AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003943.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003943.01.T01 MTR_1g071450 97.137 489 10 2 1 489 1 485 0.0 972
MsG0180003943.01.T01 MTR_7g095500 77.101 476 87 11 1 472 1 458 0.0 627
MsG0180003943.01.T01 MTR_1g041395 65.385 468 144 7 26 487 13 468 4.89e-159 459
MsG0180003943.01.T01 MTR_1g041395 65.385 468 143 7 26 487 13 467 1.36e-158 458
MsG0180003943.01.T01 MTR_1g041395 64.831 472 146 7 26 487 13 474 1.68e-158 458
MsG0180003943.01.T01 MTR_1g102980 61.505 465 148 8 24 487 20 454 1.01e-136 402
MsG0180003943.01.T01 MTR_1g041395 73.333 300 79 1 188 487 39 337 1.54e-113 338
MsG0180003943.01.T01 MTR_1g102980 65.868 334 101 4 155 487 8 329 6.98e-101 306
MsG0180003943.01.T01 MTR_3g110182 38.242 455 198 12 26 478 33 406 4.88e-67 221
MsG0180003943.01.T01 MTR_4g039910 47.692 260 101 6 188 438 100 333 9.83e-52 179
MsG0180003943.01.T01 MTR_3g110182 37.817 394 163 11 26 417 31 344 3.90e-45 162
MsG0180003943.01.T01 MTR_5g012870 37.417 302 148 7 189 481 113 382 3.37e-43 157
MsG0180003943.01.T01 MTR_7g095630 68.750 64 19 1 91 153 83 146 1.62e-19 87.0
MsG0180003943.01.T01 MTR_7g095630 57.812 64 21 2 208 269 140 199 1.13e-11 64.3
MsG0180003943.01.T01 MTR_4g019730 58.621 58 22 1 404 461 1 56 2.02e-15 73.2
MsG0180003943.01.T01 MTR_4g129510 32.082 293 157 7 189 479 118 370 2.10e-14 75.1
MsG0180003943.01.T01 MTR_4g129510 32.082 293 157 7 189 479 87 339 1.43e-13 72.4
MsG0180003943.01.T01 MTR_4g129510 36.620 213 102 3 189 400 118 298 1.69e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003943.01.T01 AT3G22810 63.257 479 155 10 14 486 6 469 0.0 517
MsG0180003943.01.T01 AT4G14740 63.270 471 153 10 24 486 16 474 3.92e-173 496
MsG0180003943.01.T01 AT4G14740 63.270 471 153 10 24 486 16 474 3.92e-173 496
MsG0180003943.01.T01 AT3G63300 62.677 493 163 11 7 489 11 492 1.28e-165 478
MsG0180003943.01.T01 AT5G43870 59.072 474 152 11 19 486 15 452 9.99e-149 433
MsG0180003943.01.T01 AT3G22810 62.774 411 132 10 14 418 6 401 7.45e-140 409
MsG0180003943.01.T01 AT3G22810 66.566 332 107 3 156 486 3 331 1.87e-136 397
MsG0180003943.01.T01 AT4G14740 61.881 404 134 10 24 419 16 407 9.23e-133 390
MsG0180003943.01.T01 AT4G14740 67.262 336 102 4 156 486 3 335 1.98e-132 387
MsG0180003943.01.T01 AT5G43870 58.128 406 130 10 19 419 15 385 7.23e-112 336
MsG0180003943.01.T01 AT3G63300 64.118 340 111 7 155 489 1 334 1.15e-109 329
MsG0180003943.01.T01 AT4G17350 36.544 353 166 10 138 480 82 386 1.33e-41 153
MsG0180003943.01.T01 AT4G32780 34.581 454 203 10 26 478 35 395 2.07e-41 153
MsG0180003943.01.T01 AT4G32780 35.463 454 199 10 26 478 54 414 3.74e-41 152
MsG0180003943.01.T01 AT4G16670 35.644 303 163 8 189 481 132 412 5.23e-38 144
MsG0180003943.01.T01 AT5G47440 34.421 337 181 8 157 481 79 387 9.87e-38 143
MsG0180003943.01.T01 AT4G16670 37.083 240 120 7 189 418 132 350 3.21e-26 109
MsG0180003943.01.T01 AT4G16670 33.086 269 120 8 189 418 132 379 1.12e-20 94.4
MsG0180003943.01.T01 AT5G57770 33.793 290 157 6 141 428 82 338 3.31e-20 93.2
MsG0180003943.01.T01 AT5G57770 33.577 274 150 5 141 412 82 325 1.92e-19 90.1

Find 80 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAAGAACCACCATTTAA+TGG 0.205078 1:+70705338 None:intergenic
ACCAAATAAGGATGAGAAAA+TGG 0.261318 1:-70703900 MsG0180003943.01.T01:CDS
CAGCATGAAGTTGAGCATTA+TGG 0.291068 1:+70703990 None:intergenic
TTAAATGGTGGTTCTTTAAC+AGG 0.293923 1:-70705335 MsG0180003943.01.T01:CDS
GCTCTTGTACCATTGAATAA+AGG 0.299178 1:+70704115 None:intergenic
TTCCTCTAGCAAGAAGTTCT+TGG 0.299562 1:+70702960 None:intergenic
GACAATCTACCTGATGTTAA+TGG 0.299992 1:+70705374 None:intergenic
TCCTCTAAAAGATGCCTTCC+TGG 0.305425 1:+70702499 None:intergenic
AGAAACTCCATTGGTATTCT+AGG 0.306883 1:+70705844 None:intergenic
AGCATCAACTACACCAAATA+AGG 0.313923 1:-70703912 MsG0180003943.01.T01:CDS
CCTTGATATATGCAGCTCTA+AGG 0.317117 1:-70703168 MsG0180003943.01.T01:intron
AACTCATCAGAAGGAGAAAT+TGG 0.321795 1:+70705299 None:intergenic
GAAGGAGGAGGTGGTGGTTG+AGG 0.346886 1:+70705772 None:intergenic
CATAGCAGTGAACCATTAAA+TGG 0.367882 1:-70705350 MsG0180003943.01.T01:CDS
GGCAATGCAACTCCTTGTTC+AGG 0.369214 1:-70704076 MsG0180003943.01.T01:CDS
AGAGTAGTAATACTTTCTTC+AGG 0.380242 1:+70705709 None:intergenic
TTATTTGTAGAAGACTTAGA+AGG 0.384237 1:+70705739 None:intergenic
CTTGAGAAAAGCATAGGAAT+TGG 0.387663 1:-70703079 MsG0180003943.01.T01:CDS
CTCTTGTACCATTGAATAAA+GGG 0.392154 1:+70704116 None:intergenic
TCCATACACCCTTTATTCAA+TGG 0.400317 1:-70704124 MsG0180003943.01.T01:CDS
CAAGAAGAAGGAGGAGGTGG+TGG 0.403057 1:+70705766 None:intergenic
AGAGCTATGAGTAGTGGAAT+TGG 0.425775 1:-70704097 MsG0180003943.01.T01:CDS
GAAAATGGCTAAGACTGATA+TGG 0.426643 1:-70703885 MsG0180003943.01.T01:CDS
TGGAGTTTCTTTCAAGGTCA+TGG 0.443835 1:-70705831 MsG0180003943.01.T01:CDS
ACCATTGAATAAAGGGTGTA+TGG 0.446282 1:+70704123 None:intergenic
TATCTGTAGGTGATCTTCAC+TGG 0.451022 1:-70702824 MsG0180003943.01.T01:intron
TCTGTTTATATACATCGAAC+CGG 0.472832 1:-70702792 MsG0180003943.01.T01:CDS
AAGCAAGAAGAAGGAGGAGG+TGG 0.473902 1:+70705763 None:intergenic
GTGTTGCCATTGTTATTTGT+TGG 0.477598 1:+70705883 None:intergenic
ATTGGTATTCTAGGACTCTC+TGG 0.477798 1:+70705853 None:intergenic
TGACAATGGATAGTTAACTT+TGG 0.480512 1:+70705922 None:intergenic
CTTGATATATGCAGCTCTAA+GGG 0.484756 1:-70703167 MsG0180003943.01.T01:intron
AGTTCTAGCACTAGTGAAAG+TGG 0.488106 1:-70703025 MsG0180003943.01.T01:CDS
TACCAATGGAGTTTCTTTCA+AGG 0.496026 1:-70705837 MsG0180003943.01.T01:CDS
ATTGGAATATGTGGTGGTAA+AGG 0.499899 1:-70703061 MsG0180003943.01.T01:CDS
TGCCATTGTTATTTGTTGGA+AGG 0.506542 1:+70705887 None:intergenic
AGCATAGGAATTGGAATATG+TGG 0.506802 1:-70703070 MsG0180003943.01.T01:CDS
GGTACTCATTTCTATGACAA+TGG 0.513249 1:+70705908 None:intergenic
AGATGCCTTCCTGGCCAAGC+TGG 0.516445 1:+70702508 None:intergenic
TGTGCACAAATTTACCAGCT+TGG 0.518454 1:-70702522 MsG0180003943.01.T01:CDS
ACAAATTTACCAGCTTGGCC+AGG 0.521574 1:-70702517 MsG0180003943.01.T01:CDS
TGAGTTTGACGATGTTGTTA+AGG 0.540707 1:-70705282 MsG0180003943.01.T01:intron
TAGTTTAGTTACCTCTCTTG+CGG 0.541433 1:+70705594 None:intergenic
ATCAAAGAGAATATGAATTG+TGG 0.548198 1:-70702408 MsG0180003943.01.T01:CDS
CTAACTGCTGCAGCTGCCAC+AGG 0.549453 1:-70703728 MsG0180003943.01.T01:intron
TTATATACATCGAACCGGCC+AGG 0.552074 1:-70702787 MsG0180003943.01.T01:intron
GAAGTGTCTCCATTAACATC+AGG 0.553106 1:-70705383 MsG0180003943.01.T01:CDS
TTAGAAGGTAAGCAAGAAGA+AGG 0.556769 1:+70705754 None:intergenic
GACCTAAAACAGTAGGAAGA+TGG 0.556861 1:-70704054 MsG0180003943.01.T01:CDS
CAAGATTTCTCAAACATGTG+TGG 0.561026 1:-70705682 MsG0180003943.01.T01:CDS
ATGAAAAGCAGACATGTAGC+AGG 0.561812 1:-70702670 MsG0180003943.01.T01:CDS
GGTAAGCAAGAAGAAGGAGG+AGG 0.564082 1:+70705760 None:intergenic
TGTTGAAGCTGCTGAAGCAA+TGG 0.569846 1:-70703825 MsG0180003943.01.T01:CDS
TCATCAGAAGGAGAAATTGG+TGG 0.570671 1:+70705302 None:intergenic
TTACTCAAACGCACTCGCAA+AGG 0.576539 1:-70702932 MsG0180003943.01.T01:intron
CACTAGTGAAAGTGGAGGAG+AGG 0.579388 1:-70703017 MsG0180003943.01.T01:CDS
ATTTACCAGCTTGGCCAGGA+AGG 0.579688 1:-70702513 MsG0180003943.01.T01:CDS
GGCTAAGACTGATATGGCTG+TGG 0.584637 1:-70703879 MsG0180003943.01.T01:CDS
GACCTTGAAAGAAACTCCAT+TGG 0.585295 1:+70705835 None:intergenic
GTTGAAGCTGCTGAAGCAAT+GGG 0.585546 1:-70703824 MsG0180003943.01.T01:CDS
ACATCGTCAAACTCATCAGA+AGG 0.588966 1:+70705290 None:intergenic
TGATATATGCAGCTCTAAGG+GGG 0.594778 1:-70703165 MsG0180003943.01.T01:intron
AGAGAGTCCTAGAATACCAA+TGG 0.596028 1:-70705851 MsG0180003943.01.T01:CDS
CAAGAGCAATGAAAGAGATG+TGG 0.596042 1:-70703126 MsG0180003943.01.T01:CDS
GGTACAAGAGCTATGAGTAG+TGG 0.599275 1:-70704103 MsG0180003943.01.T01:CDS
TTCTTTCCATTGTTTCACAA+AGG 0.601255 1:-70702366 MsG0180003943.01.T01:CDS
TGTTCAGGACCTAAAACAGT+AGG 0.601269 1:-70704061 MsG0180003943.01.T01:CDS
AGCCAAGAACTTCTTGCTAG+AGG 0.604636 1:-70702962 MsG0180003943.01.T01:CDS
TTGATATATGCAGCTCTAAG+GGG 0.610071 1:-70703166 MsG0180003943.01.T01:intron
ACACCACTTGAGAAAAGCAT+AGG 0.613376 1:-70703085 MsG0180003943.01.T01:CDS
CATGTCACAATCCGCAAGAG+AGG 0.623909 1:-70705605 MsG0180003943.01.T01:intron
TACCTTCCAACAAATAACAA+TGG 0.629115 1:-70705889 MsG0180003943.01.T01:CDS
GAAGGTAAGCAAGAAGAAGG+AGG 0.632750 1:+70705757 None:intergenic
ATAGGAATTGGAATATGTGG+TGG 0.638819 1:-70703067 MsG0180003943.01.T01:CDS
GAATATGAATTGTGGACACA+AGG 0.642531 1:-70702400 MsG0180003943.01.T01:CDS
TCTAGCACTAGTGAAAGTGG+AGG 0.643530 1:-70703022 MsG0180003943.01.T01:CDS
CAGAACTAACAACAGAAGCA+AGG 0.657396 1:+70703786 None:intergenic
AGCAGTGAACCATTAAATGG+TGG 0.669009 1:-70705347 MsG0180003943.01.T01:CDS
GATATATGCAGCTCTAAGGG+GGG 0.694136 1:-70703164 MsG0180003943.01.T01:intron
GGATTGAAGACAGAATCAAG+AGG 0.704203 1:-70702454 MsG0180003943.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTCATATTATTTATTT+AGG - Chr1:70704777-70704796 MsG0180003943.01.T01:intron 10.0%
!! TATATAAAAAAAATAAAGGT+TGG + Chr1:70704635-70704654 None:intergenic 10.0%
!! TCATTCATATTATTTATTTA+GGG - Chr1:70704778-70704797 MsG0180003943.01.T01:intron 10.0%
!! AAGCATATCATTAATAATAT+TGG + Chr1:70704095-70704114 None:intergenic 15.0%
!! CAAAATGATTAAACTATATT+TGG - Chr1:70705419-70705438 MsG0180003943.01.T01:intron 15.0%
!!! GTTTTTTGTTTATAGTAATT+TGG - Chr1:70702842-70702861 MsG0180003943.01.T01:intron 15.0%
!! AAAAAATCATACTACTAAAC+AGG + Chr1:70705051-70705070 None:intergenic 20.0%
!! CATAGAAATAATAACTCATT+TGG - Chr1:70705690-70705709 MsG0180003943.01.T01:CDS 20.0%
!! TGAAAGATAAAAAAATTACC+TGG + Chr1:70705507-70705526 None:intergenic 20.0%
!!! ACTCTTTTTCTTTTTTGTAA+TGG + Chr1:70705631-70705650 None:intergenic 20.0%
!!! ATATTATTTATTTAGGGTAG+TGG - Chr1:70704784-70704803 MsG0180003943.01.T01:intron 20.0%
!!! ATTATTTCTATGATATTGCA+AGG + Chr1:70705682-70705701 None:intergenic 20.0%
!!! CAAATGTTTGTAACAATTTT+AGG - Chr1:70705569-70705588 MsG0180003943.01.T01:intron 20.0%
!!! GTACTAGTAGTATTTTATTA+TGG + Chr1:70703391-70703410 None:intergenic 20.0%
!!! TAAAGTTTGTTTTATGTAAC+AGG - Chr1:70702868-70702887 MsG0180003943.01.T01:intron 20.0%
!!! TCAGAATTTTTTTATTCAGA+TGG - Chr1:70704068-70704087 MsG0180003943.01.T01:CDS 20.0%
! AAATACTACTAGTACTTTCT+TGG - Chr1:70703396-70703415 MsG0180003943.01.T01:intron 25.0%
! AATCTCGATTAGAAAATGTA+TGG + Chr1:70704821-70704840 None:intergenic 25.0%
! AGTACTTTCTTGGTTTAATA+TGG - Chr1:70703406-70703425 MsG0180003943.01.T01:intron 25.0%
! AGTAGAAATTGAAATTCAGT+TGG - Chr1:70705533-70705552 MsG0180003943.01.T01:intron 25.0%
! ATATGTAGGAAAAGACTTAA+GGG - Chr1:70702734-70702753 MsG0180003943.01.T01:intron 25.0%
! ATCAAAGAGAATATGAATTG+TGG - Chr1:70705865-70705884 MsG0180003943.01.T01:CDS 25.0%
! ATGAACAAAATGTGTGTATT+TGG + Chr1:70703651-70703670 None:intergenic 25.0%
! CTGTAAAGAATCAACTAATA+AGG - Chr1:70704984-70705003 MsG0180003943.01.T01:intron 25.0%
! GTAGAAATTGAAATTCAGTT+GGG - Chr1:70705534-70705553 MsG0180003943.01.T01:intron 25.0%
! TATATGTAGGAAAAGACTTA+AGG - Chr1:70702733-70702752 MsG0180003943.01.T01:intron 25.0%
! TTATAACAGTAACACTACTT+TGG - Chr1:70703459-70703478 MsG0180003943.01.T01:intron 25.0%
! TTATTTGTAGAAGACTTAGA+AGG + Chr1:70702537-70702556 None:intergenic 25.0%
! TTCCTACATATACTTCAAAA+GGG + Chr1:70702725-70702744 None:intergenic 25.0%
! TTTCCTACATATACTTCAAA+AGG + Chr1:70702726-70702745 None:intergenic 25.0%
!! ATTTTTACCAGATATTGTGT+TGG - Chr1:70705725-70705744 MsG0180003943.01.T01:CDS 25.0%
!! TGAACTTTGAACATAACTTT+TGG - Chr1:70703817-70703836 MsG0180003943.01.T01:CDS 25.0%
!! TTTGAACATAACTTTTGGAT+GGG - Chr1:70703822-70703841 MsG0180003943.01.T01:CDS 25.0%
!!! AGACATTGTTATTCTTTTCA+AGG - Chr1:70702814-70702833 MsG0180003943.01.T01:CDS 25.0%
!!! TGTTATTCTTTTCAAGGTTT+TGG - Chr1:70702820-70702839 MsG0180003943.01.T01:intron 25.0%
AAGTCATAAGCTATAACACT+AGG + Chr1:70703758-70703777 None:intergenic 30.0%
AATCAGAAGATAAGGTACAT+TGG + Chr1:70703953-70703972 None:intergenic 30.0%
AATGAACAAAATTCTACCTG+TGG + Chr1:70704564-70704583 None:intergenic 30.0%
ACCAAATAAGGATGAGAAAA+TGG - Chr1:70704373-70704392 MsG0180003943.01.T01:intron 30.0%
AGAGTAGTAATACTTTCTTC+AGG + Chr1:70702567-70702586 None:intergenic 30.0%
AGATAAAAAAATTACCTGGC+CGG + Chr1:70705503-70705522 None:intergenic 30.0%
AGTAAATTGTACACCACTAA+TGG - Chr1:70703685-70703704 MsG0180003943.01.T01:intron 30.0%
AGTCTAGTTATGAAATTGAG+TGG - Chr1:70704734-70704753 MsG0180003943.01.T01:intron 30.0%
CTCTTGTACCATTGAATAAA+GGG + Chr1:70704160-70704179 None:intergenic 30.0%
GAAAATATGCCAAAATGAGA+AGG + Chr1:70703987-70704006 None:intergenic 30.0%
GTTAAAGAACCACCATTTAA+TGG + Chr1:70702938-70702957 None:intergenic 30.0%
GTTCAAAAATGTCACAATGT+TGG - Chr1:70704608-70704627 MsG0180003943.01.T01:intron 30.0%
TACCTTCCAACAAATAACAA+TGG - Chr1:70702384-70702403 MsG0180003943.01.T01:CDS 30.0%
TCACAAAGGAAAAACAGAAA+TGG - Chr1:70705921-70705940 MsG0180003943.01.T01:CDS 30.0%
TCCTACATATACTTCAAAAG+GGG + Chr1:70702724-70702743 None:intergenic 30.0%
TCTGTTTATATACATCGAAC+CGG - Chr1:70705481-70705500 MsG0180003943.01.T01:intron 30.0%
TGACAATGGATAGTTAACTT+TGG + Chr1:70702354-70702373 None:intergenic 30.0%
TTAAATGGTGGTTCTTTAAC+AGG - Chr1:70702938-70702957 MsG0180003943.01.T01:CDS 30.0%
TTCTTTCCATTGTTTCACAA+AGG - Chr1:70705907-70705926 MsG0180003943.01.T01:CDS 30.0%
TTGAAGCTTCAACAAAATCA+AGG - Chr1:70703508-70703527 MsG0180003943.01.T01:intron 30.0%
TTTCCTAGTTAAATGCTGAA+GGG + Chr1:70704030-70704049 None:intergenic 30.0%
! AATGTGTGTATTTGGTTTCA+TGG + Chr1:70703643-70703662 None:intergenic 30.0%
! ATTTGGTGATTGATATCTGT+AGG - Chr1:70705436-70705455 MsG0180003943.01.T01:intron 30.0%
! CTTTGAACATAACTTTTGGA+TGG - Chr1:70703821-70703840 MsG0180003943.01.T01:CDS 30.0%
! GTTTTTCCTTTGTGAAACAA+TGG + Chr1:70705916-70705935 None:intergenic 30.0%
! TTTTCCTAGTTAAATGCTGA+AGG + Chr1:70704031-70704050 None:intergenic 30.0%
!! ACTGCAACAATTGTTTCTAA+GGG + Chr1:70703060-70703079 None:intergenic 30.0%
!! ATTTATTTAGGGTAGTGGAA+GGG - Chr1:70704789-70704808 MsG0180003943.01.T01:intron 30.0%
!! TATTTATTTAGGGTAGTGGA+AGG - Chr1:70704788-70704807 MsG0180003943.01.T01:intron 30.0%
!!! GGTGAAAAAAGAAGGTATTT+TGG - Chr1:70705798-70705817 MsG0180003943.01.T01:CDS 30.0%
!!! GTTAGCTCTTTTTTTTTGTC+AGG + Chr1:70703730-70703749 None:intergenic 30.0%
!!! TCTTTTTTTTTGTCAGGTAG+TGG + Chr1:70703724-70703743 None:intergenic 30.0%
AAACATGTGATCGAAAAGTG+AGG + Chr1:70703363-70703382 None:intergenic 35.0%
AACTCATCAGAAGGAGAAAT+TGG + Chr1:70702977-70702996 None:intergenic 35.0%
ACCACATTGGCAATATAACA+AGG + Chr1:70705081-70705100 None:intergenic 35.0%
AGAAACTCCATTGGTATTCT+AGG + Chr1:70702432-70702451 None:intergenic 35.0%
AGCATAGGAATTGGAATATG+TGG - Chr1:70705203-70705222 MsG0180003943.01.T01:intron 35.0%
AGCATCAACTACACCAAATA+AGG - Chr1:70704361-70704380 MsG0180003943.01.T01:intron 35.0%
AGGAATGTTCATGTTACACA+TGG - Chr1:70705004-70705023 MsG0180003943.01.T01:intron 35.0%
ATAGGAATTGGAATATGTGG+TGG - Chr1:70705206-70705225 MsG0180003943.01.T01:intron 35.0%
ATATGCCAAAATGAGAAGGT+TGG + Chr1:70703983-70704002 None:intergenic 35.0%
ATTGGAATATGTGGTGGTAA+AGG - Chr1:70705212-70705231 MsG0180003943.01.T01:intron 35.0%
ATTGGCAATATAACAAGGAC+AGG + Chr1:70705076-70705095 None:intergenic 35.0%
CAACCCAAAACAAAAGGTAA+GGG + Chr1:70703029-70703048 None:intergenic 35.0%
CAAGATTTCTCAAACATGTG+TGG - Chr1:70702591-70702610 MsG0180003943.01.T01:intron 35.0%
CATAGCAGTGAACCATTAAA+TGG - Chr1:70702923-70702942 MsG0180003943.01.T01:intron 35.0%
GAAAATGGCTAAGACTGATA+TGG - Chr1:70704388-70704407 MsG0180003943.01.T01:intron 35.0%
GAATATGAATTGTGGACACA+AGG - Chr1:70705873-70705892 MsG0180003943.01.T01:CDS 35.0%
GACAATCTACCTGATGTTAA+TGG + Chr1:70702902-70702921 None:intergenic 35.0%
GCTCTTGTACCATTGAATAA+AGG + Chr1:70704161-70704180 None:intergenic 35.0%
GGTACTCATTTCTATGACAA+TGG + Chr1:70702368-70702387 None:intergenic 35.0%
GGTGACTGCTTAACTTTATA+AGG + Chr1:70704854-70704873 None:intergenic 35.0%
GTAACACTACTTTGGTATAG+AGG - Chr1:70703467-70703486 MsG0180003943.01.T01:intron 35.0%
TACCAATGGAGTTTCTTTCA+AGG - Chr1:70702436-70702455 MsG0180003943.01.T01:CDS 35.0%
TAGAGGATGGTGAAAAAAGA+AGG - Chr1:70705790-70705809 MsG0180003943.01.T01:CDS 35.0%
TAGTTTAGTTACCTCTCTTG+CGG + Chr1:70702682-70702701 None:intergenic 35.0%
TCCATACACCCTTTATTCAA+TGG - Chr1:70704149-70704168 MsG0180003943.01.T01:intron 35.0%
TGAGTTTGACGATGTTGTTA+AGG - Chr1:70702991-70703010 MsG0180003943.01.T01:CDS 35.0%
TTAGAAGGTAAGCAAGAAGA+AGG + Chr1:70702522-70702541 None:intergenic 35.0%
TTCTAATCGAGATTCGAACT+CGG - Chr1:70704827-70704846 MsG0180003943.01.T01:intron 35.0%
! AAAGCATTAGAGACCATTAG+TGG + Chr1:70703701-70703720 None:intergenic 35.0%
! AACCATCTTCCTACTGTTTT+AGG + Chr1:70704224-70704243 None:intergenic 35.0%
! ACCATTGAATAAAGGGTGTA+TGG + Chr1:70704153-70704172 None:intergenic 35.0%
! ATGTTACACATGGTTTGTCA+GGG - Chr1:70705014-70705033 MsG0180003943.01.T01:intron 35.0%
! ATTCCTATGCTTTTCTCAAG+TGG + Chr1:70705194-70705213 None:intergenic 35.0%
! CTTGAGAAAAGCATAGGAAT+TGG - Chr1:70705194-70705213 MsG0180003943.01.T01:intron 35.0%
! CTTGATATATGCAGCTCTAA+GGG - Chr1:70705106-70705125 MsG0180003943.01.T01:intron 35.0%
! TCCTTGTTATATTGCCAATG+TGG - Chr1:70705077-70705096 MsG0180003943.01.T01:intron 35.0%
!! GACTGCAACAATTGTTTCTA+AGG + Chr1:70703061-70703080 None:intergenic 35.0%
!! GCCATTTTCTCATCCTTATT+TGG + Chr1:70704377-70704396 None:intergenic 35.0%
!! GGTGTACAATTTACTTTTGC+AGG + Chr1:70703680-70703699 None:intergenic 35.0%
!! GTGTTGCCATTGTTATTTGT+TGG + Chr1:70702393-70702412 None:intergenic 35.0%
!! TGCCATTGTTATTTGTTGGA+AGG + Chr1:70702389-70702408 None:intergenic 35.0%
!! TGTTCCCTTACCTTTTGTTT+TGG - Chr1:70703022-70703041 MsG0180003943.01.T01:CDS 35.0%
!! TTGATATATGCAGCTCTAAG+GGG - Chr1:70705107-70705126 MsG0180003943.01.T01:intron 35.0%
!!! ACCCCTTTTGAAGTATATGT+AGG - Chr1:70702720-70702739 MsG0180003943.01.T01:intron 35.0%
!!! GTTCCCTTACCTTTTGTTTT+GGG - Chr1:70703023-70703042 MsG0180003943.01.T01:CDS 35.0%
ACATCGTCAAACTCATCAGA+AGG + Chr1:70702986-70703005 None:intergenic 40.0%
AGAGAGTCCTAGAATACCAA+TGG - Chr1:70702422-70702441 MsG0180003943.01.T01:CDS 40.0%
AGAGCTGCATATATCAAGGA+AGG + Chr1:70705104-70705123 None:intergenic 40.0%
AGCAGTGAACCATTAAATGG+TGG - Chr1:70702926-70702945 MsG0180003943.01.T01:intron 40.0%
ATATCAAGGAAGGACCACAT+TGG + Chr1:70705094-70705113 None:intergenic 40.0%
ATGAAAAGCAGACATGTAGC+AGG - Chr1:70705603-70705622 MsG0180003943.01.T01:intron 40.0%
CAAGAGCAATGAAAGAGATG+TGG - Chr1:70705147-70705166 MsG0180003943.01.T01:intron 40.0%
CACACATCCAACACAATATC+TGG + Chr1:70705735-70705754 None:intergenic 40.0%
CAGAACTAACAACAGAAGCA+AGG + Chr1:70704490-70704509 None:intergenic 40.0%
CAGCATGAAGTTGAGCATTA+TGG + Chr1:70704286-70704305 None:intergenic 40.0%
CCAACCCAAAACAAAAGGTA+AGG + Chr1:70703030-70703049 None:intergenic 40.0%
CCTTAGAGCTGCATATATCA+AGG + Chr1:70705108-70705127 None:intergenic 40.0%
CCTTGATATATGCAGCTCTA+AGG - Chr1:70705105-70705124 MsG0180003943.01.T01:intron 40.0%
GACCTAAAACAGTAGGAAGA+TGG - Chr1:70704219-70704238 MsG0180003943.01.T01:intron 40.0%
GACCTTGAAAGAAACTCCAT+TGG + Chr1:70702441-70702460 None:intergenic 40.0%
GAGGAAGATACTAAACAGGT+CGG + Chr1:70703334-70703353 None:intergenic 40.0%
GCAAGAGGAAGATACTAAAC+AGG + Chr1:70703338-70703357 None:intergenic 40.0%
GGATTGAAGACAGAATCAAG+AGG - Chr1:70705819-70705838 MsG0180003943.01.T01:CDS 40.0%
GTAGGAAAAGACTTAAGGGA+GGG - Chr1:70702738-70702757 MsG0180003943.01.T01:intron 40.0%
GTTGCGTGAATCAGAAGATA+AGG + Chr1:70703961-70703980 None:intergenic 40.0%
TATCTGTAGGTGATCTTCAC+TGG - Chr1:70705449-70705468 MsG0180003943.01.T01:intron 40.0%
TCACACAAAACTCAATCCAC+CGG - Chr1:70703267-70703286 MsG0180003943.01.T01:intron 40.0%
TCATCAGAAGGAGAAATTGG+TGG + Chr1:70702974-70702993 None:intergenic 40.0%
TGGAGTTTCTTTCAAGGTCA+TGG - Chr1:70702442-70702461 MsG0180003943.01.T01:CDS 40.0%
TGTAGGAAAAGACTTAAGGG+AGG - Chr1:70702737-70702756 MsG0180003943.01.T01:intron 40.0%
TGTGCACAAATTTACCAGCT+TGG - Chr1:70705751-70705770 MsG0180003943.01.T01:CDS 40.0%
TGTTCAGGACCTAAAACAGT+AGG - Chr1:70704212-70704231 MsG0180003943.01.T01:intron 40.0%
TTCCTCTAGCAAGAAGTTCT+TGG + Chr1:70705316-70705335 None:intergenic 40.0%
! ACACCACTTGAGAAAAGCAT+AGG - Chr1:70705188-70705207 MsG0180003943.01.T01:intron 40.0%
! AGAGCTATGAGTAGTGGAAT+TGG - Chr1:70704176-70704195 MsG0180003943.01.T01:intron 40.0%
! AGTTCTAGCACTAGTGAAAG+TGG - Chr1:70705248-70705267 MsG0180003943.01.T01:intron 40.0%
! CATGTTACACATGGTTTGTC+AGG - Chr1:70705013-70705032 MsG0180003943.01.T01:intron 40.0%
! GAAGTGTCTCCATTAACATC+AGG - Chr1:70702890-70702909 MsG0180003943.01.T01:intron 40.0%
! TGTTACACATGGTTTGTCAG+GGG - Chr1:70705015-70705034 MsG0180003943.01.T01:intron 40.0%
!! ACTGTTTTAGGTCCTGAACA+AGG + Chr1:70704212-70704231 None:intergenic 40.0%
!! ATTGGTATTCTAGGACTCTC+TGG + Chr1:70702423-70702442 None:intergenic 40.0%
!! TGATATATGCAGCTCTAAGG+GGG - Chr1:70705108-70705127 MsG0180003943.01.T01:intron 40.0%
!!! CCTTACCTTTTGTTTTGGGT+TGG - Chr1:70703027-70703046 MsG0180003943.01.T01:CDS 40.0%
!!! CTTTTGTTTTGGGTTGGAGT+GGG - Chr1:70703033-70703052 MsG0180003943.01.T01:CDS 40.0%
AAAACTCAATCCACCGGCAA+GGG - Chr1:70703273-70703292 MsG0180003943.01.T01:intron 45.0%
ACAAATTTACCAGCTTGGCC+AGG - Chr1:70705756-70705775 MsG0180003943.01.T01:CDS 45.0%
AGCCAAGAACTTCTTGCTAG+AGG - Chr1:70705311-70705330 MsG0180003943.01.T01:CDS 45.0%
CCACTCCAACCCAAAACAAA+AGG + Chr1:70703035-70703054 None:intergenic 45.0%
CTGTCTAACAATCAGCAAGC+AGG + Chr1:70703909-70703928 None:intergenic 45.0%
GAAGGTAAGCAAGAAGAAGG+AGG + Chr1:70702519-70702538 None:intergenic 45.0%
GCTCCCTTCAGCATTTAACT+AGG - Chr1:70704024-70704043 MsG0180003943.01.T01:CDS 45.0%
GGTACAAGAGCTATGAGTAG+TGG - Chr1:70704170-70704189 MsG0180003943.01.T01:intron 45.0%
GTTGAAGCTGCTGAAGCAAT+GGG - Chr1:70704449-70704468 MsG0180003943.01.T01:intron 45.0%
TCGAAAAGTGAGGTTGCAAG+AGG + Chr1:70703353-70703372 None:intergenic 45.0%
TCTAGCACTAGTGAAAGTGG+AGG - Chr1:70705251-70705270 MsG0180003943.01.T01:intron 45.0%
TGTTGAAGCTGCTGAAGCAA+TGG - Chr1:70704448-70704467 MsG0180003943.01.T01:intron 45.0%
TTACTCAAACGCACTCGCAA+AGG - Chr1:70705341-70705360 MsG0180003943.01.T01:CDS 45.0%
TTATATACATCGAACCGGCC+AGG - Chr1:70705486-70705505 MsG0180003943.01.T01:intron 45.0%
! CGCAACCAACCTTCTCATTT+TGG - Chr1:70703975-70703994 MsG0180003943.01.T01:CDS 45.0%
! CTTGCTGATTGTTAGACAGC+AGG - Chr1:70703910-70703929 MsG0180003943.01.T01:CDS 45.0%
! TCCTCTAAAAGATGCCTTCC+TGG + Chr1:70705777-70705796 None:intergenic 45.0%
!! GATATATGCAGCTCTAAGGG+GGG - Chr1:70705109-70705128 MsG0180003943.01.T01:intron 45.0%
!!! CCTTTTGTTTTGGGTTGGAG+TGG - Chr1:70703032-70703051 MsG0180003943.01.T01:CDS 45.0%
!!! GGAAGGCATCTTTTAGAGGA+TGG - Chr1:70705777-70705796 MsG0180003943.01.T01:CDS 45.0%
!! TTCATATATAAAAAAAATAA+AGG + Chr1:70704639-70704658 None:intergenic 5.0%
AAGCAAGAAGAAGGAGGAGG+TGG + Chr1:70702513-70702532 None:intergenic 50.0%
AATCAGCAAGCAGGCAGGTT+TGG + Chr1:70703900-70703919 None:intergenic 50.0%
ATACTAAACAGGTCGGCCCT+AGG + Chr1:70703327-70703346 None:intergenic 50.0%
ATTTACCAGCTTGGCCAGGA+AGG - Chr1:70705760-70705779 MsG0180003943.01.T01:CDS 50.0%
CAAAACTCAATCCACCGGCA+AGG - Chr1:70703272-70703291 MsG0180003943.01.T01:intron 50.0%
CACTAGTGAAAGTGGAGGAG+AGG - Chr1:70705256-70705275 MsG0180003943.01.T01:intron 50.0%
CATGTCACAATCCGCAAGAG+AGG - Chr1:70702668-70702687 MsG0180003943.01.T01:CDS 50.0%
CTAACAATCAGCAAGCAGGC+AGG + Chr1:70703905-70703924 None:intergenic 50.0%
GGCAATGCAACTCCTTGTTC+AGG - Chr1:70704197-70704216 MsG0180003943.01.T01:intron 50.0%
GGCTAAGACTGATATGGCTG+TGG - Chr1:70704394-70704413 MsG0180003943.01.T01:intron 50.0%
GGTAAGCAAGAAGAAGGAGG+AGG + Chr1:70702516-70702535 None:intergenic 50.0%
! TTTCGTGTGTGATAGCGCAG+TGG + Chr1:70704875-70704894 None:intergenic 50.0%
!!! GCCAGGAAGGCATCTTTTAG+AGG - Chr1:70705773-70705792 MsG0180003943.01.T01:CDS 50.0%
CAAGAAGAAGGAGGAGGTGG+TGG + Chr1:70702510-70702529 None:intergenic 55.0%
! AGCAGGCAGGTTTGGTTGAC+AGG + Chr1:70703892-70703911 None:intergenic 55.0%
AACAGGTCGGCCCTAGGCAT+AGG + Chr1:70703321-70703340 None:intergenic 60.0%
AGATGCCTTCCTGGCCAAGC+TGG + Chr1:70705768-70705787 None:intergenic 60.0%
CTAACTGCTGCAGCTGCCAC+AGG - Chr1:70704545-70704564 MsG0180003943.01.T01:intron 60.0%
! GAAGGAGGAGGTGGTGGTTG+AGG + Chr1:70702504-70702523 None:intergenic 60.0%
AATCCACCGGCAAGGGCCCT+AGG - Chr1:70703280-70703299 MsG0180003943.01.T01:intron 65.0%
GCATCCCCGGCCTATGCCTA+GGG - Chr1:70703308-70703327 MsG0180003943.01.T01:intron 65.0%
CGCATCCCCGGCCTATGCCT+AGG - Chr1:70703307-70703326 MsG0180003943.01.T01:intron 70.0%
GGCATAGGCCGGGGATGCGA+CGG + Chr1:70703306-70703325 None:intergenic 70.0%
GGTCGGCCCTAGGCATAGGC+CGG + Chr1:70703317-70703336 None:intergenic 70.0%
GTCGGCCCTAGGCATAGGCC+GGG + Chr1:70703316-70703335 None:intergenic 70.0%
TCGGCCCTAGGCATAGGCCG+GGG + Chr1:70703315-70703334 None:intergenic 70.0%
CGACGGCCTAGGGCCCTTGC+CGG + Chr1:70703289-70703308 None:intergenic 75.0%
GCCCTAGGCCGTCGCATCCC+CGG - Chr1:70703295-70703314 MsG0180003943.01.T01:intron 75.0%
GCCGGGGATGCGACGGCCTA+GGG + Chr1:70703299-70703318 None:intergenic 75.0%
! CGGCCTAGGGCCCTTGCCGG+TGG + Chr1:70703286-70703305 None:intergenic 80.0%
! GGCCGGGGATGCGACGGCCT+AGG + Chr1:70703300-70703319 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 70702345 70705950 70702345 ID=MsG0180003943.01;Name=MsG0180003943.01
Chr1 mRNA 70702345 70705950 70702345 ID=MsG0180003943.01.T01;Parent=MsG0180003943.01;Name=MsG0180003943.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|7|0|489
Chr1 exon 70705606 70705950 70705606 ID=MsG0180003943.01.T01:exon:4645;Parent=MsG0180003943.01.T01
Chr1 exon 70705283 70705405 70705283 ID=MsG0180003943.01.T01:exon:4644;Parent=MsG0180003943.01.T01
Chr1 exon 70703729 70704164 70703729 ID=MsG0180003943.01.T01:exon:4643;Parent=MsG0180003943.01.T01
Chr1 exon 70702933 70703175 70702933 ID=MsG0180003943.01.T01:exon:4642;Parent=MsG0180003943.01.T01
Chr1 exon 70702788 70702837 70702788 ID=MsG0180003943.01.T01:exon:4641;Parent=MsG0180003943.01.T01
Chr1 exon 70702647 70702704 70702647 ID=MsG0180003943.01.T01:exon:4640;Parent=MsG0180003943.01.T01
Chr1 exon 70702345 70702559 70702345 ID=MsG0180003943.01.T01:exon:4639;Parent=MsG0180003943.01.T01
Chr1 CDS 70705606 70705950 70705606 ID=MsG0180003943.01.T01:cds;Parent=MsG0180003943.01.T01
Chr1 CDS 70705283 70705405 70705283 ID=MsG0180003943.01.T01:cds;Parent=MsG0180003943.01.T01
Chr1 CDS 70703729 70704164 70703729 ID=MsG0180003943.01.T01:cds;Parent=MsG0180003943.01.T01
Chr1 CDS 70702933 70703175 70702933 ID=MsG0180003943.01.T01:cds;Parent=MsG0180003943.01.T01
Chr1 CDS 70702788 70702837 70702788 ID=MsG0180003943.01.T01:cds;Parent=MsG0180003943.01.T01
Chr1 CDS 70702647 70702704 70702647 ID=MsG0180003943.01.T01:cds;Parent=MsG0180003943.01.T01
Chr1 CDS 70702345 70702559 70702345 ID=MsG0180003943.01.T01:cds;Parent=MsG0180003943.01.T01
Gene Sequence

>MsG0180003943.01.T01

ATGGAACCAAAGTTAACTATCCATTGTCATAGAAATGAGTACCTTCCAACAAATAACAATGGCAACACACGTTTGCCAGAGAGTCCTAGAATACCAATGGAGTTTCTTTCAAGGTCATGGAGTGCTTCTGCATTTGAAGTCTCTAAAGCATTGTCACCTCAACCACCACCTCCTCCTTCTTCTTGCTTACCTTCTAAGTCTTCTACAAATAACTCTATTCCTGAAGAAAGTATTACTACTCTTTCTCAAGATTTCTCAAACATGTGTGGAAATCAATTCTCTTTTGCTTCTTCTACTACTTCACAGCTTGTTCTTGAACGTATCATGTCACAATCCGCAAGAGAGGAAGTGTCTCCATTAACATCAGGTAGATTGTCTCATAGCAGTGAACCATTAAATGGTGGTTCTTTAACAGGAACAGATAGTCCACCAATTTCTCCTTCTGATGAGTTTGACGATGTTGTTAAGTTTTTTCGTGCAAACAATTCCATACACCCTTTATTCAATGGTACAAGAGCTATGAGTAGTGGAATTGGCAATGCAACTCCTTGTTCAGGACCTAAAACAGTAGGAAGATGGTTGAAAGAAAGAAGAGAAAAAAAGAAAGAAGAAAACAGAAGCCATAATGCTCAACTTCATGCTGCTATTTCTGTAGCTGCTGTAGCTTCTGCAGTTGCAGCTATCACTGCAGCAACAGCAGCATCAACTACACCAAATAAGGATGAGAAAATGGCTAAGACTGATATGGCTGTGGCTTCTGCAGCAACACTAATTGCTGCTCAGTGTGTTGAAGCTGCTGAAGCAATGGGAGCTGAGAGAGAACACCTTGCTTCTGTTGTTAGTTCTGCTGTTAATGTGAAATCTCATGATGATATCACTACTCTAACTGCTGCAGCTGCCACAGCTCTAAGGGGGGCAGCAACATTGAAAGCAAGAGCAATGAAAGAGATGTGGAATATTAGTACTGCAGTGACACCACTTGAGAAAAGCATAGGAATTGGAATATGTGGTGGTAAAGGCAATAACAACAGTAGTTCTAGCACTAGTGAAAGTGGAGGAGAGGTTATCAATGCAGATAATTTTCTAAGTACTTGCAGCCAAGAACTTCTTGCTAGAGGAACTGAATTACTCAAACGCACTCGCAAAGGTGATCTTCACTGGAAAATAGTTTCTGTTTATATACATCGAACCGGCCAGGTGATGCTGAAAATGAAAAGCAGACATGTAGCAGGAACCATTACAAAAAAGAAAAAGAATATTGTGTTGGATGTGTGCACAAATTTACCAGCTTGGCCAGGAAGGCATCTTTTAGAGGATGGTGAAAAAAGAAGGTATTTTGGATTGAAGACAGAATCAAGAGGTTTAGTTGAGTTTGAATGTAGAAATCAAAGAGAATATGAATTGTGGACACAAGGTGTTTCAAGACTTCTTTCCATTGTTTCACAAAGGAAAAACAGAAATGGAATGTAA

Protein sequence

>MsG0180003943.01.T01

MEPKLTIHCHRNEYLPTNNNGNTRLPESPRIPMEFLSRSWSASAFEVSKALSPQPPPPPSSCLPSKSSTNNSIPEESITTLSQDFSNMCGNQFSFASSTTSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGTRAMSSGIGNATPCSGPKTVGRWLKERREKKKEENRSHNAQLHAAISVAAVASAVAAITAATAASTTPNKDEKMAKTDMAVASAATLIAAQCVEAAEAMGAEREHLASVVSSAVNVKSHDDITTLTAAAATALRGAATLKARAMKEMWNISTAVTPLEKSIGIGICGGKGNNNSSSSTSESGGEVINADNFLSTCSQELLARGTELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNIVLDVCTNLPAWPGRHLLEDGEKRRYFGLKTESRGLVEFECRNQREYELWTQGVSRLLSIVSQRKNRNGM*