AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032360.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032360.01.T01 MTR_5g070320 72.492 309 47 4 57 358 186 463 5.02e-143 434
MsG0680032360.01.T01 MTR_5g070320 72.492 309 47 4 57 358 282 559 3.45e-142 434
MsG0680032360.01.T01 MTR_5g070320 72.492 309 47 4 57 358 473 750 1.38e-141 436
MsG0680032360.01.T01 MTR_3g463680 56.735 245 80 1 114 358 529 747 4.82e-92 300
MsG0680032360.01.T01 MTR_3g463680 24.211 190 112 4 139 327 1197 1355 6.78e-12 67.4
MsG0680032360.01.T01 MTR_7g104110 43.145 248 112 2 114 358 540 761 4.53e-60 209
MsG0680032360.01.T01 MTR_8g014360 42.241 232 108 1 124 355 550 755 4.25e-59 206
MsG0680032360.01.T01 MTR_2g102640 43.636 220 98 1 118 337 533 726 5.10e-59 206
MsG0680032360.01.T01 MTR_2g102640 24.737 190 111 4 139 327 1212 1370 1.56e-11 66.2
MsG0680032360.01.T01 MTR_8g014360 42.241 232 108 1 124 355 550 755 9.87e-59 205
MsG0680032360.01.T01 MTR_1g011650 41.667 228 107 2 117 344 531 732 2.03e-58 204
MsG0680032360.01.T01 MTR_1g011650 26.111 180 101 4 139 317 1231 1379 4.05e-12 68.2
MsG0680032360.01.T01 MTR_2g102660 44.091 220 97 1 118 337 533 726 7.17e-58 203
MsG0680032360.01.T01 MTR_2g102660 25.789 190 109 4 139 327 1209 1367 3.40e-13 71.6
MsG0680032360.01.T01 MTR_2g102670 42.667 225 102 2 118 341 515 713 3.28e-57 201
MsG0680032360.01.T01 MTR_2g102670 25.789 190 109 4 139 327 1192 1350 3.77e-13 71.2
MsG0680032360.01.T01 MTR_7g098320 39.184 245 123 1 114 358 520 738 3.60e-57 201
MsG0680032360.01.T01 MTR_7g104150 40.323 248 119 2 114 358 546 767 3.64e-57 201
MsG0680032360.01.T01 MTR_2g101090 41.350 237 113 1 112 348 519 729 4.07e-57 201
MsG0680032360.01.T01 MTR_3g107870 40.417 240 117 1 114 353 528 741 6.40e-57 200
MsG0680032360.01.T01 MTR_7g098320 39.184 245 123 1 114 358 520 738 6.51e-57 200
MsG0680032360.01.T01 MTR_1g050525 40.323 248 119 2 114 358 538 759 6.98e-57 200
MsG0680032360.01.T01 MTR_7g098300 39.592 245 122 1 114 358 524 742 1.25e-56 199
MsG0680032360.01.T01 MTR_7g098750 38.367 245 125 1 114 358 524 742 1.99e-56 199
MsG0680032360.01.T01 MTR_7g098750 38.367 245 125 1 114 358 524 742 2.47e-56 198
MsG0680032360.01.T01 MTR_7g098370 38.367 245 125 1 114 358 524 742 2.77e-56 198
MsG0680032360.01.T01 MTR_7g098740 38.589 241 122 1 118 358 528 742 3.17e-56 198
MsG0680032360.01.T01 MTR_7g098750 38.367 245 125 1 114 358 254 472 3.57e-56 198
MsG0680032360.01.T01 MTR_7g104130 43.882 237 104 2 125 358 557 767 1.44e-55 196
MsG0680032360.01.T01 MTR_7g104130 43.882 237 104 2 125 358 557 767 3.08e-55 195
MsG0680032360.01.T01 MTR_7g098760 39.676 247 119 3 114 358 524 742 5.27e-55 194
MsG0680032360.01.T01 MTR_7g098760 23.786 206 125 5 139 343 1234 1408 2.25e-11 65.9
MsG0680032360.01.T01 MTR_7g104100 34.743 331 160 4 33 358 486 765 7.02e-55 194
MsG0680032360.01.T01 MTR_1g011640 42.922 219 98 2 132 350 535 726 4.38e-54 192
MsG0680032360.01.T01 MTR_1g011640 24.737 190 111 4 139 327 1208 1366 7.02e-12 67.4
MsG0680032360.01.T01 MTR_4g011620 40.517 232 112 1 113 344 522 727 1.97e-52 187
MsG0680032360.01.T01 MTR_4g113070 38.554 249 122 4 113 358 511 731 3.88e-52 186
MsG0680032360.01.T01 MTR_1g492950 41.129 248 117 2 114 358 551 772 5.52e-51 183
MsG0680032360.01.T01 MTR_4g011640 40.000 245 121 1 114 358 533 751 3.11e-49 178
MsG0680032360.01.T01 MTR_4g011640 26.316 190 108 4 139 327 1217 1375 8.05e-13 70.5
MsG0680032360.01.T01 MTR_4g011630 40.336 238 116 1 121 358 542 753 9.30e-48 174
MsG0680032360.01.T01 MTR_4g011630 25.346 217 125 5 117 327 1193 1378 2.89e-13 71.6
MsG0680032360.01.T01 MTR_7g098800 34.286 245 135 1 114 358 495 713 1.20e-47 173
MsG0680032360.01.T01 MTR_4g107830 70.588 102 30 0 37 138 1 102 5.94e-47 161
MsG0680032360.01.T01 MTR_7g098780 35.102 245 133 1 114 358 537 755 1.04e-46 171
MsG0680032360.01.T01 MTR_7g098780 23.958 192 114 4 137 327 1197 1357 5.97e-13 70.9
MsG0680032360.01.T01 MTR_4g123850 36.214 243 125 4 112 353 528 741 2.41e-44 164
MsG0680032360.01.T01 MTR_4g123850 25.654 191 110 5 138 327 1211 1370 8.12e-14 73.6
MsG0680032360.01.T01 MTR_4g107810 86.111 72 10 0 34 105 58 129 3.48e-40 145
MsG0680032360.01.T01 MTR_7g098890 29.814 322 159 6 35 350 420 680 7.45e-40 150
MsG0680032360.01.T01 MTR_4g107810 93.651 63 4 0 37 99 1 63 5.93e-39 140
MsG0680032360.01.T01 MTR_4g107760 93.651 63 4 0 37 99 1 63 5.93e-39 140
MsG0680032360.01.T01 MTR_4g107720 93.651 63 4 0 37 99 1 63 1.95e-38 139
MsG0680032360.01.T01 MTR_4g107730 92.063 63 5 0 37 99 1 63 8.31e-38 137
MsG0680032360.01.T01 MTR_7g060570 65.138 109 6 1 189 297 730 806 8.22e-32 127
MsG0680032360.01.T01 MTR_8g469160 60.870 69 27 0 37 105 1 69 4.26e-26 105
MsG0680032360.01.T01 MTR_6g011380 69.841 63 19 0 37 99 1 63 1.31e-25 104
MsG0680032360.01.T01 MTR_8g103450 43.103 116 63 1 246 358 8 123 1.06e-22 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032360.01.T01 AT2G29940 64.490 245 61 1 114 358 538 756 2.47e-107 343
MsG0680032360.01.T01 AT2G26910 38.686 274 132 4 77 342 467 712 7.86e-61 211
MsG0680032360.01.T01 AT1G15520 42.060 233 109 1 118 350 535 741 5.82e-57 200
MsG0680032360.01.T01 AT1G15520 42.060 233 109 1 118 350 535 741 2.12e-56 199
MsG0680032360.01.T01 AT1G15520 25.263 190 110 4 139 327 1206 1364 2.65e-12 68.9
MsG0680032360.01.T01 AT1G66950 39.200 250 123 2 112 358 550 773 3.31e-56 198
MsG0680032360.01.T01 AT1G59870 41.909 241 114 1 112 352 546 760 5.93e-54 191
MsG0680032360.01.T01 AT1G59870 26.842 190 107 5 139 327 1248 1406 6.71e-13 70.5
MsG0680032360.01.T01 AT2G36380 37.600 250 127 2 112 358 548 771 2.81e-52 187
MsG0680032360.01.T01 AT1G15210 40.870 230 109 2 122 351 554 756 1.44e-50 182
MsG0680032360.01.T01 AT1G15210 26.111 180 101 5 139 317 1221 1369 1.23e-11 66.6
MsG0680032360.01.T01 AT3G16340 39.316 234 116 1 109 342 519 726 1.80e-49 179
MsG0680032360.01.T01 AT3G16340 24.211 190 112 5 139 327 1195 1353 2.13e-11 65.9
MsG0680032360.01.T01 AT3G16340 39.316 234 116 1 109 342 514 721 1.81e-49 179
MsG0680032360.01.T01 AT3G16340 24.211 190 112 5 139 327 1190 1348 2.16e-11 65.9
MsG0680032360.01.T01 AT3G53480 34.694 245 132 3 114 358 551 767 3.40e-44 163
MsG0680032360.01.T01 AT2G37280 35.510 245 130 3 114 358 516 732 4.32e-44 163
MsG0680032360.01.T01 AT2G37280 35.510 245 130 3 114 358 545 761 5.22e-44 162
MsG0680032360.01.T01 AT2G37280 35.223 247 132 3 112 358 356 574 5.69e-44 162
MsG0680032360.01.T01 AT2G37280 35.510 245 130 3 114 358 516 732 5.82e-44 162
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 511 719 6.43e-44 162
MsG0680032360.01.T01 AT4G15233 27.778 180 100 4 138 317 1163 1312 1.23e-12 69.7
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 520 728 6.80e-44 162
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 520 728 7.64e-44 162
MsG0680032360.01.T01 AT4G15233 27.778 180 100 4 138 317 1172 1321 1.36e-12 69.7
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 458 666 7.92e-44 162
MsG0680032360.01.T01 AT4G15233 27.778 180 100 4 138 317 1110 1259 1.58e-12 69.3
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 458 666 7.92e-44 162
MsG0680032360.01.T01 AT4G15233 27.778 180 100 4 138 317 1110 1259 1.58e-12 69.3
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 502 710 8.06e-44 162
MsG0680032360.01.T01 AT4G15233 27.778 180 100 4 138 317 1154 1303 1.39e-12 69.7
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 440 648 9.78e-44 162
MsG0680032360.01.T01 AT4G15233 27.778 180 100 4 138 317 1029 1178 1.89e-12 69.3
MsG0680032360.01.T01 AT4G15233 35.865 237 124 3 117 353 440 648 9.78e-44 162
MsG0680032360.01.T01 AT4G15233 27.778 180 100 4 138 317 1029 1178 1.89e-12 69.3
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 506 711 2.63e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1167 1316 5.62e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 506 711 2.63e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1167 1316 5.62e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 506 711 2.63e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1167 1316 5.62e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 506 711 2.63e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1167 1316 5.62e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 509 714 2.63e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1170 1319 5.63e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 513 718 2.68e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1174 1323 5.73e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 513 718 2.68e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1174 1323 5.73e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 513 718 2.68e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1174 1323 5.73e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 513 718 2.68e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1174 1323 5.73e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 513 718 2.68e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1174 1323 5.73e-15 77.0
MsG0680032360.01.T01 AT4G15215 36.325 234 121 3 115 348 516 721 2.71e-43 160
MsG0680032360.01.T01 AT4G15215 28.333 180 99 4 138 317 1177 1326 5.84e-15 77.0
MsG0680032360.01.T01 AT4G15236 34.599 237 127 3 117 353 518 726 3.00e-42 157
MsG0680032360.01.T01 AT4G15236 28.729 181 97 5 138 317 1170 1319 3.02e-12 68.6
MsG0680032360.01.T01 AT4G15230 34.545 220 117 2 115 334 519 711 1.43e-37 144
MsG0680032360.01.T01 AT4G15230 34.545 220 117 2 115 334 440 632 1.77e-37 144
MsG0680032360.01.T01 AT4G15230 27.778 180 100 4 138 317 1101 1250 2.59e-14 75.1
MsG0680032360.01.T01 AT4G15230 34.545 220 117 2 115 334 519 711 1.80e-37 144
MsG0680032360.01.T01 AT4G15230 27.778 180 100 4 138 317 1180 1329 2.44e-14 75.1
MsG0680032360.01.T01 AT4G15230 34.545 220 117 2 115 334 519 711 1.80e-37 144
MsG0680032360.01.T01 AT4G15230 27.778 180 100 4 138 317 1180 1329 2.44e-14 75.1
MsG0680032360.01.T01 AT3G30842 27.273 253 151 2 106 358 515 734 9.40e-33 130
MsG0680032360.01.T01 AT5G62740 71.429 63 18 0 37 99 1 63 9.52e-28 110
MsG0680032360.01.T01 AT1G69840 60.870 69 27 0 37 105 1 69 1.59e-27 110
MsG0680032360.01.T01 AT1G69840 60.870 69 27 0 37 105 1 69 1.59e-27 110
MsG0680032360.01.T01 AT1G69840 60.870 69 27 0 37 105 1 69 1.59e-27 110
MsG0680032360.01.T01 AT1G69840 60.870 69 27 0 37 105 1 69 1.59e-27 110
MsG0680032360.01.T01 AT1G69840 60.870 69 27 0 37 105 1 69 1.59e-27 110
MsG0680032360.01.T01 AT1G69840 60.870 69 27 0 37 105 1 69 1.59e-27 110
MsG0680032360.01.T01 AT1G69840 60.870 69 27 0 37 105 1 69 1.59e-27 110
MsG0680032360.01.T01 AT3G01290 60.870 69 27 0 37 105 1 69 1.48e-22 96.3

Find 84 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTCTCTGCTCTATTCTT+TGG 0.118064 6:-39255887 MsG0680032360.01.T01:CDS
TCTCTTTGCTTGTAAAATAC+TGG 0.205851 6:+39255806 None:intergenic
TGATCAAGCCGTGGTGGATA+TGG 0.207810 6:-39255334 MsG0680032360.01.T01:CDS
ATCTCTCTGCTCTATTCTTT+GGG 0.237279 6:-39255886 MsG0680032360.01.T01:CDS
GCATTGCAGTGAAAAGAAAA+TGG 0.251403 6:-39257503 MsG0680032360.01.T01:intron
CTTGTTCACATGATATTTAA+TGG 0.257184 6:-39255863 MsG0680032360.01.T01:CDS
CATTGCATGCCATGGTTTCT+TGG 0.290257 6:-39257388 MsG0680032360.01.T01:CDS
GGCTTCTATTGCACGGGATA+TGG 0.298317 6:-39255507 MsG0680032360.01.T01:CDS
CTGTTATTGAGGCTCTTATA+TGG 0.299935 6:-39255721 MsG0680032360.01.T01:CDS
CATCCTACAGATGAGTCTTA+TGG 0.325069 6:-39255917 MsG0680032360.01.T01:CDS
AGAATAGAGCAGAGAGATAA+AGG 0.342113 6:+39255891 None:intergenic
CACTCTTCGGCTACAACAAT+TGG 0.343058 6:-39257344 MsG0680032360.01.T01:CDS
CGTGGAATGACATGAAGATT+TGG 0.345515 6:+39257262 None:intergenic
ATCTACCAGTTGATGATTAC+TGG 0.347727 6:-39254811 MsG0680032360.01.T01:intron
ATGGTTCTTGCCAATACATT+TGG 0.349953 6:-39255488 MsG0680032360.01.T01:CDS
GGGGATTGTGTTGGCGGAAG+GGG 0.351553 6:-39258204 MsG0680032360.01.T01:intron
TTGTTCACATGATATTTAAT+GGG 0.380413 6:-39255862 MsG0680032360.01.T01:CDS
GTAGTGCACCAAATGGCATT+AGG 0.383287 6:-39255545 MsG0680032360.01.T01:CDS
TTTCTTGGAAAACGAATTGC+TGG 0.394254 6:-39257373 MsG0680032360.01.T01:CDS
ATATAATACCTTCATCCATC+TGG 0.395620 6:+39255247 None:intergenic
GATCAAGCCGTGGTGGATAT+GGG 0.396119 6:-39255333 MsG0680032360.01.T01:CDS
GTGGCTATGAGAGAAGGTTT+TGG 0.398028 6:-39257442 MsG0680032360.01.T01:CDS
CTCTTTGCTTGTAAAATACT+GGG 0.401880 6:+39255807 None:intergenic
TAAAGATACCTTCCTGCTAC+AGG 0.403005 6:+39255665 None:intergenic
TGTTATTGAGGCTCTTATAT+GGG 0.420385 6:-39255720 MsG0680032360.01.T01:CDS
ATCCTACAGATGAGTCTTAT+GGG 0.421410 6:-39255916 MsG0680032360.01.T01:CDS
CATTGCAGTGAAAAGAAAAT+GGG 0.429423 6:-39257502 MsG0680032360.01.T01:intron
GTTGGATTTGCCCCTGTAGC+AGG 0.435799 6:-39255677 MsG0680032360.01.T01:CDS
CGAAAAGACCTAATGCCATT+TGG 0.445135 6:+39255537 None:intergenic
ATTTGAAAAGGTGCTTCAGC+CGG 0.463345 6:-39257416 MsG0680032360.01.T01:CDS
TACTGCTTCCAGATGGATGA+AGG 0.473056 6:-39255255 MsG0680032360.01.T01:intron
TGCAGCTGAGCCAAATGTAT+TGG 0.483068 6:+39255478 None:intergenic
CGTGGTGGATATGGGGCTAC+TGG 0.483747 6:-39255325 MsG0680032360.01.T01:CDS
ACTTACCAGTAATCATCAAC+TGG 0.483785 6:+39254806 None:intergenic
TTGCTGGTCATCTCACTCTT+CGG 0.485262 6:-39257357 MsG0680032360.01.T01:CDS
AGAGCCTCAATAACAGAGTA+AGG 0.492956 6:+39255728 None:intergenic
GGAGGATTTATTGTACCTAA+AGG 0.498027 6:-39255434 MsG0680032360.01.T01:intron
TGGTTGTCACCCCTTACCTA+TGG 0.499260 6:-39255305 MsG0680032360.01.T01:CDS
TGTCTGCAGAAATCAGCAAT+TGG 0.499539 6:-39254872 MsG0680032360.01.T01:intron
TTGCACGTTGTCCATAGGTA+AGG 0.503246 6:+39255294 None:intergenic
CGGGATGCCATTGCATGCCA+TGG 0.503619 6:-39257396 MsG0680032360.01.T01:CDS
GCTGTTGTATATTACAGTGT+TGG 0.510376 6:-39255695 MsG0680032360.01.T01:CDS
TGTACCTTACTCTGTTATTG+AGG 0.514367 6:-39255732 MsG0680032360.01.T01:CDS
TTTGAAAAGGTGCTTCAGCC+GGG 0.514758 6:-39257415 MsG0680032360.01.T01:CDS
GGATGATGGCTTCTATTGCA+CGG 0.517096 6:-39255514 MsG0680032360.01.T01:CDS
CATGGCATGCAATGGCATCC+CGG 0.521469 6:+39257397 None:intergenic
TGAATTGTGAAGTGGCGAAT+GGG 0.525399 6:-39258225 MsG0680032360.01.T01:CDS
TGCACGTTGTCCATAGGTAA+GGG 0.527290 6:+39255295 None:intergenic
TATTCTATCCTGCATGGGCA+TGG 0.529071 6:-39255778 MsG0680032360.01.T01:CDS
TGTGAGACCAAGACAAAGGT+TGG 0.530281 6:-39257313 MsG0680032360.01.T01:CDS
TAACAAACCAACCTTTGTCT+TGG 0.535367 6:+39257306 None:intergenic
ATAATTTATTCTATCCTGCA+TGG 0.539822 6:-39255784 MsG0680032360.01.T01:CDS
TAATTTATTCTATCCTGCAT+GGG 0.544860 6:-39255783 MsG0680032360.01.T01:CDS
GATGATGGCTTCTATTGCAC+GGG 0.547032 6:-39255513 MsG0680032360.01.T01:CDS
AGGTACACGGAGAATCCAAC+TGG 0.555858 6:+39255748 None:intergenic
ATGAATTTACTGCTTCCAGA+TGG 0.565982 6:-39255262 MsG0680032360.01.T01:CDS
TAGGATGCAACCTTGTTCGC+AGG 0.566273 6:+39255933 None:intergenic
AAAGATACCTTCCTGCTACA+GGG 0.574102 6:+39255666 None:intergenic
GTACAATATTCCTGCGAACA+AGG 0.574678 6:-39255943 MsG0680032360.01.T01:CDS
AAGATACCTTCCTGCTACAG+GGG 0.575491 6:+39255667 None:intergenic
CTGAATTGTGAAGTGGCGAA+TGG 0.576328 6:-39258226 MsG0680032360.01.T01:CDS
TGTAATTGCACGTTGTCCAT+AGG 0.577812 6:+39255289 None:intergenic
CAAGAAACCATGGCATGCAA+TGG 0.579517 6:+39257389 None:intergenic
GTAAAAGACCATGCCCATGC+AGG 0.580657 6:+39255770 None:intergenic
TCTCAAGTGGCTATGAGAGA+AGG 0.594736 6:-39257448 MsG0680032360.01.T01:CDS
ATCAAGCCGTGGTGGATATG+GGG 0.601217 6:-39255332 MsG0680032360.01.T01:CDS
AGCTTCCTCTGATGATATCG+CGG 0.606037 6:-39255832 MsG0680032360.01.T01:CDS
TCATCAACAAGCTTCGACAA+CGG 0.616224 6:+39258262 None:intergenic
CTGGTAGATTGTTTGAAACG+AGG 0.619092 6:+39254825 None:intergenic
GCAATTGGTAACAACACAGT+AGG 0.625457 6:-39254857 MsG0680032360.01.T01:CDS
GATTTGCCCCTGTAGCAGGA+AGG 0.626258 6:-39255673 MsG0680032360.01.T01:CDS
TGAGAAGCTGAATTGTGAAG+TGG 0.631929 6:-39258233 MsG0680032360.01.T01:CDS
CTCCCATAAGACTCATCTGT+AGG 0.632161 6:+39255914 None:intergenic
GCAAGTTGATCAATCTCAAG+TGG 0.635084 6:-39257461 MsG0680032360.01.T01:CDS
GAATTGTGAAGTGGCGAATG+GGG 0.636013 6:-39258224 MsG0680032360.01.T01:CDS
CAGAAATGATCAAGCCGTGG+TGG 0.638681 6:-39255340 MsG0680032360.01.T01:CDS
GCACGTTGTCCATAGGTAAG+GGG 0.644942 6:+39255296 None:intergenic
CAAATGTGAGACCAAGACAA+AGG 0.650717 6:-39257317 MsG0680032360.01.T01:CDS
GGGAGCCGCGATATCATCAG+AGG 0.669793 6:+39255827 None:intergenic
CTTCAGAAATGATCAAGCCG+TGG 0.670695 6:-39255343 MsG0680032360.01.T01:intron
CAATAACAGAGTAAGGTACA+CGG 0.673495 6:+39255735 None:intergenic
ATTGCAGTGAAAAGAAAATG+GGG 0.673791 6:-39257501 MsG0680032360.01.T01:intron
AATTGTGAAGTGGCGAATGG+GGG 0.680452 6:-39258223 MsG0680032360.01.T01:CDS
CAGTAGCCCCATATCCACCA+CGG 0.710036 6:+39255326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAGTATAAGAAAATA+TGG + Chr6:39258261-39258280 None:intergenic 10.0%
!! TTAATCTTTATAAATCAATT+TGG - Chr6:39256004-39256023 MsG0680032360.01.T01:intron 10.0%
!! TTTGGTTAATTATTTATAAT+TGG - Chr6:39255958-39255977 MsG0680032360.01.T01:CDS 10.0%
!!! ATTGATTTATAAAGATTAAA+TGG + Chr6:39256003-39256022 None:intergenic 10.0%
!! AAAGAACATGTATAAAATAT+TGG + Chr6:39255853-39255872 None:intergenic 15.0%
!! AAGAACATGTATAAAATATT+GGG + Chr6:39255852-39255871 None:intergenic 15.0%
!! AATAAAAATTAACAAGTATG+AGG + Chr6:39255012-39255031 None:intergenic 15.0%
!! TAAATGGTTTGAATAATAAA+TGG + Chr6:39255987-39256006 None:intergenic 15.0%
!!! AAAAATGTGTAAAGAATTTT+CGG - Chr6:39255776-39255795 MsG0680032360.01.T01:CDS 15.0%
!!! AAAGAAAGTATTTATGTTAT+TGG + Chr6:39255324-39255343 None:intergenic 15.0%
!!! TGATTTTTTTTCTTGATTTT+TGG - Chr6:39254498-39254517 MsG0680032360.01.T01:intron 15.0%
!! AAATTAAAATGCAGCAATAA+AGG + Chr6:39256078-39256097 None:intergenic 20.0%
!! AATTAAAATGCAGCAATAAA+GGG + Chr6:39256077-39256096 None:intergenic 20.0%
!! AGAACATGTATAAAATATTG+GGG + Chr6:39255851-39255870 None:intergenic 20.0%
!! ATAGAAAACCAATTCATATT+TGG - Chr6:39256310-39256329 MsG0680032360.01.T01:intron 20.0%
!! CTTATATGTTTGCTTAAATA+TGG - Chr6:39255395-39255414 MsG0680032360.01.T01:intron 20.0%
!! TTAAGTACTATAGAGAATAT+AGG - Chr6:39257513-39257532 MsG0680032360.01.T01:intron 20.0%
!! TTATACTTCATACAATATCT+AGG + Chr6:39258153-39258172 None:intergenic 20.0%
!! TTATTAACACATGAATTCAT+TGG + Chr6:39257363-39257382 None:intergenic 20.0%
!! TTGTTCACATGATATTTAAT+GGG - Chr6:39256694-39256713 MsG0680032360.01.T01:intron 20.0%
!! TTTCATTGCACAAATTATTT+AGG - Chr6:39258028-39258047 MsG0680032360.01.T01:intron 20.0%
!! TTTGCTAACTATAGTTTATT+TGG - Chr6:39254540-39254559 MsG0680032360.01.T01:intron 20.0%
!!! AATGAATGTTTTTAAGATGT+TGG - Chr6:39254598-39254617 MsG0680032360.01.T01:intron 20.0%
!!! CAATTTGCAATGTATTTTAT+GGG + Chr6:39256242-39256261 None:intergenic 20.0%
!!! TAAATACTTTCTTTTTAGCT+AGG - Chr6:39255330-39255349 MsG0680032360.01.T01:CDS 20.0%
!!! TTTAGCTAGGATATTTTTTT+AGG - Chr6:39255343-39255362 MsG0680032360.01.T01:intron 20.0%
!!! TTTATTCTAAGGAATCTTTA+CGG - Chr6:39256190-39256209 MsG0680032360.01.T01:intron 20.0%
!!! TTTTGTTTTGTTTTTGTGTT+TGG - Chr6:39254849-39254868 MsG0680032360.01.T01:CDS 20.0%
! ATAATTTATTCTATCCTGCA+TGG - Chr6:39256772-39256791 MsG0680032360.01.T01:intron 25.0%
! CTTGTTCACATGATATTTAA+TGG - Chr6:39256693-39256712 MsG0680032360.01.T01:intron 25.0%
! TAAAGAAGCAAAAAACCAAA+GGG + Chr6:39258058-39258077 None:intergenic 25.0%
! TAATTTATTCTATCCTGCAT+GGG - Chr6:39256773-39256792 MsG0680032360.01.T01:intron 25.0%
! TATAGTACACGTTTATTCTA+AGG - Chr6:39256179-39256198 MsG0680032360.01.T01:intron 25.0%
! TCATATAGAAACAATGTTGT+GGG + Chr6:39257798-39257817 None:intergenic 25.0%
! TGACATACATTAGATACTAA+AGG + Chr6:39255706-39255725 None:intergenic 25.0%
! TGATCAAAATCTTAGTATGA+AGG - Chr6:39257591-39257610 MsG0680032360.01.T01:intron 25.0%
! TGTATATGCCAAATATGAAT+TGG + Chr6:39256321-39256340 None:intergenic 25.0%
! TGTGCAATGAAAATAGATTT+AGG + Chr6:39258020-39258039 None:intergenic 25.0%
! TTCATATAGAAACAATGTTG+TGG + Chr6:39257799-39257818 None:intergenic 25.0%
!! CTTTATAAATCAATTTGGTG+TGG - Chr6:39256009-39256028 MsG0680032360.01.T01:intron 25.0%
!! GCAATTTGCAATGTATTTTA+TGG + Chr6:39256243-39256262 None:intergenic 25.0%
!! TATGTTGTTATTGTAGACTA+GGG - Chr6:39254699-39254718 MsG0680032360.01.T01:intron 25.0%
!!! AAATTTTGACAACCTGATTA+TGG - Chr6:39257540-39257559 MsG0680032360.01.T01:intron 25.0%
!!! AGGTTTTGGAAAATTTGAAA+AGG - Chr6:39255128-39255147 MsG0680032360.01.T01:intron 25.0%
!!! ATGGATGAAGGTATTATATT+TGG - Chr6:39257313-39257332 MsG0680032360.01.T01:CDS 25.0%
!!! TACATATGAAGTATTGAAAG+TGG + Chr6:39255446-39255465 None:intergenic 25.0%
!!! TGGTTATGTTGATAGTAATT+GGG - Chr6:39254618-39254637 MsG0680032360.01.T01:intron 25.0%
!!! TTGGTTATGTTGATAGTAAT+TGG - Chr6:39254617-39254636 MsG0680032360.01.T01:intron 25.0%
!!! TTTGGTTTTTTGCTTCTTTA+GGG - Chr6:39258058-39258077 MsG0680032360.01.T01:intron 25.0%
!!! TTTGTTTTTGTGTTTGGTTT+AGG - Chr6:39254855-39254874 MsG0680032360.01.T01:CDS 25.0%
AAAATATCAGCATCAGCATT+GGG + Chr6:39254440-39254459 None:intergenic 30.0%
AACCAAAGTAGAAAATGTCA+AGG + Chr6:39255945-39255964 None:intergenic 30.0%
AACCACTACACCTAATAATT+AGG + Chr6:39256268-39256287 None:intergenic 30.0%
AATCAAAATAACATAGCACC+AGG + Chr6:39255375-39255394 None:intergenic 30.0%
AATTATTTAGGCATTCCCTT+TGG - Chr6:39258040-39258059 MsG0680032360.01.T01:intron 30.0%
AGAAACATAACTTTACCGAA+AGG + Chr6:39255751-39255770 None:intergenic 30.0%
ATAAAGCACAAAAGACAATC+AGG + Chr6:39257441-39257460 None:intergenic 30.0%
ATATAATACCTTCATCCATC+TGG + Chr6:39257312-39257331 None:intergenic 30.0%
ATATGGCAATTCATGAACAA+AGG + Chr6:39258244-39258263 None:intergenic 30.0%
ATCATTCTGATTCATGTCTT+TGG - Chr6:39254465-39254484 MsG0680032360.01.T01:intron 30.0%
ATTGCAGTGAAAAGAAAATG+GGG - Chr6:39255055-39255074 MsG0680032360.01.T01:intron 30.0%
ATTTATGTTATTGGTAAGCG+TGG + Chr6:39255315-39255334 None:intergenic 30.0%
CAAATTGCCTCCTAATTATT+AGG - Chr6:39256255-39256274 MsG0680032360.01.T01:intron 30.0%
CATATAGAAACAATGTTGTG+GGG + Chr6:39257797-39257816 None:intergenic 30.0%
CATGTGTTAATAAACTGTCA+AGG - Chr6:39257370-39257389 MsG0680032360.01.T01:CDS 30.0%
CATTGCAGTGAAAAGAAAAT+GGG - Chr6:39255054-39255073 MsG0680032360.01.T01:intron 30.0%
CTAAAGAAGCAAAAAACCAA+AGG + Chr6:39258059-39258078 None:intergenic 30.0%
CTCTTTGCTTGTAAAATACT+GGG + Chr6:39256752-39256771 None:intergenic 30.0%
GAAACATAACTTTACCGAAA+GGG + Chr6:39255750-39255769 None:intergenic 30.0%
GACTAAAGTAGAAAATGTCA+AGG + Chr6:39255820-39255839 None:intergenic 30.0%
GTATGTTCAGATACAATAGT+TGG - Chr6:39255592-39255611 MsG0680032360.01.T01:CDS 30.0%
TACATGTATGACGAACTATA+AGG + Chr6:39257941-39257960 None:intergenic 30.0%
TATAGTTCGTCATACATGTA+CGG - Chr6:39257941-39257960 MsG0680032360.01.T01:intron 30.0%
TATGGCAATTCATGAACAAA+GGG + Chr6:39258243-39258262 None:intergenic 30.0%
TCTCTTTGCTTGTAAAATAC+TGG + Chr6:39256753-39256772 None:intergenic 30.0%
TGTTATTGAGGCTCTTATAT+GGG - Chr6:39256836-39256855 MsG0680032360.01.T01:intron 30.0%
TGTTGAAGTTGAATGTGTAT+TGG - Chr6:39254644-39254663 MsG0680032360.01.T01:intron 30.0%
TTAGTGGAAATCAAAAGTAG+AGG + Chr6:39256466-39256485 None:intergenic 30.0%
TTCTGATCCTGAAAAGTTAA+AGG - Chr6:39254881-39254900 MsG0680032360.01.T01:intron 30.0%
! AACCTTGACATTTTCTACTT+TGG - Chr6:39255815-39255834 MsG0680032360.01.T01:CDS 30.0%
! AACTTTTCTCTAACAAGATG+TGG + Chr6:39257159-39257178 None:intergenic 30.0%
! AATGTATTTTATGGGCAGTT+AGG + Chr6:39256234-39256253 None:intergenic 30.0%
! CTATGTTGTTATTGTAGACT+AGG - Chr6:39254698-39254717 MsG0680032360.01.T01:intron 30.0%
!! ACTATAGTTTATTTGGTGTG+TGG - Chr6:39254547-39254566 MsG0680032360.01.T01:intron 30.0%
!! GAACACTGATTACATTTTGA+AGG - Chr6:39255555-39255574 MsG0680032360.01.T01:CDS 30.0%
!! GATTTTGATCAGTTGATTGT+TGG + Chr6:39257582-39257601 None:intergenic 30.0%
!! TAAGAGAGGCTAAGTTTTAT+AGG + Chr6:39256418-39256437 None:intergenic 30.0%
!!! CTTTGGTTTTTTGCTTCTTT+AGG - Chr6:39258057-39258076 MsG0680032360.01.T01:intron 30.0%
!!! GATTACATTTTGAAGGTACT+TGG - Chr6:39255562-39255581 MsG0680032360.01.T01:CDS 30.0%
!!! TATTTTTTTAGGTGTCATCC+TGG - Chr6:39255354-39255373 MsG0680032360.01.T01:intron 30.0%
AAATCAAAAGTAGAGGAACG+TGG + Chr6:39256459-39256478 None:intergenic 35.0%
AATCAAAAGTAGAGGAACGT+GGG + Chr6:39256458-39256477 None:intergenic 35.0%
AATCCAACAAAAGCAACCTA+GGG + Chr6:39256585-39256604 None:intergenic 35.0%
ACAAAAGACAATCAGGAGTA+AGG + Chr6:39257434-39257453 None:intergenic 35.0%
ACATGTACGGAAAACTATTG+AGG - Chr6:39257954-39257973 MsG0680032360.01.T01:intron 35.0%
ACGAACTATAAGGAAGGAAA+AGG + Chr6:39257931-39257950 None:intergenic 35.0%
ACTTACCAGTAATCATCAAC+TGG + Chr6:39257753-39257772 None:intergenic 35.0%
AGAATAGAGCAGAGAGATAA+AGG + Chr6:39256668-39256687 None:intergenic 35.0%
ATCATAGCATGACTGTCTAT+TGG + Chr6:39258085-39258104 None:intergenic 35.0%
ATCTCTCTGCTCTATTCTTT+GGG - Chr6:39256670-39256689 MsG0680032360.01.T01:intron 35.0%
ATCTCTTTCACTATTGTGTC+AGG - Chr6:39255420-39255439 MsG0680032360.01.T01:intron 35.0%
ATGAATTTACTGCTTCCAGA+TGG - Chr6:39257294-39257313 MsG0680032360.01.T01:CDS 35.0%
ATGGCAATTCATGAACAAAG+GGG + Chr6:39258242-39258261 None:intergenic 35.0%
ATGGTTCTTGCCAATACATT+TGG - Chr6:39257068-39257087 MsG0680032360.01.T01:intron 35.0%
CAAAATATCAGCATCAGCAT+TGG + Chr6:39254441-39254460 None:intergenic 35.0%
CAAAGAAAGAGAGTTACAAC+AGG - Chr6:39255646-39255665 MsG0680032360.01.T01:CDS 35.0%
CAAGAAAGAGAAGACACAAA+TGG + Chr6:39256381-39256400 None:intergenic 35.0%
CAATAACAGAGTAAGGTACA+CGG + Chr6:39256824-39256843 None:intergenic 35.0%
CACACAATCCTAGTAATTCT+TGG + Chr6:39254928-39254947 None:intergenic 35.0%
CACTACACCTAATAATTAGG+AGG + Chr6:39256265-39256284 None:intergenic 35.0%
CAGCATTGCTGTAAGTTATT+TGG - Chr6:39257181-39257200 MsG0680032360.01.T01:intron 35.0%
CATAGGAAAATGAGAGTTAG+TGG + Chr6:39256482-39256501 None:intergenic 35.0%
CGAACTATAAGGAAGGAAAA+GGG + Chr6:39257930-39257949 None:intergenic 35.0%
CTCCTAATTATTAGGTGTAG+TGG - Chr6:39256263-39256282 MsG0680032360.01.T01:intron 35.0%
CTGTTATTGAGGCTCTTATA+TGG - Chr6:39256835-39256854 MsG0680032360.01.T01:intron 35.0%
CTGTTGTAACTCTCTTTCTT+TGG + Chr6:39255648-39255667 None:intergenic 35.0%
GATATTTGGCATATAGCACT+CGG + Chr6:39258220-39258239 None:intergenic 35.0%
GCATTGCAGTGAAAAGAAAA+TGG - Chr6:39255053-39255072 MsG0680032360.01.T01:intron 35.0%
GCTGTTGTATATTACAGTGT+TGG - Chr6:39256861-39256880 MsG0680032360.01.T01:intron 35.0%
GGAGGATTTATTGTACCTAA+AGG - Chr6:39257122-39257141 MsG0680032360.01.T01:intron 35.0%
GTTCAGTGAGATAATAAGAG+AGG + Chr6:39256432-39256451 None:intergenic 35.0%
TAACAAACCAACCTTTGTCT+TGG + Chr6:39255253-39255272 None:intergenic 35.0%
TAGACAGTCATGCTATGATA+TGG - Chr6:39258086-39258105 MsG0680032360.01.T01:intron 35.0%
TATCTCTCTGCTCTATTCTT+TGG - Chr6:39256669-39256688 MsG0680032360.01.T01:intron 35.0%
TCAATGAAGTCTCCATAATC+AGG + Chr6:39257555-39257574 None:intergenic 35.0%
TCATGAACAAAGGGGATATT+TGG + Chr6:39258234-39258253 None:intergenic 35.0%
TCATGTGTCCAAGAATTACT+AGG - Chr6:39254917-39254936 MsG0680032360.01.T01:intron 35.0%
TGTACCTTACTCTGTTATTG+AGG - Chr6:39256824-39256843 MsG0680032360.01.T01:intron 35.0%
TGTATGACGAACTATAAGGA+AGG + Chr6:39257937-39257956 None:intergenic 35.0%
TTTATGCGTGGTCAAAACTT+AGG - Chr6:39257456-39257475 MsG0680032360.01.T01:CDS 35.0%
TTTCTTGGAAAACGAATTGC+TGG - Chr6:39255183-39255202 MsG0680032360.01.T01:intron 35.0%
! AAATGGCATTAGGTCTTTTC+GGG - Chr6:39257021-39257040 MsG0680032360.01.T01:intron 35.0%
! ACTTTTTGTAGTGCACCAAA+TGG - Chr6:39257004-39257023 MsG0680032360.01.T01:intron 35.0%
! ATCCTACAGATGAGTCTTAT+GGG - Chr6:39256640-39256659 MsG0680032360.01.T01:intron 35.0%
! ATTCGTTTTCCAAGAAACCA+TGG + Chr6:39255180-39255199 None:intergenic 35.0%
! CAAATGGCATTAGGTCTTTT+CGG - Chr6:39257020-39257039 MsG0680032360.01.T01:intron 35.0%
! CAATGCTGATGCTGATATTT+TGG - Chr6:39254439-39254458 MsG0680032360.01.T01:intron 35.0%
! TGTGTAAAGAATTTTCGGTG+AGG - Chr6:39255781-39255800 MsG0680032360.01.T01:CDS 35.0%
!! ACTGCTGATTATTTTCTTGC+TGG - Chr6:39257100-39257119 MsG0680032360.01.T01:intron 35.0%
!! ATCTACCAGTTGATGATTAC+TGG - Chr6:39257745-39257764 MsG0680032360.01.T01:intron 35.0%
!! ATTTGGTGTGTGGTTTAACT+GGG - Chr6:39254557-39254576 MsG0680032360.01.T01:intron 35.0%
!! CTGCTGATTATTTTCTTGCT+GGG - Chr6:39257101-39257120 MsG0680032360.01.T01:intron 35.0%
!! GCTGATTCCTTTAACTTTTC+AGG + Chr6:39254891-39254910 None:intergenic 35.0%
!! TATTTGGTGTGTGGTTTAAC+TGG - Chr6:39254556-39254575 MsG0680032360.01.T01:intron 35.0%
!! TGATTCATGTCTTTGGTGTT+GGG - Chr6:39254472-39254491 MsG0680032360.01.T01:intron 35.0%
AAACACTTCTTGACCTCTCT+GGG + Chr6:39257870-39257889 None:intergenic 40.0%
AAAGATACCTTCCTGCTACA+GGG + Chr6:39256893-39256912 None:intergenic 40.0%
AACAGAGGATGCATATACAG+GGG + Chr6:39255515-39255534 None:intergenic 40.0%
AATGTTGTGGGGAAATCTCA+CGG + Chr6:39257786-39257805 None:intergenic 40.0%
AGACACAAATGGTCATGGAT+CGG + Chr6:39256370-39256389 None:intergenic 40.0%
AGAGAAGACACAAATGGTCA+TGG + Chr6:39256375-39256394 None:intergenic 40.0%
AGAGCCTCAATAACAGAGTA+AGG + Chr6:39256831-39256850 None:intergenic 40.0%
ATCCAACAAAAGCAACCTAG+GGG + Chr6:39256584-39256603 None:intergenic 40.0%
ATTTATCTTACTCCCCAGAG+AGG - Chr6:39257854-39257873 MsG0680032360.01.T01:intron 40.0%
CAAATGTGAGACCAAGACAA+AGG - Chr6:39255239-39255258 MsG0680032360.01.T01:intron 40.0%
CAACAGAGGATGCATATACA+GGG + Chr6:39255516-39255535 None:intergenic 40.0%
CATCCTACAGATGAGTCTTA+TGG - Chr6:39256639-39256658 MsG0680032360.01.T01:intron 40.0%
CGAAAAGACCTAATGCCATT+TGG + Chr6:39257022-39257041 None:intergenic 40.0%
CGTGGAATGACATGAAGATT+TGG + Chr6:39255297-39255316 None:intergenic 40.0%
CTATAAGGAAGGAAAAGGGT+AGG + Chr6:39257926-39257945 None:intergenic 40.0%
CTGTATATGCATCCTCTGTT+GGG - Chr6:39255515-39255534 MsG0680032360.01.T01:CDS 40.0%
GAATCCAACAAAAGCAACCT+AGG + Chr6:39256586-39256605 None:intergenic 40.0%
GGTACACTTTCTTTCCCTTT+CGG - Chr6:39255733-39255752 MsG0680032360.01.T01:CDS 40.0%
GTACAATATTCCTGCGAACA+AGG - Chr6:39256613-39256632 MsG0680032360.01.T01:intron 40.0%
GTCATGAGAGTTAGTGACAT+AGG + Chr6:39256499-39256518 None:intergenic 40.0%
TAAACACTTCTTGACCTCTC+TGG + Chr6:39257871-39257890 None:intergenic 40.0%
TAAAGATACCTTCCTGCTAC+AGG + Chr6:39256894-39256913 None:intergenic 40.0%
TATTTGATCATGTTGCCCCT+AGG - Chr6:39256566-39256585 MsG0680032360.01.T01:intron 40.0%
TCATCAACAAGCTTCGACAA+CGG + Chr6:39254297-39254316 None:intergenic 40.0%
TCTAATGTATGTCACTGTCC+CGG - Chr6:39255712-39255731 MsG0680032360.01.T01:CDS 40.0%
TGAATTGTGAAGTGGCGAAT+GGG - Chr6:39254331-39254350 MsG0680032360.01.T01:intron 40.0%
TGAGAAGCTGAATTGTGAAG+TGG - Chr6:39254323-39254342 MsG0680032360.01.T01:intron 40.0%
TGGCAGAAAATCAAGCAGTT+AGG + Chr6:39257343-39257362 None:intergenic 40.0%
TGTAATTGCACGTTGTCCAT+AGG + Chr6:39257270-39257289 None:intergenic 40.0%
TGTATATGCATCCTCTGTTG+GGG - Chr6:39255516-39255535 MsG0680032360.01.T01:CDS 40.0%
TGTCTGCAGAAATCAGCAAT+TGG - Chr6:39257684-39257703 MsG0680032360.01.T01:intron 40.0%
TTAGGTGTAGTGGTTATGCT+TGG - Chr6:39256273-39256292 MsG0680032360.01.T01:intron 40.0%
! AAAGGGAAAGAAAGTGTACC+GGG + Chr6:39255733-39255752 None:intergenic 40.0%
! CATTGTTTGCTTGTTGCTGA+TGG - Chr6:39254670-39254689 MsG0680032360.01.T01:intron 40.0%
! CTGATTATTTTCTTGCTGGG+AGG - Chr6:39257104-39257123 MsG0680032360.01.T01:intron 40.0%
! CTGATTCATGTCTTTGGTGT+TGG - Chr6:39254471-39254490 MsG0680032360.01.T01:intron 40.0%
! CTGGTAGATTGTTTGAAACG+AGG + Chr6:39257734-39257753 None:intergenic 40.0%
! CTTTACGGCACACATCATTT+TGG - Chr6:39256205-39256224 MsG0680032360.01.T01:intron 40.0%
! GAAAGGGAAAGAAAGTGTAC+CGG + Chr6:39255734-39255753 None:intergenic 40.0%
! GCAATTGGTAACAACACAGT+AGG - Chr6:39257699-39257718 MsG0680032360.01.T01:intron 40.0%
! GTTGTTATTGTAGACTAGGG+AGG - Chr6:39254702-39254721 MsG0680032360.01.T01:intron 40.0%
! TGTCTTTTGTGCTTTATGCG+TGG - Chr6:39257444-39257463 MsG0680032360.01.T01:CDS 40.0%
! TTGCTATTCAACGCACTTGT+CGG - Chr6:39254758-39254777 MsG0680032360.01.T01:intron 40.0%
!! AGTTGGTAACGAAATGACCA+GGG - Chr6:39255609-39255628 MsG0680032360.01.T01:CDS 40.0%
!! ATTAGGTCTTTTCGGGATGA+TGG - Chr6:39257028-39257047 MsG0680032360.01.T01:intron 40.0%
!! ATTTGAAAAGGTGCTTCAGC+CGG - Chr6:39255140-39255159 MsG0680032360.01.T01:intron 40.0%
!! GCAAGTTGATCAATCTCAAG+TGG - Chr6:39255095-39255114 MsG0680032360.01.T01:intron 40.0%
!! TAGTTGGTAACGAAATGACC+AGG - Chr6:39255608-39255627 MsG0680032360.01.T01:CDS 40.0%
AACACTTCTTGACCTCTCTG+GGG + Chr6:39257869-39257888 None:intergenic 45.0%
AAGATACCTTCCTGCTACAG+GGG + Chr6:39256892-39256911 None:intergenic 45.0%
AATTGTGAAGTGGCGAATGG+GGG - Chr6:39254333-39254352 MsG0680032360.01.T01:intron 45.0%
ACAGAGGATGCATATACAGG+GGG + Chr6:39255514-39255533 None:intergenic 45.0%
AGCTCTCCTCGAACAGATTT+CGG + Chr6:39254739-39254758 None:intergenic 45.0%
AGCTTCCTCTGATGATATCG+CGG - Chr6:39256724-39256743 MsG0680032360.01.T01:intron 45.0%
CAAGAAACCATGGCATGCAA+TGG + Chr6:39255170-39255189 None:intergenic 45.0%
CACGGCTTGATCATTTCTGA+AGG + Chr6:39257215-39257234 None:intergenic 45.0%
CACTCTTCGGCTACAACAAT+TGG - Chr6:39255212-39255231 MsG0680032360.01.T01:intron 45.0%
CATTGCATGCCATGGTTTCT+TGG - Chr6:39255168-39255187 MsG0680032360.01.T01:intron 45.0%
CCAACAGAGGATGCATATAC+AGG + Chr6:39255517-39255536 None:intergenic 45.0%
CCTGTATATGCATCCTCTGT+TGG - Chr6:39255514-39255533 MsG0680032360.01.T01:CDS 45.0%
CTCCCATAAGACTCATCTGT+AGG + Chr6:39256645-39256664 None:intergenic 45.0%
CTGAATTGTGAAGTGGCGAA+TGG - Chr6:39254330-39254349 MsG0680032360.01.T01:intron 45.0%
CTTCAGAAATGATCAAGCCG+TGG - Chr6:39257213-39257232 MsG0680032360.01.T01:intron 45.0%
GAATTGTGAAGTGGCGAATG+GGG - Chr6:39254332-39254351 MsG0680032360.01.T01:intron 45.0%
GGAAGGGGTTAATTCAGCTT+TGG - Chr6:39254367-39254386 MsG0680032360.01.T01:intron 45.0%
GTAGTGCACCAAATGGCATT+AGG - Chr6:39257011-39257030 MsG0680032360.01.T01:intron 45.0%
GTATATGCATCCTCTGTTGG+GGG - Chr6:39255517-39255536 MsG0680032360.01.T01:CDS 45.0%
GTGGATCTGTGCTTACCTTT+AGG + Chr6:39257140-39257159 None:intergenic 45.0%
TACTGCTTCCAGATGGATGA+AGG - Chr6:39257301-39257320 MsG0680032360.01.T01:CDS 45.0%
TAGCACTCGGTAGAGAAACA+TGG + Chr6:39258207-39258226 None:intergenic 45.0%
TATTCTATCCTGCATGGGCA+TGG - Chr6:39256778-39256797 MsG0680032360.01.T01:intron 45.0%
TCTCAAGTGGCTATGAGAGA+AGG - Chr6:39255108-39255127 MsG0680032360.01.T01:intron 45.0%
TGCACGTTGTCCATAGGTAA+GGG + Chr6:39257264-39257283 None:intergenic 45.0%
TGCAGCTGAGCCAAATGTAT+TGG + Chr6:39257081-39257100 None:intergenic 45.0%
TGTGAGACCAAGACAAAGGT+TGG - Chr6:39255243-39255262 MsG0680032360.01.T01:intron 45.0%
TTGCACGTTGTCCATAGGTA+AGG + Chr6:39257265-39257284 None:intergenic 45.0%
TTGCTGGTCATCTCACTCTT+CGG - Chr6:39255199-39255218 MsG0680032360.01.T01:intron 45.0%
TTGTTGCCGAAATCTGTTCG+AGG - Chr6:39254730-39254749 MsG0680032360.01.T01:intron 45.0%
! GATGATGGCTTCTATTGCAC+GGG - Chr6:39257043-39257062 MsG0680032360.01.T01:intron 45.0%
! GGATGATGGCTTCTATTGCA+CGG - Chr6:39257042-39257061 MsG0680032360.01.T01:intron 45.0%
! GTGGCTATGAGAGAAGGTTT+TGG - Chr6:39255114-39255133 MsG0680032360.01.T01:intron 45.0%
!! AAGAGTAGCGTGTTGTTTGC+TGG - Chr6:39254392-39254411 MsG0680032360.01.T01:intron 45.0%
!! AGAGTAGCGTGTTGTTTGCT+GGG - Chr6:39254393-39254412 MsG0680032360.01.T01:intron 45.0%
!! GTTGGTAACGAAATGACCAG+GGG - Chr6:39255610-39255629 MsG0680032360.01.T01:CDS 45.0%
!! TTCATGTCTTTGGTGTTGGG+AGG - Chr6:39254475-39254494 MsG0680032360.01.T01:intron 45.0%
!! TTTGAAAAGGTGCTTCAGCC+GGG - Chr6:39255141-39255160 MsG0680032360.01.T01:intron 45.0%
!!! TTATATTATTAAATTAGTTT+TGG - Chr6:39256125-39256144 MsG0680032360.01.T01:intron 5.0%
AACTCTCTTTCTTTGGCCCC+CGG + Chr6:39255641-39255660 None:intergenic 50.0%
AGGTACACGGAGAATCCAAC+TGG + Chr6:39256811-39256830 None:intergenic 50.0%
CAGAAATGATCAAGCCGTGG+TGG - Chr6:39257216-39257235 MsG0680032360.01.T01:intron 50.0%
GCACGTTGTCCATAGGTAAG+GGG + Chr6:39257263-39257282 None:intergenic 50.0%
GGCTTCTATTGCACGGGATA+TGG - Chr6:39257049-39257068 MsG0680032360.01.T01:intron 50.0%
GTAAAAGACCATGCCCATGC+AGG + Chr6:39256789-39256808 None:intergenic 50.0%
TAGGATGCAACCTTGTTCGC+AGG + Chr6:39256626-39256645 None:intergenic 50.0%
TGGTTGTCACCCCTTACCTA+TGG - Chr6:39257251-39257270 MsG0680032360.01.T01:intron 50.0%
! GGGCATGGTCTTTTACCAGT+TGG - Chr6:39256793-39256812 MsG0680032360.01.T01:intron 50.0%
!! ATCAAGCCGTGGTGGATATG+GGG - Chr6:39257224-39257243 MsG0680032360.01.T01:intron 50.0%
!! GATCAAGCCGTGGTGGATAT+GGG - Chr6:39257223-39257242 MsG0680032360.01.T01:intron 50.0%
!! GTGCTTTTTACCCCCAACAG+AGG + Chr6:39255530-39255549 None:intergenic 50.0%
!! TGATCAAGCCGTGGTGGATA+TGG - Chr6:39257222-39257241 MsG0680032360.01.T01:intron 50.0%
!!! TGCCCCTAGGTTGCTTTTGT+TGG - Chr6:39256579-39256598 MsG0680032360.01.T01:intron 50.0%
AAATGACCAGGGGAGTCTCC+GGG - Chr6:39255620-39255639 MsG0680032360.01.T01:CDS 55.0%
CAGTAGCCCCATATCCACCA+CGG + Chr6:39257233-39257252 None:intergenic 55.0%
CATGGCATGCAATGGCATCC+CGG + Chr6:39255162-39255181 None:intergenic 55.0%
CGAATGGGGGATTGTGTTGG+CGG - Chr6:39254346-39254365 MsG0680032360.01.T01:intron 55.0%
GAAATGACCAGGGGAGTCTC+CGG - Chr6:39255619-39255638 MsG0680032360.01.T01:CDS 55.0%
GATTTGCCCCTGTAGCAGGA+AGG - Chr6:39256883-39256902 MsG0680032360.01.T01:intron 55.0%
GCTGGGCAGAGGATGATGTA+CGG - Chr6:39254410-39254429 MsG0680032360.01.T01:intron 55.0%
GTTGGATTTGCCCCTGTAGC+AGG - Chr6:39256879-39256898 MsG0680032360.01.T01:intron 55.0%
TGGCGAATGGGGGATTGTGT+TGG - Chr6:39254343-39254362 MsG0680032360.01.T01:intron 55.0%
AATGACCAGGGGAGTCTCCG+GGG - Chr6:39255621-39255640 MsG0680032360.01.T01:CDS 60.0%
CGGGATGCCATTGCATGCCA+TGG - Chr6:39255160-39255179 MsG0680032360.01.T01:intron 60.0%
GGGAGCCGCGATATCATCAG+AGG + Chr6:39256732-39256751 None:intergenic 60.0%
! GGGGATTGTGTTGGCGGAAG+GGG - Chr6:39254352-39254371 MsG0680032360.01.T01:intron 60.0%
! GGGGGATTGTGTTGGCGGAA+GGG - Chr6:39254351-39254370 MsG0680032360.01.T01:intron 60.0%
! TGGGGGATTGTGTTGGCGGA+AGG - Chr6:39254350-39254369 MsG0680032360.01.T01:intron 60.0%
!! CGTGGTGGATATGGGGCTAC+TGG - Chr6:39257231-39257250 MsG0680032360.01.T01:intron 60.0%
!! GCGTGTTGTTTGCTGGGCAG+AGG - Chr6:39254399-39254418 MsG0680032360.01.T01:intron 60.0%
ATGACCAGGGGAGTCTCCGG+GGG - Chr6:39255622-39255641 MsG0680032360.01.T01:CDS 65.0%
TTGGCCCCCGGAGACTCCCC+TGG + Chr6:39255629-39255648 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 39254276 39258302 39254276 ID=MsG0680032360.01;Name=MsG0680032360.01
Chr6 mRNA 39254276 39258302 39254276 ID=MsG0680032360.01.T01;Parent=MsG0680032360.01;Name=MsG0680032360.01.T01;_AED=0.49;_eAED=0.64;_QI=0|0.4|0.33|1|0.8|0.66|6|0|358
Chr6 exon 39258205 39258302 39258205 ID=MsG0680032360.01.T01:exon:21372;Parent=MsG0680032360.01.T01
Chr6 exon 39257273 39257516 39257273 ID=MsG0680032360.01.T01:exon:21371;Parent=MsG0680032360.01.T01
Chr6 exon 39255435 39255990 39255435 ID=MsG0680032360.01.T01:exon:21370;Parent=MsG0680032360.01.T01
Chr6 exon 39255256 39255359 39255256 ID=MsG0680032360.01.T01:exon:21369;Parent=MsG0680032360.01.T01
Chr6 exon 39254812 39254885 39254812 ID=MsG0680032360.01.T01:exon:21368;Parent=MsG0680032360.01.T01
Chr6 exon 39254276 39254276 39254276 ID=MsG0680032360.01.T01:exon:21367;Parent=MsG0680032360.01.T01
Chr6 CDS 39258205 39258302 39258205 ID=MsG0680032360.01.T01:cds;Parent=MsG0680032360.01.T01
Chr6 CDS 39257273 39257516 39257273 ID=MsG0680032360.01.T01:cds;Parent=MsG0680032360.01.T01
Chr6 CDS 39255435 39255990 39255435 ID=MsG0680032360.01.T01:cds;Parent=MsG0680032360.01.T01
Chr6 CDS 39255256 39255359 39255256 ID=MsG0680032360.01.T01:cds;Parent=MsG0680032360.01.T01
Chr6 CDS 39254812 39254885 39254812 ID=MsG0680032360.01.T01:cds;Parent=MsG0680032360.01.T01
Chr6 CDS 39254276 39254276 39254276 ID=MsG0680032360.01.T01:cds;Parent=MsG0680032360.01.T01
Gene Sequence

>MsG0680032360.01.T01

ATGGAGGAGAGTCAGCTTCCGTTGTCGAAGCTTGTTGATGAGATTTATGAGAAGCTGAATTGTGAAGTGGCGAATGGGGGATTGTGTTGGCGGAAGGGTGAAAAGAAAATGGGGAATCTTATGTGTTGTGTGCAAGTTGATCAATCTCAAGTGGCTATGAGAGAAGGTTTTGGAAAATTTGAAAAGGTGCTTCAGCCGGGATGCCATTGCATGCCATGGTTTCTTGGAAAACGAATTGCTGGTCATCTCACTCTTCGGCTACAACAATTGGATATCAAATGTGAGACCAAGACAAAGGTTGGTTTGTTACTGTCTCAAACATCAATTAAACCAAATCTTCATGTTGCTTTTGTTGGATTCGTCACATGTACAATATTCCTGCGAACAAGGTTGCATCCTACAGATGAGTCTTATGGGAGCCTTTATCTCTCTGCTCTATTCTTTGGGCTTGTTCACATGATATTTAATGGGTTTTCTGAGCTTCCTCTGATGATATCGCGGCTCCCAGTATTTTACAAGCAAAGAGATAATTTATTCTATCCTGCATGGGCATGGTCTTTTACCAGTTGGATTCTCCGTGTACCTTACTCTGTTATTGAGGCTCTTATATGGGCTGCTGTTGTATATTACAGTGTTGGATTTGCCCCTGTAGCAGGAAGGTATCTTTATTTTATTGCATTTTTCTGTTCAAAGTATTCTTTTATACGTTCTATGTCATTGCTTTTTGTTAAATGTCAGTTTTTTCGCTACATGTTTATACTTTTTGTAGTGCACCAAATGGCATTAGGTCTTTTCGGGATGATGGCTTCTATTGCACGGGATATGGTTCTTGCCAATACATTTGGCTCAGCTGCACTGCTGATTATTTTCTTGCTGGGAGGATTTATTGTACCTAAAGAAATGATCAAGCCGTGGTGGATATGGGGCTACTGGTTGTCACCCCTTACCTATGGACAACGTGCAATTACAGTTAATGAATTTACTGCTTCCAGATGGATGAAGAAATCAGCAATTGGTAACAACACAGTAGGTTACAACATCCTCGTTTCAAACAATCTACCAGTTGATGATTACTGA
Protein sequence

>MsG0680032360.01.T01

MEESQLPLSKLVDEIYEKLNCEVANGGLCWRKGEKKMGNLMCCVQVDQSQVAMREGFGKFEKVLQPGCHCMPWFLGKRIAGHLTLRLQQLDIKCETKTKVGLLLSQTSIKPNLHVAFVGFVTCTIFLRTRLHPTDESYGSLYLSALFFGLVHMIFNGFSELPLMISRLPVFYKQRDNLFYPAWAWSFTSWILRVPYSVIEALIWAAVVYYSVGFAPVAGRYLYFIAFFCSKYSFIRSMSLLFVKCQFFRYMFILFVVHQMALGLFGMMASIARDMVLANTFGSAALLIIFLLGGFIVPKEMIKPWWIWGYWLSPLTYGQRAITVNEFTASRWMKKSAIGNNTVGYNILVSNNLPVDDY*