Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011617.01.T01 | XP_003598099.1 | 70.548 | 146 | 6 | 1 | 1 | 109 | 1 | 146 | 1.75E-59 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011617.01.T01 | Q9LJ98 | 44.667 | 150 | 41 | 4 | 1 | 110 | 1 | 148 | 1.23E-26 | 99 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011617.01.T01 | G7J0A7 | 70.548 | 146 | 6 | 1 | 1 | 109 | 1 | 146 | 8.34e-60 | 189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0380011617.01 | 0.801183 | 1.015627e-48 | 4.819145e-46 |
| MsG0080047944.01 | MsG0380011617.01 | 0.808162 | 3.545787e-50 | 2.012844e-47 |
| MsG0080048113.01 | MsG0380011617.01 | 0.816128 | 6.487702e-52 | 4.558213e-49 |
| MsG0080048231.01 | MsG0380011617.01 | 0.831089 | 2.033966e-55 | 2.184463e-52 |
| MsG0080048874.01 | MsG0380011617.01 | 0.833925 | 4.029167e-56 | 4.708980e-53 |
| MsG0080048964.01 | MsG0380011617.01 | 0.809834 | 1.555683e-50 | 9.230353e-48 |
| MsG0180000091.01 | MsG0380011617.01 | 0.804640 | 1.960410e-49 | 1.016061e-46 |
| MsG0180000470.01 | MsG0380011617.01 | 0.852483 | 4.481061e-61 | 9.376668e-58 |
| MsG0180000914.01 | MsG0380011617.01 | 0.824332 | 8.547013e-54 | 7.547302e-51 |
| MsG0180001063.01 | MsG0380011617.01 | 0.823304 | 1.488542e-53 | 1.276806e-50 |
| MsG0180001892.01 | MsG0380011617.01 | 0.810139 | 1.337033e-50 | 7.996378e-48 |
| MsG0180002282.01 | MsG0380011617.01 | 0.833898 | 4.092882e-56 | 4.779477e-53 |
| MsG0180003669.01 | MsG0380011617.01 | 0.836822 | 7.468250e-57 | 9.521162e-54 |
| MsG0180003673.01 | MsG0380011617.01 | 0.815249 | 1.018325e-51 | 6.984121e-49 |
| MsG0180003686.01 | MsG0380011617.01 | 0.814116 | 1.815222e-51 | 1.207375e-48 |
| MsG0180004275.01 | MsG0380011617.01 | 0.823710 | 1.196118e-53 | 1.038029e-50 |
| MsG0180004331.01 | MsG0380011617.01 | 0.809072 | 2.267409e-50 | 1.318316e-47 |
| MsG0180004389.01 | MsG0380011617.01 | 0.813365 | 2.655933e-51 | 1.731058e-48 |
| MsG0180004465.01 | MsG0380011617.01 | 0.818773 | 1.645398e-52 | 1.243140e-49 |
| MsG0180004765.01 | MsG0380011617.01 | 0.805797 | 1.122187e-49 | 5.992173e-47 |
| MsG0180004928.01 | MsG0380011617.01 | 0.806475 | 8.080279e-50 | 4.389942e-47 |
| MsG0180004943.01 | MsG0380011617.01 | 0.821907 | 3.145904e-53 | 2.593566e-50 |
| MsG0180005250.01 | MsG0380011617.01 | 0.806414 | 8.322874e-50 | 4.514537e-47 |
| MsG0180005445.01 | MsG0380011617.01 | 0.804485 | 2.112177e-49 | 1.090335e-46 |
| MsG0180005708.01 | MsG0380011617.01 | 0.801457 | 8.921999e-49 | 4.262855e-46 |
| MsG0180005799.01 | MsG0380011617.01 | 0.813453 | 2.540680e-51 | 1.659934e-48 |
| MsG0180005960.01 | MsG0380011617.01 | 0.802084 | 6.634179e-49 | 3.220629e-46 |
| MsG0180006134.01 | MsG0380011617.01 | 0.837584 | 4.769632e-57 | 6.223612e-54 |
| MsG0280006299.01 | MsG0380011617.01 | 0.817249 | 3.636446e-52 | 2.634533e-49 |
| MsG0280006324.01 | MsG0380011617.01 | 0.817010 | 4.115236e-52 | 2.962172e-49 |
| MsG0280006405.01 | MsG0380011617.01 | 0.811218 | 7.815598e-51 | 4.809872e-48 |
| MsG0280010698.01 | MsG0380011617.01 | 0.812293 | 4.561297e-51 | 2.888923e-48 |
| MsG0280010722.01 | MsG0380011617.01 | 0.809065 | 2.275203e-50 | 1.322596e-47 |
| MsG0280010778.01 | MsG0380011617.01 | 0.809698 | 1.664052e-50 | 9.838006e-48 |
| MsG0280010980.01 | MsG0380011617.01 | 0.817097 | 3.933805e-52 | 2.838141e-49 |
| MsG0280011032.01 | MsG0380011617.01 | 0.817672 | 2.920868e-52 | 2.140830e-49 |
| MsG0280011472.01 | MsG0380011617.01 | 0.814627 | 1.398973e-51 | 9.435263e-49 |
| MsG0380011609.01 | MsG0380011617.01 | 0.824638 | 7.240384e-54 | 6.451240e-51 |
| MsG0380011617.01 | MsG0380012330.01 | 0.855581 | 5.729865e-62 | 1.329134e-58 |
| MsG0380011617.01 | MsG0380012361.01 | 0.819456 | 1.150507e-52 | 8.858299e-50 |
| MsG0380011617.01 | MsG0380012460.01 | 0.814665 | 1.372606e-51 | 9.266303e-49 |
| MsG0380011617.01 | MsG0380013176.01 | 0.854603 | 1.102645e-61 | 2.476112e-58 |
| MsG0380011617.01 | MsG0380014173.01 | 0.810840 | 9.436954e-51 | 5.750058e-48 |
| MsG0380011617.01 | MsG0380014248.01 | 0.802531 | 5.368285e-49 | 2.635785e-46 |
| MsG0380011617.01 | MsG0380014537.01 | 0.839436 | 1.586154e-57 | 2.190398e-54 |
| MsG0380011617.01 | MsG0380014573.01 | 0.813591 | 2.369319e-51 | 1.553719e-48 |
| MsG0380011617.01 | MsG0380014703.01 | 0.815527 | 8.833216e-52 | 6.105008e-49 |
| MsG0380011617.01 | MsG0380014981.01 | 0.803667 | 3.125022e-49 | 1.579604e-46 |
| MsG0380011617.01 | MsG0380015168.01 | 0.807615 | 4.636343e-50 | 2.594144e-47 |
| MsG0380011617.01 | MsG0380015440.01 | 0.810870 | 9.296803e-51 | 5.669256e-48 |
| MsG0380011617.01 | MsG0380015555.01 | 0.811312 | 7.455894e-51 | 4.599700e-48 |
| MsG0380011617.01 | MsG0380015566.01 | 0.807277 | 5.468058e-50 | 3.032988e-47 |
| MsG0380011617.01 | MsG0380015720.01 | 0.814279 | 1.670139e-51 | 1.115857e-48 |
| MsG0380011617.01 | MsG0380016064.01 | 0.800380 | 1.480721e-48 | 6.884772e-46 |
| MsG0380011617.01 | MsG0380016326.01 | 0.804976 | 1.668264e-49 | 8.721978e-47 |
| MsG0380011617.01 | MsG0380016355.01 | 0.818126 | 2.306323e-52 | 1.711575e-49 |
| MsG0380011617.01 | MsG0380016391.01 | 0.803149 | 4.000072e-49 | 1.995294e-46 |
| MsG0380011617.01 | MsG0380016517.01 | 0.815959 | 7.074276e-52 | 4.947532e-49 |
| MsG0380011617.01 | MsG0380016694.01 | 0.801031 | 1.090939e-48 | 5.157009e-46 |
| MsG0380011617.01 | MsG0380016695.01 | 0.803597 | 3.231587e-49 | 1.630648e-46 |
| MsG0380011617.01 | MsG0380016910.01 | 0.813580 | 2.381498e-51 | 1.561253e-48 |
| MsG0380011617.01 | MsG0380017048.01 | 0.807166 | 5.771435e-50 | 3.191950e-47 |
| MsG0380011617.01 | MsG0380017060.01 | 0.802061 | 6.706747e-49 | 3.253929e-46 |
| MsG0380011617.01 | MsG0380017326.01 | 0.818156 | 2.270684e-52 | 1.686504e-49 |
| MsG0380011617.01 | MsG0380017543.01 | 0.811415 | 7.081347e-51 | 4.380811e-48 |
| MsG0380011617.01 | MsG0480018659.01 | 0.811233 | 7.756324e-51 | 4.775339e-48 |
| MsG0380011617.01 | MsG0480018660.01 | 0.806988 | 6.295656e-50 | 3.465737e-47 |
| MsG0380011617.01 | MsG0480018778.01 | 0.804585 | 2.012567e-49 | 1.041632e-46 |
| MsG0380011617.01 | MsG0480019416.01 | 0.825502 | 4.525998e-54 | 4.132827e-51 |
| MsG0380011617.01 | MsG0480019435.01 | 0.839177 | 1.851554e-57 | 2.536417e-54 |
| MsG0380011617.01 | MsG0480019810.01 | 0.814595 | 1.421841e-51 | 9.581149e-49 |
| MsG0380011617.01 | MsG0480021215.01 | 0.816874 | 4.416678e-52 | 3.167284e-49 |
| MsG0380011617.01 | MsG0480021452.01 | 0.817028 | 4.076919e-52 | 2.935991e-49 |
| MsG0380011617.01 | MsG0480021465.01 | 0.830240 | 3.282515e-55 | 3.438837e-52 |
| MsG0380011617.01 | MsG0480021499.01 | 0.800610 | 1.329208e-48 | 6.216266e-46 |
| MsG0380011617.01 | MsG0480021501.01 | 0.813122 | 3.002462e-51 | 1.943801e-48 |
| MsG0380011617.01 | MsG0480021536.01 | 0.847913 | 8.558056e-60 | 1.544330e-56 |
| MsG0380011617.01 | MsG0480022068.01 | 0.815551 | 8.726193e-52 | 6.034900e-49 |
| MsG0380011617.01 | MsG0480022222.01 | 0.804786 | 1.827267e-49 | 9.506825e-47 |
| MsG0380011617.01 | MsG0480022259.01 | 0.823819 | 1.127952e-53 | 9.817985e-51 |
| MsG0380011617.01 | MsG0480022262.01 | 0.829841 | 4.107330e-55 | 4.254184e-52 |
| MsG0380011617.01 | MsG0480022985.01 | 0.815448 | 9.195518e-52 | 6.341775e-49 |
| MsG0380011617.01 | MsG0480023163.01 | 0.800414 | 1.457261e-48 | 6.781535e-46 |
| MsG0380011617.01 | MsG0480023463.01 | 0.805745 | 1.150925e-49 | 6.137623e-47 |
| MsG0380011617.01 | MsG0480023654.01 | 0.824941 | 6.144043e-54 | 5.521801e-51 |
| MsG0380011617.01 | MsG0580024038.01 | 0.800261 | 1.566216e-48 | 7.259989e-46 |
| MsG0380011617.01 | MsG0580024197.01 | 0.800457 | 1.428216e-48 | 6.653287e-46 |
| MsG0380011617.01 | MsG0580024305.01 | 0.805583 | 1.244697e-49 | 6.609706e-47 |
| MsG0380011617.01 | MsG0580025022.01 | 0.836111 | 1.132999e-56 | 1.413894e-53 |
| MsG0380011617.01 | MsG0580025135.01 | 0.804206 | 2.414445e-49 | 1.237454e-46 |
| MsG0380011617.01 | MsG0580025201.01 | 0.803363 | 3.612477e-49 | 1.811762e-46 |
| MsG0380011617.01 | MsG0580025448.01 | 0.813987 | 1.937616e-51 | 1.284279e-48 |
| MsG0380011617.01 | MsG0580025638.01 | 0.828706 | 7.742822e-55 | 7.756302e-52 |
| MsG0380011617.01 | MsG0580025758.01 | 0.818223 | 2.192929e-52 | 1.631706e-49 |
| MsG0380011617.01 | MsG0580026086.01 | 0.800637 | 1.312539e-48 | 6.142534e-46 |
| MsG0380011617.01 | MsG0580027031.01 | 0.800602 | 1.334350e-48 | 6.239013e-46 |
| MsG0380011617.01 | MsG0580027152.01 | 0.814761 | 1.307033e-51 | 8.846413e-49 |
| MsG0380011617.01 | MsG0580027548.01 | 0.814615 | 1.407759e-51 | 9.491269e-49 |
| MsG0380011617.01 | MsG0580027650.01 | 0.815797 | 7.690404e-52 | 5.354877e-49 |
| MsG0380011617.01 | MsG0580027719.01 | 0.835135 | 2.001262e-56 | 2.424915e-53 |
| MsG0380011617.01 | MsG0580027745.01 | 0.808713 | 2.704891e-50 | 1.557652e-47 |
| MsG0380011617.01 | MsG0580027922.01 | 0.814338 | 1.621017e-51 | 1.084762e-48 |
| MsG0380011617.01 | MsG0580027937.01 | 0.820266 | 7.509447e-53 | 5.913594e-50 |
| MsG0380011617.01 | MsG0580027947.01 | 0.812144 | 4.914044e-51 | 3.099821e-48 |
| MsG0380011617.01 | MsG0580029554.01 | 0.814396 | 1.573571e-51 | 1.054723e-48 |
| MsG0380011617.01 | MsG0580029925.01 | 0.802174 | 6.357107e-49 | 3.093145e-46 |
| MsG0380011617.01 | MsG0680030316.01 | 0.810041 | 1.404091e-50 | 8.376309e-48 |
| MsG0380011617.01 | MsG0680030447.01 | 0.800540 | 1.374076e-48 | 6.414442e-46 |
| MsG0380011617.01 | MsG0680030561.01 | 0.822121 | 2.806471e-53 | 2.327774e-50 |
| MsG0380011617.01 | MsG0680030880.01 | 0.805705 | 1.173489e-49 | 6.251523e-47 |
| MsG0380011617.01 | MsG0680030882.01 | 0.822534 | 2.249856e-53 | 1.888411e-50 |
| MsG0380011617.01 | MsG0680031355.01 | 0.806561 | 7.750590e-50 | 4.220065e-47 |
| MsG0380011617.01 | MsG0680031506.01 | 0.805703 | 1.174395e-49 | 6.256155e-47 |
| MsG0380011617.01 | MsG0680031731.01 | 0.815172 | 1.059503e-51 | 7.251042e-49 |
| MsG0380011617.01 | MsG0680032157.01 | 0.834070 | 3.706696e-56 | 4.350342e-53 |
| MsG0380011617.01 | MsG0680032360.01 | 0.803883 | 2.818512e-49 | 1.432714e-46 |
| MsG0380011617.01 | MsG0680035444.01 | 0.801685 | 8.013962e-49 | 3.850980e-46 |
| MsG0380011617.01 | MsG0680035475.01 | 0.806696 | 7.257941e-50 | 3.965394e-47 |
| MsG0380011617.01 | MsG0680035573.01 | 0.831941 | 1.254571e-55 | 1.381998e-52 |
| MsG0380011617.01 | MsG0780036080.01 | 0.834856 | 2.353608e-56 | 2.828163e-53 |
| MsG0380011617.01 | MsG0780036201.01 | 0.828884 | 7.013511e-55 | 7.061484e-52 |
| MsG0380011617.01 | MsG0780036340.01 | 0.804801 | 1.814357e-49 | 9.443401e-47 |
| MsG0380011617.01 | MsG0780037141.01 | 0.821312 | 4.317340e-53 | 3.500024e-50 |
| MsG0380011617.01 | MsG0780037146.01 | 0.817503 | 3.188388e-52 | 2.326146e-49 |
| MsG0380011617.01 | MsG0780037846.01 | 0.805866 | 1.085243e-49 | 5.805269e-47 |
| MsG0380011617.01 | MsG0780037919.01 | 0.813347 | 2.679599e-51 | 1.745634e-48 |
| MsG0380011617.01 | MsG0780038401.01 | 0.821974 | 3.035270e-53 | 2.506959e-50 |
| MsG0380011617.01 | MsG0780038439.01 | 0.817799 | 2.733337e-52 | 2.010447e-49 |
| MsG0380011617.01 | MsG0780039171.01 | 0.836177 | 1.090406e-56 | 1.363584e-53 |
| MsG0380011617.01 | MsG0780039443.01 | 0.806127 | 9.563820e-50 | 5.150062e-47 |
| MsG0380011617.01 | MsG0780040057.01 | 0.805622 | 1.221269e-49 | 6.491845e-47 |
| MsG0380011617.01 | MsG0780040704.01 | 0.830641 | 2.619931e-55 | 2.776753e-52 |
| MsG0380011617.01 | MsG0780040734.01 | 0.806843 | 6.756986e-50 | 3.705905e-47 |
| MsG0380011617.01 | MsG0780041416.01 | 0.815947 | 7.120419e-52 | 4.977923e-49 |
| MsG0380011617.01 | MsG0880041836.01 | 0.814427 | 1.549095e-51 | 1.039149e-48 |
| MsG0380011617.01 | MsG0880042031.01 | 0.821625 | 3.655094e-53 | 2.989155e-50 |
| MsG0380011617.01 | MsG0880042518.01 | 0.803634 | 3.174521e-49 | 1.603302e-46 |
| MsG0380011617.01 | MsG0880042966.01 | 0.804233 | 2.383618e-49 | 1.222470e-46 |
| MsG0380011617.01 | MsG0880043479.01 | 0.818197 | 2.222074e-52 | 1.652291e-49 |
| MsG0380011617.01 | MsG0880043812.01 | 0.803866 | 2.840838e-49 | 1.443472e-46 |
| MsG0380011617.01 | MsG0880043941.01 | 0.812808 | 3.518589e-51 | 2.258890e-48 |
| MsG0380011617.01 | MsG0880044574.01 | 0.805711 | 1.169771e-49 | 6.232706e-47 |
| MsG0380011617.01 | MsG0880044748.01 | 0.807561 | 4.759877e-50 | 2.659570e-47 |
| MsG0380011617.01 | MsG0880044967.01 | 0.800915 | 1.152158e-48 | 5.430291e-46 |
| MsG0380011617.01 | MsG0880045111.01 | 0.804106 | 2.533027e-49 | 1.294952e-46 |
| MsG0380011617.01 | MsG0880045362.01 | 0.804605 | 1.993384e-49 | 1.032227e-46 |
| MsG0380011617.01 | MsG0880045372.01 | 0.824006 | 1.019846e-53 | 8.922350e-51 |
| MsG0380011617.01 | MsG0880045736.01 | 0.821238 | 4.491193e-53 | 3.633542e-50 |
| MsG0380011617.01 | MsG0880045937.01 | 0.821167 | 4.663303e-53 | 3.765342e-50 |
| MsG0380011617.01 | MsG0880046020.01 | 0.801786 | 7.640660e-49 | 3.681119e-46 |
| MsG0380011617.01 | MsG0880047144.01 | 0.802400 | 5.712571e-49 | 2.795678e-46 |
| MsG0380011617.01 | MsG0880047472.01 | 0.803133 | 4.031614e-49 | 2.010097e-46 |
| MsG0280006491.01 | MsG0380011617.01 | 0.806800 | 6.897382e-50 | 3.778660e-47 |
| MsG0280007872.01 | MsG0380011617.01 | 0.800261 | 1.566216e-48 | 7.259989e-46 |
| MsG0280007955.01 | MsG0380011617.01 | 0.832869 | 7.388144e-56 | 8.364986e-53 |
| MsG0280008076.01 | MsG0380011617.01 | 0.809372 | 1.955049e-50 | 1.145879e-47 |
| MsG0280008112.01 | MsG0380011617.01 | 0.818080 | 2.362450e-52 | 1.750890e-49 |
| MsG0280008377.01 | MsG0380011617.01 | 0.806278 | 8.890398e-50 | 4.805903e-47 |
| MsG0280008615.01 | MsG0380011617.01 | 0.833547 | 5.010263e-56 | 5.788931e-53 |
| MsG0280008648.01 | MsG0380011617.01 | 0.838699 | 2.462709e-57 | 3.324980e-54 |
| MsG0280009024.01 | MsG0380011617.01 | 0.820107 | 8.167417e-53 | 6.404569e-50 |
| MsG0280009421.01 | MsG0380011617.01 | 0.834947 | 2.231474e-56 | 2.689017e-53 |
| MsG0280009646.01 | MsG0380011617.01 | 0.815692 | 8.115342e-52 | 5.634357e-49 |
| MsG0280010117.01 | MsG0380011617.01 | 0.806328 | 8.677951e-50 | 4.696953e-47 |
| MsG0280010443.01 | MsG0380011617.01 | 0.822881 | 1.868764e-53 | 1.583967e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011617.01.T01 | MTR_3g007250 | 70.548 | 146 | 6 | 1 | 1 | 109 | 1 | 146 | 2.11e-63 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011617.01.T01 | AT3G22480 | 44.667 | 150 | 41 | 4 | 1 | 110 | 1 | 148 | 1.25e-27 | 99.0 |
| MsG0380011617.01.T01 | AT3G22480 | 44.667 | 150 | 41 | 4 | 1 | 110 | 1 | 148 | 1.25e-27 | 99.0 |
Find 30 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCAAGCTCCGTAATTT+TGG | 0.220078 | 3:-2472719 | None:intergenic |
| GCAAGTGCTTGTTCATTTAC+TGG | 0.240244 | 3:-2472652 | None:intergenic |
| CTGCTGTGCAGCGAAATAAA+AGG | 0.380079 | 3:+2472857 | MsG0380011617.01.T01:intron |
| CAAAATTACGGAGCTTGAAA+TGG | 0.381749 | 3:+2472720 | MsG0380011617.01.T01:CDS |
| GGAGTACTTGTGGGCCCTGC+AGG | 0.391963 | 3:+2473028 | MsG0380011617.01.T01:CDS |
| CCAAATTTACACCAAAATTA+CGG | 0.395846 | 3:+2472708 | MsG0380011617.01.T01:CDS |
| CAGCATCGGCCTTCCTCATC+CGG | 0.415801 | 3:-2472964 | None:intergenic |
| AGACATTGGAAAAGAAGAAA+AGG | 0.423618 | 3:+2472909 | MsG0380011617.01.T01:CDS |
| TGTCATTTGCTACCACCTGC+AGG | 0.484824 | 3:-2473043 | None:intergenic |
| TTGAGACTAAATATAAAATC+CGG | 0.490885 | 3:+2472945 | MsG0380011617.01.T01:CDS |
| TCTGCTCAAGGAGTACTTGT+GGG | 0.504138 | 3:+2473019 | MsG0380011617.01.T01:CDS |
| GTGTAGAATCATGGCTAGTA+AGG | 0.508954 | 3:+2472612 | None:intergenic |
| GACATTGGAAAAGAAGAAAA+GGG | 0.510315 | 3:+2472910 | MsG0380011617.01.T01:CDS |
| GCTGAGGTGAACGATGAATC+TGG | 0.515292 | 3:+2472983 | MsG0380011617.01.T01:CDS |
| TGCAAGGCTTAACAAGACAT+TGG | 0.518757 | 3:+2472895 | MsG0380011617.01.T01:CDS |
| GTACTTGTGGGCCCTGCAGG+TGG | 0.539955 | 3:+2473031 | MsG0380011617.01.T01:CDS |
| GAACGATGAATCTGGTAAGA+AGG | 0.544140 | 3:+2472991 | MsG0380011617.01.T01:CDS |
| GATGAGGAAGGCCGATGCTG+AGG | 0.574674 | 3:+2472967 | MsG0380011617.01.T01:CDS |
| AAGAAGGAAGGTTCTGCTCA+AGG | 0.575142 | 3:+2473007 | MsG0380011617.01.T01:CDS |
| TTCATCGTTCACCTCAGCAT+CGG | 0.575473 | 3:-2472978 | None:intergenic |
| CAAATATATATGCAGCTATG+AGG | 0.582009 | 3:+2472674 | MsG0380011617.01.T01:CDS |
| CGAAATAAAAGGACTTGAAG+AGG | 0.583338 | 3:+2472868 | MsG0380011617.01.T01:CDS |
| ATATAAAATCCGGATGAGGA+AGG | 0.583660 | 3:+2472955 | MsG0380011617.01.T01:CDS |
| TTCTGCTCAAGGAGTACTTG+TGG | 0.584158 | 3:+2473018 | MsG0380011617.01.T01:CDS |
| GATGAATCTGGTAAGAAGGA+AGG | 0.587326 | 3:+2472995 | MsG0380011617.01.T01:CDS |
| CTAAATATAAAATCCGGATG+AGG | 0.587775 | 3:+2472951 | MsG0380011617.01.T01:CDS |
| GACTTGAAGAGGTTGTTGCA+AGG | 0.593695 | 3:+2472879 | MsG0380011617.01.T01:CDS |
| GTCATTTGCTACCACCTGCA+GGG | 0.594429 | 3:-2473042 | None:intergenic |
| TAGTAAGGCGGAAGATCGCA+AGG | 0.597879 | 3:+2472627 | MsG0380011617.01.T01:CDS |
| TAGAATCATGGCTAGTAAGG+CGG | 0.646340 | 3:+2472615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGACTAAATATAAAATC+CGG | + | Chr3:2472945-2472964 | MsG0380011617.01.T01:CDS | 20.0% |
| ! | CCAAATTTACACCAAAATTA+CGG | + | Chr3:2472708-2472727 | MsG0380011617.01.T01:CDS | 25.0% |
| AGACATTGGAAAAGAAGAAA+AGG | + | Chr3:2472909-2472928 | MsG0380011617.01.T01:CDS | 30.0% | |
| CAAATATATATGCAGCTATG+AGG | + | Chr3:2472674-2472693 | MsG0380011617.01.T01:CDS | 30.0% | |
| CTAAATATAAAATCCGGATG+AGG | + | Chr3:2472951-2472970 | MsG0380011617.01.T01:CDS | 30.0% | |
| GACATTGGAAAAGAAGAAAA+GGG | + | Chr3:2472910-2472929 | MsG0380011617.01.T01:CDS | 30.0% | |
| !! | CCGTAATTTTGGTGTAAATT+TGG | - | Chr3:2472711-2472730 | None:intergenic | 30.0% |
| !! | TTTTGGTGTAAATTTGGTTG+AGG | - | Chr3:2472705-2472724 | None:intergenic | 30.0% |
| ATATAAAATCCGGATGAGGA+AGG | + | Chr3:2472955-2472974 | MsG0380011617.01.T01:CDS | 35.0% | |
| CAAAATTACGGAGCTTGAAA+TGG | + | Chr3:2472720-2472739 | MsG0380011617.01.T01:CDS | 35.0% | |
| CGAAATAAAAGGACTTGAAG+AGG | + | Chr3:2472868-2472887 | MsG0380011617.01.T01:CDS | 35.0% | |
| ! | CATTTCAAGCTCCGTAATTT+TGG | - | Chr3:2472722-2472741 | None:intergenic | 35.0% |
| AGACGATGCTATCGAATGAT+CGG | + | Chr3:2472796-2472815 | MsG0380011617.01.T01:intron | 40.0% | |
| GAACGATGAATCTGGTAAGA+AGG | + | Chr3:2472991-2473010 | MsG0380011617.01.T01:CDS | 40.0% | |
| GATGAATCTGGTAAGAAGGA+AGG | + | Chr3:2472995-2473014 | MsG0380011617.01.T01:CDS | 40.0% | |
| GCAAGTGCTTGTTCATTTAC+TGG | - | Chr3:2472655-2472674 | None:intergenic | 40.0% | |
| TCTTAATGCTATTCAGCTGC+TGG | + | Chr3:2472765-2472784 | MsG0380011617.01.T01:intron | 40.0% | |
| TGCAAGGCTTAACAAGACAT+TGG | + | Chr3:2472895-2472914 | MsG0380011617.01.T01:CDS | 40.0% | |
| TGTGGAAAGAACTGTCAAAG+AGG | + | Chr3:2472828-2472847 | MsG0380011617.01.T01:intron | 40.0% | |
| TTCGATAGCATCGTCTAGAT+TGG | - | Chr3:2472792-2472811 | None:intergenic | 40.0% | |
| !! | TTTTATTTCGCTGCACAGCA+GGG | - | Chr3:2472858-2472877 | None:intergenic | 40.0% |
| AAGAAGGAAGGTTCTGCTCA+AGG | + | Chr3:2473007-2473026 | MsG0380011617.01.T01:CDS | 45.0% | |
| ATGCTATCGAATGATCGGAG+GGG | + | Chr3:2472801-2472820 | MsG0380011617.01.T01:intron | 45.0% | |
| CTGCTGTGCAGCGAAATAAA+AGG | + | Chr3:2472857-2472876 | MsG0380011617.01.T01:intron | 45.0% | |
| GACTTGAAGAGGTTGTTGCA+AGG | + | Chr3:2472879-2472898 | MsG0380011617.01.T01:CDS | 45.0% | |
| GATGCTATCGAATGATCGGA+GGG | + | Chr3:2472800-2472819 | MsG0380011617.01.T01:intron | 45.0% | |
| TTCATCGTTCACCTCAGCAT+CGG | - | Chr3:2472981-2473000 | None:intergenic | 45.0% | |
| !! | CTTTTATTTCGCTGCACAGC+AGG | - | Chr3:2472859-2472878 | None:intergenic | 45.0% |
| !! | TCTGCTCAAGGAGTACTTGT+GGG | + | Chr3:2473019-2473038 | MsG0380011617.01.T01:CDS | 45.0% |
| !! | TTCTGCTCAAGGAGTACTTG+TGG | + | Chr3:2473018-2473037 | MsG0380011617.01.T01:CDS | 45.0% |
| CGATGCTATCGAATGATCGG+AGG | + | Chr3:2472799-2472818 | MsG0380011617.01.T01:intron | 50.0% | |
| GCTGAGGTGAACGATGAATC+TGG | + | Chr3:2472983-2473002 | MsG0380011617.01.T01:CDS | 50.0% | |
| TAGTAAGGCGGAAGATCGCA+AGG | + | Chr3:2472627-2472646 | MsG0380011617.01.T01:CDS | 50.0% | |
| !! | AATGATCGGAGGGGTGCTTG+TGG | + | Chr3:2472810-2472829 | MsG0380011617.01.T01:intron | 55.0% |
| GATGAGGAAGGCCGATGCTG+AGG | + | Chr3:2472967-2472986 | MsG0380011617.01.T01:CDS | 60.0% | |
| GGAAGTCAGCGAGCACTCGT+TGG | + | Chr3:2472741-2472760 | MsG0380011617.01.T01:intron | 60.0% | |
| !! | CAGCATCGGCCTTCCTCATC+CGG | - | Chr3:2472967-2472986 | None:intergenic | 60.0% |
| GTACTTGTGGGCCCTGCAGG+TGG | + | Chr3:2473031-2473050 | MsG0380011617.01.T01:CDS | 65.0% | |
| ! | GGAGTACTTGTGGGCCCTGC+AGG | + | Chr3:2473028-2473047 | MsG0380011617.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 2472622 | 2473063 | 2472622 | ID=MsG0380011617.01;Name=MsG0380011617.01 |
| Chr3 | mRNA | 2472622 | 2473063 | 2472622 | ID=MsG0380011617.01.T01;Parent=MsG0380011617.01;Name=MsG0380011617.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|110 |
| Chr3 | exon | 2472622 | 2472758 | 2472622 | ID=MsG0380011617.01.T01:exon:805;Parent=MsG0380011617.01.T01 |
| Chr3 | exon | 2472868 | 2473063 | 2472868 | ID=MsG0380011617.01.T01:exon:806;Parent=MsG0380011617.01.T01 |
| Chr3 | CDS | 2472622 | 2472758 | 2472622 | ID=MsG0380011617.01.T01:cds;Parent=MsG0380011617.01.T01 |
| Chr3 | CDS | 2472868 | 2473063 | 2472868 | ID=MsG0380011617.01.T01:cds;Parent=MsG0380011617.01.T01 |
| Gene Sequence |
| Protein sequence |
