTAAAGCAA+GGG 0.604841 6:-107748823 None:intergenic
TGTTGCTTACACAGAAGAAG+AGG 0.612813 6:+107749920 MsG0680035536.01.T01:CDS
GAAATAAGACTTAGATCAGG+AGG 0.617314 6:-107750089 None:intergenic
TCGTGAGGCCATGGATAGTG+TGG 0.617512 6:-107748912 None:intergenic
ATATCATACCGTGATTTGGT+TGG 0.618625 6:+107749897 MsG0680035536.01.T01:CDS
GAGACAATCGATGATACAGA+AGG 0.624690 6:-107748756 None:intergenic
TACCTGAGCTTCGGTAGCAG+GGG 0.625058 6:-107750995 None:intergenic
GGCGCTGTTGAATATGAAGA+TGG 0.625884 6:+107750970 MsG0680035536.01.T01:CDS
ACGGTATGATATCAAAGACA+TGG 0.629932 6:-107749886 None:intergenic
ACACTATCCATGGCCTCACG+AGG 0.631293 6:+107748914 MsG0680035536.01.T01:CDS
AAGCATCTTAGGCATAGCAA+TGG 0.637418 6:-107750941 None:intergenic
GGAAGATGGCCCCAATGATG+AGG 0.644119 6:+107749971 MsG0680035536.01.T01:CDS
GCTGCTAGGTTTGCTAATGG+AGG 0.646946 6:+107750059 MsG0680035536.01.T01:CDS
AATATACCGAAATACCAGCA+GGG 0.651584 6:-107750255 None:intergenic
ATATACCGAAATACCAGCAG+GGG 0.655558 6:-107750254 None:intergenic
AAGCAACACCAACCAAATCA+CGG 0.657890 6:-107749905 None:intergenic
ATGGATAGTGTGGAGATGCG+AGG 0.659382 6:-107748902 None:intergenic
GAAGATGGCCCCAATGATGA+GGG 0.664245 6:+107749972 MsG0680035536.01.T01:CDS
ACATCTCACCCTCATCATTG+GGG 0.664508 6:-107749980 None:intergenic
CACTATCCATGGCCTCACGA+GGG 0.665959 6:+107748915 MsG0680035536.01.T01:CDS
ACTTAAGAACAGACCACCGA+AGG 0.669689 6:-107751340 None:intergenic
GAACTGAGGATGCCCTCGTG+AGG 0.671560 6:-107748927 None:intergenic
TAAGTGTATGTAGGTCCTGG+AGG 0.685220 6:-107751591 None:intergenic
GTGTATAAACTTGATGACCA+CGG 0.686663 6:-107749842 None:intergenic
GCATAGCAATGGCTCCACCA+GGG 0.693592 6:-107750930 None:intergenic
CCGAAGGCGACGATAATAAG+CGG 0.693727 6:-107751324 None:intergenic
TATACCGAAATACCAGCAGG+GGG 0.699409 6:-107750253 None:intergenic
AAGCGTGATCATATGAACTG+AGG 0.699683 6:-107748941 None:intergenic
TATGGCAGCTGAGATTGAGG+TGG 0.700807 6:+107749950 MsG0680035536.01.T01:CDS
AGCGATCACTGAGTTTACCG+GGG 0.742025 6:-107750010 None:intergenic
TGTATGAACAGGATTCGCCG+TGG 0.760844 6:+107749825 MsG0680035536.01.T01:intron
ATACCGAAATACCAGCAGGG+GGG 0.810875 6:-107750252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTATTTATAGAAATAAA+AGG - Chr6:107749659-107749678 None:intergenic 10.0%
!! ACAACATAATAAAAATGAAT+TGG - Chr6:107751742-107751761 None:intergenic 15.0%
!! ATTTATAAAAAGATTACTGT+TGG + Chr6:107751417-107751436 MsG0680035536.01.T01:three_prime_UTR 15.0%
!! TTTATATATGAAACTGTTAT+TGG + Chr6:107751828-107751847 MsG0680035536.01.T01:three_prime_UTR 15.0%
!! AAATAAAAAACAAAGCTTGA+AGG - Chr6:107751401-107751420 None:intergenic 20.0%
!! AGAATAAAACAAAGCAATAA+AGG - Chr6:107749692-107749711 None:intergenic 20.0%
!! AGTTCAGATTAAATATATGA+TGG - Chr6:107749751-107749770 None:intergenic 20.0%
!! ATTTAAAAGAAAATCCTCTA+TGG - Chr6:107750520-107750539 None:intergenic 20.0%
!! ATTTGATGTTTATGTAATCT+GGG + Chr6:107749712-107749731 MsG0680035536.01.T01:intron 20.0%
!! GCTGAAAAAAATTAAAACTA+GGG - Chr6:107749128-107749147 None:intergenic 20.0%
!! TATCTTCAGTAAAGAAAAAA+GGG + Chr6:107751664-107751683 MsG0680035536.01.T01:three_prime_UTR 20.0%
!! TATTTGATGTTTATGTAATC+TGG + Chr6:107749711-107749730 MsG0680035536.01.T01:intron 20.0%
!! TTATCTTCAGTAAAGAAAAA+AGG + Chr6:107751663-107751682 MsG0680035536.01.T01:three_prime_UTR 20.0%
!! TTCAATATAATACTTTCATG+TGG + Chr6:107750577-107750596 MsG0680035536.01.T01:intron 20.0%
!! TTCATACAATATAAAACCTA+AGG - Chr6:107750146-107750165 None:intergenic 20.0%
!!! CATTTAAAAGCACAATTTTT+TGG - Chr6:107750387-107750406 None:intergenic 20.0%
!!! CGCATTAATATTTTACAAAT+TGG - Chr6:107750472-107750491 None:intergenic 20.0%
!!! CTGTATTTAGTCTTAAAAAA+AGG - Chr6:107750291-107750310 None:intergenic 20.0%
!!! TAGATATTTGTTAAGTGATT+GGG + Chr6:107751629-107751648 MsG0680035536.01.T01:three_prime_UTR 20.0%
!!! TTAGATATTTGTTAAGTGAT+TGG + Chr6:107751628-107751647 MsG0680035536.01.T01:three_prime_UTR 20.0%
! AGTAAAGAAAAAAGGGAAAA+GGG + Chr6:107751671-107751690 MsG0680035536.01.T01:three_prime_UTR 25.0%
! ATAATAATGTAGATCAGAGA+AGG + Chr6:107750886-107750905 MsG0680035536.01.T01:intron 25.0%
! ATATAATACTTTCATGTGGA+TGG + Chr6:107750581-107750600 MsG0680035536.01.T01:intron 25.0%
! ATCTAACATGGTTAAAATCT+TGG + Chr6:107749199-107749218 MsG0680035536.01.T01:intron 25.0%
! ATGGATATTTGTACTTTCAT+TGG + Chr6:107751289-107751308 MsG0680035536.01.T01:CDS 25.0%
! ATTGTTGAGTAAAAAGAGAA+AGG + Chr6:107749534-107749553 MsG0680035536.01.T01:intron 25.0%
! CAGATTATATAAGTGTATGT+AGG - Chr6:107751603-107751622 None:intergenic 25.0%
! CTACATACACTTATATAATC+TGG + Chr6:107751601-107751620 MsG0680035536.01.T01:three_prime_UTR 25.0%
! GGCTGAAAAAAATTAAAACT+AGG - Chr6:107749129-107749148 None:intergenic 25.0%
! GTACGTTAAAGCAAAATTAA+AGG - Chr6:107749011-107749030 None:intergenic 25.0%
! TAAAATGCATCTCACATATA+TGG - Chr6:107751531-107751550 None:intergenic 25.0%
! TCAGATTAAATATATGATGG+AGG - Chr6:107749748-107749767 None:intergenic 25.0%
! TTAAGAGAAATAGAGAAAGT+GGG + Chr6:107749484-107749503 MsG0680035536.01.T01:intron 25.0%
!!! GTTTTAATTTTTTTCAGCCT+TGG + Chr6:107749130-107749149 MsG0680035536.01.T01:intron 25.0%
!!! TAAGTGATTGGGTTTATTTT+TGG + Chr6:107751640-107751659 MsG0680035536.01.T01:three_prime_UTR 25.0%
!!! TGTTCTTGAACTTTTGTTTA+TGG + Chr6:107750852-107750871 MsG0680035536.01.T01:intron 25.0%
!!! TTTAATTTGTTGTTGCAGAT+GGG + Chr6:107751111-107751130 MsG0680035536.01.T01:intron 25.0%
AAATAGACATGTTTGAGAAG+AGG - Chr6:107751563-107751582 None:intergenic 30.0%
AAATCCTCTATGGTATCAAA+AGG - Chr6:107750510-107750529 None:intergenic 30.0%
AAGAATGCAAGTTACTGTAA+TGG - Chr6:107750314-107750333 None:intergenic 30.0%
AATAGACATGTTTGAGAAGA+GGG - Chr6:107751562-107751581 None:intergenic 30.0%
AGAATGTTCTTATTGGAAAC+TGG + Chr6:107751700-107751719 MsG0680035536.01.T01:three_prime_UTR 30.0%
AGAGAACATTAGTTCCTTTA+AGG + Chr6:107749589-107749608 MsG0680035536.01.T01:intron 30.0%
ATGATATCAAAGACATGGAA+TGG - Chr6:107749884-107749903 None:intergenic 30.0%
CAAAAGTTCAAGAACAGTAT+TGG - Chr6:107750848-107750867 None:intergenic 30.0%
CAGTAAAGAAAAAAGGGAAA+AGG + Chr6:107751670-107751689 MsG0680035536.01.T01:three_prime_UTR 30.0%
CTGATAGAAGACGAAAATAA+AGG - Chr6:107751206-107751225 None:intergenic 30.0%
GAAACATTAATATTGTGTGC+TGG - Chr6:107750624-107750643 None:intergenic 30.0%
GCAGAAAATTGACATTACTT+TGG - Chr6:107750114-107750133 None:intergenic 30.0%
GTTAAGAGAAATAGAGAAAG+TGG + Chr6:107749483-107749502 MsG0680035536.01.T01:intron 30.0%
TTGGAAATAAGACTTAGATC+AGG - Chr6:107750095-107750114 None:intergenic 30.0%
TTGTCAATCATGCACATATA+TGG + Chr6:107750674-107750693 MsG0680035536.01.T01:intron 30.0%
TTTGATATCATACCGTGATT+TGG + Chr6:107749893-107749912 MsG0680035536.01.T01:CDS 30.0%
! AGTTTTTCCTTCGTTTCTTT+TGG + Chr6:107748979-107748998 MsG0680035536.01.T01:intron 30.0%
! ATAGGACTCATCCTATTTTA+AGG + Chr6:107749322-107749341 MsG0680035536.01.T01:intron 30.0%
! ATTTTACAAATTGGTGTGCA+GGG - Chr6:107750463-107750482 None:intergenic 30.0%
! CAAAACCATGAAAGCATAAT+AGG - Chr6:107749169-107749188 None:intergenic 30.0%
! GTTTTTCCTTCGTTTCTTTT+GGG + Chr6:107748980-107748999 MsG0680035536.01.T01:intron 30.0%
! TATTTTACAAATTGGTGTGC+AGG - Chr6:107750464-107750483 None:intergenic 30.0%
! TTGTGCTTTTAAATGTTGTG+TGG + Chr6:107750392-107750411 MsG0680035536.01.T01:intron 30.0%
!! AAAAAGAGAAAGGTATCAAG+AGG + Chr6:107749544-107749563 MsG0680035536.01.T01:intron 30.0%
!! AAAAGAGAAAGGTATCAAGA+GGG + Chr6:107749545-107749564 MsG0680035536.01.T01:intron 30.0%
!! ATTATGCTTTCATGGTTTTG+AGG + Chr6:107749169-107749188 MsG0680035536.01.T01:intron 30.0%
!! CTTTAATTTGTTGTTGCAGA+TGG + Chr6:107751110-107751129 MsG0680035536.01.T01:intron 30.0%
!! TTAATTTGTTGTTGCAGATG+GGG + Chr6:107751112-107751131 MsG0680035536.01.T01:intron 30.0%
!! TTAGCTGATTTTGTATGAAC+AGG + Chr6:107749814-107749833 MsG0680035536.01.T01:intron 30.0%
!!! ATGTTGTGTCATTTTTGTCT+TGG + Chr6:107751139-107751158 MsG0680035536.01.T01:CDS 30.0%
!!! CTATTTTAAGGCTTTCTTCT+GGG + Chr6:107749334-107749353 MsG0680035536.01.T01:intron 30.0%
!!! TGTTGTGTCATTTTTGTCTT+GGG + Chr6:107751140-107751159 MsG0680035536.01.T01:CDS 30.0%
AATATACCGAAATACCAGCA+GGG - Chr6:107750258-107750277 None:intergenic 35.0%
ACATCAGTTGTATAGGTTCA+TGG + Chr6:107749446-107749465 MsG0680035536.01.T01:intron 35.0%
ACGGTATGATATCAAAGACA+TGG - Chr6:107749889-107749908 None:intergenic 35.0%
AGTTAGCACATCAGTTGTAT+AGG + Chr6:107749439-107749458 MsG0680035536.01.T01:intron 35.0%
ATATAAGTGTATGTAGGTCC+TGG - Chr6:107751597-107751616 None:intergenic 35.0%
ATGCCTAAGATGCTTAATGA+TGG + Chr6:107750949-107750968 MsG0680035536.01.T01:CDS 35.0%
ATTCTTCAGAAGTTGTCATG+TGG + Chr6:107750328-107750347 MsG0680035536.01.T01:intron 35.0%
CACTTATGATCACAAATGCA+AGG - Chr6:107749050-107749069 None:intergenic 35.0%
CCAGAAGAAAGCCTTAAAAT+AGG - Chr6:107749336-107749355 None:intergenic 35.0%
CTAGCAATTATCGCAATACA+TGG - Chr6:107749259-107749278 None:intergenic 35.0%
CTTGCATTTGTGATCATAAG+TGG + Chr6:107749048-107749067 MsG0680035536.01.T01:intron 35.0%
GAAATAAGACTTAGATCAGG+AGG - Chr6:107750092-107750111 None:intergenic 35.0%
GAGTGTCAGAATGTTCTTAT+TGG + Chr6:107751693-107751712 MsG0680035536.01.T01:three_prime_UTR 35.0%
GCATTTATAGATCCTGTGAT+AGG + Chr6:107749304-107749323 MsG0680035536.01.T01:intron 35.0%
GTCTTCCTATTATGCTTTCA+TGG + Chr6:107749161-107749180 MsG0680035536.01.T01:intron 35.0%
TATTAAAGCAAGGGCTCTTA+AGG - Chr6:107748817-107748836 None:intergenic 35.0%
TCGATTGTCTCAAAGAAAGA+TGG + Chr6:107748768-107748787 MsG0680035536.01.T01:CDS 35.0%
TGAGACTTGACAAGAATACA+AGG - Chr6:107750740-107750759 None:intergenic 35.0%
TGGTTGTCAAAGTCAACTAT+AGG + Chr6:107749068-107749087 MsG0680035536.01.T01:intron 35.0%
TTAAGAGCCCTTGCTTTAAT+AGG + Chr6:107748816-107748835 MsG0680035536.01.T01:CDS 35.0%
TTACACAGAAGAAGAGGTAA+AGG + Chr6:107749926-107749945 MsG0680035536.01.T01:CDS 35.0%
TTCTGTAACTCCAACGAATT+TGG - Chr6:107751469-107751488 None:intergenic 35.0%
TTGACAAGAATACAAGGTTG+AGG - Chr6:107750734-107750753 None:intergenic 35.0%
TTGTACTGAATACTGAGACA+AGG - Chr6:107750793-107750812 None:intergenic 35.0%
TTTCTGCTAGTAACTTCCTT+AGG + Chr6:107750127-107750146 MsG0680035536.01.T01:intron 35.0%
! ATAGCCTTTTGATACCATAG+AGG + Chr6:107750503-107750522 MsG0680035536.01.T01:intron 35.0%
! CATTACAATCCTTATTTCCC+TGG + Chr6:107750913-107750932 MsG0680035536.01.T01:CDS 35.0%
! GGTACTTTTACATGTTGATG+AGG + Chr6:107751014-107751033 MsG0680035536.01.T01:intron 35.0%
! GTGTATAAACTTGATGACCA+CGG - Chr6:107749845-107749864 None:intergenic 35.0%
!! ATATCATACCGTGATTTGGT+TGG + Chr6:107749897-107749916 MsG0680035536.01.T01:CDS 35.0%
!! ATGTAAAAGTACCTGAGCTT+CGG - Chr6:107751007-107751026 None:intergenic 35.0%
!!! CCTATTTTAAGGCTTTCTTC+TGG + Chr6:107749333-107749352 MsG0680035536.01.T01:intron 35.0%
AAACATCTCACCCTCATCAT+TGG - Chr6:107749985-107750004 None:intergenic 40.0%
AAAGCGATCACTGAGTTTAC+CGG - Chr6:107750015-107750034 None:intergenic 40.0%
AAATTGCTTGACCACCTGAT+GGG + Chr6:107750351-107750370 MsG0680035536.01.T01:intron 40.0%
AACATCTCACCCTCATCATT+GGG - Chr6:107749984-107750003 None:intergenic 40.0%
AAGACTTAGATCAGGAGGAT+AGG - Chr6:107750087-107750106 None:intergenic 40.0%
AAGCAACACCAACCAAATCA+CGG - Chr6:107749908-107749927 None:intergenic 40.0%
AAGCATCTTAGGCATAGCAA+TGG - Chr6:107750944-107750963 None:intergenic 40.0%
AAGCGTGATCATATGAACTG+AGG - Chr6:107748944-107748963 None:intergenic 40.0%
AATAGGATGAGTCCTATCAC+AGG - Chr6:107749319-107749338 None:intergenic 40.0%
ACCAGCTCCTATTAAAGCAA+GGG - Chr6:107748826-107748845 None:intergenic 40.0%
ACTTGCAGATGGGATTCAAA+TGG + Chr6:107751270-107751289 MsG0680035536.01.T01:intron 40.0%
AGAAGAAGAGGTAAAGGCTA+TGG + Chr6:107749932-107749951 MsG0680035536.01.T01:CDS 40.0%
AGTGGGAAATGAATTGTGCA+AGG + Chr6:107749501-107749520 MsG0680035536.01.T01:intron 40.0%
AGTTGTATAGGTTCATGGTG+TGG + Chr6:107749451-107749470 MsG0680035536.01.T01:intron 40.0%
ATACTTTCATGTGGATGGCT+TGG + Chr6:107750586-107750605 MsG0680035536.01.T01:intron 40.0%
ATATACCGAAATACCAGCAG+GGG - Chr6:107750257-107750276 None:intergenic 40.0%
ATGCAAATGAATCAGCTGCT+AGG + Chr6:107750045-107750064 MsG0680035536.01.T01:CDS 40.0%
CATAGAGCTAAGCTCCTTAA+AGG - Chr6:107749606-107749625 None:intergenic 40.0%
GAATATACCGAAATACCAGC+AGG - Chr6:107750259-107750278 None:intergenic 40.0%
GAATTGCCCAAAAGAAACGA+AGG - Chr6:107748989-107749008 None:intergenic 40.0%
GAATTTGGCATGACGAGAAT+TGG - Chr6:107751454-107751473 None:intergenic 40.0%
GAGACAATCGATGATACAGA+AGG - Chr6:107748759-107748778 None:intergenic 40.0%
GATTCATTTGCATATGGCTG+AGG - Chr6:107750038-107750057 None:intergenic 40.0%
GTCTCAAAGAAAGATGGTTC+TGG + Chr6:107748774-107748793 MsG0680035536.01.T01:CDS 40.0%
TAGGAAGACTAGATTCTCCA+AGG - Chr6:107749150-107749169 None:intergenic 40.0%
TATCAAAGACATGGAATGGC+AGG - Chr6:107749880-107749899 None:intergenic 40.0%
TATGTGTTTGCTCTCCTAAC+TGG + Chr6:107750220-107750239 MsG0680035536.01.T01:CDS 40.0%
TGAGATGGAAGAGAGAAAAC+TGG + Chr6:107751173-107751192 MsG0680035536.01.T01:CDS 40.0%
TGAGGTGACATGATCTAACA+TGG + Chr6:107749187-107749206 MsG0680035536.01.T01:intron 40.0%
TGTTCTTAAGTCTCGCAAGT+TGG + Chr6:107751352-107751371 MsG0680035536.01.T01:CDS 40.0%
! AGTTTTCTCTCTTCCATCTC+AGG - Chr6:107751174-107751193 None:intergenic 40.0%
! GCAGCTGATTCATTTGCATA+TGG - Chr6:107750044-107750063 None:intergenic 40.0%
! TACAATCCTTATTTCCCTGG+TGG + Chr6:107750916-107750935 MsG0680035536.01.T01:CDS 40.0%
! TCTATTTTGTTACCTCCTCC+AGG + Chr6:107751576-107751595 MsG0680035536.01.T01:three_prime_UTR 40.0%
! TGTTGCTTACACAGAAGAAG+AGG + Chr6:107749920-107749939 MsG0680035536.01.T01:CDS 40.0%
! TGTTTGCCCTTTGTGTTTTC+AGG + Chr6:107750177-107750196 MsG0680035536.01.T01:intron 40.0%
! TTCTTGTTTGCTCTACACCT+CGG + Chr6:107749380-107749399 MsG0680035536.01.T01:intron 40.0%
!! AGTATTGGCACAAGGATACA+AGG - Chr6:107750833-107750852 None:intergenic 40.0%
!! CTTTAAGGAGCTTAGCTCTA+TGG + Chr6:107749604-107749623 MsG0680035536.01.T01:intron 40.0%
!! TCAAGAACAGTATTGGCACA+AGG - Chr6:107750841-107750860 None:intergenic 40.0%
AAGCGATCACTGAGTTTACC+GGG - Chr6:107750014-107750033 None:intergenic 45.0%
ACAAATTGGTGTGCAGGGAA+AGG - Chr6:107750458-107750477 None:intergenic 45.0%
ACACTGCTACTACTTGCAGA+TGG + Chr6:107751259-107751278 MsG0680035536.01.T01:intron 45.0%
ACATCTCACCCTCATCATTG+GGG - Chr6:107749983-107750002 None:intergenic 45.0%
ACTTAAGAACAGACCACCGA+AGG - Chr6:107751343-107751362 None:intergenic 45.0%
AGGGATCATGCAGTCTGTTA+GGG + Chr6:107749564-107749583 MsG0680035536.01.T01:intron 45.0%
CAAATTGGTGTGCAGGGAAA+GGG - Chr6:107750457-107750476 None:intergenic 45.0%
CACCAGCTCCTATTAAAGCA+AGG - Chr6:107748827-107748846 None:intergenic 45.0%
CACTGCTACTACTTGCAGAT+GGG + Chr6:107751260-107751279 MsG0680035536.01.T01:intron 45.0%
GAAATTGCTTGACCACCTGA+TGG + Chr6:107750350-107750369 MsG0680035536.01.T01:intron 45.0%
GACGAGCCTGAAAACACAAA+GGG - Chr6:107750186-107750205 None:intergenic 45.0%
GCGCCATCATTAAGCATCTT+AGG - Chr6:107750955-107750974 None:intergenic 45.0%
GGCGCTGTTGAATATGAAGA+TGG + Chr6:107750970-107750989 MsG0680035536.01.T01:CDS 45.0%
GTATAGGTTCATGGTGTGGA+GGG + Chr6:107749455-107749474 MsG0680035536.01.T01:intron 45.0%
TAAGTGTATGTAGGTCCTGG+AGG - Chr6:107751594-107751613 None:intergenic 45.0%
TATACCGAAATACCAGCAGG+GGG - Chr6:107750256-107750275 None:intergenic 45.0%
TCACGCTTCGTAAGTTTGAC+TGG + Chr6:107748956-107748975 MsG0680035536.01.T01:intron 45.0%
TCTCGTCATGCCAAATTCGT+TGG + Chr6:107751456-107751475 MsG0680035536.01.T01:three_prime_UTR 45.0%
TGACGAGCCTGAAAACACAA+AGG - Chr6:107750187-107750206 None:intergenic 45.0%
TGTATAGGTTCATGGTGTGG+AGG + Chr6:107749454-107749473 MsG0680035536.01.T01:intron 45.0%
TTAAGGCTTTCTTCTGGGTC+AGG + Chr6:107749339-107749358 MsG0680035536.01.T01:intron 45.0%
TTAATAGGAGCTGGTGTCTC+AGG + Chr6:107748831-107748850 MsG0680035536.01.T01:CDS 45.0%
!! AAAGATGGTTCTGGCTCTAC+TGG + Chr6:107748783-107748802 MsG0680035536.01.T01:CDS 45.0%
!! TCAGCTGCTAGGTTTGCTAA+TGG + Chr6:107750056-107750075 MsG0680035536.01.T01:CDS 45.0%
!! TGTTTTCAGGCTCGTCACAA+TGG + Chr6:107750190-107750209 MsG0680035536.01.T01:intron 45.0%
!!! GTCATTTTTGTCTTGGGCAG+CGG + Chr6:107751146-107751165 MsG0680035536.01.T01:CDS 45.0%
AGCGATCACTGAGTTTACCG+GGG - Chr6:107750013-107750032 None:intergenic 50.0%
AGGAGCCTGAATGAGAAGGT+GGG + Chr6:107749405-107749424 MsG0680035536.01.T01:intron 50.0%
ATACCGAAATACCAGCAGGG+GGG - Chr6:107750255-107750274 None:intergenic 50.0%
ATGGATAGTGTGGAGATGCG+AGG - Chr6:107748905-107748924 None:intergenic 50.0%
ATGGCTCCACCAGGGAAATA+AGG - Chr6:107750925-107750944 None:intergenic 50.0%
CCGAAGGCGACGATAATAAG+CGG - Chr6:107751327-107751346 None:intergenic 50.0%
CCGCTTATTATCGTCGCCTT+CGG + Chr6:107751324-107751343 MsG0680035536.01.T01:CDS 50.0%
CTTATTATCGTCGCCTTCGG+TGG + Chr6:107751327-107751346 MsG0680035536.01.T01:CDS 50.0%
GAAGATGGCCCCAATGATGA+GGG + Chr6:107749972-107749991 MsG0680035536.01.T01:CDS 50.0%
GAGGGATCATGCAGTCTGTT+AGG + Chr6:107749563-107749582 MsG0680035536.01.T01:intron 50.0%
GCCCTTGCTTTAATAGGAGC+TGG + Chr6:107748822-107748841 MsG0680035536.01.T01:CDS 50.0%
GCTGAGATTGAGGTGGAAGA+TGG + Chr6:107749957-107749976 MsG0680035536.01.T01:CDS 50.0%
GGATAGGAGCCTGAATGAGA+AGG + Chr6:107749401-107749420 MsG0680035536.01.T01:intron 50.0%
GGGATCATGCAGTCTGTTAG+GGG + Chr6:107749565-107749584 MsG0680035536.01.T01:intron 50.0%
GTTTGCTCTACACCTCGGAT+AGG + Chr6:107749385-107749404 MsG0680035536.01.T01:intron 50.0%
TAGGAGCCTGAATGAGAAGG+TGG + Chr6:107749404-107749423 MsG0680035536.01.T01:intron 50.0%
TATGGCAGCTGAGATTGAGG+TGG + Chr6:107749950-107749969 MsG0680035536.01.T01:CDS 50.0%
TCAGCTGATGAAGCTGAGCA+TGG + Chr6:107748879-107748898 MsG0680035536.01.T01:CDS 50.0%
TCGCATCTCCACACTATCCA+TGG + Chr6:107748904-107748923 MsG0680035536.01.T01:CDS 50.0%
TGTATGAACAGGATTCGCCG+TGG + Chr6:107749825-107749844 MsG0680035536.01.T01:intron 50.0%
TTGAGCCCACCTTCTCATTC+AGG - Chr6:107749413-107749432 None:intergenic 50.0%
TTGGTTCCAAACCACCCATC+AGG - Chr6:107750368-107750387 None:intergenic 50.0%
!! GCTGCTAGGTTTGCTAATGG+AGG + Chr6:107750059-107750078 MsG0680035536.01.T01:CDS 50.0%
AAATACCAGCAGGGGGGTCA+CGG - Chr6:107750249-107750268 None:intergenic 55.0%
ACACTATCCATGGCCTCACG+AGG + Chr6:107748914-107748933 MsG0680035536.01.T01:CDS 55.0%
AGCTGGTGTCTCAGGTCTTC+TGG + Chr6:107748839-107748858 MsG0680035536.01.T01:CDS 55.0%
AGTACCTGAGCTTCGGTAGC+AGG - Chr6:107751000-107751019 None:intergenic 55.0%
CACTATCCATGGCCTCACGA+GGG + Chr6:107748915-107748934 MsG0680035536.01.T01:CDS 55.0%
CTCATTCAGGCTCCTATCCG+AGG - Chr6:107749400-107749419 None:intergenic 55.0%
GCATAGCAATGGCTCCACCA+GGG - Chr6:107750933-107750952 None:intergenic 55.0%
GCTGGTGTCTCAGGTCTTCT+GGG + Chr6:107748840-107748859 MsG0680035536.01.T01:CDS 55.0%
GGAAGATGGCCCCAATGATG+AGG + Chr6:107749971-107749990 MsG0680035536.01.T01:CDS 55.0%
GGCTATGGCAGCTGAGATTG+AGG + Chr6:107749947-107749966 MsG0680035536.01.T01:CDS 55.0%
GGTGAGATGTTTACACGCCC+CGG + Chr6:107749993-107750012 MsG0680035536.01.T01:CDS 55.0%
GTACCTGAGCTTCGGTAGCA+GGG - Chr6:107750999-107751018 None:intergenic 55.0%
GTGTATGTAGGTCCTGGAGG+AGG - Chr6:107751591-107751610 None:intergenic 55.0%
GTTCCAAACCACCCATCAGG+TGG - Chr6:107750365-107750384 None:intergenic 55.0%
TACCTGAGCTTCGGTAGCAG+GGG - Chr6:107750998-107751017 None:intergenic 55.0%
TCGTGAGGCCATGGATAGTG+TGG - Chr6:107748915-107748934 None:intergenic 55.0%
TGACCCCCCTGCTGGTATTT+CGG + Chr6:107750249-107750268 MsG0680035536.01.T01:CDS 55.0%
TTGCTTGACCACCTGATGGG+TGG + Chr6:107750354-107750373 MsG0680035536.01.T01:intron 55.0%
! TGACCACCTGATGGGTGGTT+TGG + Chr6:107750359-107750378 MsG0680035536.01.T01:intron 55.0%
GAACTGAGGATGCCCTCGTG+AGG - Chr6:107748930-107748949 None:intergenic 60.0%
GGCATAGCAATGGCTCCACC+AGG - Chr6:107750934-107750953 None:intergenic 60.0%
GGGGGTCACGGTAACCAGTT+AGG - Chr6:107750237-107750256 None:intergenic 60.0%
TACCCCTGCTACCGAAGCTC+AGG + Chr6:107750993-107751012 MsG0680035536.01.T01:CDS 60.0%
TTGGGCAGCGGAACCTGAGA+TGG + Chr6:107751158-107751177 MsG0680035536.01.T01:CDS 60.0%
AGGATGCCCTCGTGAGGCCA+TGG - Chr6:107748924-107748943 None:intergenic 65.0%
GGTTACCGTGACCCCCCTGC+TGG + Chr6:107750241-107750260 MsG0680035536.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 107748747 107751851 107748747 ID=MsG0680035536.01;Name=MsG0680035536.01
Chr6 mRNA 107748747 107751851 107748747 ID=MsG0680035536.01.T01;Parent=MsG0680035536.01;Name=MsG0680035536.01.T01;_AED=0.47;_eAED=0.47;_QI=0|1|0.83|1|1|1|6|457|289
Chr6 exon 107748747 107748964 107748747 ID=MsG0680035536.01.T01:exon:21889;Parent=MsG0680035536.01.T01
Chr6 exon 107749836 107750115 107749836 ID=MsG0680035536.01.T01:exon:21890;Parent=MsG0680035536.01.T01
Chr6 exon 107750199 107750270 107750199 ID=MsG0680035536.01.T01:exon:21891;Parent=MsG0680035536.01.T01
Chr6 exon 107750898 107751014 107750898 ID=MsG0680035536.01.T01:exon:21892;Parent=MsG0680035536.01.T01
Chr6 exon 107751129 107751194 107751129 ID=MsG0680035536.01.T01:exon:21893;Parent=MsG0680035536.01.T01
Chr6 exon 107751278 107751851 107751278 ID=MsG0680035536.01.T01:exon:21894;Parent=MsG0680035536.01.T01
Chr6 CDS 107748747 107748964 107748747 ID=MsG0680035536.01.T01:cds;Parent=MsG0680035536.01.T01
Chr6 CDS 107749836 107750115 107749836 ID=MsG0680035536.01.T01:cds;Parent=MsG0680035536.01.T01
Chr6 CDS 107750199 107750270 107750199 ID=MsG0680035536.01.T01:cds;Parent=MsG0680035536.01.T01
Chr6 CDS 107750898 107751014 107750898 ID=MsG0680035536.01.T01:cds;Parent=MsG0680035536.01.T01
Chr6 CDS 107751129 107751194 107751129 ID=MsG0680035536.01.T01:cds;Parent=MsG0680035536.01.T01
Chr6 CDS 107751278 107751394 107751278 ID=MsG0680035536.01.T01:cds;Parent=MsG0680035536.01.T01
Chr6 three_prime_UTR 107751395 107751851 107751395 ID=MsG0680035536.01.T01:three_prime_utr;Parent=MsG0680035536.01.T01
Gene Sequence

>MsG0680035536.01.T01

TTGCAGAGTCCTTCTGTATCATCGATTGTCTCAAAGAAAGATGGTTCTGGCTCTACTGGCAGCAGTTCCTTAAGAGCCCTTGCTTTAATAGGAGCTGGTGTCTCAGGTCTTCTGGGTTTTGCAACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTCGCATCTCCACACTATCCATGGCCTCACGAGGGCATCCTCAGTTCATATGATCACGCTTCGATTCGCCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTACACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGAAGATGGCCCCAATGATGAGGGTGAGATGTTTACACGCCCCGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCTGATCTAAGTCTTATTTCCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCTCTCCTAACTGGTTACCGTGACCCCCCTGCTGGTATTTCGATCAGAGAAGGATTGCATTACAATCCTTATTTCCCTGGTGGAGCCATTGCTATGCCTAAGATGCTTAATGATGGCGCTGTTGAATATGAAGATGGTACCCCTGCTACCGAAGCTCAGATGGGGAAAGATGTTGTGTCATTTTTGTCTTGGGCAGCGGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTCAAATGGATATTTGTACTTTCATTGGCATTACTTCAAGCCGCTTATTATCGTCGCCTTCGGTGGTCTGTTCTTAAGTCTCGCAAGTTGGTTCTTGATGTTGTCAACTAG
Protein sequence

>MsG0680035536.01.T01

LQSPSVSSIVSKKDGSGSTGSSSLRALALIGAGVSGLLGFATTASADEAEHGLASPHYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLISKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*