Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680032843.01.T01 | XP_003619410.2 | 93.927 | 247 | 15 | 0 | 1 | 247 | 1 | 247 | 3.47E-153 | 436 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680032843.01.T01 | G7KLF9 | 93.927 | 247 | 15 | 0 | 1 | 247 | 1 | 247 | 1.66e-153 | 436 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048291.01 | MsG0680032843.01 | 0.809083 | 2.254389e-50 | 1.311153e-47 |
MsG0180003943.01 | MsG0680032843.01 | 0.802301 | 5.986432e-49 | 2.922394e-46 |
MsG0180004099.01 | MsG0680032843.01 | 0.818025 | 2.430450e-52 | 1.798668e-49 |
MsG0680032843.01 | MsG0780038424.01 | 0.802323 | 5.923818e-49 | 2.893491e-46 |
MsG0480019922.01 | MsG0680032843.01 | 0.802823 | 4.673551e-49 | 2.312044e-46 |
MsG0580024489.01 | MsG0680032843.01 | 0.810917 | 9.079475e-51 | 5.543894e-48 |
MsG0380016703.01 | MsG0680032843.01 | 0.802846 | 4.621427e-49 | 2.287589e-46 |
MsG0380016994.01 | MsG0680032843.01 | 0.805198 | 1.498692e-49 | 7.880165e-47 |
MsG0480018397.01 | MsG0680032843.01 | 0.801138 | 1.037069e-48 | 4.915586e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680032843.01.T01 | MTR_6g052290 | 93.927 | 247 | 15 | 0 | 1 | 247 | 1 | 247 | 4.21e-157 | 436 |
MsG0680032843.01.T01 | MTR_1g099630 | 51.667 | 240 | 77 | 5 | 1 | 240 | 1 | 201 | 1.38e-71 | 218 |
MsG0680032843.01.T01 | MTR_8g017100 | 36.220 | 254 | 100 | 8 | 1 | 248 | 1 | 198 | 7.92e-34 | 121 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680032843.01.T01 | AT1G64700 | 40.291 | 206 | 98 | 5 | 1 | 204 | 1 | 183 | 1.46e-39 | 136 |
MsG0680032843.01.T01 | AT3G61920 | 33.333 | 213 | 77 | 6 | 1 | 204 | 1 | 157 | 4.34e-26 | 100 |
Find 75 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGATGAAATTGACTGTAAT+TGG | 0.207329 | 6:+50841777 | None:intergenic |
TTGGTCATTGGTTGGGAATA+TGG | 0.294493 | 6:+50841734 | None:intergenic |
TGGTGTTGCTGCTGCTGCTT+CGG | 0.298041 | 6:-50841253 | MsG0680032843.01.T01:CDS |
TAATCTAATGACATTCTATA+CGG | 0.310562 | 6:+50841513 | None:intergenic |
CCACAGAATCTTTCTCTTGT+AGG | 0.312297 | 6:-50841452 | MsG0680032843.01.T01:CDS |
GACAAAGTGGTTTGGAAGAT+TGG | 0.322275 | 6:+50841715 | None:intergenic |
GGGTAGTCAACTTTGTTGTT+AGG | 0.334136 | 6:+50841633 | None:intergenic |
GGTGTTGCTGCTGCTGCTTC+GGG | 0.344835 | 6:-50841252 | MsG0680032843.01.T01:CDS |
CATGTCCTTCTCGGATAATA+AGG | 0.354446 | 6:+50841574 | None:intergenic |
GTAGAAAGAGTACTGGGATT+TGG | 0.357776 | 6:-50841377 | MsG0680032843.01.T01:CDS |
ATCAAATTGACAAAGTGGTT+TGG | 0.365305 | 6:+50841707 | None:intergenic |
TGATGAAATTGACTGTAATT+GGG | 0.367925 | 6:+50841778 | None:intergenic |
GTCAAAGTCATAACATTTGA+TGG | 0.378394 | 6:-50841822 | MsG0680032843.01.T01:CDS |
TGGAAGATTGGTCATTGGTT+GGG | 0.384413 | 6:+50841727 | None:intergenic |
AACATGGGAAATTGCTTGTT+AGG | 0.387401 | 6:-50841870 | MsG0680032843.01.T01:CDS |
GCCTTAGTTCTAGACACTTA+AGG | 0.388149 | 6:-50841141 | None:intergenic |
ACTAAGGCATCAACCTTAGA+AGG | 0.390101 | 6:+50841156 | None:intergenic |
AGCAGCAGCAACACCACATT+TGG | 0.392123 | 6:+50841260 | None:intergenic |
CAAGCATTGTTTCTGATCAA+TGG | 0.392265 | 6:-50841206 | MsG0680032843.01.T01:CDS |
GAGACCTAACATGTCCTTCT+CGG | 0.397152 | 6:+50841565 | None:intergenic |
GATAATAAGGCCACCGTTGT+TGG | 0.407488 | 6:+50841587 | None:intergenic |
TGGTAGGAGTGCTCCTTCTA+AGG | 0.412801 | 6:-50841169 | MsG0680032843.01.T01:CDS |
TTATCCGAGAAGGACATGTT+AGG | 0.413196 | 6:-50841569 | MsG0680032843.01.T01:CDS |
ACCTTAAGTGTCTAGAACTA+AGG | 0.425904 | 6:+50841140 | None:intergenic |
TTGGGAATATGGCATGGCCT+TGG | 0.428069 | 6:+50841745 | None:intergenic |
GCTGCTGCTTCGGGTGGTTG+TGG | 0.430306 | 6:-50841243 | MsG0680032843.01.T01:CDS |
CACAGTCTCAATCAATTCCT+TGG | 0.431276 | 6:+50841293 | None:intergenic |
CGGAGTAGTAGAAAGAGTAC+TGG | 0.450581 | 6:-50841384 | MsG0680032843.01.T01:CDS |
ATTCTATACGGGGCGGGGAG+AGG | 0.465976 | 6:+50841525 | None:intergenic |
ATGACTTTGACCAATGTGTC+TGG | 0.466597 | 6:+50841834 | None:intergenic |
CAACTTTGTTGTTAGGTGAC+AGG | 0.467815 | 6:+50841640 | None:intergenic |
GGGGCGGGGAGAGGTGTTGT+AGG | 0.471757 | 6:+50841534 | None:intergenic |
TTGGAAGATTGGTCATTGGT+TGG | 0.479312 | 6:+50841726 | None:intergenic |
CAATTTGATGAGTTGGTGGC+AGG | 0.489858 | 6:-50841693 | MsG0680032843.01.T01:CDS |
AATCTAATGACATTCTATAC+GGG | 0.502162 | 6:+50841514 | None:intergenic |
TATAACTCCGGAAAAGTTGT+TGG | 0.507880 | 6:-50841340 | MsG0680032843.01.T01:CDS |
AACATTTGATGGCAACATCA+TGG | 0.516060 | 6:-50841811 | MsG0680032843.01.T01:CDS |
TCAGCGGTGGCAAAGATTGA+AGG | 0.516169 | 6:+50841612 | None:intergenic |
AACTCATCAAATTGACAAAG+TGG | 0.518124 | 6:+50841702 | None:intergenic |
ACTTTGTCAATTTGATGAGT+TGG | 0.522911 | 6:-50841700 | MsG0680032843.01.T01:CDS |
TTCATCACAAATGAATTCCA+AGG | 0.532652 | 6:-50841762 | MsG0680032843.01.T01:CDS |
ACCCTACACCTTGATAGTAT+TGG | 0.533238 | 6:+50841490 | None:intergenic |
TGGTTTGGAAGATTGGTCAT+TGG | 0.536765 | 6:+50841722 | None:intergenic |
TTAGATTACCAATACTATCA+AGG | 0.549144 | 6:-50841498 | MsG0680032843.01.T01:CDS |
ACCGTTGTTGGTCTCAGCGG+TGG | 0.553549 | 6:+50841599 | None:intergenic |
AATGACATTCTATACGGGGC+GGG | 0.558786 | 6:+50841519 | None:intergenic |
ACCAATACTATCAAGGTGTA+GGG | 0.562664 | 6:-50841491 | MsG0680032843.01.T01:CDS |
GTTGCTGCTGCTGCTTCGGG+TGG | 0.564091 | 6:-50841249 | MsG0680032843.01.T01:CDS |
TTGTCAATTTGATGAGTTGG+TGG | 0.566216 | 6:-50841697 | MsG0680032843.01.T01:CDS |
AGTGAAGTTGTGTATAACTC+CGG | 0.568519 | 6:-50841352 | MsG0680032843.01.T01:CDS |
GTCACAAGAGGTTTCAACCA+AGG | 0.572538 | 6:-50841310 | MsG0680032843.01.T01:CDS |
CAATGGAGTCTTTCTAGTAG+TGG | 0.572592 | 6:-50841189 | MsG0680032843.01.T01:CDS |
TACCAATACTATCAAGGTGT+AGG | 0.584243 | 6:-50841492 | MsG0680032843.01.T01:CDS |
CATTGGTTGGGAATATGGCA+TGG | 0.588108 | 6:+50841739 | None:intergenic |
GCCACCGTTGTTGGTCTCAG+CGG | 0.589099 | 6:+50841596 | None:intergenic |
GGAGTCTTTCTAGTAGTGGT+AGG | 0.594755 | 6:-50841185 | MsG0680032843.01.T01:CDS |
TTAGGTGACAGGACAGTCAT+CGG | 0.599408 | 6:+50841651 | None:intergenic |
GATGAAATTGACTGTAATTG+GGG | 0.613309 | 6:+50841779 | None:intergenic |
GGAGTAGTAGAAAGAGTACT+GGG | 0.617014 | 6:-50841383 | MsG0680032843.01.T01:CDS |
CAATGTGTCTGGATCTGAGT+TGG | 0.617915 | 6:+50841845 | None:intergenic |
ATGACATTCTATACGGGGCG+GGG | 0.620266 | 6:+50841520 | None:intergenic |
GCATTGTTAGTAGTAGTAGA+CGG | 0.626707 | 6:-50841404 | MsG0680032843.01.T01:CDS |
CAACTCAGATCCAGACACAT+TGG | 0.630608 | 6:-50841844 | MsG0680032843.01.T01:CDS |
CCTACAAGAGAAAGATTCTG+TGG | 0.632886 | 6:+50841452 | None:intergenic |
CAGCGGTGGCAAAGATTGAA+GGG | 0.640627 | 6:+50841613 | None:intergenic |
GGTGGCCTTATTATCCGAGA+AGG | 0.644171 | 6:-50841579 | MsG0680032843.01.T01:CDS |
AGGAATTGATTGAGACTGTG+AGG | 0.654667 | 6:-50841290 | MsG0680032843.01.T01:CDS |
GTGAGGATTGTAGCCAAATG+TGG | 0.663151 | 6:-50841273 | MsG0680032843.01.T01:CDS |
ACCGCTGAGACCAACAACGG+TGG | 0.664546 | 6:-50841597 | MsG0680032843.01.T01:CDS |
TAATGACATTCTATACGGGG+CGG | 0.671273 | 6:+50841518 | None:intergenic |
ACAAGAGAAAGATTCTGTGG+AGG | 0.691330 | 6:+50841455 | None:intergenic |
TGAAATTGACTGTAATTGGG+GGG | 0.691964 | 6:+50841781 | None:intergenic |
GCCACCGCTGAGACCAACAA+CGG | 0.694118 | 6:-50841600 | MsG0680032843.01.T01:CDS |
ATCTAATGACATTCTATACG+GGG | 0.698262 | 6:+50841515 | None:intergenic |
ATGAAATTGACTGTAATTGG+GGG | 0.726418 | 6:+50841780 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATCTAATGACATTCTATA+CGG | + | Chr6:50841500-50841519 | None:intergenic | 20.0% |
! | AATCTAATGACATTCTATAC+GGG | + | Chr6:50841499-50841518 | None:intergenic | 25.0% |
! | TGATGAAATTGACTGTAATT+GGG | + | Chr6:50841235-50841254 | None:intergenic | 25.0% |
! | TTAGATTACCAATACTATCA+AGG | - | Chr6:50841512-50841531 | MsG0680032843.01.T01:CDS | 25.0% |
AACTCATCAAATTGACAAAG+TGG | + | Chr6:50841311-50841330 | None:intergenic | 30.0% | |
ACTTTGTCAATTTGATGAGT+TGG | - | Chr6:50841310-50841329 | MsG0680032843.01.T01:CDS | 30.0% | |
ATCAAATTGACAAAGTGGTT+TGG | + | Chr6:50841306-50841325 | None:intergenic | 30.0% | |
ATCTAATGACATTCTATACG+GGG | + | Chr6:50841498-50841517 | None:intergenic | 30.0% | |
ATGAAATTGACTGTAATTGG+GGG | + | Chr6:50841233-50841252 | None:intergenic | 30.0% | |
GATGAAATTGACTGTAATTG+GGG | + | Chr6:50841234-50841253 | None:intergenic | 30.0% | |
GTCAAAGTCATAACATTTGA+TGG | - | Chr6:50841188-50841207 | MsG0680032843.01.T01:CDS | 30.0% | |
GTGATGAAATTGACTGTAAT+TGG | + | Chr6:50841236-50841255 | None:intergenic | 30.0% | |
TTCATCACAAATGAATTCCA+AGG | - | Chr6:50841248-50841267 | MsG0680032843.01.T01:CDS | 30.0% | |
! | AAAATCTCCAACAACTTTTC+CGG | + | Chr6:50841680-50841699 | None:intergenic | 30.0% |
ACCAATACTATCAAGGTGTA+GGG | - | Chr6:50841519-50841538 | MsG0680032843.01.T01:CDS | 35.0% | |
AGTGAAGTTGTGTATAACTC+CGG | - | Chr6:50841658-50841677 | MsG0680032843.01.T01:CDS | 35.0% | |
GCATTGTTAGTAGTAGTAGA+CGG | - | Chr6:50841606-50841625 | MsG0680032843.01.T01:CDS | 35.0% | |
TACCAATACTATCAAGGTGT+AGG | - | Chr6:50841518-50841537 | MsG0680032843.01.T01:CDS | 35.0% | |
TATAACTCCGGAAAAGTTGT+TGG | - | Chr6:50841670-50841689 | MsG0680032843.01.T01:CDS | 35.0% | |
TGAAATTGACTGTAATTGGG+GGG | + | Chr6:50841232-50841251 | None:intergenic | 35.0% | |
! | AACATTTGATGGCAACATCA+TGG | - | Chr6:50841199-50841218 | MsG0680032843.01.T01:CDS | 35.0% |
! | TTGTCAATTTGATGAGTTGG+TGG | - | Chr6:50841313-50841332 | MsG0680032843.01.T01:CDS | 35.0% |
!! | CAAGCATTGTTTCTGATCAA+TGG | - | Chr6:50841804-50841823 | MsG0680032843.01.T01:CDS | 35.0% |
ACAAGAGAAAGATTCTGTGG+AGG | + | Chr6:50841558-50841577 | None:intergenic | 40.0% | |
AGGAATTGATTGAGACTGTG+AGG | - | Chr6:50841720-50841739 | MsG0680032843.01.T01:CDS | 40.0% | |
ATGACTTTGACCAATGTGTC+TGG | + | Chr6:50841179-50841198 | None:intergenic | 40.0% | |
CACAGTCTCAATCAATTCCT+TGG | + | Chr6:50841720-50841739 | None:intergenic | 40.0% | |
CATGTCCTTCTCGGATAATA+AGG | + | Chr6:50841439-50841458 | None:intergenic | 40.0% | |
CCACAGAATCTTTCTCTTGT+AGG | - | Chr6:50841558-50841577 | MsG0680032843.01.T01:CDS | 40.0% | |
CCTACAAGAGAAAGATTCTG+TGG | + | Chr6:50841561-50841580 | None:intergenic | 40.0% | |
TAATGACATTCTATACGGGG+CGG | + | Chr6:50841495-50841514 | None:intergenic | 40.0% | |
TTATCCGAGAAGGACATGTT+AGG | - | Chr6:50841441-50841460 | MsG0680032843.01.T01:CDS | 40.0% | |
! | ACCCTACACCTTGATAGTAT+TGG | + | Chr6:50841523-50841542 | None:intergenic | 40.0% |
! | ACTAAGGCATCAACCTTAGA+AGG | + | Chr6:50841857-50841876 | None:intergenic | 40.0% |
! | CAATGGAGTCTTTCTAGTAG+TGG | - | Chr6:50841821-50841840 | MsG0680032843.01.T01:CDS | 40.0% |
! | GACAAAGTGGTTTGGAAGAT+TGG | + | Chr6:50841298-50841317 | None:intergenic | 40.0% |
! | GTTGGAGATTTTGTCACAAG+AGG | - | Chr6:50841688-50841707 | MsG0680032843.01.T01:CDS | 40.0% |
! | TGGAAGATTGGTCATTGGTT+GGG | + | Chr6:50841286-50841305 | None:intergenic | 40.0% |
! | TGGTTTGGAAGATTGGTCAT+TGG | + | Chr6:50841291-50841310 | None:intergenic | 40.0% |
! | TTGGAAGATTGGTCATTGGT+TGG | + | Chr6:50841287-50841306 | None:intergenic | 40.0% |
! | TTGGTCATTGGTTGGGAATA+TGG | + | Chr6:50841279-50841298 | None:intergenic | 40.0% |
!! | CAACTTTGTTGTTAGGTGAC+AGG | + | Chr6:50841373-50841392 | None:intergenic | 40.0% |
!! | GGAGTAGTAGAAAGAGTACT+GGG | - | Chr6:50841627-50841646 | MsG0680032843.01.T01:CDS | 40.0% |
!! | GGGTAGTCAACTTTGTTGTT+AGG | + | Chr6:50841380-50841399 | None:intergenic | 40.0% |
!! | GTAGAAAGAGTACTGGGATT+TGG | - | Chr6:50841633-50841652 | MsG0680032843.01.T01:CDS | 40.0% |
AATGACATTCTATACGGGGC+GGG | + | Chr6:50841494-50841513 | None:intergenic | 45.0% | |
CAACTCAGATCCAGACACAT+TGG | - | Chr6:50841166-50841185 | MsG0680032843.01.T01:CDS | 45.0% | |
CAATGTGTCTGGATCTGAGT+TGG | + | Chr6:50841168-50841187 | None:intergenic | 45.0% | |
GAGACCTAACATGTCCTTCT+CGG | + | Chr6:50841448-50841467 | None:intergenic | 45.0% | |
GATAATAAGGCCACCGTTGT+TGG | + | Chr6:50841426-50841445 | None:intergenic | 45.0% | |
GTCACAAGAGGTTTCAACCA+AGG | - | Chr6:50841700-50841719 | MsG0680032843.01.T01:CDS | 45.0% | |
GTGAGGATTGTAGCCAAATG+TGG | - | Chr6:50841737-50841756 | MsG0680032843.01.T01:CDS | 45.0% | |
TTAGGTGACAGGACAGTCAT+CGG | + | Chr6:50841362-50841381 | None:intergenic | 45.0% | |
! | CATTGGTTGGGAATATGGCA+TGG | + | Chr6:50841274-50841293 | None:intergenic | 45.0% |
! | CGGAGTAGTAGAAAGAGTAC+TGG | - | Chr6:50841626-50841645 | MsG0680032843.01.T01:CDS | 45.0% |
! | GGAGTCTTTCTAGTAGTGGT+AGG | - | Chr6:50841825-50841844 | MsG0680032843.01.T01:CDS | 45.0% |
!! | CAATTTGATGAGTTGGTGGC+AGG | - | Chr6:50841317-50841336 | MsG0680032843.01.T01:CDS | 45.0% |
AGCAGCAGCAACACCACATT+TGG | + | Chr6:50841753-50841772 | None:intergenic | 50.0% | |
ATGACATTCTATACGGGGCG+GGG | + | Chr6:50841493-50841512 | None:intergenic | 50.0% | |
CAGCGGTGGCAAAGATTGAA+GGG | + | Chr6:50841400-50841419 | None:intergenic | 50.0% | |
TCAGCGGTGGCAAAGATTGA+AGG | + | Chr6:50841401-50841420 | None:intergenic | 50.0% | |
TTGGGAATATGGCATGGCCT+TGG | + | Chr6:50841268-50841287 | None:intergenic | 50.0% | |
!! | GGTGGCCTTATTATCCGAGA+AGG | - | Chr6:50841431-50841450 | MsG0680032843.01.T01:CDS | 50.0% |
!! | TGGTAGGAGTGCTCCTTCTA+AGG | - | Chr6:50841841-50841860 | MsG0680032843.01.T01:CDS | 50.0% |
!! | TGGTGTTGCTGCTGCTGCTT+CGG | - | Chr6:50841757-50841776 | MsG0680032843.01.T01:CDS | 55.0% |
ACCGCTGAGACCAACAACGG+TGG | - | Chr6:50841413-50841432 | MsG0680032843.01.T01:CDS | 60.0% | |
ATTCTATACGGGGCGGGGAG+AGG | + | Chr6:50841488-50841507 | None:intergenic | 60.0% | |
GCCACCGCTGAGACCAACAA+CGG | - | Chr6:50841410-50841429 | MsG0680032843.01.T01:CDS | 60.0% | |
! | ACCGTTGTTGGTCTCAGCGG+TGG | + | Chr6:50841414-50841433 | None:intergenic | 60.0% |
! | GCCACCGTTGTTGGTCTCAG+CGG | + | Chr6:50841417-50841436 | None:intergenic | 60.0% |
!! | GGTGTTGCTGCTGCTGCTTC+GGG | - | Chr6:50841758-50841777 | MsG0680032843.01.T01:CDS | 60.0% |
! | GCTGCTGCTTCGGGTGGTTG+TGG | - | Chr6:50841767-50841786 | MsG0680032843.01.T01:CDS | 65.0% |
! | GTTGCTGCTGCTGCTTCGGG+TGG | - | Chr6:50841761-50841780 | MsG0680032843.01.T01:CDS | 65.0% |
!! | GGGGCGGGGAGAGGTGTTGT+AGG | + | Chr6:50841479-50841498 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 50841143 | 50841889 | 50841143 | ID=MsG0680032843.01;Name=MsG0680032843.01 |
Chr6 | mRNA | 50841143 | 50841889 | 50841143 | ID=MsG0680032843.01.T01;Parent=MsG0680032843.01;Name=MsG0680032843.01.T01;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|248 |
Chr6 | exon | 50841143 | 50841889 | 50841143 | ID=MsG0680032843.01.T01:exon:10256;Parent=MsG0680032843.01.T01 |
Chr6 | CDS | 50841143 | 50841889 | 50841143 | ID=MsG0680032843.01.T01:cds;Parent=MsG0680032843.01.T01 |
Gene Sequence |
Protein sequence |