AlfalfaGEDB | MsG0680030561.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030561.01

KEGG: -
GO: -
PFAM: PF00254

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030561.01.T01	AES72516.1	88.281	128	15	0	66	193	203	330	1.16E-67	229

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030561.01.T01	Q38931	58.824	85	33	2	9	93	293	375	8.16E-20	89.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030561.01.T01	G7J7F4	88.281	128	15	0	66	193	203	330	3.54e-67	229

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0680030561.01	0.809308	2.018100e-50	1.180766e-47
MsG0080048231.01	MsG0680030561.01	0.812986	3.216280e-51	2.074714e-48
MsG0080048874.01	MsG0680030561.01	0.814257	1.689314e-51	1.127976e-48
MsG0180000065.01	MsG0680030561.01	0.802181	6.337369e-49	3.084016e-46
MsG0180000091.01	MsG0680030561.01	0.801420	9.081605e-49	4.335025e-46
MsG0180000470.01	MsG0680030561.01	0.822060	2.899447e-53	2.400589e-50
MsG0180000475.01	MsG0680030561.01	0.816196	6.263341e-52	4.408981e-49
MsG0180000555.01	MsG0680030561.01	0.800767	1.235214e-48	5.799422e-46
MsG0180000585.01	MsG0680030561.01	0.807007	6.236752e-50	3.435080e-47
MsG0180000680.01	MsG0680030561.01	0.817113	3.902068e-52	2.816472e-49

Showing 1 to 10 of 214 entries

Previous1 2 3 4 5…22Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030561.01.T01	MTR_3g091650	88.281	128	15	0	66	193	203	330	1.40e-71	229
MsG0680030561.01.T01	MTR_3g091650	88.281	128	15	0	66	193	203	330	8.97e-71	229
MsG0680030561.01.T01	MTR_8g012340	60.000	105	37	3	9	113	294	393	1.18e-28	112
MsG0680030561.01.T01	MTR_8g011560	54.630	108	41	3	9	113	26	128	2.76e-25	98.6
MsG0680030561.01.T01	MTR_8g010620	54.717	106	42	3	9	113	96	196	3.46e-24	97.1
MsG0680030561.01.T01	MTR_8g011100	55.660	106	41	3	9	113	210	310	8.49e-24	97.4
MsG0680030561.01.T01	MTR_8g010620	54.717	106	42	3	9	113	163	263	9.04e-24	97.1
MsG0680030561.01.T01	MTR_8g010620	54.717	106	42	3	9	113	224	324	1.18e-23	97.4
MsG0680030561.01.T01	MTR_8g010620	54.717	106	42	3	9	113	199	299	1.20e-23	97.1
MsG0680030561.01.T01	MTR_7g053470	51.852	108	45	4	9	116	288	388	1.11e-21	92.0

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030561.01.T01	AT3G25230	58.824	85	33	2	9	93	293	375	8.32e-21	89.7
MsG0680030561.01.T01	AT3G25230	58.824	85	33	2	9	93	293	375	1.00e-20	89.4
MsG0680030561.01.T01	AT5G48570	48.624	109	49	4	9	116	302	404	7.43e-18	81.3
MsG0680030561.01.T01	AT5G53020	39.844	128	56	4	66	191	161	269	6.84e-16	75.5
MsG0680030561.01.T01	AT5G53020	39.844	128	56	4	66	191	161	269	6.84e-16	75.5
MsG0680030561.01.T01	AT5G53020	39.844	128	56	4	66	191	161	269	6.91e-16	75.5
MsG0680030561.01.T01	AT5G53020	39.844	128	56	4	66	191	161	269	6.91e-16	75.5
MsG0680030561.01.T01	AT5G53020	39.844	128	56	4	66	191	161	269	6.91e-16	75.5
MsG0680030561.01.T01	AT5G53020	39.844	128	56	4	66	191	161	269	6.91e-16	75.5
MsG0680030561.01.T01	AT5G53020	39.844	128	56	4	66	191	161	269	6.91e-16	75.5

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 26 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAATGCTGTTGAAAG+AGG	0.523700	6:-5293943	MsG0680030561.01.T01:CDS
AAATGGAGAGAAGCTTCAGA+AGG	0.605319	6:-5293873	MsG0680030561.01.T01:CDS
AATGACCATGAAGAAGGGTG+AGG	0.610564	6:-5294509	MsG0680030561.01.T01:CDS
AGACATCTTGCGACAGAACT+CGG	0.491610	6:-5294149	MsG0680030561.01.T01:CDS
AGCTGTAATGACCATGAAGA+AGG	0.522299	6:-5294515	MsG0680030561.01.T01:CDS
ATCTTTGCAGTGAAAGTAAT+TGG	0.273802	6:-5294761	MsG0680030561.01.T01:intron
CAAAGAGGAGTCTGATTTGA+TGG	0.372221	6:-5294069	MsG0680030561.01.T01:CDS
CGGTCGCACTGTTATGCATT+TGG	0.321613	6:-5294129	MsG0680030561.01.T01:CDS
GAAAGAGGTTAAGTTATCAA+AGG	0.511514	6:-5293928	MsG0680030561.01.T01:CDS
GAGCAGAGCAAGTGATTGAT+GGG	0.549453	6:-5294546	MsG0680030561.01.T01:intron

Showing 1 to 10 of 26 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAACATTCTTCTGATCTC+AGG	-	Chr6:5294667-5294686	MsG0680030561.01.T01:intron	30.0%
ACAAAGCAACAAAATCAAAG+AGG	+	Chr6:5293892-5293911	None:intergenic	30.0%
AGAAGAATGTTATTGACCAT+AGG	+	Chr6:5294661-5294680	None:intergenic	30.0%
ATCATCATTGATGCTAATGA+AGG	-	Chr6:5294033-5294052	MsG0680030561.01.T01:CDS	30.0%
ATCTTTGCAGTGAAAGTAAT+TGG	-	Chr6:5294117-5294136	MsG0680030561.01.T01:CDS	30.0%
CTTCTTGTCATCAATTACTT+CGG	+	Chr6:5293943-5293962	None:intergenic	30.0%
GAAAGAGGTTAAGTTATCAA+AGG	-	Chr6:5294950-5294969	MsG0680030561.01.T01:intron	30.0%
GCTAAGATAAGCAAAATTTC+AGG	-	Chr6:5293830-5293849	MsG0680030561.01.T01:CDS	30.0%
TACTTTGACAATTTGTGTGT+TGG	-	Chr6:5294617-5294636	MsG0680030561.01.T01:intron	30.0%
TGCAAAATTTCACAAGGATT+TGG	-	Chr6:5294854-5294873	MsG0680030561.01.T01:intron	30.0%

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	5293821	5295079	5293821	ID=MsG0680030561.01;Name=MsG0680030561.01
Chr6	mRNA	5293821	5295079	5293821	ID=MsG0680030561.01.T01;Parent=MsG0680030561.01;Name=MsG0680030561.01.T01;_AED=0.35;_eAED=0.36;_QI=0\|0.77\|0.8\|1\|0.33\|0.3\|10\|0\|196
Chr6	exon	5293821	5294211	5293821	ID=MsG0680030561.01.T01:exon:4372;Parent=MsG0680030561.01.T01
Chr6	exon	5294490	5294562	5294490	ID=MsG0680030561.01.T01:exon:4371;Parent=MsG0680030561.01.T01
Chr6	exon	5294678	5294773	5294678	ID=MsG0680030561.01.T01:exon:4370;Parent=MsG0680030561.01.T01
Chr6	exon	5295049	5295079	5295049	ID=MsG0680030561.01.T01:exon:4369;Parent=MsG0680030561.01.T01
Chr6	CDS	5295049	5295079	5295049	ID=MsG0680030561.01.T01:cds;Parent=MsG0680030561.01.T01
Chr6	CDS	5294678	5294773	5294678	ID=MsG0680030561.01.T01:cds;Parent=MsG0680030561.01.T01
Chr6	CDS	5294490	5294562	5294490	ID=MsG0680030561.01.T01:cds;Parent=MsG0680030561.01.T01
Chr6	CDS	5293821	5294211	5293821	ID=MsG0680030561.01.T01:cds;Parent=MsG0680030561.01.T01

Gene Sequence

>MsG0680030561.01.T01

ATGCAAGGTGCTAAGATAAGCAAAATTTCAGTGAAAGTAATTGGTAAGTTGCAAGATAGCACTGTATTTTTGAAGAAGGGCCGTGGCGATGATGAAACAGAGCTGTTTGAATTCACAAGAGATGAGGAGCAAGTGATTGATGGGCTCGATAGAGCTGTAATGACCATGAAGAAGGGTGAGGTAGCATTGTTGACTATTGCGAAACACAAAACTGCTTTCATTGAGCTGATTTCAAATCAAAGACATCTTGCGACAGAACTCGGTCGCACTGTTATGCATTTGGATGCTACAAAGGAGGAACTTATTTCTGTCATGGAGAACAAAGAGGAGTCTGATTTGATGGTTCAGAAATTCACTTTGGAGATTGCAAAATTTCACAAGGATTTGGAACAAAAAGATAAAATTTTGTCAGCAATGTTGAAGAAATCTAAATTTGATACTGCAGAAAAGCAAATGCTGTTGAAAGAGGTTAAGTTATCAAAGGTTAGAAGGAAGCATGCTGAGCATGAAACAGAAAAATGGAGAGAAGCTTCAGAAGGAAAACATGACAGACATTGCTTTAAAAACATGTTGATGCACACATTCCTTTAA

Protein sequence

>MsG0680030561.01.T01

MQGAKISKISVKVIGKLQDSTVFLKKGRGDDETELFEFTRDEEQVIDGLDRAVMTMKKGEVALLTIAKHKTAFIELISNQRHLATELGRTVMHLDATKEELISVMENKEESDLMVQKFTLEIAKFHKDLEQKDKILSAMLKKSKFDTAEKQMLLKEVKLSKVRRKHAEHETEKWREASEGKHDRHCFKNMLMHTFL*