Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040071.01.T01 | XP_003624512.1 | 98.592 | 213 | 3 | 0 | 10 | 222 | 61 | 273 | 2.45E-153 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040071.01.T01 | P51132 | 84.163 | 221 | 35 | 0 | 2 | 222 | 52 | 272 | 9.47E-143 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040071.01.T01 | G7KXA6 | 98.592 | 213 | 3 | 0 | 10 | 222 | 61 | 273 | 1.17e-153 | 436 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0680034909.01 | MsG0780040071.01 | 0.857829 | 1.250324e-62 | 3.126522e-59 |
| MsG0480020002.01 | MsG0780040071.01 | -0.801842 | 7.439618e-49 | 3.589473e-46 |
| MsG0480021836.01 | MsG0780040071.01 | 0.852990 | 3.211685e-61 | 6.834911e-58 |
| MsG0480022615.01 | MsG0780040071.01 | 0.804666 | 1.936314e-49 | 1.004247e-46 |
| MsG0480023936.01 | MsG0780040071.01 | 0.826283 | 2.953282e-54 | 2.757474e-51 |
| MsG0580025182.01 | MsG0780040071.01 | 0.801017 | 1.097879e-48 | 5.188022e-46 |
| MsG0780040071.01 | MsG0780040576.01 | 0.805219 | 1.483858e-49 | 7.806166e-47 |
| MsG0780040071.01 | MsG0880042435.01 | 0.851403 | 9.079617e-61 | 1.835802e-57 |
| MsG0780040071.01 | MsG0880044455.01 | 0.817743 | 2.815157e-52 | 2.067396e-49 |
| MsG0780040071.01 | MsG0880045555.01 | 0.807413 | 5.116908e-50 | 2.848265e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780040071.01 | MsG0680031448.01 | PPI |
| MsG0680031446.01 | MsG0780040071.01 | PPI |
| MsG0680035536.01 | MsG0780040071.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040071.01.T01 | MTR_7g084150 | 98.592 | 213 | 3 | 0 | 10 | 222 | 61 | 273 | 2.97e-157 | 436 |
| MsG0780040071.01.T01 | MTR_3g082230 | 79.688 | 64 | 13 | 0 | 103 | 166 | 68 | 131 | 2.11e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040071.01.T01 | AT5G13430 | 83.410 | 217 | 36 | 0 | 6 | 222 | 56 | 272 | 5.13e-138 | 388 |
| MsG0780040071.01.T01 | AT5G13440 | 84.038 | 213 | 34 | 0 | 10 | 222 | 62 | 274 | 6.49e-138 | 387 |
Find 73 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTCATTATGATATTTC+TGG | 0.147844 | 7:+72731357 | MsG0780040071.01.T01:CDS |
| GAAACAGTTGCAGGAATTTC+AGG | 0.237158 | 7:-72730868 | None:intergenic |
| ATGATATTTCTGGCAGAATT+AGG | 0.242646 | 7:+72731367 | MsG0780040071.01.T01:CDS |
| CCGATCACAACGAGCCATTC+TGG | 0.268480 | 7:-72731261 | None:intergenic |
| GGTACCAACTTATTCATTCT+TGG | 0.306788 | 7:+72731416 | MsG0780040071.01.T01:CDS |
| AACAGATGACGATGTGAAAT+TGG | 0.317786 | 7:+72731176 | MsG0780040071.01.T01:CDS |
| GATCGGTGTTTGCACACATC+TGG | 0.323690 | 7:+72731278 | MsG0780040071.01.T01:CDS |
| CTCCGAATTTCAAGTATGTT+TGG | 0.327058 | 7:+72731598 | MsG0780040071.01.T01:three_prime_UTR |
| TTCGCATACTTTGTCCTAAC+AGG | 0.331271 | 7:+72730976 | MsG0780040071.01.T01:CDS |
| ATCATATCATAAATTACATT+TGG | 0.332883 | 7:+72731725 | MsG0780040071.01.T01:three_prime_UTR |
| GGGACCTGCACCATACAATT+TGG | 0.359660 | 7:+72731392 | MsG0780040071.01.T01:CDS |
| CGCCAAACATACTTGAAATT+CGG | 0.375232 | 7:-72731600 | None:intergenic |
| TGCATTCCCTTGCCAAATGC+TGG | 0.381560 | 7:+72731303 | MsG0780040071.01.T01:CDS |
| CCGCCAAAGTCTCCAGCATT+TGG | 0.391956 | 7:-72731315 | None:intergenic |
| TTAACAGCAGAAACAGTTGC+AGG | 0.410008 | 7:-72730877 | None:intergenic |
| TCATACACAATCTTTGAAGA+TGG | 0.414369 | 7:-72730904 | None:intergenic |
| AACAAATAATAAAGATTCTC+AGG | 0.415954 | 7:-72731551 | None:intergenic |
| TTGCCAAATGCTGGAGACTT+TGG | 0.416842 | 7:+72731312 | MsG0780040071.01.T01:CDS |
| GCCCTCTTGCTTGGATCACC+AGG | 0.425512 | 7:-72730952 | None:intergenic |
| GTTGATCGGTTAAAGACCTT+GGG | 0.438975 | 7:+72731452 | MsG0780040071.01.T01:exon |
| TAAAAGCTGATGATGACTTC+AGG | 0.441229 | 7:+72731679 | MsG0780040071.01.T01:three_prime_UTR |
| TATGCGAATGCCCTCTTGCT+TGG | 0.442545 | 7:-72730961 | None:intergenic |
| AAACAAACCTTCCACCTGTT+AGG | 0.452175 | 7:-72730990 | None:intergenic |
| CCAAATGCTGGAGACTTTGG+CGG | 0.457248 | 7:+72731315 | MsG0780040071.01.T01:CDS |
| GTGGAAAGCCAGTATTCATC+AGG | 0.460050 | 7:+72731148 | MsG0780040071.01.T01:CDS |
| ATTGTGCGTATGCTATTCGT+TGG | 0.461507 | 7:+72730699 | None:intergenic |
| CGATCACAACGAGCCATTCT+GGG | 0.462447 | 7:-72731260 | None:intergenic |
| GCTCAGCATGTCCGCAAGTA+AGG | 0.463109 | 7:+72731050 | MsG0780040071.01.T01:CDS |
| ACCTCCAAATTGTATGGTGC+AGG | 0.482330 | 7:-72731396 | None:intergenic |
| GTTCTGCGCCTGATGAATAC+TGG | 0.484039 | 7:-72731156 | None:intergenic |
| CAAACTTGAGGACAAGTAAA+CGG | 0.484302 | 7:-72731026 | None:intergenic |
| TGTTGATCGGTTAAAGACCT+TGG | 0.487515 | 7:+72731451 | MsG0780040071.01.T01:exon |
| CACCAGGAGGAAACCGTTCA+TGG | 0.490179 | 7:-72730936 | None:intergenic |
| GTTGGTACCTCCAAATTGTA+TGG | 0.490642 | 7:-72731402 | None:intergenic |
| AGTAGTGCCTGGCTCAATGC+TGG | 0.496319 | 7:-72731109 | None:intergenic |
| ACCAACTTATTCATTCTTGG+AGG | 0.499770 | 7:+72731419 | MsG0780040071.01.T01:CDS |
| AAATGCGCCATGGACATACT+TGG | 0.503500 | 7:+72731528 | MsG0780040071.01.T01:three_prime_UTR |
| TCCTCCAAGAATGAATAAGT+TGG | 0.514284 | 7:-72731420 | None:intergenic |
| AAGTAAGGATGTTCTTGCTA+TGG | 0.519506 | 7:+72731065 | MsG0780040071.01.T01:CDS |
| AACCATGAACGGTTTCCTCC+TGG | 0.520987 | 7:+72730934 | MsG0780040071.01.T01:CDS |
| GAGGAAAACAAGTTGTTGAT+CGG | 0.524976 | 7:+72731438 | MsG0780040071.01.T01:CDS |
| CCAGAATGGCTCGTTGTGAT+CGG | 0.536344 | 7:+72731261 | MsG0780040071.01.T01:CDS |
| ATCGGTGTTTGCACACATCT+GGG | 0.542075 | 7:+72731279 | MsG0780040071.01.T01:CDS |
| GATCTGTCCAGCATTGAGCC+AGG | 0.548945 | 7:+72731102 | MsG0780040071.01.T01:CDS |
| GCACTACTGTCACTGTTAAG+TGG | 0.549316 | 7:+72731124 | MsG0780040071.01.T01:CDS |
| TATTTCTGGCAGAATTAGGA+AGG | 0.553507 | 7:+72731371 | MsG0780040071.01.T01:CDS |
| GACCTTGGGCTGCTCACTAG+TGG | 0.554881 | 7:+72731466 | MsG0780040071.01.T01:three_prime_UTR |
| CTCTCTCAGAATCTTGCTGA+GGG | 0.558977 | 7:-72731230 | None:intergenic |
| ATGCTGGAGACTTTGGCGGA+TGG | 0.561425 | 7:+72731319 | MsG0780040071.01.T01:CDS |
| TTGGCAAACAGTGTTGATGT+TGG | 0.567703 | 7:+72731195 | MsG0780040071.01.T01:CDS |
| ACTCTCTCAGAATCTTGCTG+AGG | 0.573430 | 7:-72731231 | None:intergenic |
| TTGTGCGTATGCTATTCGTT+GGG | 0.585841 | 7:+72730700 | None:intergenic |
| TTAACAGTGACAGTAGTGCC+TGG | 0.588903 | 7:-72731120 | None:intergenic |
| GCATACTTTGTCCTAACAGG+TGG | 0.589727 | 7:+72730979 | MsG0780040071.01.T01:CDS |
| ACTGTCACTGTTAAGTGGCG+TGG | 0.593737 | 7:+72731129 | MsG0780040071.01.T01:CDS |
| TCATAATGAGATCCATGACA+TGG | 0.597841 | 7:-72731348 | None:intergenic |
| TTCCACTAGTGAGCAGCCCA+AGG | 0.599328 | 7:-72731468 | None:intergenic |
| TCTCAGGCCAAGTATGTCCA+TGG | 0.606329 | 7:-72731535 | None:intergenic |
| AAAGTCTCCAGCATTTGGCA+AGG | 0.607108 | 7:-72731310 | None:intergenic |
| ACTTTGTCCTAACAGGTGGA+AGG | 0.607644 | 7:+72730983 | MsG0780040071.01.T01:CDS |
| AGAGAGTCAAGAACCCAGAA+TGG | 0.614301 | 7:+72731247 | MsG0780040071.01.T01:CDS |
| ATGATGAACACAACCATGAA+CGG | 0.617851 | 7:+72730923 | MsG0780040071.01.T01:CDS |
| ACCTGCACCATACAATTTGG+AGG | 0.619569 | 7:+72731395 | MsG0780040071.01.T01:CDS |
| GATAATGTCGAAATGCGCCA+TGG | 0.622811 | 7:+72731518 | MsG0780040071.01.T01:three_prime_UTR |
| ACATGCTGAGCACAAACTTG+AGG | 0.627184 | 7:-72731038 | None:intergenic |
| AGCAAGAACATCCTTACTTG+CGG | 0.635054 | 7:-72731061 | None:intergenic |
| AAGTCTCCAGCATTTGGCAA+GGG | 0.635128 | 7:-72731309 | None:intergenic |
| ATTTCTGGCAGAATTAGGAA+GGG | 0.638657 | 7:+72731372 | MsG0780040071.01.T01:CDS |
| CTCCTGGTGATCCAAGCAAG+AGG | 0.642258 | 7:+72730950 | MsG0780040071.01.T01:CDS |
| TCCTGGTGATCCAAGCAAGA+GGG | 0.654973 | 7:+72730951 | MsG0780040071.01.T01:CDS |
| CATAATGAGATCCATGACAT+GGG | 0.657346 | 7:-72731347 | None:intergenic |
| GACAAGTAAACGGATCAAAG+AGG | 0.665826 | 7:-72731016 | None:intergenic |
| CTCTTGCTTGGATCACCAGG+AGG | 0.672619 | 7:-72730949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAATTAAATCAATTAA+TGG | - | Chr7:72730793-72730812 | None:intergenic | 10.0% |
| !!! | ATTTATATTTTTATCTAACT+AGG | + | Chr7:72730760-72730779 | MsG0780040071.01.T01:intron | 10.0% |
| !! | ATCATATCATAAATTACATT+TGG | + | Chr7:72731725-72731744 | MsG0780040071.01.T01:three_prime_UTR | 15.0% |
| !!! | CCAAAATATTTTTGATTATT+TGG | + | Chr7:72731496-72731515 | MsG0780040071.01.T01:three_prime_UTR | 15.0% |
| !!! | CCAAATAATCAAAAATATTT+TGG | - | Chr7:72731499-72731518 | None:intergenic | 15.0% |
| !! | AAATTGTAAACAAAAAAGTC+AGG | - | Chr7:72731645-72731664 | None:intergenic | 20.0% |
| !! | AACAAATAATAAAGATTCTC+AGG | - | Chr7:72731554-72731573 | None:intergenic | 20.0% |
| GGATCTCATTATGATATTTC+TGG | + | Chr7:72731357-72731376 | MsG0780040071.01.T01:CDS | 30.0% | |
| ! | TCATACACAATCTTTGAAGA+TGG | - | Chr7:72730907-72730926 | None:intergenic | 30.0% |
| !! | ATGATATTTCTGGCAGAATT+AGG | + | Chr7:72731367-72731386 | MsG0780040071.01.T01:CDS | 30.0% |
| !! | GATTTAATTTGATTGCATCC+AGG | + | Chr7:72730799-72730818 | MsG0780040071.01.T01:intron | 30.0% |
| !!! | TAATGCTGTTTTCTTTTGTG+TGG | - | Chr7:72730846-72730865 | None:intergenic | 30.0% |
| AACAGATGACGATGTGAAAT+TGG | + | Chr7:72731176-72731195 | MsG0780040071.01.T01:CDS | 35.0% | |
| AAGTAAGGATGTTCTTGCTA+TGG | + | Chr7:72731065-72731084 | MsG0780040071.01.T01:CDS | 35.0% | |
| ACCAACTTATTCATTCTTGG+AGG | + | Chr7:72731419-72731438 | MsG0780040071.01.T01:CDS | 35.0% | |
| ATGATGAACACAACCATGAA+CGG | + | Chr7:72730923-72730942 | MsG0780040071.01.T01:CDS | 35.0% | |
| CAAACTTGAGGACAAGTAAA+CGG | - | Chr7:72731029-72731048 | None:intergenic | 35.0% | |
| CATAATGAGATCCATGACAT+GGG | - | Chr7:72731350-72731369 | None:intergenic | 35.0% | |
| CGCCAAACATACTTGAAATT+CGG | - | Chr7:72731603-72731622 | None:intergenic | 35.0% | |
| GAGGAAAACAAGTTGTTGAT+CGG | + | Chr7:72731438-72731457 | MsG0780040071.01.T01:CDS | 35.0% | |
| GGTACCAACTTATTCATTCT+TGG | + | Chr7:72731416-72731435 | MsG0780040071.01.T01:CDS | 35.0% | |
| TCATAATGAGATCCATGACA+TGG | - | Chr7:72731351-72731370 | None:intergenic | 35.0% | |
| TCCTCCAAGAATGAATAAGT+TGG | - | Chr7:72731423-72731442 | None:intergenic | 35.0% | |
| ! | CTCCGAATTTCAAGTATGTT+TGG | + | Chr7:72731598-72731617 | MsG0780040071.01.T01:three_prime_UTR | 35.0% |
| ! | TAAAAGCTGATGATGACTTC+AGG | + | Chr7:72731679-72731698 | MsG0780040071.01.T01:three_prime_UTR | 35.0% |
| !! | ATTTCTGGCAGAATTAGGAA+GGG | + | Chr7:72731372-72731391 | MsG0780040071.01.T01:CDS | 35.0% |
| !! | TATTTCTGGCAGAATTAGGA+AGG | + | Chr7:72731371-72731390 | MsG0780040071.01.T01:CDS | 35.0% |
| AAACAAACCTTCCACCTGTT+AGG | - | Chr7:72730993-72731012 | None:intergenic | 40.0% | |
| AGCAAGAACATCCTTACTTG+CGG | - | Chr7:72731064-72731083 | None:intergenic | 40.0% | |
| GAAACAGTTGCAGGAATTTC+AGG | - | Chr7:72730871-72730890 | None:intergenic | 40.0% | |
| GACAAGTAAACGGATCAAAG+AGG | - | Chr7:72731019-72731038 | None:intergenic | 40.0% | |
| GTTGATCGGTTAAAGACCTT+GGG | + | Chr7:72731452-72731471 | MsG0780040071.01.T01:exon | 40.0% | |
| GTTGGTACCTCCAAATTGTA+TGG | - | Chr7:72731405-72731424 | None:intergenic | 40.0% | |
| TGTTGATCGGTTAAAGACCT+TGG | + | Chr7:72731451-72731470 | MsG0780040071.01.T01:exon | 40.0% | |
| TTAACAGCAGAAACAGTTGC+AGG | - | Chr7:72730880-72730899 | None:intergenic | 40.0% | |
| TTCGCATACTTTGTCCTAAC+AGG | + | Chr7:72730976-72730995 | MsG0780040071.01.T01:CDS | 40.0% | |
| ! | TTGGGTTGTGTGTTAGTATG+AGG | + | Chr7:72730718-72730737 | MsG0780040071.01.T01:intron | 40.0% |
| !! | TTGGCAAACAGTGTTGATGT+TGG | + | Chr7:72731195-72731214 | MsG0780040071.01.T01:CDS | 40.0% |
| AAAGTCTCCAGCATTTGGCA+AGG | - | Chr7:72731313-72731332 | None:intergenic | 45.0% | |
| AAATGCGCCATGGACATACT+TGG | + | Chr7:72731528-72731547 | MsG0780040071.01.T01:three_prime_UTR | 45.0% | |
| AAGTCTCCAGCATTTGGCAA+GGG | - | Chr7:72731312-72731331 | None:intergenic | 45.0% | |
| ACATGCTGAGCACAAACTTG+AGG | - | Chr7:72731041-72731060 | None:intergenic | 45.0% | |
| ACCTCCAAATTGTATGGTGC+AGG | - | Chr7:72731399-72731418 | None:intergenic | 45.0% | |
| ACCTGCACCATACAATTTGG+AGG | + | Chr7:72731395-72731414 | MsG0780040071.01.T01:CDS | 45.0% | |
| ACTCTCTCAGAATCTTGCTG+AGG | - | Chr7:72731234-72731253 | None:intergenic | 45.0% | |
| ACTTTGTCCTAACAGGTGGA+AGG | + | Chr7:72730983-72731002 | MsG0780040071.01.T01:CDS | 45.0% | |
| AGAGAGTCAAGAACCCAGAA+TGG | + | Chr7:72731247-72731266 | MsG0780040071.01.T01:CDS | 45.0% | |
| AGTGACTCAGTAGCAAAACC+TGG | - | Chr7:72730820-72730839 | None:intergenic | 45.0% | |
| CTCTCTCAGAATCTTGCTGA+GGG | - | Chr7:72731233-72731252 | None:intergenic | 45.0% | |
| GATAATGTCGAAATGCGCCA+TGG | + | Chr7:72731518-72731537 | MsG0780040071.01.T01:three_prime_UTR | 45.0% | |
| GCACTACTGTCACTGTTAAG+TGG | + | Chr7:72731124-72731143 | MsG0780040071.01.T01:CDS | 45.0% | |
| GCATACTTTGTCCTAACAGG+TGG | + | Chr7:72730979-72730998 | MsG0780040071.01.T01:CDS | 45.0% | |
| GTGGAAAGCCAGTATTCATC+AGG | + | Chr7:72731148-72731167 | MsG0780040071.01.T01:CDS | 45.0% | |
| TTAACAGTGACAGTAGTGCC+TGG | - | Chr7:72731123-72731142 | None:intergenic | 45.0% | |
| TTGCCAAATGCTGGAGACTT+TGG | + | Chr7:72731312-72731331 | MsG0780040071.01.T01:CDS | 45.0% | |
| ! | ATCGGTGTTTGCACACATCT+GGG | + | Chr7:72731279-72731298 | MsG0780040071.01.T01:CDS | 45.0% |
| AACCATGAACGGTTTCCTCC+TGG | + | Chr7:72730934-72730953 | MsG0780040071.01.T01:CDS | 50.0% | |
| ACTGTCACTGTTAAGTGGCG+TGG | + | Chr7:72731129-72731148 | MsG0780040071.01.T01:CDS | 50.0% | |
| CCAAATGCTGGAGACTTTGG+CGG | + | Chr7:72731315-72731334 | MsG0780040071.01.T01:CDS | 50.0% | |
| CCAGAATGGCTCGTTGTGAT+CGG | + | Chr7:72731261-72731280 | MsG0780040071.01.T01:CDS | 50.0% | |
| CGATCACAACGAGCCATTCT+GGG | - | Chr7:72731263-72731282 | None:intergenic | 50.0% | |
| GGGACCTGCACCATACAATT+TGG | + | Chr7:72731392-72731411 | MsG0780040071.01.T01:CDS | 50.0% | |
| GTTCTGCGCCTGATGAATAC+TGG | - | Chr7:72731159-72731178 | None:intergenic | 50.0% | |
| TATGCGAATGCCCTCTTGCT+TGG | - | Chr7:72730964-72730983 | None:intergenic | 50.0% | |
| TCCTGGTGATCCAAGCAAGA+GGG | + | Chr7:72730951-72730970 | MsG0780040071.01.T01:CDS | 50.0% | |
| TCTCAGGCCAAGTATGTCCA+TGG | - | Chr7:72731538-72731557 | None:intergenic | 50.0% | |
| TGCATTCCCTTGCCAAATGC+TGG | + | Chr7:72731303-72731322 | MsG0780040071.01.T01:CDS | 50.0% | |
| ! | GATCGGTGTTTGCACACATC+TGG | + | Chr7:72731278-72731297 | MsG0780040071.01.T01:CDS | 50.0% |
| !! | GGATGGTTTTGCCCATGTCA+TGG | + | Chr7:72731336-72731355 | MsG0780040071.01.T01:CDS | 50.0% |
| AGTAGTGCCTGGCTCAATGC+TGG | - | Chr7:72731112-72731131 | None:intergenic | 55.0% | |
| ATGCTGGAGACTTTGGCGGA+TGG | + | Chr7:72731319-72731338 | MsG0780040071.01.T01:CDS | 55.0% | |
| CACCAGGAGGAAACCGTTCA+TGG | - | Chr7:72730939-72730958 | None:intergenic | 55.0% | |
| CCGATCACAACGAGCCATTC+TGG | - | Chr7:72731264-72731283 | None:intergenic | 55.0% | |
| CCGCCAAAGTCTCCAGCATT+TGG | - | Chr7:72731318-72731337 | None:intergenic | 55.0% | |
| CTCCTGGTGATCCAAGCAAG+AGG | + | Chr7:72730950-72730969 | MsG0780040071.01.T01:CDS | 55.0% | |
| CTCTTGCTTGGATCACCAGG+AGG | - | Chr7:72730952-72730971 | None:intergenic | 55.0% | |
| GCTCAGCATGTCCGCAAGTA+AGG | + | Chr7:72731050-72731069 | MsG0780040071.01.T01:CDS | 55.0% | |
| TTCCACTAGTGAGCAGCCCA+AGG | - | Chr7:72731471-72731490 | None:intergenic | 55.0% | |
| ! | GATCTGTCCAGCATTGAGCC+AGG | + | Chr7:72731102-72731121 | MsG0780040071.01.T01:CDS | 55.0% |
| GACCTTGGGCTGCTCACTAG+TGG | + | Chr7:72731466-72731485 | MsG0780040071.01.T01:three_prime_UTR | 60.0% | |
| GCCCTCTTGCTTGGATCACC+AGG | - | Chr7:72730955-72730974 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 72730708 | 72731757 | 72730708 | ID=MsG0780040071.01;Name=MsG0780040071.01 |
| Chr7 | mRNA | 72730708 | 72731757 | 72730708 | ID=MsG0780040071.01.T01;Parent=MsG0780040071.01;Name=MsG0780040071.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0.5|1|1|1|2|293|222 |
| Chr7 | exon | 72730708 | 72730732 | 72730708 | ID=MsG0780040071.01.T01:exon:12897;Parent=MsG0780040071.01.T01 |
| Chr7 | exon | 72730821 | 72731757 | 72730821 | ID=MsG0780040071.01.T01:exon:12898;Parent=MsG0780040071.01.T01 |
| Chr7 | CDS | 72730708 | 72730732 | 72730708 | ID=MsG0780040071.01.T01:cds;Parent=MsG0780040071.01.T01 |
| Chr7 | CDS | 72730821 | 72731464 | 72730821 | ID=MsG0780040071.01.T01:cds;Parent=MsG0780040071.01.T01 |
| Chr7 | three_prime_UTR | 72731465 | 72731757 | 72731465 | ID=MsG0780040071.01.T01:three_prime_utr;Parent=MsG0780040071.01.T01 |
| Gene Sequence |
| Protein sequence |
