Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040559.01.T01 | XP_003625216.1 | 100 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 9.54E-84 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040559.01.T01 | Q9STY6 | 89.344 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.28E-75 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040559.01.T01 | A2Q4V6 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 4.56e-84 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048938.01 | MsG0780040559.01 | -0.861651 | 8.834850e-64 | 2.517468e-60 |
| MsG0180000097.01 | MsG0780040559.01 | 0.858394 | 8.489371e-63 | 2.163467e-59 |
| MsG0180001062.01 | MsG0780040559.01 | -0.801473 | 8.856236e-49 | 4.233172e-46 |
| MsG0180001100.01 | MsG0780040559.01 | -0.825270 | 5.137120e-54 | 4.660140e-51 |
| MsG0180001888.01 | MsG0780040559.01 | -0.814355 | 1.607283e-51 | 1.076037e-48 |
| MsG0180003991.01 | MsG0780040559.01 | 0.847243 | 1.308123e-59 | 2.310710e-56 |
| MsG0180004025.01 | MsG0780040559.01 | -0.801448 | 8.960942e-49 | 4.280535e-46 |
| MsG0180005339.01 | MsG0780040559.01 | -0.801453 | 8.941895e-49 | 4.271896e-46 |
| MsG0180005829.01 | MsG0780040559.01 | -0.801049 | 1.081723e-48 | 5.115771e-46 |
| MsG0180006054.01 | MsG0780040559.01 | -0.829129 | 6.116212e-55 | 6.203378e-52 |
| MsG0180006222.01 | MsG0780040559.01 | -0.844364 | 7.915013e-59 | 1.274761e-55 |
| MsG0780040559.01 | MsG0780041080.01 | -0.815525 | 8.843103e-52 | 6.111506e-49 |
| MsG0780040559.01 | MsG0780041187.01 | -0.825109 | 5.606432e-54 | 5.062606e-51 |
| MsG0780040559.01 | MsG0780041191.01 | -0.863092 | 3.185580e-64 | 9.542218e-61 |
| MsG0780040559.01 | MsG0780041238.01 | 0.834017 | 3.820945e-56 | 4.477395e-53 |
| MsG0780040559.01 | MsG0780041301.01 | -0.862204 | 5.979736e-64 | 1.737104e-60 |
| MsG0780040559.01 | MsG0880041852.01 | -0.816870 | 4.424583e-52 | 3.172652e-49 |
| MsG0780040559.01 | MsG0880042000.01 | -0.843914 | 1.045370e-58 | 1.660299e-55 |
| MsG0780040559.01 | MsG0880042743.01 | -0.821168 | 4.659022e-53 | 3.762056e-50 |
| MsG0780040559.01 | MsG0880045285.01 | -0.806929 | 6.478662e-50 | 3.561072e-47 |
| MsG0780040559.01 | MsG0880045783.01 | -0.829485 | 5.014980e-55 | 5.139528e-52 |
| MsG0780040559.01 | MsG0880046207.01 | -0.805141 | 1.540585e-49 | 8.088692e-47 |
| MsG0780040559.01 | MsG0880047045.01 | -0.800234 | 1.585835e-48 | 7.345877e-46 |
| MsG0780040559.01 | MsG0880047046.01 | -0.819216 | 1.304839e-52 | 9.979194e-50 |
| MsG0280010916.01 | MsG0780040559.01 | -0.805307 | 1.422092e-49 | 7.498143e-47 |
| MsG0280011401.01 | MsG0780040559.01 | -0.801997 | 6.914400e-49 | 3.349107e-46 |
| MsG0380013342.01 | MsG0780040559.01 | -0.815336 | 9.742633e-52 | 6.698250e-49 |
| MsG0380014517.01 | MsG0780040559.01 | -0.811038 | 8.550671e-51 | 5.237533e-48 |
| MsG0380014727.01 | MsG0780040559.01 | -0.840902 | 6.574144e-58 | 9.500099e-55 |
| MsG0680031376.01 | MsG0780040559.01 | 0.836535 | 8.840004e-57 | 1.117217e-53 |
| MsG0680031377.01 | MsG0780040559.01 | 0.874889 | 4.743348e-68 | 2.171926e-64 |
| MsG0680031406.01 | MsG0780040559.01 | -0.806686 | 7.290899e-50 | 3.982380e-47 |
| MsG0680032642.01 | MsG0780040559.01 | -0.817507 | 3.180886e-52 | 2.320967e-49 |
| MsG0680034914.01 | MsG0780040559.01 | -0.813861 | 2.065630e-51 | 1.364485e-48 |
| MsG0480019188.01 | MsG0780040559.01 | -0.802838 | 4.638632e-49 | 2.295658e-46 |
| MsG0480020322.01 | MsG0780040559.01 | -0.832025 | 1.195825e-55 | 1.320458e-52 |
| MsG0480020323.01 | MsG0780040559.01 | -0.834378 | 3.103637e-56 | 3.676689e-53 |
| MsG0480021564.01 | MsG0780040559.01 | -0.839475 | 1.550175e-57 | 2.143177e-54 |
| MsG0480022145.01 | MsG0780040559.01 | -0.803847 | 2.867051e-49 | 1.456058e-46 |
| MsG0480022178.01 | MsG0780040559.01 | -0.805133 | 1.546394e-49 | 8.117431e-47 |
| MsG0480022330.01 | MsG0780040559.01 | -0.817110 | 3.907377e-52 | 2.820061e-49 |
| MsG0480022918.01 | MsG0780040559.01 | -0.809827 | 1.561233e-50 | 9.261396e-48 |
| MsG0480023641.01 | MsG0780040559.01 | -0.835662 | 1.472504e-56 | 1.812729e-53 |
| MsG0580024328.01 | MsG0780040559.01 | -0.804210 | 2.409936e-49 | 1.235273e-46 |
| MsG0580024435.01 | MsG0780040559.01 | -0.829783 | 4.242863e-55 | 4.386996e-52 |
| MsG0580024717.01 | MsG0780040559.01 | -0.804042 | 2.611558e-49 | 1.332928e-46 |
| MsG0580024775.01 | MsG0780040559.01 | -0.821357 | 4.214323e-53 | 3.420838e-50 |
| MsG0580024829.01 | MsG0780040559.01 | -0.803526 | 3.343021e-49 | 1.683828e-46 |
| MsG0580025644.01 | MsG0780040559.01 | -0.821231 | 4.505865e-53 | 3.644853e-50 |
| MsG0580026032.01 | MsG0780040559.01 | -0.844366 | 7.902684e-59 | 1.272854e-55 |
| MsG0380015745.01 | MsG0780040559.01 | -0.800968 | 1.123549e-48 | 5.302638e-46 |
| MsG0380015847.01 | MsG0780040559.01 | 0.839088 | 1.952979e-57 | 2.668174e-54 |
| MsG0380016182.01 | MsG0780040559.01 | -0.828852 | 7.138839e-55 | 7.181001e-52 |
| MsG0380016201.01 | MsG0780040559.01 | 0.888779 | 4.362732e-73 | 3.426138e-69 |
| MsG0380016527.01 | MsG0780040559.01 | -0.843520 | 1.332250e-58 | 2.089823e-55 |
| MsG0380017066.01 | MsG0780040559.01 | -0.803166 | 3.969149e-49 | 1.980711e-46 |
| MsG0280006669.01 | MsG0780040559.01 | -0.832360 | 9.883040e-56 | 1.102083e-52 |
| MsG0280006753.01 | MsG0780040559.01 | 0.825764 | 3.923048e-54 | 3.609287e-51 |
| MsG0280007864.01 | MsG0780040559.01 | 0.852776 | 3.697743e-61 | 7.812062e-58 |
| MsG0280008717.01 | MsG0780040559.01 | -0.808439 | 3.095479e-50 | 1.770036e-47 |
| MsG0280009757.01 | MsG0780040559.01 | -0.807841 | 4.150001e-50 | 2.335841e-47 |
| MsG0680035707.01 | MsG0780040559.01 | -0.803036 | 4.222108e-49 | 2.099868e-46 |
| MsG0780036803.01 | MsG0780040559.01 | -0.819547 | 1.096720e-52 | 8.465417e-50 |
| MsG0780037105.01 | MsG0780040559.01 | -0.819962 | 8.817285e-53 | 6.885356e-50 |
| MsG0780037399.01 | MsG0780040559.01 | -0.806083 | 9.771280e-50 | 5.255821e-47 |
| MsG0780039994.01 | MsG0780040559.01 | -0.803068 | 4.159284e-49 | 2.070205e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480019632.01 | MsG0780040559.01 | PPI |
| MsG0780040559.01 | MsG0280010203.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040559.01.T01 | MTR_7g092720 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 1.16e-87 | 250 |
| MsG0780040559.01.T01 | MTR_0157s0070 | 98.361 | 122 | 2 | 0 | 1 | 122 | 1 | 122 | 7.39e-87 | 248 |
| MsG0780040559.01.T01 | MTR_4g034030 | 98.361 | 122 | 2 | 0 | 1 | 122 | 1 | 122 | 7.39e-87 | 248 |
| MsG0780040559.01.T01 | MTR_2g085090 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 1.02e-83 | 240 |
| MsG0780040559.01.T01 | MTR_1g091057 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 1.02e-83 | 240 |
| MsG0780040559.01.T01 | MTR_4g034030 | 98.824 | 85 | 1 | 0 | 38 | 122 | 3 | 87 | 3.14e-58 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040559.01.T01 | AT3G47370 | 89.344 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.32e-76 | 222 |
| MsG0780040559.01.T01 | AT3G47370 | 89.344 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.32e-76 | 222 |
| MsG0780040559.01.T01 | AT3G47370 | 89.344 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.32e-76 | 222 |
| MsG0780040559.01.T01 | AT5G62300 | 89.256 | 121 | 13 | 0 | 2 | 122 | 4 | 124 | 2.00e-75 | 219 |
| MsG0780040559.01.T01 | AT5G62300 | 89.256 | 121 | 13 | 0 | 2 | 122 | 4 | 124 | 2.00e-75 | 219 |
| MsG0780040559.01.T01 | AT3G45030 | 89.256 | 121 | 13 | 0 | 2 | 122 | 4 | 124 | 2.00e-75 | 219 |
Find 50 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTGAGTGAATAGGTATT+AGG | 0.271593 | 7:-79190694 | None:intergenic |
| CACTGAGTGAATAGGTATTA+GGG | 0.329624 | 7:-79190693 | None:intergenic |
| GTTATTAGTTTGTGCTGATT+TGG | 0.351954 | 7:+79190929 | MsG0780040559.01.T01:intron |
| AAAGGGTGATCCTAATCTTA+TGG | 0.356442 | 7:-79190796 | None:intergenic |
| TTCTCCACAAGGAGTCTTCC+TGG | 0.359877 | 7:-79191027 | None:intergenic |
| TAAACTCTGAACAATCAAAA+TGG | 0.366742 | 7:+79190718 | MsG0780040559.01.T01:exon |
| GTAATCTGTTTAACAACATC+TGG | 0.381438 | 7:-79192045 | None:intergenic |
| AATCTTATGGATCTGCTCTT+GGG | 0.403761 | 7:-79190783 | None:intergenic |
| TAATCTTATGGATCTGCTCT+TGG | 0.405883 | 7:-79190784 | None:intergenic |
| GGATTCCTCCAAACCAGGCT+TGG | 0.415376 | 7:-79190762 | None:intergenic |
| GAAACCCACCAAGCCTGGTT+TGG | 0.420702 | 7:+79190754 | MsG0780040559.01.T01:CDS |
| TCCTCCAAACCAGGCTTGGT+GGG | 0.429749 | 7:-79190758 | None:intergenic |
| TTCCTCCAAACCAGGCTTGG+TGG | 0.433644 | 7:-79190759 | None:intergenic |
| GTGATATGAAGAACCTTAGT+AGG | 0.436083 | 7:-79191002 | None:intergenic |
| TTAGAGTGAAGGGTCCTGTT+AGG | 0.436691 | 7:+79190976 | MsG0780040559.01.T01:CDS |
| ACCTTAGTAGGCATCCTAAC+AGG | 0.444549 | 7:-79190990 | None:intergenic |
| AAGAGCAGATCCATAAGATT+AGG | 0.460004 | 7:+79190786 | MsG0780040559.01.T01:CDS |
| AGTTTAAACACTGAGTGAAT+AGG | 0.463482 | 7:-79190701 | None:intergenic |
| TTGTTGCAGGTACCAACACC+TGG | 0.473020 | 7:+79191971 | MsG0780040559.01.T01:intron |
| TTTGACATGCTTGGAGGAAA+GGG | 0.476236 | 7:-79190813 | None:intergenic |
| AGGTATTAGGGCGCCGCAGC+TGG | 0.488453 | 7:-79190681 | None:intergenic |
| ACCAGGTTCGATGGTGATAG+AGG | 0.489959 | 7:-79192067 | None:intergenic |
| GTTTGTGCTGATTTGGTTCG+TGG | 0.496204 | 7:+79190936 | MsG0780040559.01.T01:intron |
| GCGATGAAACCCACCAAGCC+TGG | 0.496657 | 7:+79190749 | MsG0780040559.01.T01:CDS |
| CGAACCTGGTGTCGAGGTTG+AGG | 0.501443 | 7:+79192080 | MsG0780040559.01.T01:CDS |
| TTTGTTATTTGGGACAAAGT+TGG | 0.502217 | 7:+79192187 | MsG0780040559.01.T01:three_prime_UTR |
| AGGAAGACTCCTTGTGGAGA+AGG | 0.508893 | 7:+79191029 | MsG0780040559.01.T01:CDS |
| TCCTGTTAGGATGCCTACTA+AGG | 0.508963 | 7:+79190989 | MsG0780040559.01.T01:CDS |
| ACCCACCAAGCCTGGTTTGG+AGG | 0.512859 | 7:+79190757 | MsG0780040559.01.T01:CDS |
| TCTTGGGATTCCTCCAAACC+AGG | 0.514536 | 7:-79190767 | None:intergenic |
| ACCTCTATCACCATCGAACC+TGG | 0.519945 | 7:+79192066 | MsG0780040559.01.T01:CDS |
| TAATCTGTTTAACAACATCT+GGG | 0.529679 | 7:-79192044 | None:intergenic |
| TGATTTGGTTCGTGGCGCTA+AGG | 0.536928 | 7:+79190944 | MsG0780040559.01.T01:CDS |
| AACCTCGACACCAGGTTCGA+TGG | 0.552766 | 7:-79192076 | None:intergenic |
| CACCATCGAACCTGGTGTCG+AGG | 0.559437 | 7:+79192074 | MsG0780040559.01.T01:CDS |
| CTCCTTTGATTCACCAGCTG+CGG | 0.563398 | 7:+79190668 | None:intergenic |
| CGATAACTCTCTTGTGCACA+CGG | 0.563868 | 7:-79192008 | None:intergenic |
| GGATAAGCATCTTAGAGTGA+AGG | 0.564807 | 7:+79190965 | MsG0780040559.01.T01:CDS |
| TTCAAATCTATCCCAGGTGT+TGG | 0.568966 | 7:-79191983 | None:intergenic |
| GATAAGCATCTTAGAGTGAA+GGG | 0.578400 | 7:+79190966 | MsG0780040559.01.T01:CDS |
| GTAACCTCAACCTCGACACC+AGG | 0.583580 | 7:-79192084 | None:intergenic |
| CAACATCTGGGGAACTGTAG+AGG | 0.590461 | 7:-79192032 | None:intergenic |
| ATCAAGCATAAAGTTTCTCA+AGG | 0.592726 | 7:-79192250 | None:intergenic |
| ACGGAGTTCAAATCTATCCC+AGG | 0.607565 | 7:-79191989 | None:intergenic |
| AGGTTCTTCATATCACTACC+AGG | 0.631821 | 7:+79191009 | MsG0780040559.01.T01:CDS |
| TTAAGATCAAGCATCTGCAA+TGG | 0.639875 | 7:-79192106 | None:intergenic |
| AATGAAATACCTTCTCCACA+AGG | 0.646547 | 7:-79191038 | None:intergenic |
| ACTACCAGGAAGACTCCTTG+TGG | 0.667890 | 7:+79191023 | MsG0780040559.01.T01:CDS |
| TGTTGCAGGTACCAACACCT+GGG | 0.671114 | 7:+79191972 | MsG0780040559.01.T01:intron |
| AATCTGTTTAACAACATCTG+GGG | 0.693040 | 7:-79192043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATAGTTTTGTTATT+TGG | + | Chr7:79192176-79192195 | MsG0780040559.01.T01:three_prime_UTR | 10.0% |
| !!! | TTCTCTTTAAAATAATAAAT+GGG | + | Chr7:79191407-79191426 | MsG0780040559.01.T01:intron | 10.0% |
| !!! | TTTTTATAGTTTTGTTATTT+GGG | + | Chr7:79192177-79192196 | MsG0780040559.01.T01:three_prime_UTR | 10.0% |
| !!! | GTTCTCTTTAAAATAATAAA+TGG | + | Chr7:79191406-79191425 | MsG0780040559.01.T01:intron | 15.0% |
| !!! | TTTTATGATTATTTGATGAA+AGG | + | Chr7:79191104-79191123 | MsG0780040559.01.T01:intron | 15.0% |
| !! | ACAAAACTATAAAAATACAG+AGG | - | Chr7:79192172-79192191 | None:intergenic | 20.0% |
| !! | AGACATAACAAGTTAAAAAT+GGG | - | Chr7:79192133-79192152 | None:intergenic | 20.0% |
| !! | ATAATAACAAAATGCAAAAG+AGG | - | Chr7:79191781-79191800 | None:intergenic | 20.0% |
| !! | CAAAACTATAAAAATACAGA+GGG | - | Chr7:79192171-79192190 | None:intergenic | 20.0% |
| !!! | TTTAATTCAGTTTTGTTGAA+TGG | + | Chr7:79191608-79191627 | MsG0780040559.01.T01:intron | 20.0% |
| ! | AATTATCCTACAACCTTAAT+TGG | + | Chr7:79191510-79191529 | MsG0780040559.01.T01:intron | 25.0% |
| ! | CAGACATAACAAGTTAAAAA+TGG | - | Chr7:79192134-79192153 | None:intergenic | 25.0% |
| ! | TAAACTCTGAACAATCAAAA+TGG | + | Chr7:79190718-79190737 | MsG0780040559.01.T01:exon | 25.0% |
| ! | TAATCTGTTTAACAACATCT+GGG | - | Chr7:79192047-79192066 | None:intergenic | 25.0% |
| !! | TGAGAGCATAAAAAACATAA+AGG | - | Chr7:79190871-79190890 | None:intergenic | 25.0% |
| !!! | GCATTTTGTTATTATGCTAT+TGG | + | Chr7:79191786-79191805 | MsG0780040559.01.T01:intron | 25.0% |
| !!! | TGTTTCTGAACAAATTTTGA+AGG | + | Chr7:79191653-79191672 | MsG0780040559.01.T01:intron | 25.0% |
| AATCTGTTTAACAACATCTG+GGG | - | Chr7:79192046-79192065 | None:intergenic | 30.0% | |
| AGATTAGAAACATCATTGAG+AGG | + | Chr7:79191142-79191161 | MsG0780040559.01.T01:intron | 30.0% | |
| AGTTTAAACACTGAGTGAAT+AGG | - | Chr7:79190704-79190723 | None:intergenic | 30.0% | |
| ATCAAGCATAAAGTTTCTCA+AGG | - | Chr7:79192253-79192272 | None:intergenic | 30.0% | |
| ATTTGATGAAAGGTAGTCAA+TGG | + | Chr7:79191114-79191133 | MsG0780040559.01.T01:intron | 30.0% | |
| GATTAGAAACATCATTGAGA+GGG | + | Chr7:79191143-79191162 | MsG0780040559.01.T01:intron | 30.0% | |
| GTAATCTGTTTAACAACATC+TGG | - | Chr7:79192048-79192067 | None:intergenic | 30.0% | |
| TAAAGAGAACAAACCAAACA+CGG | - | Chr7:79191396-79191415 | None:intergenic | 30.0% | |
| TCCTAATATGGCTTACAAAT+GGG | + | Chr7:79191283-79191302 | MsG0780040559.01.T01:intron | 30.0% | |
| ! | GTTTTTCTAAGCTCCTAATA+TGG | + | Chr7:79191271-79191290 | MsG0780040559.01.T01:intron | 30.0% |
| !! | GTTATTAGTTTGTGCTGATT+TGG | + | Chr7:79190929-79190948 | MsG0780040559.01.T01:intron | 30.0% |
| !! | TTTGTTATTTGGGACAAAGT+TGG | + | Chr7:79192187-79192206 | MsG0780040559.01.T01:three_prime_UTR | 30.0% |
| !!! | GGCTTGTTTTCTTTAGTTTT+CGG | + | Chr7:79192208-79192227 | MsG0780040559.01.T01:three_prime_UTR | 30.0% |
| !!! | TTTTCTTTAGTTTTCGGTTC+TGG | + | Chr7:79192214-79192233 | MsG0780040559.01.T01:three_prime_UTR | 30.0% |
| AAAGGGTGATCCTAATCTTA+TGG | - | Chr7:79190799-79190818 | None:intergenic | 35.0% | |
| AAATACGATATAGCCGTGTT+TGG | + | Chr7:79191380-79191399 | MsG0780040559.01.T01:intron | 35.0% | |
| AAGAGCAGATCCATAAGATT+AGG | + | Chr7:79190786-79190805 | MsG0780040559.01.T01:CDS | 35.0% | |
| AATCTTATGGATCTGCTCTT+GGG | - | Chr7:79190786-79190805 | None:intergenic | 35.0% | |
| AATGAAATACCTTCTCCACA+AGG | - | Chr7:79191041-79191060 | None:intergenic | 35.0% | |
| ACACTGAGTGAATAGGTATT+AGG | - | Chr7:79190697-79190716 | None:intergenic | 35.0% | |
| ACCCATTTGTAAGCCATATT+AGG | - | Chr7:79191287-79191306 | None:intergenic | 35.0% | |
| ATCCTACACTTCAATGACAA+TGG | - | Chr7:79191893-79191912 | None:intergenic | 35.0% | |
| CACTGAGTGAATAGGTATTA+GGG | - | Chr7:79190696-79190715 | None:intergenic | 35.0% | |
| CATGTCAAAAATCTCGAGAA+GGG | + | Chr7:79190827-79190846 | MsG0780040559.01.T01:CDS | 35.0% | |
| CTCCTAATATGGCTTACAAA+TGG | + | Chr7:79191282-79191301 | MsG0780040559.01.T01:intron | 35.0% | |
| GATAAGCATCTTAGAGTGAA+GGG | + | Chr7:79190966-79190985 | MsG0780040559.01.T01:CDS | 35.0% | |
| GCATCTAAATTTCCATAAGC+AGG | - | Chr7:79191336-79191355 | None:intergenic | 35.0% | |
| GTGATATGAAGAACCTTAGT+AGG | - | Chr7:79191005-79191024 | None:intergenic | 35.0% | |
| TAATCTTATGGATCTGCTCT+TGG | - | Chr7:79190787-79190806 | None:intergenic | 35.0% | |
| TGTGCATAGAAGAGAATCAA+CGG | - | Chr7:79191744-79191763 | None:intergenic | 35.0% | |
| TTAAGATCAAGCATCTGCAA+TGG | - | Chr7:79192109-79192128 | None:intergenic | 35.0% | |
| !! | AATTTTGAAGGACTCGACTA+CGG | + | Chr7:79191665-79191684 | MsG0780040559.01.T01:intron | 35.0% |
| !!! | CTTGATAGTGCTATGTTTTC+TGG | + | Chr7:79191850-79191869 | MsG0780040559.01.T01:intron | 35.0% |
| AAACCAATAGACGCAGAAGA+AGG | - | Chr7:79191447-79191466 | None:intergenic | 40.0% | |
| AACCAATAGACGCAGAAGAA+GGG | - | Chr7:79191446-79191465 | None:intergenic | 40.0% | |
| AGCCATTGTCATTGAAGTGT+AGG | + | Chr7:79191888-79191907 | MsG0780040559.01.T01:intron | 40.0% | |
| AGGTTCTTCATATCACTACC+AGG | + | Chr7:79191009-79191028 | MsG0780040559.01.T01:CDS | 40.0% | |
| ATGACCTTACTTCTTGTTGC+AGG | + | Chr7:79191958-79191977 | MsG0780040559.01.T01:intron | 40.0% | |
| CACTATCAAGTATTCAGCAG+AGG | - | Chr7:79191840-79191859 | None:intergenic | 40.0% | |
| CGTATGCCAATTAAGGTTGT+AGG | - | Chr7:79191519-79191538 | None:intergenic | 40.0% | |
| GCATGTCAAAAATCTCGAGA+AGG | + | Chr7:79190826-79190845 | MsG0780040559.01.T01:CDS | 40.0% | |
| GGATAAGCATCTTAGAGTGA+AGG | + | Chr7:79190965-79190984 | MsG0780040559.01.T01:CDS | 40.0% | |
| TACGTGTGAGAGTAAAAGGA+AGG | + | Chr7:79191535-79191554 | MsG0780040559.01.T01:intron | 40.0% | |
| TCAAGTATTCAGCAGAGGTT+TGG | - | Chr7:79191835-79191854 | None:intergenic | 40.0% | |
| TCTCACACGTATGCCAATTA+AGG | - | Chr7:79191526-79191545 | None:intergenic | 40.0% | |
| TGAGAGGGAACTGTTGAAAT+AGG | + | Chr7:79191158-79191177 | MsG0780040559.01.T01:intron | 40.0% | |
| TGATTCTCTTCTATGCACAC+TGG | + | Chr7:79191745-79191764 | MsG0780040559.01.T01:intron | 40.0% | |
| TTCAAATCTATCCCAGGTGT+TGG | - | Chr7:79191986-79192005 | None:intergenic | 40.0% | |
| TTTGACATGCTTGGAGGAAA+GGG | - | Chr7:79190816-79190835 | None:intergenic | 40.0% | |
| ! | CTCGAGATTTTTGACATGCT+TGG | - | Chr7:79190825-79190844 | None:intergenic | 40.0% |
| ! | GAGATTTTTGACATGCTTGG+AGG | - | Chr7:79190822-79190841 | None:intergenic | 40.0% |
| ! | TTTTGACATGCTTGGAGGAA+AGG | - | Chr7:79190817-79190836 | None:intergenic | 40.0% |
| !! | ATTTTGAAGGACTCGACTAC+GGG | + | Chr7:79191666-79191685 | MsG0780040559.01.T01:intron | 40.0% |
| ACCAATAGACGCAGAAGAAG+GGG | - | Chr7:79191445-79191464 | None:intergenic | 45.0% | |
| ACCTTAGTAGGCATCCTAAC+AGG | - | Chr7:79190993-79191012 | None:intergenic | 45.0% | |
| ACGGAGTTCAAATCTATCCC+AGG | - | Chr7:79191992-79192011 | None:intergenic | 45.0% | |
| CGATAACTCTCTTGTGCACA+CGG | - | Chr7:79192011-79192030 | None:intergenic | 45.0% | |
| GGCATACGTGTGAGAGTAAA+AGG | + | Chr7:79191531-79191550 | MsG0780040559.01.T01:intron | 45.0% | |
| GGTACCTGCAACAAGAAGTA+AGG | - | Chr7:79191965-79191984 | None:intergenic | 45.0% | |
| TCCTGTTAGGATGCCTACTA+AGG | + | Chr7:79190989-79191008 | MsG0780040559.01.T01:CDS | 45.0% | |
| TTAGAGTGAAGGGTCCTGTT+AGG | + | Chr7:79190976-79190995 | MsG0780040559.01.T01:CDS | 45.0% | |
| ! | TTCTATGCACACTGGTTGCA+AGG | + | Chr7:79191753-79191772 | MsG0780040559.01.T01:intron | 45.0% |
| !! | CCATAAGCAGGCTAGTTTCA+GGG | - | Chr7:79191324-79191343 | None:intergenic | 45.0% |
| !! | CGACTACGGGTTGGAATTAA+TGG | + | Chr7:79191679-79191698 | MsG0780040559.01.T01:intron | 45.0% |
| !! | GTTTGTGCTGATTTGGTTCG+TGG | + | Chr7:79190936-79190955 | MsG0780040559.01.T01:intron | 45.0% |
| !! | TCCATAAGCAGGCTAGTTTC+AGG | - | Chr7:79191325-79191344 | None:intergenic | 45.0% |
| ACCAGGTTCGATGGTGATAG+AGG | - | Chr7:79192070-79192089 | None:intergenic | 50.0% | |
| ACCTCTATCACCATCGAACC+TGG | + | Chr7:79192066-79192085 | MsG0780040559.01.T01:CDS | 50.0% | |
| ACTACCAGGAAGACTCCTTG+TGG | + | Chr7:79191023-79191042 | MsG0780040559.01.T01:CDS | 50.0% | |
| AGGAAGACTCCTTGTGGAGA+AGG | + | Chr7:79191029-79191048 | MsG0780040559.01.T01:CDS | 50.0% | |
| CAACATCTGGGGAACTGTAG+AGG | - | Chr7:79192035-79192054 | None:intergenic | 50.0% | |
| TCCCCTTCTTCTGCGTCTAT+TGG | + | Chr7:79191441-79191460 | MsG0780040559.01.T01:intron | 50.0% | |
| TCTTGGGATTCCTCCAAACC+AGG | - | Chr7:79190770-79190789 | None:intergenic | 50.0% | |
| TGTTGCAGGTACCAACACCT+GGG | + | Chr7:79191972-79191991 | MsG0780040559.01.T01:intron | 50.0% | |
| TTCTCCACAAGGAGTCTTCC+TGG | - | Chr7:79191030-79191049 | None:intergenic | 50.0% | |
| TTGTTGCAGGTACCAACACC+TGG | + | Chr7:79191971-79191990 | MsG0780040559.01.T01:intron | 50.0% | |
| ! | CCCTGAAACTAGCCTGCTTA+TGG | + | Chr7:79191321-79191340 | MsG0780040559.01.T01:intron | 50.0% |
| !! | CTGCGTCTATTGGTTTGTGC+TGG | + | Chr7:79191451-79191470 | MsG0780040559.01.T01:intron | 50.0% |
| !! | TGATTTGGTTCGTGGCGCTA+AGG | + | Chr7:79190944-79190963 | MsG0780040559.01.T01:CDS | 50.0% |
| AACCTCGACACCAGGTTCGA+TGG | - | Chr7:79192079-79192098 | None:intergenic | 55.0% | |
| GAAACCCACCAAGCCTGGTT+TGG | + | Chr7:79190754-79190773 | MsG0780040559.01.T01:CDS | 55.0% | |
| GGATTCCTCCAAACCAGGCT+TGG | - | Chr7:79190765-79190784 | None:intergenic | 55.0% | |
| GTAACCTCAACCTCGACACC+AGG | - | Chr7:79192087-79192106 | None:intergenic | 55.0% | |
| TGAAGGACTCGACTACGGGT+TGG | + | Chr7:79191670-79191689 | MsG0780040559.01.T01:intron | 55.0% | |
| TTCCTCCAAACCAGGCTTGG+TGG | - | Chr7:79190762-79190781 | None:intergenic | 55.0% | |
| ! | TCCTCCAAACCAGGCTTGGT+GGG | - | Chr7:79190761-79190780 | None:intergenic | 55.0% |
| GCGATGAAACCCACCAAGCC+TGG | + | Chr7:79190749-79190768 | MsG0780040559.01.T01:CDS | 60.0% | |
| ! | CACCATCGAACCTGGTGTCG+AGG | + | Chr7:79192074-79192093 | MsG0780040559.01.T01:CDS | 60.0% |
| ! | CGAACCTGGTGTCGAGGTTG+AGG | + | Chr7:79192080-79192099 | MsG0780040559.01.T01:CDS | 60.0% |
| !! | ACCCACCAAGCCTGGTTTGG+AGG | + | Chr7:79190757-79190776 | MsG0780040559.01.T01:CDS | 60.0% |
| !! | AGGTATTAGGGCGCCGCAGC+TGG | - | Chr7:79190684-79190703 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 79190675 | 79192333 | 79190675 | ID=MsG0780040559.01;Name=MsG0780040559.01 |
| Chr7 | mRNA | 79190675 | 79192333 | 79190675 | ID=MsG0780040559.01.T01;Parent=MsG0780040559.01;Name=MsG0780040559.01.T01;_AED=0.32;_eAED=0.32;_QI=62|1|1|1|1|1|3|211|122 |
| Chr7 | exon | 79190675 | 79190848 | 79190675 | ID=MsG0780040559.01.T01:exon:473;Parent=MsG0780040559.01.T01 |
| Chr7 | exon | 79190937 | 79191050 | 79190937 | ID=MsG0780040559.01.T01:exon:474;Parent=MsG0780040559.01.T01 |
| Chr7 | exon | 79191980 | 79192333 | 79191980 | ID=MsG0780040559.01.T01:exon:475;Parent=MsG0780040559.01.T01 |
| Chr7 | five_prime_UTR | 79190675 | 79190736 | 79190675 | ID=MsG0780040559.01.T01:five_prime_utr;Parent=MsG0780040559.01.T01 |
| Chr7 | CDS | 79190737 | 79190848 | 79190737 | ID=MsG0780040559.01.T01:cds;Parent=MsG0780040559.01.T01 |
| Chr7 | CDS | 79190937 | 79191050 | 79190937 | ID=MsG0780040559.01.T01:cds;Parent=MsG0780040559.01.T01 |
| Chr7 | CDS | 79191980 | 79192122 | 79191980 | ID=MsG0780040559.01.T01:cds;Parent=MsG0780040559.01.T01 |
| Chr7 | three_prime_UTR | 79192123 | 79192333 | 79192123 | ID=MsG0780040559.01.T01:three_prime_utr;Parent=MsG0780040559.01.T01 |
| Gene Sequence |
| Protein sequence |
