AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027719.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027719.01.T01 MTR_5g070320 51.883 239 100 4 61 291 407 638 7.26e-66 226
MsG0580027719.01.T01 MTR_5g070320 98.000 50 1 0 300 349 701 750 6.65e-26 109
MsG0580027719.01.T01 MTR_5g070320 51.883 239 100 4 61 291 120 351 9.65e-66 225
MsG0580027719.01.T01 MTR_5g070320 98.000 50 1 0 300 349 414 463 7.36e-26 109
MsG0580027719.01.T01 MTR_5g070320 51.883 239 100 4 61 291 216 447 1.14e-65 225
MsG0580027719.01.T01 MTR_5g070320 98.000 50 1 0 300 349 510 559 7.32e-26 109
MsG0580027719.01.T01 MTR_3g463680 45.662 219 65 3 185 349 529 747 3.01e-56 198
MsG0580027719.01.T01 MTR_7g080500 91.000 100 9 0 1 100 91 190 3.66e-56 196
MsG0580027719.01.T01 MTR_4g107830 69.524 105 31 1 109 212 1 105 9.34e-46 158
MsG0580027719.01.T01 MTR_4g107810 86.111 72 10 0 106 177 58 129 5.70e-40 144
MsG0580027719.01.T01 MTR_4g107810 93.651 63 4 0 109 171 1 63 6.93e-39 140
MsG0580027719.01.T01 MTR_4g107760 93.651 63 4 0 109 171 1 63 6.93e-39 140
MsG0580027719.01.T01 MTR_4g107720 93.651 63 4 0 109 171 1 63 1.95e-38 139
MsG0580027719.01.T01 MTR_4g107730 92.063 63 5 0 109 171 1 63 8.61e-38 137
MsG0580027719.01.T01 MTR_3g107870 35.616 219 87 3 185 349 528 746 3.81e-35 136
MsG0580027719.01.T01 MTR_4g011640 32.075 212 90 2 192 349 540 751 1.94e-31 125
MsG0580027719.01.T01 MTR_1g050525 31.696 224 96 4 183 349 536 759 1.97e-31 125
MsG0580027719.01.T01 MTR_2g101090 44.037 109 61 0 183 291 519 627 3.00e-31 125
MsG0580027719.01.T01 MTR_7g104100 29.043 303 132 5 106 349 487 765 4.42e-31 124
MsG0580027719.01.T01 MTR_7g098780 49.533 107 54 0 185 291 537 643 1.15e-30 123
MsG0580027719.01.T01 MTR_7g098760 30.317 221 96 4 185 349 524 742 2.67e-30 122
MsG0580027719.01.T01 MTR_4g011630 31.604 212 91 2 192 349 542 753 3.19e-30 122
MsG0580027719.01.T01 MTR_2g102660 32.990 194 76 2 189 328 533 726 2.01e-29 120
MsG0580027719.01.T01 MTR_2g102640 32.474 194 77 2 189 328 533 726 2.74e-29 119
MsG0580027719.01.T01 MTR_7g098890 29.278 263 113 4 126 341 444 680 6.68e-29 118
MsG0580027719.01.T01 MTR_1g011650 47.573 103 54 0 185 287 528 630 8.58e-29 118
MsG0580027719.01.T01 MTR_2g102670 33.333 189 72 3 189 323 515 703 1.83e-28 117
MsG0580027719.01.T01 MTR_8g014360 50.515 97 48 0 195 291 550 646 2.87e-28 116
MsG0580027719.01.T01 MTR_4g011620 31.553 206 87 3 184 335 522 727 2.95e-28 116
MsG0580027719.01.T01 MTR_7g104110 38.125 160 81 2 185 344 540 681 3.35e-28 116
MsG0580027719.01.T01 MTR_7g098750 29.680 219 100 4 185 349 524 742 4.35e-28 115
MsG0580027719.01.T01 MTR_7g098320 36.585 164 78 2 128 291 489 626 4.65e-28 115
MsG0580027719.01.T01 MTR_7g098750 29.680 219 100 4 185 349 524 742 5.67e-28 115
MsG0580027719.01.T01 MTR_7g098740 43.689 103 58 0 189 291 528 630 7.53e-28 115
MsG0580027719.01.T01 MTR_8g014360 50.515 97 48 0 195 291 550 646 8.68e-28 115
MsG0580027719.01.T01 MTR_7g098320 36.145 166 80 2 126 291 487 626 8.97e-28 115
MsG0580027719.01.T01 MTR_7g098370 42.991 107 61 0 185 291 524 630 9.35e-28 115
MsG0580027719.01.T01 MTR_7g098300 44.860 107 59 0 185 291 524 630 9.40e-28 115
MsG0580027719.01.T01 MTR_4g113070 30.045 223 97 4 184 349 511 731 1.12e-27 114
MsG0580027719.01.T01 MTR_7g098750 29.680 219 100 4 185 349 254 472 1.29e-27 114
MsG0580027719.01.T01 MTR_7g104150 44.860 107 59 0 185 291 546 652 1.37e-27 114
MsG0580027719.01.T01 MTR_1g492950 35.329 167 84 1 125 291 515 657 2.60e-27 113
MsG0580027719.01.T01 MTR_4g123850 31.797 217 90 5 183 344 528 741 6.40e-27 112
MsG0580027719.01.T01 MTR_7g098800 42.991 107 61 0 185 291 495 601 8.56e-27 112
MsG0580027719.01.T01 MTR_8g469160 60.870 69 27 0 109 177 1 69 2.67e-26 106
MsG0580027719.01.T01 MTR_7g104130 47.917 96 50 0 196 291 557 652 7.86e-26 109
MsG0580027719.01.T01 MTR_6g011380 69.841 63 19 0 109 171 1 63 1.20e-25 104
MsG0580027719.01.T01 MTR_7g104130 47.917 96 50 0 196 291 557 652 1.28e-25 108
MsG0580027719.01.T01 MTR_1g011640 50.562 89 43 1 203 291 535 622 2.04e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027719.01.T01 AT2G29940 47.489 219 61 3 185 349 538 756 1.06e-56 199
MsG0580027719.01.T01 AT1G59870 46.789 109 58 0 183 291 546 654 1.24e-30 123
MsG0580027719.01.T01 AT1G66950 31.696 224 96 4 183 349 550 773 1.85e-30 123
MsG0580027719.01.T01 AT1G15520 33.810 210 85 3 189 344 535 744 1.33e-29 120
MsG0580027719.01.T01 AT2G36380 30.804 224 98 4 183 349 548 771 3.45e-29 119
MsG0580027719.01.T01 AT2G26910 31.863 204 83 4 184 333 511 712 4.42e-29 119
MsG0580027719.01.T01 AT1G15520 50.485 103 51 0 189 291 535 637 5.59e-28 115
MsG0580027719.01.T01 AT5G62740 71.429 63 18 0 109 171 1 63 6.60e-28 110
MsG0580027719.01.T01 AT3G16340 43.119 109 62 0 183 291 517 625 8.75e-28 115
MsG0580027719.01.T01 AT3G16340 43.119 109 62 0 183 291 522 630 8.92e-28 115
MsG0580027719.01.T01 AT1G69840 60.870 69 27 0 109 177 1 69 2.73e-27 109
MsG0580027719.01.T01 AT1G69840 60.870 69 27 0 109 177 1 69 2.73e-27 109
MsG0580027719.01.T01 AT1G69840 60.870 69 27 0 109 177 1 69 2.73e-27 109
MsG0580027719.01.T01 AT1G69840 60.870 69 27 0 109 177 1 69 2.73e-27 109
MsG0580027719.01.T01 AT1G69840 60.870 69 27 0 109 177 1 69 2.73e-27 109
MsG0580027719.01.T01 AT1G69840 60.870 69 27 0 109 177 1 69 2.73e-27 109
MsG0580027719.01.T01 AT1G69840 60.870 69 27 0 109 177 1 69 2.73e-27 109
MsG0580027719.01.T01 AT3G53480 30.137 219 97 4 185 349 551 767 8.90e-26 109
MsG0580027719.01.T01 AT2G37280 30.317 221 98 5 183 349 514 732 1.71e-25 108
MsG0580027719.01.T01 AT2G37280 30.317 221 98 5 183 349 514 732 2.93e-25 107
MsG0580027719.01.T01 AT2G37280 30.317 221 98 5 183 349 543 761 3.11e-25 107
MsG0580027719.01.T01 AT2G37280 30.317 221 98 5 183 349 356 574 4.62e-25 107
MsG0580027719.01.T01 AT1G15210 43.434 99 56 0 193 291 554 652 2.13e-24 105
MsG0580027719.01.T01 AT1G65470 56.000 100 36 1 1 100 88 179 8.79e-24 103
MsG0580027719.01.T01 AT1G65470 56.000 100 36 1 1 100 88 179 9.43e-24 103
MsG0580027719.01.T01 AT3G01290 60.870 69 27 0 109 177 1 69 5.71e-23 97.4
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 520 728 2.13e-22 99.4
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 511 719 2.29e-22 99.0
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 520 728 2.54e-22 99.0
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 502 710 2.65e-22 99.0
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 458 666 2.68e-22 99.0
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 458 666 2.68e-22 99.0
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 440 648 3.36e-22 98.6
MsG0580027719.01.T01 AT4G15233 30.332 211 91 5 188 344 440 648 3.36e-22 98.6
MsG0580027719.01.T01 AT4G15236 29.384 211 93 4 188 344 518 726 4.15e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 513 718 5.10e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 513 718 5.10e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 513 718 5.10e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 513 718 5.10e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 513 718 5.10e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 516 721 5.25e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 509 714 5.49e-22 98.2
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 506 711 5.80e-22 97.8
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 506 711 5.80e-22 97.8
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 506 711 5.80e-22 97.8
MsG0580027719.01.T01 AT4G15215 30.288 208 89 4 186 339 506 711 5.80e-22 97.8
MsG0580027719.01.T01 AT4G15230 41.509 106 61 1 186 291 519 623 9.64e-20 91.3
MsG0580027719.01.T01 AT4G15230 41.509 106 61 1 186 291 519 623 1.23e-19 90.9
MsG0580027719.01.T01 AT4G15230 41.509 106 61 1 186 291 519 623 1.23e-19 90.9
MsG0580027719.01.T01 AT4G15230 41.509 106 61 1 186 291 440 544 1.63e-19 90.5
MsG0580027719.01.T01 AT3G30842 24.664 223 107 3 181 349 519 734 1.14e-17 85.1

Find 129 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTCTCTGCTCTATTCTT+TGG 0.118064 5:-67212037 MsG0580027719.01.T01:CDS
CAATGCTGATGCTGATATTT+TGG 0.136068 5:-67214266 MsG0580027719.01.T01:CDS
TCTCTTTGCTTGTAAAATAC+TGG 0.205851 5:+67211956 None:intergenic
CGCTTTCAAGGGTTGGATTT+GGG 0.206570 5:+67214613 None:intergenic
TGATCAAGCCGTGGTGGATA+TGG 0.207810 5:-67211481 MsG0580027719.01.T01:CDS
TGCTTATTACAGAGGGGTTT+TGG 0.220658 5:-67214509 MsG0580027719.01.T01:five_prime_UTR
ATCTCTCTGCTCTATTCTTT+GGG 0.237279 5:-67212036 MsG0580027719.01.T01:CDS
ATCATTCTGATTCATGTCTT+TGG 0.248769 5:-67214240 MsG0580027719.01.T01:CDS
GCATTGCAGTGAAAAGAAAA+TGG 0.251403 5:-67213648 MsG0580027719.01.T01:intron
CTTGTTCACATGATATTTAA+TGG 0.257184 5:-67212013 MsG0580027719.01.T01:CDS
CATTGCATGCCATGGTTTCT+TGG 0.290257 5:-67213533 MsG0580027719.01.T01:CDS
CTGTTATTGAGGCTCTTATA+TGG 0.299935 5:-67211871 MsG0580027719.01.T01:CDS
TCGCTTTCAAGGGTTGGATT+TGG 0.300707 5:+67214612 None:intergenic
AGCTCTCCTCGAACAGATTT+CGG 0.316175 5:+67213966 None:intergenic
ATTTGAGCTTGTTTCTCTTC+GGG 0.323228 5:+67214565 None:intergenic
CATCCTACAGATGAGTCTTA+TGG 0.325069 5:-67212067 MsG0580027719.01.T01:CDS
CGTGGTGGTTGCGGCGTTGA+TGG 0.333252 5:-67214449 MsG0580027719.01.T01:exon
AAGAGTAGCGTGTTGTTTGC+TGG 0.336436 5:-67214313 MsG0580027719.01.T01:CDS
AGAATAGAGCAGAGAGATAA+AGG 0.342113 5:+67212041 None:intergenic
CACTCTTCGGCTACAACAAT+TGG 0.343058 5:-67213489 MsG0580027719.01.T01:CDS
ATCTACCAGTTGATGATTAC+TGG 0.347727 5:-67210959 MsG0580027719.01.T01:intron
GGGGATTGTGTTGGCGGAAG+GGG 0.357109 5:-67214353 MsG0580027719.01.T01:CDS
GATTTGAGCTTGTTTCTCTT+CGG 0.359456 5:+67214564 None:intergenic
CTGATTCATGTCTTTGGTGT+TGG 0.362682 5:-67214234 MsG0580027719.01.T01:CDS
GGTGGCGGTGGTTGTGGTGG+AGG 0.370622 5:+67214661 None:intergenic
TTGTTCACATGATATTTAAT+GGG 0.380413 5:-67212012 MsG0580027719.01.T01:CDS
TGAGGTGGTGGCGGTGGTTG+TGG 0.381810 5:+67214655 None:intergenic
CGTGGAATGACATGAAGATT+TGG 0.389136 5:+67213410 None:intergenic
TGATTCATGTCTTTGGTGTT+GGG 0.389779 5:-67214233 MsG0580027719.01.T01:CDS
TTGCTATTCAACGCACTTGT+CGG 0.390188 5:-67213944 MsG0580027719.01.T01:CDS
GTTGTGGTGGAGGAGTGGTT+TGG 0.391596 5:+67214671 None:intergenic
TTTCTTGGAAAACGAATTGC+TGG 0.394254 5:-67213518 MsG0580027719.01.T01:CDS
ATATAATACCTTCATCCATC+TGG 0.395620 5:+67211395 None:intergenic
GTGGCTATGAGAGAAGGTTT+TGG 0.398028 5:-67213587 MsG0580027719.01.T01:CDS
CTCTTTGCTTGTAAAATACT+GGG 0.401880 5:+67211957 None:intergenic
TAAAGATACCTTCCTGCTAC+AGG 0.403005 5:+67211815 None:intergenic
GGGTTGGATTTGGGACGATT+TGG 0.409132 5:+67214622 None:intergenic
TGTCTGCAGAAATCAGCAAT+TGG 0.415033 5:-67211020 MsG0580027719.01.T01:intron
TGTTATTGAGGCTCTTATAT+GGG 0.420385 5:-67211870 MsG0580027719.01.T01:CDS
ATCCTACAGATGAGTCTTAT+GGG 0.421410 5:-67212066 MsG0580027719.01.T01:CDS
TCGACGGCAGTTGACAATAA+TGG 0.426486 5:+67214727 None:intergenic
CATTGCAGTGAAAAGAAAAT+GGG 0.429423 5:-67213647 MsG0580027719.01.T01:intron
CGATTTGGTGTTGGATCTTG+AGG 0.433773 5:+67214637 None:intergenic
GTTGGATTTGCCCCTGTAGC+AGG 0.435799 5:-67211827 MsG0580027719.01.T01:CDS
GGAAGGGGTTAATTCAGCTT+TGG 0.440309 5:-67214338 MsG0580027719.01.T01:CDS
TTCGAGAAACGTGGTGGTTG+CGG 0.445489 5:-67214458 MsG0580027719.01.T01:five_prime_UTR
CAAAATATCAGCATCAGCAT+TGG 0.451825 5:+67214267 None:intergenic
GATCAAGCCGTGGTGGATAT+GGG 0.456701 5:-67211480 MsG0580027719.01.T01:CDS
ATTTGAAAAGGTGCTTCAGC+CGG 0.463345 5:-67213561 MsG0580027719.01.T01:CDS
GGTGGTGGCGGTGGTTGTGG+TGG 0.466786 5:+67214658 None:intergenic
GTCTGCAGAAATCAGCAATT+GGG 0.470409 5:-67211019 MsG0580027719.01.T01:intron
TACTGCTTCCAGATGGATGA+AGG 0.473056 5:-67211403 MsG0580027719.01.T01:intron
CTCAGAAAGTTGTGATTGAC+TGG 0.473238 5:-67214486 MsG0580027719.01.T01:five_prime_UTR
CGGTGGTTGTGGTGGAGGAG+TGG 0.476087 5:+67214666 None:intergenic
AAAATATCAGCATCAGCATT+GGG 0.483686 5:+67214268 None:intergenic
ACTTACCAGTAATCATCAAC+TGG 0.483785 5:+67210954 None:intergenic
TTGCTGGTCATCTCACTCTT+CGG 0.485262 5:-67213502 MsG0580027719.01.T01:CDS
TGAATTGTGAAGTGGCGAAT+GGG 0.486970 5:-67214375 MsG0580027719.01.T01:CDS
GGATCTTGAGGTGGTGGCGG+TGG 0.490632 5:+67214649 None:intergenic
AGAGCCTCAATAACAGAGTA+AGG 0.492956 5:+67211878 None:intergenic
TGGTTGTCACCCCTTACCTA+TGG 0.499260 5:-67211453 MsG0580027719.01.T01:CDS
GGTGTTGGATCTTGAGGTGG+TGG 0.500595 5:+67214643 None:intergenic
TTGCACGTTGTCCATAGGTA+AGG 0.503246 5:+67211442 None:intergenic
CGGGATGCCATTGCATGCCA+TGG 0.503619 5:-67213541 MsG0580027719.01.T01:CDS
GTTGGATCTTGAGGTGGTGG+CGG 0.506170 5:+67214646 None:intergenic
GCTGTTGTATATTACAGTGT+TGG 0.510376 5:-67211845 MsG0580027719.01.T01:CDS
TGTACCTTACTCTGTTATTG+AGG 0.514367 5:-67211882 MsG0580027719.01.T01:CDS
TTTGAAAAGGTGCTTCAGCC+GGG 0.514758 5:-67213560 MsG0580027719.01.T01:CDS
AGAGTAGCGTGTTGTTTGCT+GGG 0.520701 5:-67214312 MsG0580027719.01.T01:CDS
CATGGCATGCAATGGCATCC+CGG 0.521469 5:+67213542 None:intergenic
TGCACGTTGTCCATAGGTAA+GGG 0.527290 5:+67211443 None:intergenic
TATTCTATCCTGCATGGGCA+TGG 0.529071 5:-67211928 MsG0580027719.01.T01:CDS
TGTGAGACCAAGACAAAGGT+TGG 0.530281 5:-67213458 MsG0580027719.01.T01:CDS
TGGTGGAGGAGTGGTTTGGA+CGG 0.533295 5:+67214675 None:intergenic
TGTTTGAGAGTTGGATTGTG+TGG 0.534437 5:+67214769 None:intergenic
TAACAAACCAACCTTTGTCT+TGG 0.535367 5:+67213451 None:intergenic
GATTTGGGACGATTTGGTGT+TGG 0.536331 5:+67214628 None:intergenic
GCGTGTTGTTTGCTGGGCAG+AGG 0.537665 5:-67214306 MsG0580027719.01.T01:CDS
ATAATTTATTCTATCCTGCA+TGG 0.539822 5:-67211934 MsG0580027719.01.T01:CDS
TAATTTATTCTATCCTGCAT+GGG 0.544860 5:-67211933 MsG0580027719.01.T01:CDS
CCGTGGTGGATATGGGCTAC+TGG 0.546706 5:-67211473 MsG0580027719.01.T01:CDS
GGTTGTTTGCTTATTACAGA+GGG 0.555082 5:-67214516 MsG0580027719.01.T01:five_prime_UTR
AGGTACACGGAGAATCCAAC+TGG 0.555858 5:+67211898 None:intergenic
GACGGTGATGTCGATTTGCA+TGG 0.563466 5:+67214693 None:intergenic
ATGAATTTACTGCTTCCAGA+TGG 0.565982 5:-67211410 MsG0580027719.01.T01:CDS
TAGGATGCAACCTTGTTCGC+AGG 0.566273 5:+67212083 None:intergenic
CATGGTGGTGGATTCGTCGA+CGG 0.569190 5:+67214711 None:intergenic
TTGTTGCCGAAATCTGTTCG+AGG 0.572625 5:-67213972 MsG0580027719.01.T01:CDS
AAAGATACCTTCCTGCTACA+GGG 0.574102 5:+67211816 None:intergenic
GTACAATATTCCTGCGAACA+AGG 0.574678 5:-67212093 MsG0580027719.01.T01:CDS
AAGATACCTTCCTGCTACAG+GGG 0.575491 5:+67211817 None:intergenic
CTGAATTGTGAAGTGGCGAA+TGG 0.576328 5:-67214376 MsG0580027719.01.T01:CDS
TGTAATTGCACGTTGTCCAT+AGG 0.577812 5:+67211437 None:intergenic
GATGTCGATTTGCATGGTGG+TGG 0.579132 5:+67214699 None:intergenic
CAAGAAACCATGGCATGCAA+TGG 0.579517 5:+67213534 None:intergenic
GTAAAAGACCATGCCCATGC+AGG 0.580657 5:+67211920 None:intergenic
GAATTGTGAAGTGGCGAATG+GGG 0.580861 5:-67214374 MsG0580027719.01.T01:CDS
TTCATGTCTTTGGTGTTGGG+AGG 0.591006 5:-67214230 MsG0580027719.01.T01:intron
GTTGTTATTGTAGACTAGGG+AGG 0.592831 5:-67214000 MsG0580027719.01.T01:intron
TCTCAAGTGGCTATGAGAGA+AGG 0.594736 5:-67213593 MsG0580027719.01.T01:CDS
AGCTTCCTCTGATGATATCG+CGG 0.606037 5:-67211982 MsG0580027719.01.T01:CDS
GGTGGTTGCGGCGTTGATGG+AGG 0.612733 5:-67214446 MsG0580027719.01.T01:exon
TCATCAACAAGCTTCGACAA+CGG 0.616224 5:+67214412 None:intergenic
CTGGTAGATTGTTTGAAACG+AGG 0.619092 5:+67210973 None:intergenic
AATTGTGAAGTGGCGAATGG+GGG 0.623209 5:-67214373 MsG0580027719.01.T01:CDS
GATTTGCCCCTGTAGCAGGA+AGG 0.626258 5:-67211823 MsG0580027719.01.T01:intron
GGGTTGTTTGCTTATTACAG+AGG 0.629300 5:-67214517 MsG0580027719.01.T01:five_prime_UTR
TTTGGTGTTGGATCTTGAGG+TGG 0.629389 5:+67214640 None:intergenic
TGAGAAGCTGAATTGTGAAG+TGG 0.631929 5:-67214383 MsG0580027719.01.T01:CDS
CTCCCATAAGACTCATCTGT+AGG 0.632161 5:+67212064 None:intergenic
GCAAGTTGATCAATCTCAAG+TGG 0.635084 5:-67213606 MsG0580027719.01.T01:CDS
CTGGGGAGGTTCGAGAAACG+TGG 0.638539 5:-67214467 MsG0580027719.01.T01:five_prime_UTR
CAGAAATGATCAAGCCGTGG+TGG 0.638681 5:-67211487 MsG0580027719.01.T01:CDS
GCTGGGCAGAGGATGATGTA+CGG 0.640684 5:-67214295 MsG0580027719.01.T01:CDS
GCACGTTGTCCATAGGTAAG+GGG 0.644942 5:+67211444 None:intergenic
GCAATTGGGAACAACACAGT+AGG 0.650222 5:-67211005 MsG0580027719.01.T01:CDS
AAAGTTGTGATTGACTGGGG+AGG 0.650625 5:-67214481 MsG0580027719.01.T01:five_prime_UTR
CAAATGTGAGACCAAGACAA+AGG 0.650717 5:-67213462 MsG0580027719.01.T01:CDS
ATTGTGAAGTGGCGAATGGG+GGG 0.662126 5:-67214372 MsG0580027719.01.T01:CDS
TCAGAAAGTTGTGATTGACT+GGG 0.664166 5:-67214485 MsG0580027719.01.T01:five_prime_UTR
GGGAGCCGCGATATCATCAG+AGG 0.669793 5:+67211977 None:intergenic
CTTCAGAAATGATCAAGCCG+TGG 0.670695 5:-67211490 MsG0580027719.01.T01:intron
CAATAACAGAGTAAGGTACA+CGG 0.673495 5:+67211885 None:intergenic
ATTGCAGTGAAAAGAAAATG+GGG 0.673791 5:-67213646 MsG0580027719.01.T01:intron
CAGAAAGTTGTGATTGACTG+GGG 0.674967 5:-67214484 MsG0580027719.01.T01:five_prime_UTR
GGTGATGTCGATTTGCATGG+TGG 0.680451 5:+67214696 None:intergenic
GTTGTTTGCTTATTACAGAG+GGG 0.700903 5:-67214515 MsG0580027719.01.T01:five_prime_UTR
GGGAGGTTCGAGAAACGTGG+TGG 0.714035 5:-67214464 MsG0580027719.01.T01:five_prime_UTR
CCAGTAGCCCATATCCACCA+CGG 0.724657 5:+67211473 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATCTTTATAAATCAATT+TGG - Chr5:67212491-67212510 MsG0580027719.01.T01:intron 10.0%
!! TTTGGTTAATTATTTATAAT+TGG - Chr5:67212445-67212464 MsG0580027719.01.T01:intron 10.0%
!!! ATTGATTTATAAAGATTAAA+TGG + Chr5:67212490-67212509 None:intergenic 10.0%
!!! ATTTTTTTTTTCTTGATTTT+TGG - Chr5:67210987-67211006 MsG0580027719.01.T01:CDS 10.0%
!! AAAGAACATGTATAAAATAT+TGG + Chr5:67212340-67212359 None:intergenic 15.0%
!! AAGAACATGTATAAAATATT+GGG + Chr5:67212339-67212358 None:intergenic 15.0%
!! AATAAAAATTAACAAGTATG+AGG + Chr5:67211503-67211522 None:intergenic 15.0%
!! TAAATGGTTTGAATAATAAA+TGG + Chr5:67212474-67212493 None:intergenic 15.0%
!!! AAAAATGTGTAAAGAATTTT+CGG - Chr5:67212263-67212282 MsG0580027719.01.T01:intron 15.0%
!!! AAAGAAAGTATTTATGTTAT+TGG + Chr5:67211812-67211831 None:intergenic 15.0%
!! AAATTAAAATGCAGCAATAA+AGG + Chr5:67212565-67212584 None:intergenic 20.0%
!! AATTAAAATGCAGCAATAAA+GGG + Chr5:67212564-67212583 None:intergenic 20.0%
!! AGAACATGTATAAAATATTG+GGG + Chr5:67212338-67212357 None:intergenic 20.0%
!! ATAGAAAACCAATTCATATT+TGG - Chr5:67212796-67212815 MsG0580027719.01.T01:intron 20.0%
!! CTTATATGTTTGCTTAAATA+TGG - Chr5:67211883-67211902 MsG0580027719.01.T01:CDS 20.0%
!! TTAAGTACTATAGAGAATAT+AGG - Chr5:67214001-67214020 MsG0580027719.01.T01:intron 20.0%
!! TTATACTTCATACAATATCT+AGG + Chr5:67214640-67214659 None:intergenic 20.0%
!! TTATTAACACATGAATTCAT+TGG + Chr5:67213851-67213870 None:intergenic 20.0%
!! TTGTTCACATGATATTTAAT+GGG - Chr5:67213180-67213199 MsG0580027719.01.T01:intron 20.0%
!! TTTCATTGCACAAATTATTT+AGG - Chr5:67214515-67214534 MsG0580027719.01.T01:five_prime_UTR 20.0%
!!! ATGAATGTTTTTTAAGATGT+TGG - Chr5:67211087-67211106 MsG0580027719.01.T01:intron 20.0%
!!! CAATTTGCAATGTATTTTAT+GGG + Chr5:67212728-67212747 None:intergenic 20.0%
!!! TAAATACTTTCTTTTTAGCT+AGG - Chr5:67211818-67211837 MsG0580027719.01.T01:intron 20.0%
!!! TTTAGCTAGGATATTTTTTT+AGG - Chr5:67211831-67211850 MsG0580027719.01.T01:CDS 20.0%
!!! TTTATTCTAAGGAATCTTTA+CGG - Chr5:67212676-67212695 MsG0580027719.01.T01:intron 20.0%
!!! TTTGTTTTTGTGTTTGATTT+AGG - Chr5:67211346-67211365 MsG0580027719.01.T01:intron 20.0%
! ATAATTTATTCTATCCTGCA+TGG - Chr5:67213258-67213277 MsG0580027719.01.T01:intron 25.0%
! ATATGACAATTCATGAACAA+AGG + Chr5:67214731-67214750 None:intergenic 25.0%
! CTTGTTCACATGATATTTAA+TGG - Chr5:67213179-67213198 MsG0580027719.01.T01:intron 25.0%
! GAAAAAAAGATGTTAATTCG+CGG - Chr5:67210601-67210620 MsG0580027719.01.T01:intron 25.0%
! TAAAGAAGCAAAAAACCAAA+GGG + Chr5:67214545-67214564 None:intergenic 25.0%
! TAATTTATTCTATCCTGCAT+GGG - Chr5:67213259-67213278 MsG0580027719.01.T01:intron 25.0%
! TATAGTACACGTTTATTCTA+AGG - Chr5:67212665-67212684 MsG0580027719.01.T01:intron 25.0%
! TATGACAATTCATGAACAAA+GGG + Chr5:67214730-67214749 None:intergenic 25.0%
! TCATATAGAAACAATGTTGT+GGG + Chr5:67214286-67214305 None:intergenic 25.0%
! TGACATACATTAGATACTAA+AGG + Chr5:67212193-67212212 None:intergenic 25.0%
! TGATCAAAATCTTAGTATGA+AGG - Chr5:67214079-67214098 MsG0580027719.01.T01:intron 25.0%
! TGTATATGCCAAATATGAAT+TGG + Chr5:67212807-67212826 None:intergenic 25.0%
! TGTGCAATGAAAATAGATTT+AGG + Chr5:67214507-67214526 None:intergenic 25.0%
! TTCATATAGAAACAATGTTG+TGG + Chr5:67214287-67214306 None:intergenic 25.0%
!! CTTTATAAATCAATTTGGTG+TGG - Chr5:67212496-67212515 MsG0580027719.01.T01:intron 25.0%
!! GCAATTTGCAATGTATTTTA+TGG + Chr5:67212729-67212748 None:intergenic 25.0%
!! TATGTTGTTATTGTAGACTA+GGG - Chr5:67211189-67211208 MsG0580027719.01.T01:intron 25.0%
!!! AAATTTTGACAACCTGATTA+TGG - Chr5:67214028-67214047 MsG0580027719.01.T01:intron 25.0%
!!! ACTATAGTTTATTTGTTGTG+TGG - Chr5:67211036-67211055 MsG0580027719.01.T01:intron 25.0%
!!! AGGTTTTGGAAAATTTGAAA+AGG - Chr5:67211619-67211638 MsG0580027719.01.T01:intron 25.0%
!!! ATGGATGAAGGTATTATATT+TGG - Chr5:67213801-67213820 MsG0580027719.01.T01:intron 25.0%
!!! TACATATGAAGTATTGAAAG+TGG + Chr5:67211934-67211953 None:intergenic 25.0%
!!! TGGTTATGTTGATAGTAATT+GGG - Chr5:67211107-67211126 MsG0580027719.01.T01:intron 25.0%
!!! TTGGTTATGTTGATAGTAAT+TGG - Chr5:67211106-67211125 MsG0580027719.01.T01:intron 25.0%
!!! TTTGGTTTTTTGCTTCTTTA+GGG - Chr5:67214545-67214564 MsG0580027719.01.T01:five_prime_UTR 25.0%
AAAATATCAGCATCAGCATT+GGG + Chr5:67210927-67210946 None:intergenic 30.0%
AACCAAAGTAGAAAATGTCA+AGG + Chr5:67212432-67212451 None:intergenic 30.0%
AACCACTACACCTAATAATT+AGG + Chr5:67212754-67212773 None:intergenic 30.0%
AATCAAAATAACATAGCACC+AGG + Chr5:67211863-67211882 None:intergenic 30.0%
AATTATTTAGGCATTCCCTT+TGG - Chr5:67214527-67214546 MsG0580027719.01.T01:five_prime_UTR 30.0%
ACAAAAAGCAATGACATAGA+AGG + Chr5:67213440-67213459 None:intergenic 30.0%
AGAAACATAACTTTACCGAA+AGG + Chr5:67212238-67212257 None:intergenic 30.0%
ATAAAGCACAAAAGACAATC+AGG + Chr5:67213929-67213948 None:intergenic 30.0%
ATATAATACCTTCATCCATC+TGG + Chr5:67213800-67213819 None:intergenic 30.0%
ATCATTCTGATTCATGTCTT+TGG - Chr5:67210952-67210971 MsG0580027719.01.T01:intron 30.0%
ATGACAATTCATGAACAAAG+GGG + Chr5:67214729-67214748 None:intergenic 30.0%
ATTGCAGTGAAAAGAAAATG+GGG - Chr5:67211546-67211565 MsG0580027719.01.T01:intron 30.0%
ATTTATGTTATTGGTAAGCG+TGG + Chr5:67211803-67211822 None:intergenic 30.0%
CAAATTGCCTCCTAATTATT+AGG - Chr5:67212741-67212760 MsG0580027719.01.T01:intron 30.0%
CATATAGAAACAATGTTGTG+GGG + Chr5:67214285-67214304 None:intergenic 30.0%
CATGTGTTAATAAACTGTCA+AGG - Chr5:67213858-67213877 MsG0580027719.01.T01:intron 30.0%
CATTGCAGTGAAAAGAAAAT+GGG - Chr5:67211545-67211564 MsG0580027719.01.T01:intron 30.0%
CTAAAGAAGCAAAAAACCAA+AGG + Chr5:67214546-67214565 None:intergenic 30.0%
CTCTTTGCTTGTAAAATACT+GGG + Chr5:67213238-67213257 None:intergenic 30.0%
GAAACATAACTTTACCGAAA+GGG + Chr5:67212237-67212256 None:intergenic 30.0%
GACTAAAGTAGAAAATGTCA+AGG + Chr5:67212307-67212326 None:intergenic 30.0%
GTATGTTCAGATACAATAGT+TGG - Chr5:67212080-67212099 MsG0580027719.01.T01:CDS 30.0%
TACATGTATGACGAACTATA+AGG + Chr5:67214428-67214447 None:intergenic 30.0%
TATAGTTCGTCATACATGTA+CGG - Chr5:67214428-67214447 MsG0580027719.01.T01:CDS 30.0%
TCTCTTTGCTTGTAAAATAC+TGG + Chr5:67213239-67213258 None:intergenic 30.0%
TGTTATTGAGGCTCTTATAT+GGG - Chr5:67213322-67213341 MsG0580027719.01.T01:intron 30.0%
TGTTGAAGTTGAATGTGTAT+TGG - Chr5:67211134-67211153 MsG0580027719.01.T01:intron 30.0%
TTAGTGGAAATCAAAAGTAG+AGG + Chr5:67212952-67212971 None:intergenic 30.0%
TTCTGATCCTGAAAAGTTAA+AGG - Chr5:67211372-67211391 MsG0580027719.01.T01:intron 30.0%
! AACCTTGACATTTTCTACTT+TGG - Chr5:67212302-67212321 MsG0580027719.01.T01:intron 30.0%
! AACTTTTCTCTAACAAGATG+TGG + Chr5:67213648-67213667 None:intergenic 30.0%
! AATGTATTTTATGGGCAGTT+AGG + Chr5:67212720-67212739 None:intergenic 30.0%
! CTATGTTGTTATTGTAGACT+AGG - Chr5:67211188-67211207 MsG0580027719.01.T01:intron 30.0%
!! GAACACTGATTACATTTTGA+AGG - Chr5:67212043-67212062 MsG0580027719.01.T01:CDS 30.0%
!! GATTTTGATCAGTTGATTGT+TGG + Chr5:67214070-67214089 None:intergenic 30.0%
!! TAAGAGAGGCTAAGTTTTAT+AGG + Chr5:67212904-67212923 None:intergenic 30.0%
!! TATTTGTTGTGTGGTTAACT+GGG - Chr5:67211045-67211064 MsG0580027719.01.T01:intron 30.0%
!! TTATTTGTTGTGTGGTTAAC+TGG - Chr5:67211044-67211063 MsG0580027719.01.T01:intron 30.0%
!!! AATACGTTTTGTTTGAGAGT+TGG + Chr5:67210435-67210454 None:intergenic 30.0%
!!! ACATCTTTTTTTCGCTTTCA+AGG + Chr5:67210594-67210613 None:intergenic 30.0%
!!! CATCTTTTTTTCGCTTTCAA+GGG + Chr5:67210593-67210612 None:intergenic 30.0%
!!! CTTTGGTTTTTTGCTTCTTT+AGG - Chr5:67214544-67214563 MsG0580027719.01.T01:five_prime_UTR 30.0%
!!! GATTACATTTTGAAGGTACT+TGG - Chr5:67212050-67212069 MsG0580027719.01.T01:CDS 30.0%
!!! TATTTTTTTAGGTGTCATCC+TGG - Chr5:67211842-67211861 MsG0580027719.01.T01:CDS 30.0%
AAATCAAAAGTAGAGGAACG+TGG + Chr5:67212945-67212964 None:intergenic 35.0%
AACAGAGGATGCATATAAAG+GGG + Chr5:67212003-67212022 None:intergenic 35.0%
AATCAAAAGTAGAGGAACGT+GGG + Chr5:67212944-67212963 None:intergenic 35.0%
AATCCAACAAAAGCAACCTA+GGG + Chr5:67213071-67213090 None:intergenic 35.0%
ACAAAAGACAATCAGGAGTA+AGG + Chr5:67213922-67213941 None:intergenic 35.0%
ACATGTACGGAAAACTATTG+AGG - Chr5:67214441-67214460 MsG0580027719.01.T01:exon 35.0%
ACTTACCAGTAATCATCAAC+TGG + Chr5:67214241-67214260 None:intergenic 35.0%
AGAATAGAGCAGAGAGATAA+AGG + Chr5:67213154-67213173 None:intergenic 35.0%
ATCATAGCATGACTGTCTAT+TGG + Chr5:67214572-67214591 None:intergenic 35.0%
ATCTCTCTGCTCTATTCTTT+GGG - Chr5:67213156-67213175 MsG0580027719.01.T01:intron 35.0%
ATCTCTTTCACTATTGTGTC+AGG - Chr5:67211908-67211927 MsG0580027719.01.T01:CDS 35.0%
ATGAATTTACTGCTTCCAGA+TGG - Chr5:67213782-67213801 MsG0580027719.01.T01:intron 35.0%
ATGGTTCTTGCCAATACATT+TGG - Chr5:67213557-67213576 MsG0580027719.01.T01:CDS 35.0%
CAAAATATCAGCATCAGCAT+TGG + Chr5:67210928-67210947 None:intergenic 35.0%
CAAAGAAAGAGAGTTACAAC+AGG - Chr5:67212133-67212152 MsG0580027719.01.T01:intron 35.0%
CAACAGAGGATGCATATAAA+GGG + Chr5:67212004-67212023 None:intergenic 35.0%
CAAGAAAGAGAAGACACAAA+TGG + Chr5:67212867-67212886 None:intergenic 35.0%
CAATAACAGAGTAAGGTACA+CGG + Chr5:67213310-67213329 None:intergenic 35.0%
CACACAATCCTAGTAATTCT+TGG + Chr5:67211419-67211438 None:intergenic 35.0%
CACTACACCTAATAATTAGG+AGG + Chr5:67212751-67212770 None:intergenic 35.0%
CAGCATTGCTGTAAGTTATT+TGG - Chr5:67213670-67213689 MsG0580027719.01.T01:intron 35.0%
CATAGGAAAATGAGAGTTAG+TGG + Chr5:67212968-67212987 None:intergenic 35.0%
CTCCTAATTATTAGGTGTAG+TGG - Chr5:67212749-67212768 MsG0580027719.01.T01:intron 35.0%
CTGTTATTGAGGCTCTTATA+TGG - Chr5:67213321-67213340 MsG0580027719.01.T01:intron 35.0%
CTGTTGTAACTCTCTTTCTT+TGG + Chr5:67212135-67212154 None:intergenic 35.0%
CTTTATATGCATCCTCTGTT+GGG - Chr5:67212003-67212022 MsG0580027719.01.T01:CDS 35.0%
GATATTTGGCATATAGCACT+CGG + Chr5:67214707-67214726 None:intergenic 35.0%
GCATTGCAGTGAAAAGAAAA+TGG - Chr5:67211544-67211563 MsG0580027719.01.T01:intron 35.0%
GCTGTTGTATATTACAGTGT+TGG - Chr5:67213347-67213366 MsG0580027719.01.T01:intron 35.0%
GGAGGATTTATTGTACCTAA+AGG - Chr5:67213611-67213630 MsG0580027719.01.T01:CDS 35.0%
GGTTGTTTGCTTATTACAGA+GGG - Chr5:67210676-67210695 MsG0580027719.01.T01:intron 35.0%
GTTCAGTGAGATAATAAGAG+AGG + Chr5:67212918-67212937 None:intergenic 35.0%
GTTGTTTGCTTATTACAGAG+GGG - Chr5:67210677-67210696 MsG0580027719.01.T01:intron 35.0%
TAACAAACCAACCTTTGTCT+TGG + Chr5:67211744-67211763 None:intergenic 35.0%
TAGACAGTCATGCTATGATA+TGG - Chr5:67214573-67214592 MsG0580027719.01.T01:five_prime_UTR 35.0%
TATCTCTCTGCTCTATTCTT+TGG - Chr5:67213155-67213174 MsG0580027719.01.T01:intron 35.0%
TCAATGAAGTCTCCATAATC+AGG + Chr5:67214043-67214062 None:intergenic 35.0%
TCAGAAAGTTGTGATTGACT+GGG - Chr5:67210707-67210726 MsG0580027719.01.T01:intron 35.0%
TCATGAACAAAGGGGATATT+TGG + Chr5:67214721-67214740 None:intergenic 35.0%
TCATGTGTCCAAGAATTACT+AGG - Chr5:67211408-67211427 MsG0580027719.01.T01:CDS 35.0%
TGGCAGAAAATTAAGCAGTT+AGG + Chr5:67213831-67213850 None:intergenic 35.0%
TGTACCTTACTCTGTTATTG+AGG - Chr5:67213310-67213329 MsG0580027719.01.T01:intron 35.0%
TTTATATGCATCCTCTGTTG+GGG - Chr5:67212004-67212023 MsG0580027719.01.T01:CDS 35.0%
TTTATGCGTGGTCAAAACTT+AGG - Chr5:67213944-67213963 MsG0580027719.01.T01:CDS 35.0%
TTTCTTGGAAAACGAATTGC+TGG - Chr5:67211674-67211693 MsG0580027719.01.T01:intron 35.0%
! AAATGGCATTAGGTCTTTTC+GGG - Chr5:67213510-67213529 MsG0580027719.01.T01:CDS 35.0%
! ACTTTTTGTAGTGCACCAAA+TGG - Chr5:67213493-67213512 MsG0580027719.01.T01:CDS 35.0%
! ATCCTACAGATGAGTCTTAT+GGG - Chr5:67213126-67213145 MsG0580027719.01.T01:intron 35.0%
! ATTCGTTTTCCAAGAAACCA+TGG + Chr5:67211671-67211690 None:intergenic 35.0%
! ATTTGAGCTTGTTTCTCTTC+GGG + Chr5:67210630-67210649 None:intergenic 35.0%
! CAAATGGCATTAGGTCTTTT+CGG - Chr5:67213509-67213528 MsG0580027719.01.T01:CDS 35.0%
! CAATGCTGATGCTGATATTT+TGG - Chr5:67210926-67210945 MsG0580027719.01.T01:intron 35.0%
! GATTTGAGCTTGTTTCTCTT+CGG + Chr5:67210631-67210650 None:intergenic 35.0%
! TGTGTAAAGAATTTTCGGTG+AGG - Chr5:67212268-67212287 MsG0580027719.01.T01:intron 35.0%
!! ACTGCTGATTATTTTCTTGC+TGG - Chr5:67213589-67213608 MsG0580027719.01.T01:CDS 35.0%
!! ATAGTTGGTAACAAATGACC+AGG - Chr5:67212095-67212114 MsG0580027719.01.T01:CDS 35.0%
!! ATCTACCAGTTGATGATTAC+TGG - Chr5:67214233-67214252 MsG0580027719.01.T01:CDS 35.0%
!! CTGCTGATTATTTTCTTGCT+GGG - Chr5:67213590-67213609 MsG0580027719.01.T01:CDS 35.0%
!! GCTGATTCCTTTAACTTTTC+AGG + Chr5:67211382-67211401 None:intergenic 35.0%
!! TAGTTGGTAACAAATGACCA+GGG - Chr5:67212096-67212115 MsG0580027719.01.T01:CDS 35.0%
!! TGATTCATGTCTTTGGTGTT+GGG - Chr5:67210959-67210978 MsG0580027719.01.T01:intron 35.0%
!!! TTTTTTTCGCTTTCAAGGGT+TGG + Chr5:67210589-67210608 None:intergenic 35.0%
AAACACTTCTTGACCTCTCT+GGG + Chr5:67214357-67214376 None:intergenic 40.0%
AAAGATACCTTCCTGCTACA+GGG + Chr5:67213379-67213398 None:intergenic 40.0%
AATGTTGTGGGGAAATCTCA+CGG + Chr5:67214274-67214293 None:intergenic 40.0%
ACAGAGGATGCATATAAAGG+GGG + Chr5:67212002-67212021 None:intergenic 40.0%
AGACACAAATGGTCATGGAT+CGG + Chr5:67212856-67212875 None:intergenic 40.0%
AGAGAAGACACAAATGGTCA+TGG + Chr5:67212861-67212880 None:intergenic 40.0%
AGAGCCTCAATAACAGAGTA+AGG + Chr5:67213317-67213336 None:intergenic 40.0%
ATCAAAAGTAGAGGAACGTG+GGG + Chr5:67212943-67212962 None:intergenic 40.0%
ATCCAACAAAAGCAACCTAG+GGG + Chr5:67213070-67213089 None:intergenic 40.0%
ATTTATCTTACTCCCCAGAG+AGG - Chr5:67214341-67214360 MsG0580027719.01.T01:CDS 40.0%
CAAATGTGAGACCAAGACAA+AGG - Chr5:67211730-67211749 MsG0580027719.01.T01:intron 40.0%
CAGAAAGTTGTGATTGACTG+GGG - Chr5:67210708-67210727 MsG0580027719.01.T01:intron 40.0%
CATCCTACAGATGAGTCTTA+TGG - Chr5:67213125-67213144 MsG0580027719.01.T01:intron 40.0%
CCAACAGAGGATGCATATAA+AGG + Chr5:67212005-67212024 None:intergenic 40.0%
CCTTTATATGCATCCTCTGT+TGG - Chr5:67212002-67212021 MsG0580027719.01.T01:CDS 40.0%
CGAAAAGACCTAATGCCATT+TGG + Chr5:67213511-67213530 None:intergenic 40.0%
CGTGGAATGACATGAAGATT+TGG + Chr5:67211785-67211804 None:intergenic 40.0%
CTCAGAAAGTTGTGATTGAC+TGG - Chr5:67210706-67210725 MsG0580027719.01.T01:intron 40.0%
GAATCCAACAAAAGCAACCT+AGG + Chr5:67213072-67213091 None:intergenic 40.0%
GGGTTGTTTGCTTATTACAG+AGG - Chr5:67210675-67210694 MsG0580027719.01.T01:intron 40.0%
GGTACACTTTCTTTCCCTTT+CGG - Chr5:67212220-67212239 MsG0580027719.01.T01:intron 40.0%
GTACAATATTCCTGCGAACA+AGG - Chr5:67213099-67213118 MsG0580027719.01.T01:intron 40.0%
GTCATGAGAGTTAGTGACAT+AGG + Chr5:67212985-67213004 None:intergenic 40.0%
GTCTGCAGAAATCAGCAATT+GGG - Chr5:67214173-67214192 MsG0580027719.01.T01:intron 40.0%
TAAACACTTCTTGACCTCTC+TGG + Chr5:67214358-67214377 None:intergenic 40.0%
TAAAGATACCTTCCTGCTAC+AGG + Chr5:67213380-67213399 None:intergenic 40.0%
TATTTGATCATGTTGCCCCT+AGG - Chr5:67213052-67213071 MsG0580027719.01.T01:intron 40.0%
TCATCAACAAGCTTCGACAA+CGG + Chr5:67210783-67210802 None:intergenic 40.0%
TCTAATGTATGTCACTGTCC+CGG - Chr5:67212199-67212218 MsG0580027719.01.T01:intron 40.0%
TGAATTGTGAAGTGGCGAAT+GGG - Chr5:67210817-67210836 MsG0580027719.01.T01:intron 40.0%
TGAGAAGCTGAATTGTGAAG+TGG - Chr5:67210809-67210828 MsG0580027719.01.T01:intron 40.0%
TGTAATTGCACGTTGTCCAT+AGG + Chr5:67213758-67213777 None:intergenic 40.0%
TGTCTGCAGAAATCAGCAAT+TGG - Chr5:67214172-67214191 MsG0580027719.01.T01:intron 40.0%
TTAGGTGTAGTGGTTATGCT+TGG - Chr5:67212759-67212778 MsG0580027719.01.T01:intron 40.0%
TTATATGCATCCTCTGTTGG+GGG - Chr5:67212005-67212024 MsG0580027719.01.T01:CDS 40.0%
! AAAGGGAAAGAAAGTGTACC+GGG + Chr5:67212220-67212239 None:intergenic 40.0%
! CATTGTTTGCTTGTTGCTGA+TGG - Chr5:67211160-67211179 MsG0580027719.01.T01:intron 40.0%
! CTGATTATTTTCTTGCTGGG+AGG - Chr5:67213593-67213612 MsG0580027719.01.T01:CDS 40.0%
! CTGATTCATGTCTTTGGTGT+TGG - Chr5:67210958-67210977 MsG0580027719.01.T01:intron 40.0%
! CTGGTAGATTGTTTGAAACG+AGG + Chr5:67214222-67214241 None:intergenic 40.0%
! CTTTACGGCACACATCATTT+TGG - Chr5:67212691-67212710 MsG0580027719.01.T01:intron 40.0%
! GAAAGGGAAAGAAAGTGTAC+CGG + Chr5:67212221-67212240 None:intergenic 40.0%
! GTTGTTATTGTAGACTAGGG+AGG - Chr5:67211192-67211211 MsG0580027719.01.T01:intron 40.0%
! TGCTTATTACAGAGGGGTTT+TGG - Chr5:67210683-67210702 MsG0580027719.01.T01:intron 40.0%
! TGTCTTTTGTGCTTTATGCG+TGG - Chr5:67213932-67213951 MsG0580027719.01.T01:intron 40.0%
! TTGCTATTCAACGCACTTGT+CGG - Chr5:67211248-67211267 MsG0580027719.01.T01:intron 40.0%
!! AGTTGGTAACAAATGACCAG+GGG - Chr5:67212097-67212116 MsG0580027719.01.T01:CDS 40.0%
!! ATTAGGTCTTTTCGGGATGA+TGG - Chr5:67213517-67213536 MsG0580027719.01.T01:CDS 40.0%
!! ATTTGAAAAGGTGCTTCAGC+CGG - Chr5:67211631-67211650 MsG0580027719.01.T01:intron 40.0%
!! GCAAGTTGATCAATCTCAAG+TGG - Chr5:67211586-67211605 MsG0580027719.01.T01:intron 40.0%
AAAGTTGTGATTGACTGGGG+AGG - Chr5:67210711-67210730 MsG0580027719.01.T01:intron 45.0%
AACACTTCTTGACCTCTCTG+GGG + Chr5:67214356-67214375 None:intergenic 45.0%
AAGATACCTTCCTGCTACAG+GGG + Chr5:67213378-67213397 None:intergenic 45.0%
AATTGTGAAGTGGCGAATGG+GGG - Chr5:67210819-67210838 MsG0580027719.01.T01:intron 45.0%
ACCCTAGAAAAAGAGCTCGA+AGG - Chr5:67210654-67210673 MsG0580027719.01.T01:intron 45.0%
AGCTCTCCTCGAACAGATTT+CGG + Chr5:67211229-67211248 None:intergenic 45.0%
AGCTTCCTCTGATGATATCG+CGG - Chr5:67213210-67213229 MsG0580027719.01.T01:intron 45.0%
CAAGAAACCATGGCATGCAA+TGG + Chr5:67211661-67211680 None:intergenic 45.0%
CACGGCTTGATCATTTCTGA+AGG + Chr5:67213704-67213723 None:intergenic 45.0%
CACTCTTCGGCTACAACAAT+TGG - Chr5:67211703-67211722 MsG0580027719.01.T01:intron 45.0%
CATTGCATGCCATGGTTTCT+TGG - Chr5:67211659-67211678 MsG0580027719.01.T01:intron 45.0%
CCCTAGAAAAAGAGCTCGAA+GGG - Chr5:67210655-67210674 MsG0580027719.01.T01:intron 45.0%
CGCTTTCAAGGGTTGGATTT+GGG + Chr5:67210582-67210601 None:intergenic 45.0%
CTCCCATAAGACTCATCTGT+AGG + Chr5:67213131-67213150 None:intergenic 45.0%
CTGAATTGTGAAGTGGCGAA+TGG - Chr5:67210816-67210835 MsG0580027719.01.T01:intron 45.0%
CTTCAGAAATGATCAAGCCG+TGG - Chr5:67213702-67213721 MsG0580027719.01.T01:intron 45.0%
GAATTGTGAAGTGGCGAATG+GGG - Chr5:67210818-67210837 MsG0580027719.01.T01:intron 45.0%
GCAATTGGGAACAACACAGT+AGG - Chr5:67214187-67214206 MsG0580027719.01.T01:intron 45.0%
GGAAGGGGTTAATTCAGCTT+TGG - Chr5:67210854-67210873 MsG0580027719.01.T01:intron 45.0%
GTAGTGCACCAAATGGCATT+AGG - Chr5:67213500-67213519 MsG0580027719.01.T01:CDS 45.0%
GTGGATCTGTGCTTACCTTT+AGG + Chr5:67213629-67213648 None:intergenic 45.0%
TACTGCTTCCAGATGGATGA+AGG - Chr5:67213789-67213808 MsG0580027719.01.T01:intron 45.0%
TAGCACTCGGTAGAGAAACA+TGG + Chr5:67214694-67214713 None:intergenic 45.0%
TATTCTATCCTGCATGGGCA+TGG - Chr5:67213264-67213283 MsG0580027719.01.T01:intron 45.0%
TCGACGGCAGTTGACAATAA+TGG + Chr5:67210468-67210487 None:intergenic 45.0%
TCGCTTTCAAGGGTTGGATT+TGG + Chr5:67210583-67210602 None:intergenic 45.0%
TCTCAAGTGGCTATGAGAGA+AGG - Chr5:67211599-67211618 MsG0580027719.01.T01:intron 45.0%
TGCACGTTGTCCATAGGTAA+GGG + Chr5:67213752-67213771 None:intergenic 45.0%
TGCAGCTGAGCCAAATGTAT+TGG + Chr5:67213570-67213589 None:intergenic 45.0%
TGTGAGACCAAGACAAAGGT+TGG - Chr5:67211734-67211753 MsG0580027719.01.T01:intron 45.0%
TTGCACGTTGTCCATAGGTA+AGG + Chr5:67213753-67213772 None:intergenic 45.0%
TTGCTGGTCATCTCACTCTT+CGG - Chr5:67211690-67211709 MsG0580027719.01.T01:intron 45.0%
TTGTTGCCGAAATCTGTTCG+AGG - Chr5:67211220-67211239 MsG0580027719.01.T01:intron 45.0%
! ACCCTTCGAGCTCTTTTTCT+AGG + Chr5:67210659-67210678 None:intergenic 45.0%
! CCCTTCGAGCTCTTTTTCTA+GGG + Chr5:67210658-67210677 None:intergenic 45.0%
! GATGATGGCTTCTATTGCAC+GGG - Chr5:67213532-67213551 MsG0580027719.01.T01:CDS 45.0%
! GGATGATGGCTTCTATTGCA+CGG - Chr5:67213531-67213550 MsG0580027719.01.T01:CDS 45.0%
! GTGGCTATGAGAGAAGGTTT+TGG - Chr5:67211605-67211624 MsG0580027719.01.T01:intron 45.0%
!! AAGAGTAGCGTGTTGTTTGC+TGG - Chr5:67210879-67210898 MsG0580027719.01.T01:intron 45.0%
!! AGAGTAGCGTGTTGTTTGCT+GGG - Chr5:67210880-67210899 MsG0580027719.01.T01:intron 45.0%
!! CGATTTGGTGTTGGATCTTG+AGG + Chr5:67210558-67210577 None:intergenic 45.0%
!! GATTTGGGACGATTTGGTGT+TGG + Chr5:67210567-67210586 None:intergenic 45.0%
!! TTCATGTCTTTGGTGTTGGG+AGG - Chr5:67210962-67210981 MsG0580027719.01.T01:CDS 45.0%
!! TTTGAAAAGGTGCTTCAGCC+GGG - Chr5:67211632-67211651 MsG0580027719.01.T01:intron 45.0%
!! TTTGGTGTTGGATCTTGAGG+TGG + Chr5:67210555-67210574 None:intergenic 45.0%
!!! ATTATATATTAAATTAGTTT+TGG - Chr5:67212611-67212630 MsG0580027719.01.T01:intron 5.0%
AACTCTCTTTCTTTGGCCCC+CGG + Chr5:67212128-67212147 None:intergenic 50.0%
AGGTACACGGAGAATCCAAC+TGG + Chr5:67213297-67213316 None:intergenic 50.0%
ATTGTGAAGTGGCGAATGGG+GGG - Chr5:67210820-67210839 MsG0580027719.01.T01:intron 50.0%
CAGAAATGATCAAGCCGTGG+TGG - Chr5:67213705-67213724 MsG0580027719.01.T01:intron 50.0%
GCACGTTGTCCATAGGTAAG+GGG + Chr5:67213751-67213770 None:intergenic 50.0%
GGCTTCTATTGCACGGGATA+TGG - Chr5:67213538-67213557 MsG0580027719.01.T01:CDS 50.0%
GTAAAAGACCATGCCCATGC+AGG + Chr5:67213275-67213294 None:intergenic 50.0%
TAGGATGCAACCTTGTTCGC+AGG + Chr5:67213112-67213131 None:intergenic 50.0%
TGGTTGTCACCCCTTACCTA+TGG - Chr5:67213739-67213758 MsG0580027719.01.T01:intron 50.0%
TTCGAGAAACGTGGTGGTTG+CGG - Chr5:67210734-67210753 MsG0580027719.01.T01:intron 50.0%
! GGGCATGGTCTTTTACCAGT+TGG - Chr5:67213279-67213298 MsG0580027719.01.T01:intron 50.0%
! GGGTTGGATTTGGGACGATT+TGG + Chr5:67210573-67210592 None:intergenic 50.0%
!! GACGGTGATGTCGATTTGCA+TGG + Chr5:67210502-67210521 None:intergenic 50.0%
!! GATCAAGCCGTGGTGGATAT+GGG - Chr5:67213712-67213731 MsG0580027719.01.T01:intron 50.0%
!! GATGTCGATTTGCATGGTGG+TGG + Chr5:67210496-67210515 None:intergenic 50.0%
!! GGTGATGTCGATTTGCATGG+TGG + Chr5:67210499-67210518 None:intergenic 50.0%
!! GTGCTTTTTACCCCCAACAG+AGG + Chr5:67212018-67212037 None:intergenic 50.0%
!! TGATCAAGCCGTGGTGGATA+TGG - Chr5:67213711-67213730 MsG0580027719.01.T01:intron 50.0%
!!! TGCCCCTAGGTTGCTTTTGT+TGG - Chr5:67213065-67213084 MsG0580027719.01.T01:intron 50.0%
AAATGACCAGGGGAGTCTCC+GGG - Chr5:67212107-67212126 MsG0580027719.01.T01:CDS 55.0%
CAAATGACCAGGGGAGTCTC+CGG - Chr5:67212106-67212125 MsG0580027719.01.T01:CDS 55.0%
CATGGCATGCAATGGCATCC+CGG + Chr5:67211653-67211672 None:intergenic 55.0%
CCAGTAGCCCATATCCACCA+CGG + Chr5:67213722-67213741 None:intergenic 55.0%
GAATGGGGGGATTGTGTTGG+CGG - Chr5:67210833-67210852 MsG0580027719.01.T01:intron 55.0%
GATTTGCCCCTGTAGCAGGA+AGG - Chr5:67213369-67213388 MsG0580027719.01.T01:intron 55.0%
GCTGGGCAGAGGATGATGTA+CGG - Chr5:67210897-67210916 MsG0580027719.01.T01:intron 55.0%
GTTGGATTTGCCCCTGTAGC+AGG - Chr5:67213365-67213384 MsG0580027719.01.T01:intron 55.0%
! GGTGTTGGATCTTGAGGTGG+TGG + Chr5:67210552-67210571 None:intergenic 55.0%
! GTTGGATCTTGAGGTGGTGG+CGG + Chr5:67210549-67210568 None:intergenic 55.0%
! GTTGTGGTGGAGGAGTGGTT+TGG + Chr5:67210524-67210543 None:intergenic 55.0%
! TGGTGGAGGAGTGGTTTGGA+CGG + Chr5:67210520-67210539 None:intergenic 55.0%
!! CATGGTGGTGGATTCGTCGA+CGG + Chr5:67210484-67210503 None:intergenic 55.0%
AATGACCAGGGGAGTCTCCG+GGG - Chr5:67212108-67212127 MsG0580027719.01.T01:CDS 60.0%
CGGGATGCCATTGCATGCCA+TGG - Chr5:67211651-67211670 MsG0580027719.01.T01:intron 60.0%
CTGGGGAGGTTCGAGAAACG+TGG - Chr5:67210725-67210744 MsG0580027719.01.T01:intron 60.0%
GGCGAATGGGGGGATTGTGT+TGG - Chr5:67210830-67210849 MsG0580027719.01.T01:intron 60.0%
GGGAGCCGCGATATCATCAG+AGG + Chr5:67213218-67213237 None:intergenic 60.0%
GGGAGGTTCGAGAAACGTGG+TGG - Chr5:67210728-67210747 MsG0580027719.01.T01:intron 60.0%
! GGGGATTGTGTTGGCGGAAG+GGG - Chr5:67210839-67210858 MsG0580027719.01.T01:intron 60.0%
! GGGGGATTGTGTTGGCGGAA+GGG - Chr5:67210838-67210857 MsG0580027719.01.T01:intron 60.0%
!! CCGTGGTGGATATGGGCTAC+TGG - Chr5:67213719-67213738 MsG0580027719.01.T01:intron 60.0%
!! GCGTGTTGTTTGCTGGGCAG+AGG - Chr5:67210886-67210905 MsG0580027719.01.T01:intron 60.0%
ATGACCAGGGGAGTCTCCGG+GGG - Chr5:67212109-67212128 MsG0580027719.01.T01:CDS 65.0%
! CGGTGGTTGTGGTGGAGGAG+TGG + Chr5:67210529-67210548 None:intergenic 65.0%
! CGTGGTGGTTGCGGCGTTGA+TGG - Chr5:67210743-67210762 MsG0580027719.01.T01:intron 65.0%
! GGGGGGATTGTGTTGGCGGA+AGG - Chr5:67210837-67210856 MsG0580027719.01.T01:intron 65.0%
!! GGATCTTGAGGTGGTGGCGG+TGG + Chr5:67210546-67210565 None:intergenic 65.0%
!! GGTGGTTGCGGCGTTGATGG+AGG - Chr5:67210746-67210765 MsG0580027719.01.T01:intron 65.0%
!! TGAGGTGGTGGCGGTGGTTG+TGG + Chr5:67210540-67210559 None:intergenic 65.0%
! GGTGGCGGTGGTTGTGGTGG+AGG + Chr5:67210534-67210553 None:intergenic 70.0%
!! GGTGGTGGCGGTGGTTGTGG+TGG + Chr5:67210537-67210556 None:intergenic 70.0%
TTGGCCCCCGGAGACTCCCC+TGG + Chr5:67212116-67212135 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 67210425 67214789 67210425 ID=MsG0580027719.01;Name=MsG0580027719.01
Chr5 mRNA 67210425 67214789 67210425 ID=MsG0580027719.01.T01;Parent=MsG0580027719.01;Name=MsG0580027719.01.T01;_AED=0.33;_eAED=0.56;_QI=337|0.33|0.5|0.9|0.66|0.7|10|0|349
Chr5 exon 67214231 67214789 67214231 ID=MsG0580027719.01.T01:exon:1020;Parent=MsG0580027719.01.T01
Chr5 exon 67213937 67214009 67213937 ID=MsG0580027719.01.T01:exon:1021;Parent=MsG0580027719.01.T01
Chr5 exon 67213828 67213846 67213828 ID=MsG0580027719.01.T01:exon:1022;Parent=MsG0580027719.01.T01
Chr5 exon 67213421 67213661 67213421 ID=MsG0580027719.01.T01:exon:1023;Parent=MsG0580027719.01.T01
Chr5 exon 67211824 67212140 67211824 ID=MsG0580027719.01.T01:exon:1024;Parent=MsG0580027719.01.T01
Chr5 exon 67211404 67211506 67211404 ID=MsG0580027719.01.T01:exon:1025;Parent=MsG0580027719.01.T01
Chr5 exon 67210960 67211033 67210960 ID=MsG0580027719.01.T01:exon:1026;Parent=MsG0580027719.01.T01
Chr5 exon 67210425 67210425 67210425 ID=MsG0580027719.01.T01:exon:1027;Parent=MsG0580027719.01.T01
Chr5 five_prime_UTR 67214453 67214789 67214453 ID=MsG0580027719.01.T01:five_prime_utr;Parent=MsG0580027719.01.T01
Chr5 CDS 67214231 67214452 67214231 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Chr5 CDS 67213937 67214009 67213937 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Chr5 CDS 67213828 67213846 67213828 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Chr5 CDS 67213421 67213661 67213421 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Chr5 CDS 67211824 67212140 67211824 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Chr5 CDS 67211404 67211506 67211404 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Chr5 CDS 67210960 67211033 67210960 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Chr5 CDS 67210425 67210425 67210425 ID=MsG0580027719.01.T01:cds;Parent=MsG0580027719.01.T01
Gene Sequence

>MsG0580027719.01.T01

ATGGAGGAGAGTGAGCTTCCGTTGTCGAAGCTTGTTGATGAGATTTATGAGAAGCTGAATTGTGAAGTGGCGAATGGGGGGATTGTGTTGGCGGAAGGGGTTAATTCAGCTTTGGTGAAGAGTAGCGTGTTGTTTGCTGGGCAGAGGATGATGTACGGAATTCCCAATGCTGATGCTGATATTTTGGAAAATCATTCTGATTCATGTCTTTGGTGTTGGGAGACTAGGGAGGTTAAATTGTTGCCGAAATCTGTTCGAGGAGAGCTTGCTATTCAACGCACTTGTCGGAAAATAAGTCATTCTGATCCTGAAAATGAAAAGAAAATGGGGAATCTTATGTGTTGTGTGCAAGTTGATCAATCTCAAGTGGCTATGAGAGAAGGTTTTGGAAAATTTGAAAAGGTGCTTCAGCCGGGATGCCATTGCATGCCATGGTTTCTTGGAAAACGAATTGCTGGTCATCTCACTCTTCGGCTACAACAATTGGATATCAAATGTGAGACCAAGACAAAGGTTGGTTTGTTACTGTCTCAAACATCAATACCAAATCTTCATGTTGCTTTTGTTGGATTCGTCACATGTACAATATTCCTGCGAACAAGGTTGCATCCTACAGATGAGTCTTATGGGAGCCTTTATCTCTCTGCTCTATTCTTTGGGCTTGTTCACATGATATTTAATGGGTTTTCTGAGCTTCCTCTGATGATATCGCGGCTCCCAGTATTTTACAAGCAAAGAGATAATTTATTCTATCCTGCATGGGCATGGTCTTTTACCAGTTGGATTCTCCGTGTACCTTACTCTGTTATTGAGGCTCTTATATGGGCTGCTGTTGTATATTACAGTGTTGGATTTGCCCCTGTAGCAGGAAGAAATGATCAAGCCGTGGTGGATATGGGCTACTGGTTGTCACCCCTTACCTATGGACAACGTGCAATTACAGTTAATGAATTTACTGCTTCCAGATGGATGAAGAAATCAGCAATTGGGAACAACACAGTAGGTTACAACATCCTCGTTTCAAACAATCTACCAGTTGATGATTACTGA
Protein sequence

>MsG0580027719.01.T01

MEESELPLSKLVDEIYEKLNCEVANGGIVLAEGVNSALVKSSVLFAGQRMMYGIPNADADILENHSDSCLWCWETREVKLLPKSVRGELAIQRTCRKISHSDPENEKKMGNLMCCVQVDQSQVAMREGFGKFEKVLQPGCHCMPWFLGKRIAGHLTLRLQQLDIKCETKTKVGLLLSQTSIPNLHVAFVGFVTCTIFLRTRLHPTDESYGSLYLSALFFGLVHMIFNGFSELPLMISRLPVFYKQRDNLFYPAWAWSFTSWILRVPYSVIEALIWAAVVYYSVGFAPVAGRNDQAVVDMGYWLSPLTYGQRAITVNEFTASRWMKKSAIGNNTVGYNILVSNNLPVDDY*