AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032642.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032642.01.T01 MTR_6g045483 96.718 457 9 1 1 457 1 451 0.0 891
MsG0680032642.01.T01 MTR_6g045483 96.718 457 9 1 1 457 1 451 0.0 889
MsG0680032642.01.T01 MTR_6g045483 96.718 457 9 1 1 457 1 451 0.0 889
MsG0680032642.01.T01 MTR_8g038580 92.779 457 33 0 1 457 1 457 0.0 865
MsG0680032642.01.T01 MTR_6g045483 96.193 394 9 1 1 394 1 388 0.0 764
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032642.01.T01 AT1G02260 65.293 461 112 5 1 457 1 417 0.0 598
MsG0680032642.01.T01 AT1G02260 65.293 461 112 5 1 457 1 417 0.0 598

Find 89 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGAATTCCAAGTGCTTTA+TGG 0.120821 6:-46632650 MsG0680032642.01.T01:CDS
TATACTTGTCCTATCAAATT+TGG 0.170342 6:-46632565 MsG0680032642.01.T01:CDS
TTAATTTGAAGAGGGAATTT+TGG 0.190758 6:-46628477 MsG0680032642.01.T01:intron
AAGTGCTTTATGGGAGTTAA+TGG 0.236932 6:-46632640 MsG0680032642.01.T01:CDS
ATTGAACCTAAAACAACTTT+TGG 0.239033 6:+46633967 None:intergenic
AAATTCCATGGTAATGTTAA+TGG 0.251070 6:-46634056 MsG0680032642.01.T01:five_prime_UTR
ACATAGGAAAGTTACTTTCT+TGG 0.262811 6:-46633726 MsG0680032642.01.T01:CDS
TGTGTTTATATGATTACATT+AGG 0.308469 6:-46632935 MsG0680032642.01.T01:CDS
TACTCTTCTCCCTTTCCATT+TGG 0.316608 6:-46628420 MsG0680032642.01.T01:CDS
TGGAATTCCAAGTGCTTTAT+GGG 0.317249 6:-46632649 MsG0680032642.01.T01:CDS
CATTTGATGCCAAATTTGAT+AGG 0.320948 6:+46632556 None:intergenic
GAACGATCAACTCGTGAATA+AGG 0.329731 6:+46632615 None:intergenic
CGCTATCACTTGAAATCATT+CGG 0.331547 6:+46633179 None:intergenic
AGCAGGGAACCTGTCACTAT+TGG 0.339407 6:-46628353 MsG0680032642.01.T01:CDS
TCAGCTGCAACTTCCGCAAT+AGG 0.340152 6:+46633340 None:intergenic
CCTCTTAGGTGCAATGCTTA+TGG 0.341098 6:-46633869 MsG0680032642.01.T01:CDS
GGAATGTTTATCACAGTAGA+TGG 0.344038 6:-46632684 MsG0680032642.01.T01:CDS
GCAGGGAACCTGTCACTATT+GGG 0.344745 6:-46628352 MsG0680032642.01.T01:CDS
GTAGATGGATTCAACAAAAC+TGG 0.348050 6:-46632669 MsG0680032642.01.T01:CDS
CTTCTCCCTTTCCATTTGGC+TGG 0.350876 6:-46628416 MsG0680032642.01.T01:CDS
TTCCATTTGGCTGGACTAAA+GGG 0.353225 6:-46628407 MsG0680032642.01.T01:CDS
GTTCTACCAATTGGTAGAAA+TGG 0.355990 6:+46633901 None:intergenic
AGAAGGGACTAATAATGATT+TGG 0.366413 6:-46633095 MsG0680032642.01.T01:CDS
ATTGTTCCAGCTATGCTTGT+AGG 0.381023 6:-46633436 MsG0680032642.01.T01:CDS
TTTCCATTTGGCTGGACTAA+AGG 0.382195 6:-46628408 MsG0680032642.01.T01:CDS
TGATTCTTATAGCTATGTAT+TGG 0.385215 6:-46633396 MsG0680032642.01.T01:CDS
AAAATACAAACTTGTGGTAT+AGG 0.390355 6:-46634846 MsG0680032642.01.T01:five_prime_UTR
ATTGCAGCGTACGCTTCTTC+CGG 0.394105 6:+46633826 None:intergenic
AGAACAGCAGGATCCCTCTT+AGG 0.394169 6:-46633883 MsG0680032642.01.T01:CDS
TATGTCGTGGACTGCAATTT+CGG 0.400089 6:-46632882 MsG0680032642.01.T01:CDS
CAAGTGATAGCGAAATTGAT+AGG 0.401436 6:-46633168 MsG0680032642.01.T01:CDS
CTAAAGGGCATGGCTCATAT+TGG 0.417790 6:-46628392 MsG0680032642.01.T01:CDS
GCAGTTCCATTTCTACCAAT+TGG 0.420465 6:-46633907 MsG0680032642.01.T01:CDS
GGTTCCTCGGCTACGCCAAT+TGG 0.424218 6:-46633523 MsG0680032642.01.T01:CDS
ATGTTGATTGCAATGCTTCT+TGG 0.424623 6:-46632911 MsG0680032642.01.T01:CDS
GCAATCGATCTTCCAATTCT+CGG 0.438203 6:-46633808 MsG0680032642.01.T01:CDS
CTTAATTCTCAAGAGTTGAA+TGG 0.444464 6:-46633259 MsG0680032642.01.T01:CDS
AATTTCGGCTGCATTAGCTT+TGG 0.452114 6:-46632867 MsG0680032642.01.T01:CDS
GTCGAGAGCAAAATTTCATT+CGG 0.457429 6:-46633475 MsG0680032642.01.T01:CDS
TTACTTTCTTGGAAAAGTAA+AGG 0.459923 6:-46633715 MsG0680032642.01.T01:CDS
CCATAAGCATTGCACCTAAG+AGG 0.463472 6:+46633869 None:intergenic
ACAACTCCTACAAGCATAGC+TGG 0.466657 6:+46633430 None:intergenic
GCTTGGGTCAGCACTATAGC+AGG 0.474992 6:-46628370 MsG0680032642.01.T01:CDS
ATTGGTAGAAATGGAACTGC+TGG 0.479127 6:+46633910 None:intergenic
CTACCAATTGGTAGAACAGC+AGG 0.479216 6:-46633895 MsG0680032642.01.T01:CDS
TATAGTACCTTCTCTAAACT+TGG 0.480464 6:+46632818 None:intergenic
GAAGTAGATAGAACAATAGA+AGG 0.481433 6:-46633028 MsG0680032642.01.T01:CDS
GATCCTGCTGTTCTACCAAT+TGG 0.482125 6:+46633892 None:intergenic
GGCATGGCTCATATTGGCTT+GGG 0.482781 6:-46628386 MsG0680032642.01.T01:CDS
AATTCAACTGCATCAAAAGA+AGG 0.484658 6:-46633112 MsG0680032642.01.T01:CDS
AAGTGCTAACATTGGTTCCT+CGG 0.489479 6:-46633536 MsG0680032642.01.T01:CDS
GGGCATGGCTCATATTGGCT+TGG 0.490306 6:-46628387 MsG0680032642.01.T01:CDS
TTTGGTTGAGTTGTCTAACT+TGG 0.499458 6:+46634799 None:intergenic
TGGTAATGTTAATGGACTAA+AGG 0.506008 6:-46634048 MsG0680032642.01.T01:five_prime_UTR
TGCCCTTTAGTCCAGCCAAA+TGG 0.507928 6:+46628405 None:intergenic
TTGGCATCAAATGTACCAAC+CGG 0.512398 6:-46632546 MsG0680032642.01.T01:intron
CAGCTGACCCCAATAGTGAC+AGG 0.523759 6:+46628344 None:intergenic
TTTCGTAGATTATGAACTTG+AGG 0.530794 6:+46633202 None:intergenic
TTGGAAAAGTAAAGGTGCAA+AGG 0.533404 6:-46633707 MsG0680032642.01.T01:CDS
TGTTCTATCTACTTCGACAA+CGG 0.538660 6:+46633036 None:intergenic
GAATAATGAGACATTGTAGC+TGG 0.539645 6:+46633289 None:intergenic
TGATTTGGCATCTCAAACAA+AGG 0.541519 6:-46633080 MsG0680032642.01.T01:CDS
CATAAGCATTGCACCTAAGA+GGG 0.542978 6:+46633870 None:intergenic
TTAGTCCAGCCAAATGGAAA+GGG 0.545661 6:+46628411 None:intergenic
TTTGATCAGTTCGGAAGGAA+AGG 0.549142 6:-46632999 MsG0680032642.01.T01:CDS
TTCTTGATTTCAAAGATGCT+AGG 0.551545 6:-46632841 MsG0680032642.01.T01:CDS
ATTAACTCCCATAAAGCACT+TGG 0.552200 6:+46632642 None:intergenic
TAATGTTAATGGACTAAAGG+TGG 0.560100 6:-46634045 MsG0680032642.01.T01:five_prime_UTR
TACAAACTTGTGGTATAGGA+AGG 0.560938 6:-46634842 MsG0680032642.01.T01:five_prime_UTR
TTCTTGGTTTAAATATGTCG+TGG 0.568745 6:-46632895 MsG0680032642.01.T01:CDS
GCAGATATGTTCAAATACAT+AGG 0.569867 6:-46633742 MsG0680032642.01.T01:CDS
TTTAGTCCAGCCAAATGGAA+AGG 0.588901 6:+46628410 None:intergenic
ATTCAACTGCATCAAAAGAA+GGG 0.589713 6:-46633111 MsG0680032642.01.T01:CDS
TGCTAGGCCAAGTTTAGAGA+AGG 0.593210 6:-46632825 MsG0680032642.01.T01:intron
TTAGTCCATTAACATTACCA+TGG 0.595910 6:+46634051 None:intergenic
CTTGCTTCAAGTGCTAACAT+TGG 0.596827 6:-46633544 MsG0680032642.01.T01:CDS
TCACGAGTTGATCGTTCTAG+CGG 0.597345 6:-46632609 MsG0680032642.01.T01:CDS
GAAATTGATAGGTTTCATGT+TGG 0.608915 6:-46633157 MsG0680032642.01.T01:CDS
CAGGGAACCTGTCACTATTG+GGG 0.616991 6:-46628351 MsG0680032642.01.T01:CDS
TTTGGCTGGACTAAAGGGCA+TGG 0.619379 6:-46628402 MsG0680032642.01.T01:CDS
AATATTCAGAGTTATTACTC+CGG 0.627366 6:-46633845 MsG0680032642.01.T01:CDS
ATCTGTTCATAAAGATATCG+AGG 0.627397 6:-46633365 MsG0680032642.01.T01:CDS
GTTACCAATTGGCGTAGCCG+AGG 0.632022 6:+46633519 None:intergenic
TAATATCCAGAAAATTGCAA+AGG 0.641731 6:+46633942 None:intergenic
AGATATCGAGGATCCTATTG+CGG 0.653537 6:-46633353 MsG0680032642.01.T01:CDS
TTTGGCATCTCAAACAAAGG+AGG 0.664262 6:-46633077 MsG0680032642.01.T01:CDS
CTGAGTGGAAGCGTAGACTG+TGG 0.666710 6:-46632964 MsG0680032642.01.T01:CDS
AGGACTGTTTAAGCGCTGAG+TGG 0.679075 6:-46632979 MsG0680032642.01.T01:CDS
CTTGGGTCAGCACTATAGCA+GGG 0.686858 6:-46628369 MsG0680032642.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAAATATATATAATATTT+CGG - Chr6:46634166-46634185 MsG0680032642.01.T01:intron 10.0%
!! ATTTATATAACATAATTAGT+TGG - Chr6:46632040-46632059 MsG0680032642.01.T01:intron 10.0%
!!! AATCTTTTATTTCAATTTTA+TGG + Chr6:46628591-46628610 None:intergenic 10.0%
!!! CAAATTAATTTATAAGATTT+TGG + Chr6:46634745-46634764 None:intergenic 10.0%
!!! GTACTTTTTTTTTTTTTTTA+AGG + Chr6:46628331-46628350 None:intergenic 10.0%
!!! TTTTTTAAAAGATAAATACA+AGG - Chr6:46632246-46632265 MsG0680032642.01.T01:intron 10.0%
!! GGAAATATATATAATATTTC+GGG - Chr6:46634167-46634186 MsG0680032642.01.T01:intron 15.0%
!! TTCTAATAATAATTCAGATA+AGG - Chr6:46633685-46633704 MsG0680032642.01.T01:CDS 15.0%
!!! AAAATAGATTTTTCTTTTCA+AGG - Chr6:46628456-46628475 MsG0680032642.01.T01:CDS 15.0%
!!! ATAATTGATTATTATTTTGC+AGG + Chr6:46633425-46633444 None:intergenic 15.0%
!!! ATTTTATGGTATAGTAAATT+TGG + Chr6:46628577-46628596 None:intergenic 15.0%
!!! CTTATAAATTAATTTGAAGA+GGG - Chr6:46634749-46634768 MsG0680032642.01.T01:intron 15.0%
!!! TATAAGATTTTGGATTAATA+GGG + Chr6:46634735-46634754 None:intergenic 15.0%
!!! TCTTATAAATTAATTTGAAG+AGG - Chr6:46634748-46634767 MsG0680032642.01.T01:intron 15.0%
!!! TGAAAAGAAAAATCTATTTT+TGG + Chr6:46628456-46628475 None:intergenic 15.0%
!!! TGAAATTAGAAATATCATTT+TGG - Chr6:46633187-46633206 MsG0680032642.01.T01:CDS 15.0%
!!! TTATAAGATTTTGGATTAAT+AGG + Chr6:46634736-46634755 None:intergenic 15.0%
!!! TTTTAACTCTAAAATTTTCA+AGG + Chr6:46631319-46631338 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTCTTCGT+AGG - Chr6:46630876-46630895 MsG0680032642.01.T01:intron 15.0%
!! ATCATTAATCTCCAATTTAA+AGG - Chr6:46630900-46630919 MsG0680032642.01.T01:intron 20.0%
!! GACATATTATACAAGAATAA+TGG - Chr6:46634677-46634696 MsG0680032642.01.T01:intron 20.0%
!! GGGTATTAAAAAAAAAATTG+AGG - Chr6:46632405-46632424 MsG0680032642.01.T01:intron 20.0%
!! TCTTCGAATATGATTTATAT+CGG + Chr6:46633535-46633554 None:intergenic 20.0%
!! TGTGTTTATATGATTACATT+AGG - Chr6:46630299-46630318 MsG0680032642.01.T01:intron 20.0%
!! TTCTTGATATACAAGTTAAA+TGG - Chr6:46631731-46631750 MsG0680032642.01.T01:intron 20.0%
!!! AAAGAGATAAACTTTTTGAA+AGG + Chr6:46628354-46628373 None:intergenic 20.0%
!!! AAAGGTTAAATTTCTTTTCA+TGG - Chr6:46629098-46629117 MsG0680032642.01.T01:intron 20.0%
!!! AACATTTTGTTTAAGGAAAA+TGG + Chr6:46628520-46628539 None:intergenic 20.0%
!!! AAGAGATAAACTTTTTGAAA+GGG + Chr6:46628353-46628372 None:intergenic 20.0%
!!! AATTTCTAGAATCAAGTATA+GGG + Chr6:46634407-46634426 None:intergenic 20.0%
!!! AATTTTTTTCTTGTTGATAC+AGG - Chr6:46630498-46630517 MsG0680032642.01.T01:intron 20.0%
!!! AGAATCTAACTCAAAATTTT+GGG + Chr6:46633056-46633075 None:intergenic 20.0%
!!! ATAAGTTTTGATTTTATCAC+TGG + Chr6:46632194-46632213 None:intergenic 20.0%
!!! ATCTAACTATTTTCTATTTC+TGG - Chr6:46628690-46628709 MsG0680032642.01.T01:intron 20.0%
!!! ATCTTTATACTTGTCTTTTT+TGG + Chr6:46633660-46633679 None:intergenic 20.0%
!!! ATTATACAAGAATAATGGAA+GGG - Chr6:46634682-46634701 MsG0680032642.01.T01:intron 20.0%
!!! ATTTGATTTCACCTTTAAAT+TGG + Chr6:46630914-46630933 None:intergenic 20.0%
!!! CTTATTTTTTTGACATTGAT+TGG + Chr6:46633137-46633156 None:intergenic 20.0%
!!! TAATTTCTAGAATCAAGTAT+AGG + Chr6:46634408-46634427 None:intergenic 20.0%
!!! TATTATACAAGAATAATGGA+AGG - Chr6:46634681-46634700 MsG0680032642.01.T01:intron 20.0%
!!! TCATCTTAACATTTTGTTTA+AGG + Chr6:46628527-46628546 None:intergenic 20.0%
!!! TGATTCTAGAAATTATTGAA+GGG - Chr6:46634413-46634432 MsG0680032642.01.T01:intron 20.0%
!!! TGCAATTTTCAATATGAATT+CGG + Chr6:46629631-46629650 None:intergenic 20.0%
!!! TTGATTCTAGAAATTATTGA+AGG - Chr6:46634412-46634431 MsG0680032642.01.T01:intron 20.0%
! AAAAACTAAATCTGTATAGG+TGG - Chr6:46634559-46634578 MsG0680032642.01.T01:intron 25.0%
! AAAATACAAACTTGTGGTAT+AGG - Chr6:46628388-46628407 MsG0680032642.01.T01:CDS 25.0%
! AAGATCTTTCACTATAGTAT+TGG + Chr6:46632791-46632810 None:intergenic 25.0%
! AATATTCAGAGTTATTACTC+CGG - Chr6:46629389-46629408 MsG0680032642.01.T01:intron 25.0%
! AATCAATTATACAATACCTG+AGG - Chr6:46633435-46633454 MsG0680032642.01.T01:CDS 25.0%
! AATTACCATAAGTAATCTTG+AGG - Chr6:46633912-46633931 MsG0680032642.01.T01:CDS 25.0%
! ACTATTATAGTTACTGCTAT+TGG - Chr6:46631628-46631647 MsG0680032642.01.T01:intron 25.0%
! AGGAAAAACTAAATCTGTAT+AGG - Chr6:46634556-46634575 MsG0680032642.01.T01:intron 25.0%
! ATAAACAATGAAATCTCAAG+AGG + Chr6:46631925-46631944 None:intergenic 25.0%
! ATGACAAAAATACAAACTTG+TGG - Chr6:46628382-46628401 MsG0680032642.01.T01:CDS 25.0%
! CAAATTCCTCATGATTTATT+AGG - Chr6:46633506-46633525 MsG0680032642.01.T01:CDS 25.0%
! CACTATTATCCATCAATTAA+AGG + Chr6:46634520-46634539 None:intergenic 25.0%
! CAGTAACTATAATAGTTGAA+GGG + Chr6:46631624-46631643 None:intergenic 25.0%
! CATATCATAAATGTGGAAAA+AGG - Chr6:46633828-46633847 MsG0680032642.01.T01:CDS 25.0%
! CTTCAGTTTCTAAATTGTAA+GGG + Chr6:46630783-46630802 None:intergenic 25.0%
! CTTCGAATATGATTTATATC+GGG + Chr6:46633534-46633553 None:intergenic 25.0%
! GAAAAATGTAAACACAAGAT+TGG + Chr6:46631384-46631403 None:intergenic 25.0%
! GAGAATAGATATGTTTAAGA+TGG + Chr6:46628838-46628857 None:intergenic 25.0%
! TAATATCCAGAAAATTGCAA+AGG + Chr6:46629295-46629314 None:intergenic 25.0%
! TATACTTGTCCTATCAAATT+TGG - Chr6:46630669-46630688 MsG0680032642.01.T01:intron 25.0%
! TATTCTTGTGATCATTGTTT+GGG - Chr6:46632822-46632841 MsG0680032642.01.T01:intron 25.0%
! TATTTCGAATCTTTCTAACA+GGG + Chr6:46634249-46634268 None:intergenic 25.0%
! TCTTCAAAATACAATACGAA+AGG + Chr6:46633003-46633022 None:intergenic 25.0%
! TCTTCAGTTTCTAAATTGTA+AGG + Chr6:46630784-46630803 None:intergenic 25.0%
! TGATTCAATGATCAAAATCA+AGG - Chr6:46631843-46631862 MsG0680032642.01.T01:intron 25.0%
! TGATTCTTATAGCTATGTAT+TGG - Chr6:46629838-46629857 MsG0680032642.01.T01:intron 25.0%
! TGGTATAGTAAATTTGGTTA+TGG + Chr6:46628571-46628590 None:intergenic 25.0%
! TGGTTGTTGAATCAAAAAAA+TGG - Chr6:46629230-46629249 MsG0680032642.01.T01:intron 25.0%
! TTAAAAAACTCAAGTGTACA+TGG - Chr6:46633591-46633610 MsG0680032642.01.T01:CDS 25.0%
! TTACTTTCTTGGAAAAGTAA+AGG - Chr6:46629519-46629538 MsG0680032642.01.T01:intron 25.0%
! TTATGTTAGTGTTGTGAAAT+AGG - Chr6:46630947-46630966 MsG0680032642.01.T01:intron 25.0%
! TTATTTCGAATCTTTCTAAC+AGG + Chr6:46634250-46634269 None:intergenic 25.0%
! TTCGAATATGATTTATATCG+GGG + Chr6:46633533-46633552 None:intergenic 25.0%
!! AAATTCCATGGTAATGTTAA+TGG - Chr6:46629178-46629197 MsG0680032642.01.T01:intron 25.0%
!! ATTGAACCTAAAACAACTTT+TGG + Chr6:46629270-46629289 None:intergenic 25.0%
!! GAGAATCTAACTCAAAATTT+TGG + Chr6:46633057-46633076 None:intergenic 25.0%
!! GGAGTTTTTGATCTTTTATT+TGG - Chr6:46629210-46629229 MsG0680032642.01.T01:intron 25.0%
!! TTTTCTGCATATCATAAATG+TGG - Chr6:46633821-46633840 MsG0680032642.01.T01:CDS 25.0%
!!! AAATTTTCAAGGAAATGAAG+AGG + Chr6:46631308-46631327 None:intergenic 25.0%
!!! AAGGCATTGTAAATATATAC+AGG - Chr6:46634470-46634489 MsG0680032642.01.T01:intron 25.0%
!!! ATTTTTCTAGTACTATTGCT+TGG - Chr6:46631397-46631416 MsG0680032642.01.T01:intron 25.0%
!!! ATTTTTCTTTTCAAGGTTTG+TGG - Chr6:46628463-46628482 MsG0680032642.01.T01:CDS 25.0%
!!! TACCATGGAATTTTTTACTT+TGG + Chr6:46629171-46629190 None:intergenic 25.0%
!!! TATTTCTGGTTTTTGTGAAA+TGG - Chr6:46628704-46628723 MsG0680032642.01.T01:intron 25.0%
!!! TCACTTTTGATATTCTTTTG+TGG - Chr6:46630529-46630548 MsG0680032642.01.T01:intron 25.0%
!!! TGTAGCTTTAACTAAAATCA+CGG - Chr6:46629038-46629057 MsG0680032642.01.T01:intron 25.0%
!!! TTAATTTGAAGAGGGAATTT+TGG - Chr6:46634757-46634776 MsG0680032642.01.T01:intron 25.0%
AAAAAAAAAATTGAGGCCCA+TGG - Chr6:46632412-46632431 MsG0680032642.01.T01:intron 30.0%
AATGATCAAAATCAAGGACA+TGG - Chr6:46631849-46631868 MsG0680032642.01.T01:intron 30.0%
AATGTCAAAAAGTCTTCTAC+AGG + Chr6:46633168-46633187 None:intergenic 30.0%
AATTCAACTGCATCAAAAGA+AGG - Chr6:46630122-46630141 MsG0680032642.01.T01:intron 30.0%
ACATAAAATCATATGACGTG+TGG + Chr6:46630811-46630830 None:intergenic 30.0%
AGAAGGGACTAATAATGATT+TGG - Chr6:46630139-46630158 MsG0680032642.01.T01:intron 30.0%
AGAATGTCAATGTGTATGAT+AGG + Chr6:46631579-46631598 None:intergenic 30.0%
AGTTTCTAAATTGTAAGGGT+AGG + Chr6:46630779-46630798 None:intergenic 30.0%
ATCTGTTCATAAAGATATCG+AGG - Chr6:46629869-46629888 MsG0680032642.01.T01:intron 30.0%
ATTCAACTGCATCAAAAGAA+GGG - Chr6:46630123-46630142 MsG0680032642.01.T01:intron 30.0%
CACCAAAGTAAAAAATTCCA+TGG - Chr6:46629166-46629185 MsG0680032642.01.T01:intron 30.0%
CATTTGATGCCAAATTTGAT+AGG + Chr6:46630681-46630700 None:intergenic 30.0%
CTATTCTTGTGATCATTGTT+TGG - Chr6:46632821-46632840 MsG0680032642.01.T01:intron 30.0%
CTTAATTCTCAAGAGTTGAA+TGG - Chr6:46629975-46629994 MsG0680032642.01.T01:intron 30.0%
CTTCTAAATCATGGTTCAAT+TGG + Chr6:46631117-46631136 None:intergenic 30.0%
GAAATTGATAGGTTTCATGT+TGG - Chr6:46630077-46630096 MsG0680032642.01.T01:intron 30.0%
GAAGTAGATAGAACAATAGA+AGG - Chr6:46630206-46630225 MsG0680032642.01.T01:intron 30.0%
GATTTGCATCCTTTAATTGA+TGG - Chr6:46634508-46634527 MsG0680032642.01.T01:intron 30.0%
GCAGATATGTTCAAATACAT+AGG - Chr6:46629492-46629511 MsG0680032642.01.T01:intron 30.0%
GCAGTAACTATAATAGTTGA+AGG + Chr6:46631625-46631644 None:intergenic 30.0%
GGAAATGAAGAGGAAATATT+TGG + Chr6:46631298-46631317 None:intergenic 30.0%
GTTCAACTATGTTTCAACTA+TGG - Chr6:46631086-46631105 MsG0680032642.01.T01:intron 30.0%
TAATTGAATGCATCAACTTG+TGG - Chr6:46630830-46630849 MsG0680032642.01.T01:intron 30.0%
TATAGTACCTTCTCTAAACT+TGG + Chr6:46630419-46630438 None:intergenic 30.0%
TATCATACACATTGACATTC+TGG - Chr6:46631578-46631597 MsG0680032642.01.T01:intron 30.0%
TATGTTGATGTTATGCACAA+AGG - Chr6:46634607-46634626 MsG0680032642.01.T01:intron 30.0%
TGATGTTAGAGATGCTATAT+CGG + Chr6:46633392-46633411 None:intergenic 30.0%
TTAGTCCATTAACATTACCA+TGG + Chr6:46629186-46629205 None:intergenic 30.0%
TTATGGTAATTTCTACCACT+GGG + Chr6:46633903-46633922 None:intergenic 30.0%
TTCACAACACTAACATAACA+TGG + Chr6:46630945-46630964 None:intergenic 30.0%
TTCTCTTAACTTCTTCTACT+AGG + Chr6:46632636-46632655 None:intergenic 30.0%
TTCTTGATTTCAAAGATGCT+AGG - Chr6:46630393-46630412 MsG0680032642.01.T01:intron 30.0%
TTCTTGGTTTAAATATGTCG+TGG - Chr6:46630339-46630358 MsG0680032642.01.T01:intron 30.0%
TTGTGCATAACATCAACATA+GGG + Chr6:46634607-46634626 None:intergenic 30.0%
TTTCGTAGATTATGAACTTG+AGG + Chr6:46630035-46630054 None:intergenic 30.0%
TTTGCAACAATTGACAAAAG+AGG - Chr6:46634146-46634165 MsG0680032642.01.T01:intron 30.0%
TTTGTGCATAACATCAACAT+AGG + Chr6:46634608-46634627 None:intergenic 30.0%
! AAAAATTGGGCCCAAATTTT+TGG + Chr6:46633793-46633812 None:intergenic 30.0%
! ACAGCTATAACAAGATTTTG+AGG + Chr6:46629741-46629760 None:intergenic 30.0%
! ACATAGGAAAGTTACTTTCT+TGG - Chr6:46629508-46629527 MsG0680032642.01.T01:intron 30.0%
! AGATCACATTGCAATTTTCA+TGG - Chr6:46633715-46633734 MsG0680032642.01.T01:CDS 30.0%
! ATTGTTTGGGATTAGGAATA+AGG - Chr6:46632835-46632854 MsG0680032642.01.T01:CDS 30.0%
! CAGCTATAACAAGATTTTGA+GGG + Chr6:46629740-46629759 None:intergenic 30.0%
! CTTCTATTTTCAAACTCAAG+TGG - Chr6:46634445-46634464 MsG0680032642.01.T01:intron 30.0%
! CTTTTAGGCCTATTAGAATT+AGG + Chr6:46632356-46632375 None:intergenic 30.0%
! TATTTCGGGACACAAAATTT+TGG - Chr6:46634181-46634200 MsG0680032642.01.T01:intron 30.0%
! TCATTGCTTTGTTAGAATCA+CGG + Chr6:46629071-46629090 None:intergenic 30.0%
!! AATTTGTTGTGCTTATTAGG+CGG + Chr6:46633492-46633511 None:intergenic 30.0%
!! AGGAATTTGTTGTGCTTATT+AGG + Chr6:46633495-46633514 None:intergenic 30.0%
!! ATTTGTTGTTGAACTCCAAA+AGG - Chr6:46631675-46631694 MsG0680032642.01.T01:intron 30.0%
!! CCAATTCCAAAAGTTGTTTT+AGG - Chr6:46629261-46629280 MsG0680032642.01.T01:intron 30.0%
!! CTGTTGCTCATTTTTGTTAT+AGG + Chr6:46632714-46632733 None:intergenic 30.0%
!! GACTAGCATTTTCAAGATTA+TGG + Chr6:46632947-46632966 None:intergenic 30.0%
!! TAACCAAATGCTTTTTGTTC+AGG + Chr6:46631880-46631899 None:intergenic 30.0%
!! TAATGTTAATGGACTAAAGG+TGG - Chr6:46629189-46629208 MsG0680032642.01.T01:intron 30.0%
!! TGGTAATGTTAATGGACTAA+AGG - Chr6:46629186-46629205 MsG0680032642.01.T01:intron 30.0%
!! TTCTGGAGTCATTTGAAATT+TGG - Chr6:46631595-46631614 MsG0680032642.01.T01:intron 30.0%
!! TTTCCTGAACAAAAAGCATT+TGG - Chr6:46631874-46631893 MsG0680032642.01.T01:intron 30.0%
!! TTTGTTGTTGAACTCCAAAA+GGG - Chr6:46631676-46631695 MsG0680032642.01.T01:intron 30.0%
!!! CATGGAATTTTTTACTTTGG+TGG + Chr6:46629168-46629187 None:intergenic 30.0%
!!! CCTAAAACAACTTTTGGAAT+TGG + Chr6:46629264-46629283 None:intergenic 30.0%
!!! TCCTCTTGTTTTAGTCTTTT+AGG + Chr6:46632371-46632390 None:intergenic 30.0%
AAAAACTCAAGTGTACATGG+AGG - Chr6:46633594-46633613 MsG0680032642.01.T01:CDS 35.0%
AAAACTCAAGTGTACATGGA+GGG - Chr6:46633595-46633614 MsG0680032642.01.T01:CDS 35.0%
AAATGACTACCGTATACATG+AGG - Chr6:46632300-46632319 MsG0680032642.01.T01:intron 35.0%
AACAGAACCGTAGTTAACAA+TGG - Chr6:46631021-46631040 MsG0680032642.01.T01:intron 35.0%
AACATTGAGTAGAAGTCATC+AGG - Chr6:46632122-46632141 MsG0680032642.01.T01:intron 35.0%
AAGCAAGTGCAAGCAAAAAA+GGG + Chr6:46629677-46629696 None:intergenic 35.0%
AAGCAGCATCCTACAAATAA+AGG + Chr6:46634353-46634372 None:intergenic 35.0%
AAGTGCTTTATGGGAGTTAA+TGG - Chr6:46630594-46630613 MsG0680032642.01.T01:intron 35.0%
AATGATTATCAGGTTCTCTG+TGG - Chr6:46630717-46630736 MsG0680032642.01.T01:intron 35.0%
ACATTGAGTAGAAGTCATCA+GGG - Chr6:46632123-46632142 MsG0680032642.01.T01:intron 35.0%
AGAAAGTTGAAGAGATTGCA+AGG - Chr6:46633738-46633757 MsG0680032642.01.T01:CDS 35.0%
ATAATCATTCACTTACCGGT+TGG + Chr6:46630706-46630725 None:intergenic 35.0%
ATGAGGATTTCTTAACCTCT+AGG + Chr6:46633952-46633971 None:intergenic 35.0%
ATTGTAGAATTGTTCACACG+TGG + Chr6:46632604-46632623 None:intergenic 35.0%
CAAAGCAATGAAGTCTCAAA+AGG - Chr6:46629080-46629099 MsG0680032642.01.T01:intron 35.0%
CAAGAGGACCTAATTCTAAT+AGG - Chr6:46632345-46632364 MsG0680032642.01.T01:intron 35.0%
CCTGAACAAGGAAAAGAAAT+TGG + Chr6:46629135-46629154 None:intergenic 35.0%
CCTGATAATCATTCACTTAC+CGG + Chr6:46630710-46630729 None:intergenic 35.0%
CGCTATCACTTGAAATCATT+CGG + Chr6:46630058-46630077 None:intergenic 35.0%
CTTATGGTAATTTCTACCAC+TGG + Chr6:46633904-46633923 None:intergenic 35.0%
GAAAGTTGAAGAGATTGCAA+GGG - Chr6:46633739-46633758 MsG0680032642.01.T01:CDS 35.0%
GAACCAACCATTGTTAACTA+CGG + Chr6:46631031-46631050 None:intergenic 35.0%
GAATAATGAGACATTGTAGC+TGG + Chr6:46629948-46629967 None:intergenic 35.0%
GATACATCAGATCGAAAAGA+TGG + Chr6:46631356-46631375 None:intergenic 35.0%
GATCGTTGTAAAAAATCCGT+AGG - Chr6:46633872-46633891 MsG0680032642.01.T01:CDS 35.0%
GCCTAAAAGACTAAAACAAG+AGG - Chr6:46632367-46632386 MsG0680032642.01.T01:intron 35.0%
GGAATGTTTATCACAGTAGA+TGG - Chr6:46630550-46630569 MsG0680032642.01.T01:intron 35.0%
GGACTACTATAATCTCAATG+TGG - Chr6:46633208-46633227 MsG0680032642.01.T01:CDS 35.0%
GTCAATGTGTATGATAGGTT+TGG + Chr6:46631574-46631593 None:intergenic 35.0%
GTCATATGAATTTGACAGCT+TGG + Chr6:46632755-46632774 None:intergenic 35.0%
GTCGAGAGCAAAATTTCATT+CGG - Chr6:46629759-46629778 MsG0680032642.01.T01:intron 35.0%
GTTCTACCAATTGGTAGAAA+TGG + Chr6:46629336-46629355 None:intergenic 35.0%
TACAAACTTGTGGTATAGGA+AGG - Chr6:46628392-46628411 MsG0680032642.01.T01:CDS 35.0%
TGGAATTCCAAGTGCTTTAT+GGG - Chr6:46630585-46630604 MsG0680032642.01.T01:intron 35.0%
TGGAGAATTCCTTAAATGCT+AGG - Chr6:46634061-46634080 MsG0680032642.01.T01:five_prime_UTR 35.0%
TGTCTCATATAACATTGTGC+AGG + Chr6:46634661-46634680 None:intergenic 35.0%
TGTGCATAACATCAACATAG+GGG + Chr6:46634606-46634625 None:intergenic 35.0%
TGTTCTATCTACTTCGACAA+CGG + Chr6:46630201-46630220 None:intergenic 35.0%
TTACATAGTCACCTTGCTTA+AGG - Chr6:46633460-46633479 MsG0680032642.01.T01:CDS 35.0%
TTCCCAAGAAGATGAGAAAA+GGG - Chr6:46631450-46631469 MsG0680032642.01.T01:intron 35.0%
TTGTTAACTACGGTTCTGTT+TGG + Chr6:46631021-46631040 None:intergenic 35.0%
TTGTTGCAAACATGTAGACA+TGG + Chr6:46634136-46634155 None:intergenic 35.0%
TTTCCCAAGAAGATGAGAAA+AGG - Chr6:46631449-46631468 MsG0680032642.01.T01:intron 35.0%
TTTGATGTGTCCTATGCAAA+TGG - Chr6:46633629-46633648 MsG0680032642.01.T01:CDS 35.0%
TTTGGTACAACCATTTGCAT+AGG + Chr6:46633642-46633661 None:intergenic 35.0%
TTTGTGAAATGCTAGGAACA+AGG + Chr6:46633032-46633051 None:intergenic 35.0%
! AGTAACTCTTTTACCAAGCA+TGG - Chr6:46634280-46634299 MsG0680032642.01.T01:intron 35.0%
! ATAAAGGTGCACCTTATGTT+TGG + Chr6:46634337-46634356 None:intergenic 35.0%
! ATGTTGATTGCAATGCTTCT+TGG - Chr6:46630323-46630342 MsG0680032642.01.T01:intron 35.0%
! ATTAACTCCCATAAAGCACT+TGG + Chr6:46630595-46630614 None:intergenic 35.0%
! CAAGTGATAGCGAAATTGAT+AGG - Chr6:46630066-46630085 MsG0680032642.01.T01:intron 35.0%
! CAATAGCCTTTGCAATTTTC+TGG - Chr6:46629286-46629305 MsG0680032642.01.T01:intron 35.0%
! CCAATTTCTTTTCCTTGTTC+AGG - Chr6:46629132-46629151 MsG0680032642.01.T01:intron 35.0%
! GAACTTTCTGAAGAAACAAG+TGG - Chr6:46628756-46628775 MsG0680032642.01.T01:intron 35.0%
! GTAACTCTTTTACCAAGCAT+GGG - Chr6:46634281-46634300 MsG0680032642.01.T01:intron 35.0%
! GTAGATGGATTCAACAAAAC+TGG - Chr6:46630565-46630584 MsG0680032642.01.T01:intron 35.0%
! TAAAGGTGCACCTTATGTTT+GGG + Chr6:46634336-46634355 None:intergenic 35.0%
! TAAGGTGCACCTTTATTTGT+AGG - Chr6:46634341-46634360 MsG0680032642.01.T01:intron 35.0%
! TCATTCGGAGAGTTTTTGTT+TGG - Chr6:46629774-46629793 MsG0680032642.01.T01:intron 35.0%
! TGATTTGGCATCTCAAACAA+AGG - Chr6:46630154-46630173 MsG0680032642.01.T01:intron 35.0%
! TGTGATCATTGTTTGGGATT+AGG - Chr6:46632828-46632847 MsG0680032642.01.T01:CDS 35.0%
! TTGGAAAAGTAAAGGTGCAA+AGG - Chr6:46629527-46629546 MsG0680032642.01.T01:intron 35.0%
! TTTCTACAACAGAACCCTTT+TGG + Chr6:46631693-46631712 None:intergenic 35.0%
! TTTGGGATTTGTGAAATGCT+AGG + Chr6:46633039-46633058 None:intergenic 35.0%
! TTTGGTTGAGTTGTCTAACT+TGG + Chr6:46628438-46628457 None:intergenic 35.0%
! TTTTCAAACTCAAGTGGCAA+AGG - Chr6:46634451-46634470 MsG0680032642.01.T01:intron 35.0%
!! AGATTTTGAGGGTTACCAAT+TGG + Chr6:46629729-46629748 None:intergenic 35.0%
!! TACAAGGTGTCGTATATATG+CGG - Chr6:46632262-46632281 MsG0680032642.01.T01:intron 35.0%
!! TTAACAATGGTTGGTTCGTT+CGG - Chr6:46631034-46631053 MsG0680032642.01.T01:intron 35.0%
!!! AATTTTGGCTGGACTAGATA+AGG - Chr6:46634772-46634791 MsG0680032642.01.T01:intron 35.0%
!!! AGGACATGTTTTGATCAGTT+CGG - Chr6:46630226-46630245 MsG0680032642.01.T01:intron 35.0%
!!! GGTACTAGTTTTTCAAGACA+TGG + Chr6:46632693-46632712 None:intergenic 35.0%
AAACTCAAGTGTACATGGAG+GGG - Chr6:46633596-46633615 MsG0680032642.01.T01:CDS 40.0%
AACATGTAGACATGGTGTAG+TGG + Chr6:46634128-46634147 None:intergenic 40.0%
AAGAAGATGAGAAAAGGGCT+TGG - Chr6:46631455-46631474 MsG0680032642.01.T01:intron 40.0%
AAGAGGACAGAAAATGACTG+GGG - Chr6:46632384-46632403 MsG0680032642.01.T01:intron 40.0%
ACAAGAGGACAGAAAATGAC+TGG - Chr6:46632382-46632401 MsG0680032642.01.T01:intron 40.0%
AGATATCGAGGATCCTATTG+CGG - Chr6:46629881-46629900 MsG0680032642.01.T01:intron 40.0%
ATCCAGGCCACCAAAAATTT+GGG - Chr6:46633780-46633799 MsG0680032642.01.T01:CDS 40.0%
ATTGGTAGAAATGGAACTGC+TGG + Chr6:46629327-46629346 None:intergenic 40.0%
ATTGTTCCAGCTATGCTTGT+AGG - Chr6:46629798-46629817 MsG0680032642.01.T01:intron 40.0%
CAAGAGGACAGAAAATGACT+GGG - Chr6:46632383-46632402 MsG0680032642.01.T01:intron 40.0%
CAGGACCTCAAGATTACTTA+TGG + Chr6:46633920-46633939 None:intergenic 40.0%
CATTGAACCAGAAGTCGAAA+TGG + Chr6:46631162-46631181 None:intergenic 40.0%
CCAAAAAGAAGACCGAGAAT+TGG + Chr6:46629441-46629460 None:intergenic 40.0%
CCATGATTTAGAAGTCTCAC+CGG - Chr6:46631123-46631142 MsG0680032642.01.T01:intron 40.0%
CCATGCTTATGTACTTGTTC+AGG + Chr6:46631978-46631997 None:intergenic 40.0%
CCGGTAAGTGAATGATTATC+AGG - Chr6:46630707-46630726 MsG0680032642.01.T01:intron 40.0%
CCTGAACAAGTACATAAGCA+TGG - Chr6:46631975-46631994 MsG0680032642.01.T01:intron 40.0%
CTAACAGGGTCGTTTATTGA+AGG + Chr6:46634235-46634254 None:intergenic 40.0%
CTGGAATTCCAAGTGCTTTA+TGG - Chr6:46630584-46630603 MsG0680032642.01.T01:intron 40.0%
CTTGCTTCAAGTGCTAACAT+TGG - Chr6:46629690-46629709 MsG0680032642.01.T01:intron 40.0%
GAACCGTAGTTAACAATGGT+TGG - Chr6:46631025-46631044 MsG0680032642.01.T01:intron 40.0%
GAACGATCAACTCGTGAATA+AGG + Chr6:46630622-46630641 None:intergenic 40.0%
GAAGCAAGTGCAAGCAAAAA+AGG + Chr6:46629678-46629697 None:intergenic 40.0%
GAATCAAGTATAGGGAGCTA+AGG + Chr6:46634399-46634418 None:intergenic 40.0%
GCAAATAGCTCAACAGAGTT+GGG + Chr6:46632448-46632467 None:intergenic 40.0%
GCAATCGATCTTCCAATTCT+CGG - Chr6:46629426-46629445 MsG0680032642.01.T01:intron 40.0%
GCAGTTCCATTTCTACCAAT+TGG - Chr6:46629327-46629346 MsG0680032642.01.T01:intron 40.0%
GGAATGAAATCTCCTGAACA+AGG + Chr6:46629147-46629166 None:intergenic 40.0%
GGTTCAACTCCTAGCATTTA+AGG + Chr6:46634073-46634092 None:intergenic 40.0%
TACTCTTCTCCCTTTCCATT+TGG - Chr6:46634814-46634833 MsG0680032642.01.T01:five_prime_UTR 40.0%
TATATATGCGGTACACCCAA+AGG - Chr6:46632274-46632293 MsG0680032642.01.T01:intron 40.0%
TGAATGCATCAACTTGTGGT+AGG - Chr6:46630834-46630853 MsG0680032642.01.T01:intron 40.0%
TGCAAATAGCTCAACAGAGT+TGG + Chr6:46632449-46632468 None:intergenic 40.0%
TGTTAGAGATGCTATATCGG+TGG + Chr6:46633389-46633408 None:intergenic 40.0%
TTAGTCCAGCCAAATGGAAA+GGG + Chr6:46634826-46634845 None:intergenic 40.0%
TTCCATTTGGCTGGACTAAA+GGG - Chr6:46634827-46634846 MsG0680032642.01.T01:five_prime_UTR 40.0%
TTGGCATCAAATGTACCAAC+CGG - Chr6:46630688-46630707 MsG0680032642.01.T01:intron 40.0%
TTGTCTACTACATGACTTCC+AGG + Chr6:46632486-46632505 None:intergenic 40.0%
TTTAGTCCAGCCAAATGGAA+AGG + Chr6:46634827-46634846 None:intergenic 40.0%
TTTCCATTTGGCTGGACTAA+AGG - Chr6:46634826-46634845 MsG0680032642.01.T01:five_prime_UTR 40.0%
TTTGATCAGTTCGGAAGGAA+AGG - Chr6:46630235-46630254 MsG0680032642.01.T01:intron 40.0%
TTTGGCATCTCAAACAAAGG+AGG - Chr6:46630157-46630176 MsG0680032642.01.T01:intron 40.0%
! AAGCCCTTTTCTCATCTTCT+TGG + Chr6:46631456-46631475 None:intergenic 40.0%
! AATTTCGGCTGCATTAGCTT+TGG - Chr6:46630367-46630386 MsG0680032642.01.T01:intron 40.0%
! ACTTCGACAACGGTTTTTGA+CGG + Chr6:46630191-46630210 None:intergenic 40.0%
! AGCCCTTTTCTCATCTTCTT+GGG + Chr6:46631455-46631474 None:intergenic 40.0%
! CATAAGCATTGCACCTAAGA+GGG + Chr6:46629367-46629386 None:intergenic 40.0%
! CCAATTCTCGGTCTTCTTTT+TGG - Chr6:46629438-46629457 MsG0680032642.01.T01:intron 40.0%
! GAAGGACGCAAATAGCTTTA+CGG + Chr6:46634217-46634236 None:intergenic 40.0%
! GAATTAGGTCCTCTTGCTTT+TGG + Chr6:46632341-46632360 None:intergenic 40.0%
! TATGTCGTGGACTGCAATTT+CGG - Chr6:46630352-46630371 MsG0680032642.01.T01:intron 40.0%
!! AAATGGACTAGAGGTCAAAC+CGG + Chr6:46631145-46631164 None:intergenic 40.0%
!! AAGTGCTAACATTGGTTCCT+CGG - Chr6:46629698-46629717 MsG0680032642.01.T01:intron 40.0%
!! AATTGGGCCCAAATTTTTGG+TGG + Chr6:46633790-46633809 None:intergenic 40.0%
!! ACATGGATTCTGCTCTGAAA+TGG + Chr6:46632676-46632695 None:intergenic 40.0%
!! ACGGTAGTCATTTTCACCTT+TGG + Chr6:46632293-46632312 None:intergenic 40.0%
!! ACGGTTCTGTTTGGTTCTAA+AGG + Chr6:46631012-46631031 None:intergenic 40.0%
!! CAGTGACATCGTGTTTTTGT+TGG - Chr6:46629005-46629024 MsG0680032642.01.T01:intron 40.0%
!! CGGTAGTCATTTTCACCTTT+GGG + Chr6:46632292-46632311 None:intergenic 40.0%
!! CTTCTGGTTCAATGTTGGTT+TGG - Chr6:46631168-46631187 MsG0680032642.01.T01:intron 40.0%
!! TTCGACTTCTGGTTCAATGT+TGG - Chr6:46631163-46631182 MsG0680032642.01.T01:intron 40.0%
!! TTTGAAGAGGGAATTTTGGC+TGG - Chr6:46634761-46634780 MsG0680032642.01.T01:intron 40.0%
!!! CATGTTTTGATCAGTTCGGA+AGG - Chr6:46630230-46630249 MsG0680032642.01.T01:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + Chr6:46632330-46632349 None:intergenic 40.0%
AAAAAATTGAGGCCCATGGC+TGG - Chr6:46632416-46632435 MsG0680032642.01.T01:intron 45.0%
AAAAATTGAGGCCCATGGCT+GGG - Chr6:46632417-46632436 MsG0680032642.01.T01:intron 45.0%
AACCTCCGAATTCTTAGGGA+CGG + Chr6:46632149-46632168 None:intergenic 45.0%
ACAACTCCTACAAGCATAGC+TGG + Chr6:46629807-46629826 None:intergenic 45.0%
AGAGGACAGAAAATGACTGG+GGG - Chr6:46632385-46632404 MsG0680032642.01.T01:intron 45.0%
AGGTGACTATGTAACACCTC+AGG + Chr6:46633454-46633473 None:intergenic 45.0%
AGTGCAAGCAAAAAAGGGTG+AGG + Chr6:46629672-46629691 None:intergenic 45.0%
AGTGCACGCTAAGATCATCA+AGG - Chr6:46634536-46634555 MsG0680032642.01.T01:intron 45.0%
ATTGCTTGGAGCAAGAGTTG+CGG - Chr6:46631411-46631430 MsG0680032642.01.T01:intron 45.0%
CACCTAACACCAAAAGCAAG+AGG - Chr6:46632329-46632348 MsG0680032642.01.T01:intron 45.0%
CCAACAAACAGCACACATGA+GGG + Chr6:46633968-46633987 None:intergenic 45.0%
CCGGTGAGACTTCTAAATCA+TGG + Chr6:46631126-46631145 None:intergenic 45.0%
CCTCTTAGGTGCAATGCTTA+TGG - Chr6:46629365-46629384 MsG0680032642.01.T01:intron 45.0%
CGGGGACCTAATAAATCATG+AGG + Chr6:46633515-46633534 None:intergenic 45.0%
CTACCAATTGGTAGAACAGC+AGG - Chr6:46629339-46629358 MsG0680032642.01.T01:intron 45.0%
CTCTAGTCCATTTCGACTTC+TGG - Chr6:46631152-46631171 MsG0680032642.01.T01:intron 45.0%
GAAAAGGGCTTGGCTCATAT+TGG - Chr6:46631465-46631484 MsG0680032642.01.T01:intron 45.0%
GATCCAGGCCACCAAAAATT+TGG - Chr6:46633779-46633798 MsG0680032642.01.T01:CDS 45.0%
GATCCTGCTGTTCTACCAAT+TGG + Chr6:46629345-46629364 None:intergenic 45.0%
GATGACTTTACTTGCACGCA+GGG - Chr6:46634306-46634325 MsG0680032642.01.T01:intron 45.0%
GGCGGATAAATCCTTAAGCA+AGG + Chr6:46633474-46633493 None:intergenic 45.0%
TAAAGTCATCCTCCCATGCT+TGG + Chr6:46634296-46634315 None:intergenic 45.0%
TCCAACAAACAGCACACATG+AGG + Chr6:46633969-46633988 None:intergenic 45.0%
TCCCTAAGAATTCGGAGGTT+CGG - Chr6:46632149-46632168 MsG0680032642.01.T01:intron 45.0%
TGCTAGGCCAAGTTTAGAGA+AGG - Chr6:46630409-46630428 MsG0680032642.01.T01:intron 45.0%
TGTTGTGAAATAGGCCAGTC+TGG - Chr6:46630956-46630975 MsG0680032642.01.T01:intron 45.0%
TTGTAAGGGTAGGAGAGACA+AGG + Chr6:46630769-46630788 None:intergenic 45.0%
! AACCTCTAGGAGTTGAGTTC+AGG + Chr6:46633939-46633958 None:intergenic 45.0%
! ACTCTTTTACCAAGCATGGG+AGG - Chr6:46634284-46634303 MsG0680032642.01.T01:intron 45.0%
! ACTTGACGCAAGTAGCTTTG+TGG + Chr6:46634101-46634120 None:intergenic 45.0%
! CCATAAGCATTGCACCTAAG+AGG + Chr6:46629368-46629387 None:intergenic 45.0%
! CTAAAGGGCATGGCTCATAT+TGG - Chr6:46634842-46634861 MsG0680032642.01.T01:five_prime_UTR 45.0%
! GCAAATAGCTTTACGGAGCT+GGG + Chr6:46634210-46634229 None:intergenic 45.0%
! GCTGTTTGTTGGATCTCTTG+AGG - Chr6:46633976-46633995 MsG0680032642.01.T01:CDS 45.0%
!! CAGAAGTCGAAATGGACTAG+AGG + Chr6:46631154-46631173 None:intergenic 45.0%
!! CGGTCTTCTTTTTGGCACAA+TGG - Chr6:46629446-46629465 MsG0680032642.01.T01:intron 45.0%
!! GCAAGTAGCTTTGTGGTCAT+GGG + Chr6:46634094-46634113 None:intergenic 45.0%
!! TCACGAGTTGATCGTTCTAG+CGG - Chr6:46630625-46630644 MsG0680032642.01.T01:intron 45.0%
!! TCCTCATGTGTGCTGTTTGT+TGG - Chr6:46633965-46633984 MsG0680032642.01.T01:CDS 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + Chr6:46632331-46632350 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + Chr6:46632329-46632348 None:intergenic 45.0%
!!! GTCCTCTTGCTTTTGGTGTT+AGG + Chr6:46632334-46632353 None:intergenic 45.0%
!!! TTGCTTTTGGTGTTAGGTGG+GGG + Chr6:46632328-46632347 None:intergenic 45.0%
!! AGAAAAATAAAATAAAAAAT+TGG + Chr6:46633807-46633826 None:intergenic 5.0%
!! GAAAAATAAAATAAAAAATT+GGG + Chr6:46633806-46633825 None:intergenic 5.0%
!! TAAAACTAATTATATAAAAT+TGG - Chr6:46632509-46632528 MsG0680032642.01.T01:intron 5.0%
!!! ATTTTTTTTTTTTTACTATT+TGG - Chr6:46632553-46632572 MsG0680032642.01.T01:CDS 5.0%
!!! TTTAATATTTATTTGTTATT+TGG - Chr6:46631064-46631083 MsG0680032642.01.T01:intron 5.0%
AAAATTGAGGCCCATGGCTG+GGG - Chr6:46632418-46632437 MsG0680032642.01.T01:intron 50.0%
AAAGGACTGTGAACCGACCT+TGG + Chr6:46630994-46631013 None:intergenic 50.0%
AGAACAGCAGGATCCCTCTT+AGG - Chr6:46629351-46629370 MsG0680032642.01.T01:intron 50.0%
AGCAGGGAACCTGTCACTAT+TGG - Chr6:46634881-46634900 MsG0680032642.01.T01:five_prime_UTR 50.0%
AGCCGAACCTCCGAATTCTT+AGG + Chr6:46632154-46632173 None:intergenic 50.0%
ATTGCAGCGTACGCTTCTTC+CGG + Chr6:46629411-46629430 None:intergenic 50.0%
CAGGGAACCTGTCACTATTG+GGG - Chr6:46634883-46634902 MsG0680032642.01.T01:five_prime_UTR 50.0%
CTTCTCCCTTTCCATTTGGC+TGG - Chr6:46634818-46634837 MsG0680032642.01.T01:five_prime_UTR 50.0%
CTTGGGTCAGCACTATAGCA+GGG - Chr6:46631488-46631507 MsG0680032642.01.T01:intron 50.0%
GCAAGCAAAAAAGGGTGAGG+TGG + Chr6:46629669-46629688 None:intergenic 50.0%
GCAGGGAACCTGTCACTATT+GGG - Chr6:46634882-46634901 MsG0680032642.01.T01:five_prime_UTR 50.0%
GCCGAACCTCCGAATTCTTA+GGG + Chr6:46632153-46632172 None:intergenic 50.0%
GGATGACTTTACTTGCACGC+AGG - Chr6:46634305-46634324 MsG0680032642.01.T01:intron 50.0%
GGTGCACCTTATGTTTGGGT+CGG + Chr6:46634332-46634351 None:intergenic 50.0%
GTCCTGAACTCAACTCCTAG+AGG - Chr6:46633934-46633953 MsG0680032642.01.T01:CDS 50.0%
TACTACATGACTTCCAGGCC+CGG + Chr6:46632481-46632500 None:intergenic 50.0%
TCAGCTGCAACTTCCGCAAT+AGG + Chr6:46629897-46629916 None:intergenic 50.0%
TGCCCTTTAGTCCAGCCAAA+TGG + Chr6:46634832-46634851 None:intergenic 50.0%
TGTAGACATGGTGTAGTGGC+AGG + Chr6:46634124-46634143 None:intergenic 50.0%
TGTGAAATAGGCCAGTCTGG+CGG - Chr6:46630959-46630978 MsG0680032642.01.T01:intron 50.0%
TTGAGCTATTTGCACCCGCA+GGG - Chr6:46632455-46632474 MsG0680032642.01.T01:intron 50.0%
TTTGGCTGGACTAAAGGGCA+TGG - Chr6:46634832-46634851 MsG0680032642.01.T01:five_prime_UTR 50.0%
! CGCAAATAGCTTTACGGAGC+TGG + Chr6:46634211-46634230 None:intergenic 50.0%
! GCAAATAGCTGCACTGATCC+AGG - Chr6:46633764-46633783 MsG0680032642.01.T01:CDS 50.0%
!! AGGACTGTTTAAGCGCTGAG+TGG - Chr6:46630255-46630274 MsG0680032642.01.T01:intron 50.0%
!! CCCTCATGTGTGCTGTTTGT+TGG - Chr6:46634041-46634060 MsG0680032642.01.T01:five_prime_UTR 50.0%
!! CGCAAGTAGCTTTGTGGTCA+TGG + Chr6:46634095-46634114 None:intergenic 50.0%
!! GGCATGGCTCATATTGGCTT+GGG - Chr6:46634848-46634867 MsG0680032642.01.T01:five_prime_UTR 50.0%
!! GGCTTGGCTCATATTGGCTT+GGG - Chr6:46631471-46631490 MsG0680032642.01.T01:intron 50.0%
!! TCGGCTCTGGGAATGAAAAC+AGG - Chr6:46632168-46632187 MsG0680032642.01.T01:intron 50.0%
AAATTGAGGCCCATGGCTGG+GGG - Chr6:46632419-46632438 MsG0680032642.01.T01:intron 55.0%
AATCCGTAGGCATGACCCAG+TGG - Chr6:46633885-46633904 MsG0680032642.01.T01:CDS 55.0%
AGAATTCGGAGGTTCGGCTC+TGG - Chr6:46632155-46632174 MsG0680032642.01.T01:intron 55.0%
AGCAGGGAACCTGTCACTGT+TGG - Chr6:46631504-46631523 MsG0680032642.01.T01:intron 55.0%
CAGCTGACCCCAATAGTGAC+AGG + Chr6:46634893-46634912 None:intergenic 55.0%
CAGCTGATCCCAACAGTGAC+AGG + Chr6:46631516-46631535 None:intergenic 55.0%
CAGGGCCGTCCCTAAGAATT+CGG - Chr6:46632141-46632160 MsG0680032642.01.T01:intron 55.0%
CTACCACTGGGTCATGCCTA+CGG + Chr6:46633891-46633910 None:intergenic 55.0%
GAATTCGGAGGTTCGGCTCT+GGG - Chr6:46632156-46632175 MsG0680032642.01.T01:intron 55.0%
GCAGGGAACCTGTCACTGTT+GGG - Chr6:46631505-46631524 MsG0680032642.01.T01:intron 55.0%
GCTTGGGTCAGCACTATAGC+AGG - Chr6:46631487-46631506 MsG0680032642.01.T01:intron 55.0%
GTTACCAATTGGCGTAGCCG+AGG + Chr6:46629718-46629737 None:intergenic 55.0%
GTTGAGCTATTTGCACCCGC+AGG - Chr6:46632454-46632473 MsG0680032642.01.T01:intron 55.0%
TTGGGAAATCGCAGCTGCTG+AGG + Chr6:46631437-46631456 None:intergenic 55.0%
! CACACATGAGGGCACACATG+AGG + Chr6:46634033-46634052 None:intergenic 55.0%
! CTGAGTGGAAGCGTAGACTG+TGG - Chr6:46630270-46630289 MsG0680032642.01.T01:intron 55.0%
! GGGCATGGCTCATATTGGCT+TGG - Chr6:46634847-46634866 MsG0680032642.01.T01:five_prime_UTR 55.0%
! GGGCTTGGCTCATATTGGCT+TGG - Chr6:46631470-46631489 MsG0680032642.01.T01:intron 55.0%
!!! GGCCCAAATTTTTGGTGGCC+TGG + Chr6:46633785-46633804 None:intergenic 55.0%
AAATAGGCCAGTCTGGCGGC+TGG - Chr6:46630963-46630982 MsG0680032642.01.T01:intron 60.0%
GCAGGGCCGACCCAAACATA+AGG - Chr6:46634323-46634342 MsG0680032642.01.T01:intron 60.0%
GGCCGTCCCTAAGAATTCGG+AGG - Chr6:46632144-46632163 MsG0680032642.01.T01:intron 60.0%
GGTTCCTCGGCTACGCCAAT+TGG - Chr6:46629711-46629730 MsG0680032642.01.T01:intron 60.0%
! GCGGCTGGTTGAACCAAGGT+CGG - Chr6:46630978-46630997 MsG0680032642.01.T01:intron 60.0%
! TCTGGCGGCTGGTTGAACCA+AGG - Chr6:46630974-46630993 MsG0680032642.01.T01:intron 60.0%
CTATTTGCACCCGCAGGGCC+GGG - Chr6:46632460-46632479 MsG0680032642.01.T01:intron 65.0%
GCTATTTGCACCCGCAGGGC+CGG - Chr6:46632459-46632478 MsG0680032642.01.T01:intron 65.0%
GGTTCAACCAGCCGCCAGAC+TGG + Chr6:46630973-46630992 None:intergenic 65.0%
AGTTGGGCCTCCCCCAGCCA+TGG + Chr6:46632432-46632451 None:intergenic 70.0%
GTTGGGCCTCCCCCAGCCAT+GGG + Chr6:46632431-46632450 None:intergenic 70.0%
TTGAGGCCCATGGCTGGGGG+AGG - Chr6:46632422-46632441 MsG0680032642.01.T01:intron 70.0%
ACTTCCAGGCCCGGCCCTGC+GGG + Chr6:46632472-46632491 None:intergenic 75.0%
GACTTCCAGGCCCGGCCCTG+CGG + Chr6:46632473-46632492 None:intergenic 75.0%
! TGCACCCGCAGGGCCGGGCC+TGG - Chr6:46632465-46632484 MsG0680032642.01.T01:intron 85.0%
Chromosome Type Strat End Strand Name
Chr6 gene 46628325 46634931 46628325 ID=MsG0680032642.01;Name=MsG0680032642.01
Chr6 mRNA 46628325 46634931 46628325 ID=MsG0680032642.01.T01;Parent=MsG0680032642.01;Name=MsG0680032642.01.T01;_AED=0.35;_eAED=0.38;_QI=248|0.66|0.75|1|0.66|0.5|4|0|511
Chr6 exon 46628325 46628488 46628325 ID=MsG0680032642.01.T01:exon:16583;Parent=MsG0680032642.01.T01
Chr6 exon 46632547 46632736 46632547 ID=MsG0680032642.01.T01:exon:16582;Parent=MsG0680032642.01.T01
Chr6 exon 46632826 46634102 46632826 ID=MsG0680032642.01.T01:exon:16581;Parent=MsG0680032642.01.T01
Chr6 exon 46634779 46634931 46634779 ID=MsG0680032642.01.T01:exon:16580;Parent=MsG0680032642.01.T01
Chr6 five_prime_UTR 46634779 46634931 46634779 ID=MsG0680032642.01.T01:five_prime_utr;Parent=MsG0680032642.01.T01
Chr6 five_prime_UTR 46634008 46634102 46634008 ID=MsG0680032642.01.T01:five_prime_utr;Parent=MsG0680032642.01.T01
Chr6 CDS 46632826 46634007 46632826 ID=MsG0680032642.01.T01:cds;Parent=MsG0680032642.01.T01
Chr6 CDS 46632547 46632736 46632547 ID=MsG0680032642.01.T01:cds;Parent=MsG0680032642.01.T01
Chr6 CDS 46628325 46628488 46628325 ID=MsG0680032642.01.T01:cds;Parent=MsG0680032642.01.T01
Gene Sequence

>MsG0680032642.01.T01

ATGGTACTAGCTCCAATTCCAAAAGTTGTTTTAGGTTCAATAGCCTTTGCAATTTTCTGGATATTAGCAGTTTTTCCAGCAGTTCCATTTCTACCAATTGGTAGAACAGCAGGATCCCTCTTAGGTGCAATGCTTATGGTAATATTCAGAGTTATTACTCCGGAAGAAGCGTACGCTGCAATCGATCTTCCAATTCTCGGTCTTCTTTTTGGCACAATGGTTGTTAGTGTTTATCTTGAAAGAGCAGATATGTTCAAATACATAGGAAAGTTACTTTCTTGGAAAAGTAAAGGTGCAAAGGATTTACTTTGTAGAATCTGTTTGATTTCAGCTTTATCAAGTGCTCTTTTTACAAACGACACTTCTTGTGTTGTTTTGACCGAATTCATATTGAAAATTGCAAAACAACATAATTTACCACCTCACCCTTTTTTGCTTGCACTTGCTTCAAGTGCTAACATTGGTTCCTCGGCTACGCCAATTGGTAACCCTCAAAATCTTGTTATAGCTGTCGAGAGCAAAATTTCATTCGGAGAGTTTTTGTTTGGTATTGTTCCAGCTATGCTTGTAGGAGTTGTAGTTAATGCTTTGATTCTTATAGCTATGTATTGGAAATTGTTATCTGTTCATAAAGATATCGAGGATCCTATTGCGGAAGTTGCAGCTGAAGAAGATGTTAATTCTCATCAATTTTCTCCAGCTACAATGTCTCATTATTCATCATCACTTAATTCTCAAGAGTTGAATGGTTACATAGTAGAATCTTCTAGTATTCAAAACTCTCCTCAAGTTCATAATCTACGAAACCGAATGATTTCAAGTGATAGCGAAATTGATAGGTTTCATGTTGGTAGCACAATAGATTCTGCTAGAAATTCAACTGCATCAAAAGAAGGGACTAATAATGATTTGGCATCTCAAACAAAGGAGGAAACTAGTCCGTCAAAAACCGTTGTCGAAGTAGATAGAACAATAGAAGGACATGTTTTGATCAGTTCGGAAGGAAAGGACTGTTTAAGCGCTGAGTGGAAGCGTAGACTGTGGAAATCTTGTGTTTATATGATTACATTAGGAATGTTGATTGCAATGCTTCTTGGTTTAAATATGTCGTGGACTGCAATTTCGGCTGCATTAGCTTTGGTTGTTCTTGATTTCAAAGATGCTAGGCCAAGTTTAGAGAAGGTTTCATATTCACTTTTGATATTCTTTTGTGGAATGTTTATCACAGTAGATGGATTCAACAAAACTGGAATTCCAAGTGCTTTATGGGAGTTAATGGAGCCTTATTCACGAGTTGATCGTTCTAGCGGAATAGCGATACTTGCTCTAGTTATACTTGTCCTATCAAATTTGGCATCAAATGTACCAACCGAGGGAATTTTGGCTGGACTAGATAAGGCTTTTAATTTCTTGAAAATTACTCTTCTCCCTTTCCATTTGGCTGGACTAAAGGGCATGGCTCATATTGGCTTGGGTCAGCACTATAGCAGGGAACCTGTCACTATTGGGGTCAGCTGCAAACTTGATTGTTTGTGA
Protein sequence

>MsG0680032642.01.T01

MVLAPIPKVVLGSIAFAIFWILAVFPAVPFLPIGRTAGSLLGAMLMVIFRVITPEEAYAAIDLPILGLLFGTMVVSVYLERADMFKYIGKLLSWKSKGAKDLLCRICLISALSSALFTNDTSCVVLTEFILKIAKQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVESKISFGEFLFGIVPAMLVGVVVNALILIAMYWKLLSVHKDIEDPIAEVAAEEDVNSHQFSPATMSHYSSSLNSQELNGYIVESSSIQNSPQVHNLRNRMISSDSEIDRFHVGSTIDSARNSTASKEGTNNDLASQTKEETSPSKTVVEVDRTIEGHVLISSEGKDCLSAEWKRRLWKSCVYMITLGMLIAMLLGLNMSWTAISAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSALWELMEPYSRVDRSSGIAILALVILVLSNLASNVPTEGILAGLDKAFNFLKITLLPFHLAGLKGMAHIGLGQHYSREPVTIGVSCKLDCL*